Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694720 | XP_024637097.1 | 85.047 | 214 | 9 | 2 | 1 | 191 | 1 | 214 | 1.04e-122 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694720 | G7JNM4 | 84.259 | 216 | 9 | 3 | 1 | 191 | 25 | 240 | 1.77e-121 | 352 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077340 | Msa0694720 | 0.807300 | 5.407541e-50 | -8.615850e-47 |
| Msa0611210 | Msa0694720 | 0.800132 | 1.663108e-48 | -8.615850e-47 |
| Msa0651550 | Msa0694720 | 0.816845 | 4.481917e-52 | -8.615850e-47 |
| Msa0652170 | Msa0694720 | 0.888412 | 6.042952e-73 | -8.615850e-47 |
| Msa0694720 | Msa0735780 | 0.824873 | 6.374113e-54 | -8.615850e-47 |
| Msa0694720 | Msa0819170 | 0.831136 | 1.980958e-55 | -8.615850e-47 |
| Msa0694720 | Msa0833650 | 0.808134 | 3.595329e-50 | -8.615850e-47 |
| Msa0694720 | Msa1132840 | 0.804574 | 2.023464e-49 | -8.615850e-47 |
| Msa0694720 | Msa1405460 | 0.811257 | 7.665316e-51 | -8.615850e-47 |
| Msa0123070 | Msa0694720 | 0.800899 | 1.160390e-48 | -8.615850e-47 |
| Msa0205110 | Msa0694720 | 0.801494 | 8.769421e-49 | -8.615850e-47 |
| Msa0529030 | Msa0694720 | 0.810944 | 8.958968e-51 | -8.615850e-47 |
| Msa0530780 | Msa0694720 | 0.813726 | 2.211862e-51 | -8.615850e-47 |
| Msa0580370 | Msa0694720 | 0.806376 | 8.476830e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694720 | MtrunA17_Chr4g0045611 | 84.259 | 216 | 9 | 3 | 1 | 191 | 1 | 216 | 1.07e-124 | 350 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694720 | AT3G59680.2 | 48.990 | 198 | 71 | 8 | 12 | 182 | 24 | 218 | 4.90e-49 | 159 |
| Msa0694720 | AT3G59680.1 | 47.619 | 189 | 70 | 7 | 22 | 183 | 5 | 191 | 3.86e-45 | 148 |
Find 35 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTAATAATTCAACTTTA+TGG | 0.128033 | 4_4:+64065678 | Msa0694720:CDS |
| GTGGAAATATTTGTTGATTT+TGG | 0.165410 | 4_4:-64065656 | None:intergenic |
| ATTTCTCAAAATCTCATTAT+AGG | 0.182353 | 4_4:-64065831 | None:intergenic |
| GTAGGAACTTGAGGGGATTT+TGG | 0.233877 | 4_4:-64065710 | None:intergenic |
| CTTGTATTTGAATCATTCTT+TGG | 0.242496 | 4_4:-64065008 | None:intergenic |
| GAAATCAAATGGAAGTTATT+AGG | 0.286022 | 4_4:+64066053 | Msa0694720:CDS |
| GGATAACTATTACTTCTTCT+AGG | 0.341829 | 4_4:-64065863 | None:intergenic |
| CAATGGATGTAACTAGCTTA+TGG | 0.393769 | 4_4:+64065624 | Msa0694720:CDS |
| ATCTCATTATAGGAATAAAT+AGG | 0.401100 | 4_4:-64065821 | None:intergenic |
| GCCTAGTCCTCTTAGTAGAA+TGG | 0.460019 | 4_4:+64066108 | Msa0694720:CDS |
| AAATGGAAGTTATTAGGAAA+AGG | 0.469401 | 4_4:+64066059 | Msa0694720:CDS |
| CCAAAGCAAAAGATAGATGT+TGG | 0.494796 | 4_4:+64064829 | Msa0694720:five_prime_UTR |
| TCCATTGCTCTTTGATACCA+TGG | 0.496795 | 4_4:-64065608 | None:intergenic |
| AAATAATTCAAAAGGAATCA+TGG | 0.496831 | 4_4:+64064803 | Msa0694720:five_prime_UTR |
| AATTAGAAGAAGAAATCAAA+TGG | 0.496957 | 4_4:+64066042 | Msa0694720:CDS |
| GCAAGAACCATTCTACTAAG+AGG | 0.510476 | 4_4:-64066115 | None:intergenic |
| CAAAGCAAAAGATAGATGTT+GGG | 0.516457 | 4_4:+64064830 | Msa0694720:five_prime_UTR |
| TAAAGTTGAATTATTAGATG+TGG | 0.519784 | 4_4:-64065675 | None:intergenic |
| TGAAAATATGAAAGAGGTGG+AGG | 0.520559 | 4_4:-64064963 | None:intergenic |
| ACAATAAAGAATGACAGAAA+AGG | 0.525503 | 4_4:+64064855 | Msa0694720:five_prime_UTR |
| TCATGTGATGTTGTTTGCAA+TGG | 0.526646 | 4_4:-64065899 | None:intergenic |
| TAATAATTCAACTTTATGGA+AGG | 0.536189 | 4_4:+64065682 | Msa0694720:CDS |
| CAAAGAATGATTCAAATACA+AGG | 0.543307 | 4_4:+64065009 | Msa0694720:CDS |
| GAAAACTGAAAATATGAAAG+AGG | 0.553021 | 4_4:-64064969 | None:intergenic |
| TTTCAAGATGCAGGAAGCCA+TGG | 0.559134 | 4_4:+64065591 | Msa0694720:intron |
| GCCATGGTATCAAAGAGCAA+TGG | 0.567750 | 4_4:+64065607 | Msa0694720:CDS |
| AAATTAGAACTCATAGTGCT+AGG | 0.568662 | 4_4:+64065921 | Msa0694720:CDS |
| AGTGCTAGGCTTAGCACAGA+GGG | 0.581749 | 4_4:+64065935 | Msa0694720:CDS |
| AACTGAAAATATGAAAGAGG+TGG | 0.590887 | 4_4:-64064966 | None:intergenic |
| ACTTTGTGTAGGAACTTGAG+GGG | 0.629081 | 4_4:-64065717 | None:intergenic |
| TAACTATTACTTCTTCTAGG+TGG | 0.635383 | 4_4:-64065860 | None:intergenic |
| ACCATTCTACTAAGAGGACT+AGG | 0.640553 | 4_4:-64066109 | None:intergenic |
| TTAGGAAAAGGAGTGTGATG+AGG | 0.650109 | 4_4:+64066071 | Msa0694720:CDS |
| TTAGCACAGAGGGATCAAGA+AGG | 0.686930 | 4_4:+64065945 | Msa0694720:CDS |
| TAGTGCTAGGCTTAGCACAG+AGG | 0.719730 | 4_4:+64065934 | Msa0694720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAAAAATAATTCAAA+AGG | + | chr4_4:64064795-64064814 | Msa0694720:five_prime_UTR | 10.0% |
| !! | ACAAAAAAAAATAATTCAAA+AGG | + | chr4_4:64064795-64064814 | Msa0694720:five_prime_UTR | 10.0% |
| !! | GATTATAAAATCTGAAAAAA+TGG | + | chr4_4:64066231-64066250 | Msa0694720:intron | 15.0% |
| !!! | TTATATAATCTGAAATTCAT+AGG | + | chr4_4:64066294-64066313 | Msa0694720:intron | 15.0% |
| !!! | TATATAATCTGAAATTCATA+GGG | + | chr4_4:64066295-64066314 | Msa0694720:intron | 15.0% |
| !!! | TTTTTTTTTTTTACAATCTG+TGG | + | chr4_4:64066423-64066442 | Msa0694720:intron | 15.0% |
| !!! | TTTTTTTTTTTACAATCTGT+GGG | + | chr4_4:64066424-64066443 | Msa0694720:intron | 15.0% |
| !! | GATTATAAAATCTGAAAAAA+TGG | + | chr4_4:64066231-64066250 | Msa0694720:intron | 15.0% |
| !!! | TTATATAATCTGAAATTCAT+AGG | + | chr4_4:64066294-64066313 | Msa0694720:intron | 15.0% |
| !!! | TATATAATCTGAAATTCATA+GGG | + | chr4_4:64066295-64066314 | Msa0694720:intron | 15.0% |
| !!! | TTTTTTTTTTTTACAATCTG+TGG | + | chr4_4:64066423-64066442 | Msa0694720:intron | 15.0% |
| !!! | TTTTTTTTTTTACAATCTGT+GGG | + | chr4_4:64066424-64066443 | Msa0694720:intron | 15.0% |
| !! | AAATAATTCAAAAGGAATCA+TGG | + | chr4_4:64064803-64064822 | Msa0694720:five_prime_UTR | 20.0% |
| !!! | GAAAGTGTTAAATTTAGTTT+AGG | - | chr4_4:64065214-64065233 | None:intergenic | 20.0% |
| !!! | TTTATAGGTTTTTTCAACAT+TGG | + | chr4_4:64065387-64065406 | Msa0694720:intron | 20.0% |
| !! | TAAAGTTGAATTATTAGATG+TGG | - | chr4_4:64065678-64065697 | None:intergenic | 20.0% |
| !! | CATCTAATAATTCAACTTTA+TGG | + | chr4_4:64065678-64065697 | Msa0694720:CDS | 20.0% |
| !! | TAATAATTCAACTTTATGGA+AGG | + | chr4_4:64065682-64065701 | Msa0694720:CDS | 20.0% |
| !! | ATCTCATTATAGGAATAAAT+AGG | - | chr4_4:64065824-64065843 | None:intergenic | 20.0% |
| !! | ATTTCTCAAAATCTCATTAT+AGG | - | chr4_4:64065834-64065853 | None:intergenic | 20.0% |
| !!! | AATGAAAAGATTTGTTATTG+AGG | + | chr4_4:64066003-64066022 | Msa0694720:intron | 20.0% |
| !! | AATTAGAAGAAGAAATCAAA+TGG | + | chr4_4:64066042-64066061 | Msa0694720:CDS | 20.0% |
| !!! | TCAGATTTTATAATCTGAAT+AGG | - | chr4_4:64066226-64066245 | None:intergenic | 20.0% |
| !! | TGTAATGTCTAAATCTAAAT+TGG | + | chr4_4:64066353-64066372 | Msa0694720:intron | 20.0% |
| !!! | TTCGAACAATTTATGTTTTA+TGG | + | chr4_4:64066476-64066495 | Msa0694720:intron | 20.0% |
| !! | GTTTCTATAAAAACAAAAGA+AGG | - | chr4_4:64066570-64066589 | None:intergenic | 20.0% |
| !! | AAATAATTCAAAAGGAATCA+TGG | + | chr4_4:64064803-64064822 | Msa0694720:five_prime_UTR | 20.0% |
| !!! | GAAAGTGTTAAATTTAGTTT+AGG | - | chr4_4:64065214-64065233 | None:intergenic | 20.0% |
| !!! | TTTATAGGTTTTTTCAACAT+TGG | + | chr4_4:64065387-64065406 | Msa0694720:intron | 20.0% |
| !! | TAAAGTTGAATTATTAGATG+TGG | - | chr4_4:64065678-64065697 | None:intergenic | 20.0% |
| !! | CATCTAATAATTCAACTTTA+TGG | + | chr4_4:64065678-64065697 | Msa0694720:CDS | 20.0% |
| !! | TAATAATTCAACTTTATGGA+AGG | + | chr4_4:64065682-64065701 | Msa0694720:CDS | 20.0% |
| !! | ATCTCATTATAGGAATAAAT+AGG | - | chr4_4:64065824-64065843 | None:intergenic | 20.0% |
| !! | ATTTCTCAAAATCTCATTAT+AGG | - | chr4_4:64065834-64065853 | None:intergenic | 20.0% |
| !!! | AATGAAAAGATTTGTTATTG+AGG | + | chr4_4:64066003-64066022 | Msa0694720:intron | 20.0% |
| !! | AATTAGAAGAAGAAATCAAA+TGG | + | chr4_4:64066042-64066061 | Msa0694720:CDS | 20.0% |
| !!! | TCAGATTTTATAATCTGAAT+AGG | - | chr4_4:64066226-64066245 | None:intergenic | 20.0% |
| !! | TGTAATGTCTAAATCTAAAT+TGG | + | chr4_4:64066353-64066372 | Msa0694720:intron | 20.0% |
| !!! | TTCGAACAATTTATGTTTTA+TGG | + | chr4_4:64066476-64066495 | Msa0694720:intron | 20.0% |
| !! | GTTTCTATAAAAACAAAAGA+AGG | - | chr4_4:64066570-64066589 | None:intergenic | 20.0% |
| ! | ACAATAAAGAATGACAGAAA+AGG | + | chr4_4:64064855-64064874 | Msa0694720:five_prime_UTR | 25.0% |
| ! | GAAAACTGAAAATATGAAAG+AGG | - | chr4_4:64064972-64064991 | None:intergenic | 25.0% |
| ! | CTTGTATTTGAATCATTCTT+TGG | - | chr4_4:64065011-64065030 | None:intergenic | 25.0% |
| ! | CAAAGAATGATTCAAATACA+AGG | + | chr4_4:64065009-64065028 | Msa0694720:CDS | 25.0% |
| ! | TAAGCTAAAATTCTCAAGAA+GGG | - | chr4_4:64065062-64065081 | None:intergenic | 25.0% |
| ! | TTAAGCTAAAATTCTCAAGA+AGG | - | chr4_4:64065063-64065082 | None:intergenic | 25.0% |
| !!! | AGAATTTTAGCTTAATGCAT+TGG | + | chr4_4:64065068-64065087 | Msa0694720:intron | 25.0% |
| ! | TAGTGTGATCATCTATAATA+AGG | + | chr4_4:64065129-64065148 | Msa0694720:intron | 25.0% |
| ! | AGTGTGATCATCTATAATAA+GGG | + | chr4_4:64065130-64065149 | Msa0694720:intron | 25.0% |
| ! | TATGAAGAAGTTAATGCTAT+TGG | - | chr4_4:64065268-64065287 | None:intergenic | 25.0% |
| !!! | TTCAACATTGGTTCTAAATT+TGG | + | chr4_4:64065399-64065418 | Msa0694720:intron | 25.0% |
| !! | TAAATTTGGAATTTCCATTC+TGG | + | chr4_4:64065413-64065432 | Msa0694720:intron | 25.0% |
| ! | AATTTATAACTATGCCAGAA+TGG | - | chr4_4:64065430-64065449 | None:intergenic | 25.0% |
| !!! | TTTTAGAACCAATTATGCAA+GGG | - | chr4_4:64065517-64065536 | None:intergenic | 25.0% |
| !!! | ATTTTAGAACCAATTATGCA+AGG | - | chr4_4:64065518-64065537 | None:intergenic | 25.0% |
| !!! | AATTGGTTCTAAAATGAATG+TGG | + | chr4_4:64065523-64065542 | Msa0694720:intron | 25.0% |
| ! | TTCAATTTATTTCAAGATGC+AGG | + | chr4_4:64065582-64065601 | Msa0694720:intron | 25.0% |
| !!! | GTGGAAATATTTGTTGATTT+TGG | - | chr4_4:64065659-64065678 | None:intergenic | 25.0% |
| !! | TTGTTATTAGAACTTTGTGT+AGG | - | chr4_4:64065731-64065750 | None:intergenic | 25.0% |
| ! | AAGAAAATGTACATCTCTAA+AGG | + | chr4_4:64065763-64065782 | Msa0694720:intron | 25.0% |
| !!! | TAATGAGATTTTGAGAAATG+AGG | + | chr4_4:64065835-64065854 | Msa0694720:CDS | 25.0% |
| ! | GAAATCAAATGGAAGTTATT+AGG | + | chr4_4:64066053-64066072 | Msa0694720:CDS | 25.0% |
| ! | AAATGGAAGTTATTAGGAAA+AGG | + | chr4_4:64066059-64066078 | Msa0694720:CDS | 25.0% |
| ! | AGAAATTCTCTTACAAGAAT+GGG | - | chr4_4:64066176-64066195 | None:intergenic | 25.0% |
| ! | AAGAAATTCTCTTACAAGAA+TGG | - | chr4_4:64066177-64066196 | None:intergenic | 25.0% |
| ! | AATCTGAAAAAATGGTACTT+TGG | + | chr4_4:64066239-64066258 | Msa0694720:intron | 25.0% |
| ! | AAACTTAGCAAACAAGATTA+TGG | - | chr4_4:64066403-64066422 | None:intergenic | 25.0% |
| ! | ACAATAAAGAATGACAGAAA+AGG | + | chr4_4:64064855-64064874 | Msa0694720:five_prime_UTR | 25.0% |
| ! | GAAAACTGAAAATATGAAAG+AGG | - | chr4_4:64064972-64064991 | None:intergenic | 25.0% |
| ! | CTTGTATTTGAATCATTCTT+TGG | - | chr4_4:64065011-64065030 | None:intergenic | 25.0% |
| ! | CAAAGAATGATTCAAATACA+AGG | + | chr4_4:64065009-64065028 | Msa0694720:CDS | 25.0% |
| ! | TAAGCTAAAATTCTCAAGAA+GGG | - | chr4_4:64065062-64065081 | None:intergenic | 25.0% |
| ! | TTAAGCTAAAATTCTCAAGA+AGG | - | chr4_4:64065063-64065082 | None:intergenic | 25.0% |
| !!! | AGAATTTTAGCTTAATGCAT+TGG | + | chr4_4:64065068-64065087 | Msa0694720:intron | 25.0% |
| ! | TAGTGTGATCATCTATAATA+AGG | + | chr4_4:64065129-64065148 | Msa0694720:intron | 25.0% |
| ! | AGTGTGATCATCTATAATAA+GGG | + | chr4_4:64065130-64065149 | Msa0694720:intron | 25.0% |
| ! | TATGAAGAAGTTAATGCTAT+TGG | - | chr4_4:64065268-64065287 | None:intergenic | 25.0% |
| !!! | TTCAACATTGGTTCTAAATT+TGG | + | chr4_4:64065399-64065418 | Msa0694720:intron | 25.0% |
| !! | TAAATTTGGAATTTCCATTC+TGG | + | chr4_4:64065413-64065432 | Msa0694720:intron | 25.0% |
| ! | AATTTATAACTATGCCAGAA+TGG | - | chr4_4:64065430-64065449 | None:intergenic | 25.0% |
| !!! | TTTTAGAACCAATTATGCAA+GGG | - | chr4_4:64065517-64065536 | None:intergenic | 25.0% |
| !!! | ATTTTAGAACCAATTATGCA+AGG | - | chr4_4:64065518-64065537 | None:intergenic | 25.0% |
| !!! | AATTGGTTCTAAAATGAATG+TGG | + | chr4_4:64065523-64065542 | Msa0694720:intron | 25.0% |
| ! | TTCAATTTATTTCAAGATGC+AGG | + | chr4_4:64065582-64065601 | Msa0694720:intron | 25.0% |
| !!! | GTGGAAATATTTGTTGATTT+TGG | - | chr4_4:64065659-64065678 | None:intergenic | 25.0% |
| !! | TTGTTATTAGAACTTTGTGT+AGG | - | chr4_4:64065731-64065750 | None:intergenic | 25.0% |
| ! | AAGAAAATGTACATCTCTAA+AGG | + | chr4_4:64065763-64065782 | Msa0694720:intron | 25.0% |
| !!! | TAATGAGATTTTGAGAAATG+AGG | + | chr4_4:64065835-64065854 | Msa0694720:CDS | 25.0% |
| ! | GAAATCAAATGGAAGTTATT+AGG | + | chr4_4:64066053-64066072 | Msa0694720:CDS | 25.0% |
| ! | AAATGGAAGTTATTAGGAAA+AGG | + | chr4_4:64066059-64066078 | Msa0694720:CDS | 25.0% |
| ! | AGAAATTCTCTTACAAGAAT+GGG | - | chr4_4:64066176-64066195 | None:intergenic | 25.0% |
| ! | AAGAAATTCTCTTACAAGAA+TGG | - | chr4_4:64066177-64066196 | None:intergenic | 25.0% |
| ! | AATCTGAAAAAATGGTACTT+TGG | + | chr4_4:64066239-64066258 | Msa0694720:intron | 25.0% |
| ! | AAACTTAGCAAACAAGATTA+TGG | - | chr4_4:64066403-64066422 | None:intergenic | 25.0% |
| CAAAGCAAAAGATAGATGTT+GGG | + | chr4_4:64064830-64064849 | Msa0694720:five_prime_UTR | 30.0% | |
| AACTGAAAATATGAAAGAGG+TGG | - | chr4_4:64064969-64064988 | None:intergenic | 30.0% | |
| ! | AAATTTAGTTTAGGCCTTAG+AGG | - | chr4_4:64065205-64065224 | None:intergenic | 30.0% |
| TTCCCATGTTAGTAAAGAAT+TGG | + | chr4_4:64065231-64065250 | Msa0694720:intron | 30.0% | |
| TCCCATGTTAGTAAAGAATT+GGG | + | chr4_4:64065232-64065251 | Msa0694720:intron | 30.0% | |
| ACCCAATTCTTTACTAACAT+GGG | - | chr4_4:64065236-64065255 | None:intergenic | 30.0% | |
| AACCCAATTCTTTACTAACA+TGG | - | chr4_4:64065237-64065256 | None:intergenic | 30.0% | |
| ! | TTTTGACCAAATCAATTCTC+TGG | + | chr4_4:64065355-64065374 | Msa0694720:intron | 30.0% |
| GTTGAAAAAACCTATAAAGC+AGG | - | chr4_4:64065385-64065404 | None:intergenic | 30.0% | |
| ! | ATGATTTGTGTCTTGTAACA+AGG | - | chr4_4:64065461-64065480 | None:intergenic | 30.0% |
| TTACAAGACACAAATCATAG+AGG | + | chr4_4:64065463-64065482 | Msa0694720:intron | 30.0% | |
| ! | TTATTTTCCCCTTGCATAAT+TGG | + | chr4_4:64065506-64065525 | Msa0694720:intron | 30.0% |
| ! | TTTAGAACCAATTATGCAAG+GGG | - | chr4_4:64065516-64065535 | None:intergenic | 30.0% |
| ! | AGATGTACATTTTCTTAGCT+TGG | - | chr4_4:64065759-64065778 | None:intergenic | 30.0% |
| TAACTATTACTTCTTCTAGG+TGG | - | chr4_4:64065863-64065882 | None:intergenic | 30.0% | |
| GGATAACTATTACTTCTTCT+AGG | - | chr4_4:64065866-64065885 | None:intergenic | 30.0% | |
| AAATTAGAACTCATAGTGCT+AGG | + | chr4_4:64065921-64065940 | Msa0694720:CDS | 30.0% | |
| !! | AAGATTTGTTATTGAGGAAG+AGG | + | chr4_4:64066009-64066028 | Msa0694720:intron | 30.0% |
| ATAAATTGTGGGAAGAGAAA+TGG | + | chr4_4:64066324-64066343 | Msa0694720:intron | 30.0% | |
| CATAACAATACCATAAAGCT+GGG | - | chr4_4:64066502-64066521 | None:intergenic | 30.0% | |
| ACATAACAATACCATAAAGC+TGG | - | chr4_4:64066503-64066522 | None:intergenic | 30.0% | |
| AAACTAACATTGTGAAACTG+AGG | - | chr4_4:64066529-64066548 | None:intergenic | 30.0% | |
| CAAAGCAAAAGATAGATGTT+GGG | + | chr4_4:64064830-64064849 | Msa0694720:five_prime_UTR | 30.0% | |
| AACTGAAAATATGAAAGAGG+TGG | - | chr4_4:64064969-64064988 | None:intergenic | 30.0% | |
| ! | AAATTTAGTTTAGGCCTTAG+AGG | - | chr4_4:64065205-64065224 | None:intergenic | 30.0% |
| TTCCCATGTTAGTAAAGAAT+TGG | + | chr4_4:64065231-64065250 | Msa0694720:intron | 30.0% | |
| TCCCATGTTAGTAAAGAATT+GGG | + | chr4_4:64065232-64065251 | Msa0694720:intron | 30.0% | |
| ACCCAATTCTTTACTAACAT+GGG | - | chr4_4:64065236-64065255 | None:intergenic | 30.0% | |
| AACCCAATTCTTTACTAACA+TGG | - | chr4_4:64065237-64065256 | None:intergenic | 30.0% | |
| ! | TTTTGACCAAATCAATTCTC+TGG | + | chr4_4:64065355-64065374 | Msa0694720:intron | 30.0% |
| GTTGAAAAAACCTATAAAGC+AGG | - | chr4_4:64065385-64065404 | None:intergenic | 30.0% | |
| ! | ATGATTTGTGTCTTGTAACA+AGG | - | chr4_4:64065461-64065480 | None:intergenic | 30.0% |
| TTACAAGACACAAATCATAG+AGG | + | chr4_4:64065463-64065482 | Msa0694720:intron | 30.0% | |
| ! | TTATTTTCCCCTTGCATAAT+TGG | + | chr4_4:64065506-64065525 | Msa0694720:intron | 30.0% |
| ! | TTTAGAACCAATTATGCAAG+GGG | - | chr4_4:64065516-64065535 | None:intergenic | 30.0% |
| ! | AGATGTACATTTTCTTAGCT+TGG | - | chr4_4:64065759-64065778 | None:intergenic | 30.0% |
| TAACTATTACTTCTTCTAGG+TGG | - | chr4_4:64065863-64065882 | None:intergenic | 30.0% | |
| GGATAACTATTACTTCTTCT+AGG | - | chr4_4:64065866-64065885 | None:intergenic | 30.0% | |
| AAATTAGAACTCATAGTGCT+AGG | + | chr4_4:64065921-64065940 | Msa0694720:CDS | 30.0% | |
| !! | AAGATTTGTTATTGAGGAAG+AGG | + | chr4_4:64066009-64066028 | Msa0694720:intron | 30.0% |
| ATAAATTGTGGGAAGAGAAA+TGG | + | chr4_4:64066324-64066343 | Msa0694720:intron | 30.0% | |
| CATAACAATACCATAAAGCT+GGG | - | chr4_4:64066502-64066521 | None:intergenic | 30.0% | |
| ACATAACAATACCATAAAGC+TGG | - | chr4_4:64066503-64066522 | None:intergenic | 30.0% | |
| AAACTAACATTGTGAAACTG+AGG | - | chr4_4:64066529-64066548 | None:intergenic | 30.0% | |
| ! | CCAACATCTATCTTTTGCTT+TGG | - | chr4_4:64064832-64064851 | None:intergenic | 35.0% |
| CCAAAGCAAAAGATAGATGT+TGG | + | chr4_4:64064829-64064848 | Msa0694720:five_prime_UTR | 35.0% | |
| ! | TTTTGCTTCAGTTTGTGACT+TGG | - | chr4_4:64064895-64064914 | None:intergenic | 35.0% |
| TGAAAATATGAAAGAGGTGG+AGG | - | chr4_4:64064966-64064985 | None:intergenic | 35.0% | |
| ATGCTCACATTATTCCTCTA+AGG | + | chr4_4:64065188-64065207 | Msa0694720:intron | 35.0% | |
| TGCATTAGTACTTCTTGAGA+TGG | - | chr4_4:64065554-64065573 | None:intergenic | 35.0% | |
| ! | CAATGGATGTAACTAGCTTA+TGG | + | chr4_4:64065624-64065643 | Msa0694720:CDS | 35.0% |
| AACTTTGTGTAGGAACTTGA+GGG | - | chr4_4:64065721-64065740 | None:intergenic | 35.0% | |
| ! | AGGTAGCAACATCTTTTACA+AGG | + | chr4_4:64065783-64065802 | Msa0694720:intron | 35.0% |
| ! | GGTAGCAACATCTTTTACAA+GGG | + | chr4_4:64065784-64065803 | Msa0694720:intron | 35.0% |
| !!! | TGCAATGGTTTTGATGATCT+AGG | - | chr4_4:64065887-64065906 | None:intergenic | 35.0% |
| ! | TCATGTGATGTTGTTTGCAA+TGG | - | chr4_4:64065902-64065921 | None:intergenic | 35.0% |
| ! | AGGGATCAAGAAGGATTTTT+AGG | + | chr4_4:64065954-64065973 | Msa0694720:CDS | 35.0% |
| ! | GGGATCAAGAAGGATTTTTA+GGG | + | chr4_4:64065955-64065974 | Msa0694720:CDS | 35.0% |
| !! | GGATCAAGAAGGATTTTTAG+GGG | + | chr4_4:64065956-64065975 | Msa0694720:CDS | 35.0% |
| TGATGAGGAAAAAGAGACTT+GGG | + | chr4_4:64066086-64066105 | Msa0694720:CDS | 35.0% | |
| ATGGTTCTTGCAGATGATAT+TGG | + | chr4_4:64066127-64066146 | Msa0694720:intron | 35.0% | |
| CTGAAAAAATGGTACTTTGG+AGG | + | chr4_4:64066242-64066261 | Msa0694720:intron | 35.0% | |
| !! | AATGGTACTTTGGAGGATTT+TGG | + | chr4_4:64066249-64066268 | Msa0694720:intron | 35.0% |
| ! | CCAACATCTATCTTTTGCTT+TGG | - | chr4_4:64064832-64064851 | None:intergenic | 35.0% |
| CCAAAGCAAAAGATAGATGT+TGG | + | chr4_4:64064829-64064848 | Msa0694720:five_prime_UTR | 35.0% | |
| ! | TTTTGCTTCAGTTTGTGACT+TGG | - | chr4_4:64064895-64064914 | None:intergenic | 35.0% |
| TGAAAATATGAAAGAGGTGG+AGG | - | chr4_4:64064966-64064985 | None:intergenic | 35.0% | |
| ATGCTCACATTATTCCTCTA+AGG | + | chr4_4:64065188-64065207 | Msa0694720:intron | 35.0% | |
| TGCATTAGTACTTCTTGAGA+TGG | - | chr4_4:64065554-64065573 | None:intergenic | 35.0% | |
| ! | CAATGGATGTAACTAGCTTA+TGG | + | chr4_4:64065624-64065643 | Msa0694720:CDS | 35.0% |
| AACTTTGTGTAGGAACTTGA+GGG | - | chr4_4:64065721-64065740 | None:intergenic | 35.0% | |
| ! | AGGTAGCAACATCTTTTACA+AGG | + | chr4_4:64065783-64065802 | Msa0694720:intron | 35.0% |
| ! | GGTAGCAACATCTTTTACAA+GGG | + | chr4_4:64065784-64065803 | Msa0694720:intron | 35.0% |
| !!! | TGCAATGGTTTTGATGATCT+AGG | - | chr4_4:64065887-64065906 | None:intergenic | 35.0% |
| ! | TCATGTGATGTTGTTTGCAA+TGG | - | chr4_4:64065902-64065921 | None:intergenic | 35.0% |
| ! | AGGGATCAAGAAGGATTTTT+AGG | + | chr4_4:64065954-64065973 | Msa0694720:CDS | 35.0% |
| ! | GGGATCAAGAAGGATTTTTA+GGG | + | chr4_4:64065955-64065974 | Msa0694720:CDS | 35.0% |
| !! | GGATCAAGAAGGATTTTTAG+GGG | + | chr4_4:64065956-64065975 | Msa0694720:CDS | 35.0% |
| TGATGAGGAAAAAGAGACTT+GGG | + | chr4_4:64066086-64066105 | Msa0694720:CDS | 35.0% | |
| ATGGTTCTTGCAGATGATAT+TGG | + | chr4_4:64066127-64066146 | Msa0694720:intron | 35.0% | |
| CTGAAAAAATGGTACTTTGG+AGG | + | chr4_4:64066242-64066261 | Msa0694720:intron | 35.0% | |
| !! | AATGGTACTTTGGAGGATTT+TGG | + | chr4_4:64066249-64066268 | Msa0694720:intron | 35.0% |
| GCTAAAATTCTCAAGAAGGG+AGG | - | chr4_4:64065059-64065078 | None:intergenic | 40.0% | |
| GGTAAGCCAGAGAATTGATT+TGG | - | chr4_4:64065364-64065383 | None:intergenic | 40.0% | |
| TCCATTGCTCTTTGATACCA+TGG | - | chr4_4:64065611-64065630 | None:intergenic | 40.0% | |
| ACTTTGTGTAGGAACTTGAG+GGG | - | chr4_4:64065720-64065739 | None:intergenic | 40.0% | |
| GAACTTTGTGTAGGAACTTG+AGG | - | chr4_4:64065722-64065741 | None:intergenic | 40.0% | |
| ! | TTAGGAAAAGGAGTGTGATG+AGG | + | chr4_4:64066071-64066090 | Msa0694720:CDS | 40.0% |
| GTGATGAGGAAAAAGAGACT+TGG | + | chr4_4:64066085-64066104 | Msa0694720:CDS | 40.0% | |
| ACCATTCTACTAAGAGGACT+AGG | - | chr4_4:64066112-64066131 | None:intergenic | 40.0% | |
| GCAAGAACCATTCTACTAAG+AGG | - | chr4_4:64066118-64066137 | None:intergenic | 40.0% | |
| ATAGGGCATGCGATAAATTG+TGG | + | chr4_4:64066312-64066331 | Msa0694720:intron | 40.0% | |
| TAGGGCATGCGATAAATTGT+GGG | + | chr4_4:64066313-64066332 | Msa0694720:intron | 40.0% | |
| GAAAACCCAGTTGTAGAAAC+TGG | - | chr4_4:64066450-64066469 | None:intergenic | 40.0% | |
| ! | TGTTTTATGGCCCAGCTTTA+TGG | + | chr4_4:64066489-64066508 | Msa0694720:intron | 40.0% |
| GCTAAAATTCTCAAGAAGGG+AGG | - | chr4_4:64065059-64065078 | None:intergenic | 40.0% | |
| GGTAAGCCAGAGAATTGATT+TGG | - | chr4_4:64065364-64065383 | None:intergenic | 40.0% | |
| TCCATTGCTCTTTGATACCA+TGG | - | chr4_4:64065611-64065630 | None:intergenic | 40.0% | |
| ACTTTGTGTAGGAACTTGAG+GGG | - | chr4_4:64065720-64065739 | None:intergenic | 40.0% | |
| GAACTTTGTGTAGGAACTTG+AGG | - | chr4_4:64065722-64065741 | None:intergenic | 40.0% | |
| ! | TTAGGAAAAGGAGTGTGATG+AGG | + | chr4_4:64066071-64066090 | Msa0694720:CDS | 40.0% |
| GTGATGAGGAAAAAGAGACT+TGG | + | chr4_4:64066085-64066104 | Msa0694720:CDS | 40.0% | |
| ACCATTCTACTAAGAGGACT+AGG | - | chr4_4:64066112-64066131 | None:intergenic | 40.0% | |
| GCAAGAACCATTCTACTAAG+AGG | - | chr4_4:64066118-64066137 | None:intergenic | 40.0% | |
| ATAGGGCATGCGATAAATTG+TGG | + | chr4_4:64066312-64066331 | Msa0694720:intron | 40.0% | |
| TAGGGCATGCGATAAATTGT+GGG | + | chr4_4:64066313-64066332 | Msa0694720:intron | 40.0% | |
| GAAAACCCAGTTGTAGAAAC+TGG | - | chr4_4:64066450-64066469 | None:intergenic | 40.0% | |
| ! | TGTTTTATGGCCCAGCTTTA+TGG | + | chr4_4:64066489-64066508 | Msa0694720:intron | 40.0% |
| ! | CTCTGGCTTACCTGCTTTAT+AGG | + | chr4_4:64065372-64065391 | Msa0694720:intron | 45.0% |
| TTTCAAGATGCAGGAAGCCA+TGG | + | chr4_4:64065591-64065610 | Msa0694720:intron | 45.0% | |
| GCCATGGTATCAAAGAGCAA+TGG | + | chr4_4:64065607-64065626 | Msa0694720:CDS | 45.0% | |
| ! | GTAGGAACTTGAGGGGATTT+TGG | - | chr4_4:64065713-64065732 | None:intergenic | 45.0% |
| TTAGCACAGAGGGATCAAGA+AGG | + | chr4_4:64065945-64065964 | Msa0694720:CDS | 45.0% | |
| GCCTAGTCCTCTTAGTAGAA+TGG | + | chr4_4:64066108-64066127 | Msa0694720:CDS | 45.0% | |
| !! | GGTACTTTGGAGGATTTTGG+AGG | + | chr4_4:64066252-64066271 | Msa0694720:intron | 45.0% |
| ! | CTCTGGCTTACCTGCTTTAT+AGG | + | chr4_4:64065372-64065391 | Msa0694720:intron | 45.0% |
| TTTCAAGATGCAGGAAGCCA+TGG | + | chr4_4:64065591-64065610 | Msa0694720:intron | 45.0% | |
| GCCATGGTATCAAAGAGCAA+TGG | + | chr4_4:64065607-64065626 | Msa0694720:CDS | 45.0% | |
| ! | GTAGGAACTTGAGGGGATTT+TGG | - | chr4_4:64065713-64065732 | None:intergenic | 45.0% |
| TTAGCACAGAGGGATCAAGA+AGG | + | chr4_4:64065945-64065964 | Msa0694720:CDS | 45.0% | |
| GCCTAGTCCTCTTAGTAGAA+TGG | + | chr4_4:64066108-64066127 | Msa0694720:CDS | 45.0% | |
| !! | GGTACTTTGGAGGATTTTGG+AGG | + | chr4_4:64066252-64066271 | Msa0694720:intron | 45.0% |
| TAGTGCTAGGCTTAGCACAG+AGG | + | chr4_4:64065934-64065953 | Msa0694720:CDS | 50.0% | |
| AGTGCTAGGCTTAGCACAGA+GGG | + | chr4_4:64065935-64065954 | Msa0694720:CDS | 50.0% | |
| ATCTGAATAGGTGCGCGAGA+AGG | - | chr4_4:64066214-64066233 | None:intergenic | 50.0% | |
| TGTGGGCCAGTTTCTACAAC+TGG | + | chr4_4:64066441-64066460 | Msa0694720:intron | 50.0% | |
| GTGGGCCAGTTTCTACAACT+GGG | + | chr4_4:64066442-64066461 | Msa0694720:intron | 50.0% | |
| TAGTGCTAGGCTTAGCACAG+AGG | + | chr4_4:64065934-64065953 | Msa0694720:CDS | 50.0% | |
| AGTGCTAGGCTTAGCACAGA+GGG | + | chr4_4:64065935-64065954 | Msa0694720:CDS | 50.0% | |
| ATCTGAATAGGTGCGCGAGA+AGG | - | chr4_4:64066214-64066233 | None:intergenic | 50.0% | |
| TGTGGGCCAGTTTCTACAAC+TGG | + | chr4_4:64066441-64066460 | Msa0694720:intron | 50.0% | |
| GTGGGCCAGTTTCTACAACT+GGG | + | chr4_4:64066442-64066461 | Msa0694720:intron | 50.0% | |
| TAGGTGCGCGAGAAGGTTAG+AGG | - | chr4_4:64066207-64066226 | None:intergenic | 55.0% | |
| TAGGTGCGCGAGAAGGTTAG+AGG | - | chr4_4:64066207-64066226 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 64064746 | 64066615 | 64064746 | ID=Msa0694720;Name=Msa0694720 |
| chr4_4 | mRNA | 64064746 | 64066615 | 64064746 | ID=Msa0694720-mRNA-1;Parent=Msa0694720;Name=Msa0694720-mRNA-1;_AED=0.26;_eAED=0.26;_QI=196|0.2|0.16|0.66|0.4|0.5|6|0|194 |
| chr4_4 | exon | 64064746 | 64065030 | 64064746 | ID=Msa0694720-mRNA-1:exon:18227;Parent=Msa0694720-mRNA-1 |
| chr4_4 | exon | 64065604 | 64065724 | 64065604 | ID=Msa0694720-mRNA-1:exon:18228;Parent=Msa0694720-mRNA-1 |
| chr4_4 | exon | 64065785 | 64066015 | 64065785 | ID=Msa0694720-mRNA-1:exon:18229;Parent=Msa0694720-mRNA-1 |
| chr4_4 | exon | 64066025 | 64066129 | 64066025 | ID=Msa0694720-mRNA-1:exon:18230;Parent=Msa0694720-mRNA-1 |
| chr4_4 | exon | 64066532 | 64066540 | 64066532 | ID=Msa0694720-mRNA-1:exon:18231;Parent=Msa0694720-mRNA-1 |
| chr4_4 | exon | 64066586 | 64066615 | 64066586 | ID=Msa0694720-mRNA-1:exon:18232;Parent=Msa0694720-mRNA-1 |
| chr4_4 | five_prime_UTR | 64064746 | 64064941 | 64064746 | ID=Msa0694720-mRNA-1:five_prime_utr;Parent=Msa0694720-mRNA-1 |
| chr4_4 | CDS | 64064942 | 64065030 | 64064942 | ID=Msa0694720-mRNA-1:cds;Parent=Msa0694720-mRNA-1 |
| chr4_4 | CDS | 64065604 | 64065724 | 64065604 | ID=Msa0694720-mRNA-1:cds;Parent=Msa0694720-mRNA-1 |
| chr4_4 | CDS | 64065785 | 64066015 | 64065785 | ID=Msa0694720-mRNA-1:cds;Parent=Msa0694720-mRNA-1 |
| chr4_4 | CDS | 64066025 | 64066129 | 64066025 | ID=Msa0694720-mRNA-1:cds;Parent=Msa0694720-mRNA-1 |
| chr4_4 | CDS | 64066532 | 64066540 | 64066532 | ID=Msa0694720-mRNA-1:cds;Parent=Msa0694720-mRNA-1 |
| chr4_4 | CDS | 64066586 | 64066615 | 64066586 | ID=Msa0694720-mRNA-1:cds;Parent=Msa0694720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
