AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0819170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0819170 MtrunA17_Chr5g0438111 95.229 524 25 0 11 534 12 535 0.0 987
Msa0819170 MtrunA17_Chr3g0114551 52.881 590 195 13 17 528 12 596 1.54e-170 495
Msa0819170 MtrunA17_Chr7g0244501 36.082 582 297 14 1 530 1 559 1.18e-84 273
Msa0819170 MtrunA17_Chr4g0013151 37.848 539 282 14 19 523 83 602 1.03e-70 238
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0819170 AT2G40480.1 40.977 532 232 15 21 534 49 516 2.06e-90 287
Msa0819170 AT3G56270.1 36.404 456 200 17 23 460 37 420 7.25e-48 172
Msa0819170 AT2G38370.1 31.801 522 289 11 30 526 25 504 3.20e-43 161
Msa0819170 AT2G38370.2 31.801 522 289 11 30 526 42 521 8.03e-43 160
Msa0819170 AT3G51720.1 36.934 287 111 7 29 313 11 229 7.19e-19 89.4

Find 95 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTTACCTTATAGTTTA+AGG 0.068954 5_3:+55303346 Msa0819170:three_prime_UTR
TACCTTATAGTTTAAGGTAT+TGG 0.250772 5_3:+55303352 Msa0819170:three_prime_UTR
ACCTTATAGTTTAAGGTATT+GGG 0.251438 5_3:+55303353 Msa0819170:three_prime_UTR
CTCTTCAGGTATTTGAAATT+CGG 0.271157 5_3:-55302528 None:intergenic
CTTCTTCTTCTGATGTGATA+TGG 0.272323 5_3:-55303029 None:intergenic
AAAGAAGAAGAGATGGAAAA+TGG 0.276556 5_3:+55300415 Msa0819170:CDS
TTTGCTGCGTAGAACTTCTT+TGG 0.279623 5_3:-55302642 None:intergenic
AAAGAAGCTGTTACTCGTTT+TGG 0.282290 5_3:+55300496 Msa0819170:CDS
CCTAACAAAGCACTCTCTAT+TGG 0.297613 5_3:+55303252 Msa0819170:three_prime_UTR
TCCCAATACCTTAAACTATA+AGG 0.299821 5_3:-55303354 None:intergenic
TGGGAATTCAAGTGCAAGTT+TGG 0.309034 5_3:+55303272 Msa0819170:three_prime_UTR
TCTTCAGGTATTTGAAATTC+GGG 0.319312 5_3:-55302527 None:intergenic
ACTTGATGTGCTTGAAGAAC+TGG 0.339651 5_3:+55301779 Msa0819170:CDS
CCAATAGAGAGTGCTTTGTT+AGG 0.354929 5_3:-55303252 None:intergenic
TTCCTAAGGGGAATGATATT+CGG 0.360853 5_3:-55303063 None:intergenic
ACATATCGGGCGATGAAGTA+TGG 0.361701 5_3:-55301962 None:intergenic
GATATCTCGCCATTCGCTAT+TGG 0.370039 5_3:+55303145 Msa0819170:three_prime_UTR
TCAAGTGCAAGTTTGGAGTT+TGG 0.371609 5_3:+55303279 Msa0819170:three_prime_UTR
TCACATCAGAAGAAGAAGTT+TGG 0.372747 5_3:+55303034 Msa0819170:CDS
CTAACAAAGCACTCTCTATT+GGG 0.374852 5_3:+55303253 Msa0819170:three_prime_UTR
ATCATCAACTTCTTCTCCAT+TGG 0.377982 5_3:-55300373 None:intergenic
TAATTTCTCGAGAATCGTTT+TGG 0.386491 5_3:-55301808 None:intergenic
TTTATCATTTCGCTTTCCTA+AGG 0.403073 5_3:-55303077 None:intergenic
CGAGCTGTGGCATAAGCATT+AGG 0.405910 5_3:-55303116 None:intergenic
GTGCTGCTGAAGAGGCTCTA+AGG 0.408138 5_3:+55302717 Msa0819170:CDS
TAACTCGGTTAGCAACATAT+CGG 0.412438 5_3:-55301976 None:intergenic
GATGATGATGGAATATTCAT+TGG 0.415888 5_3:+55300390 Msa0819170:CDS
ACTCAATCGTGCGAAAATCT+TGG 0.420277 5_3:+55301870 Msa0819170:CDS
GATGTGATATGGACTGCTTT+TGG 0.421669 5_3:-55303018 None:intergenic
TTCTTCAAGATAGACTCTTC+AGG 0.424981 5_3:-55302542 None:intergenic
TTTCATGAAGATAATATAAG+AGG 0.432477 5_3:+55303318 Msa0819170:three_prime_UTR
TGGTTACCTCTTTACAAACT+TGG 0.449781 5_3:+55300532 Msa0819170:CDS
ACCAGAAGCTCCTGTAGAAA+AGG 0.464298 5_3:+55302187 Msa0819170:CDS
AGAGGAACAAGCAGCAAAGT+TGG 0.467968 5_3:+55301725 Msa0819170:CDS
AACTCGGTTAGCAACATATC+GGG 0.470317 5_3:-55301975 None:intergenic
GCTTCACCAAGTTTGTAAAG+AGG 0.476692 5_3:-55300538 None:intergenic
AAAGCAACGTGCTGCTGAAG+AGG 0.489875 5_3:+55302709 Msa0819170:CDS
CGTTGCTCTAGCTGAAATCA+AGG 0.490440 5_3:+55302412 Msa0819170:CDS
GGTAAAACTATAAACGATCT+CGG 0.493887 5_3:+55302020 Msa0819170:CDS
GGAAGAGCACGCTGAAACAA+AGG 0.495443 5_3:+55302919 Msa0819170:CDS
TTCAGCTAGAGCAACGGCTT+CGG 0.499012 5_3:-55302405 None:intergenic
GCTTCTTTAACAGACTCAAA+TGG 0.500848 5_3:-55300481 None:intergenic
GATTCCTGAAAACTATCTAA+AGG 0.506443 5_3:+55302745 Msa0819170:CDS
TTATCATTTCGCTTTCCTAA+GGG 0.506744 5_3:-55303076 None:intergenic
TGTATGTTAGTTTGAAACAT+GGG 0.508604 5_3:+55303490 Msa0819170:three_prime_UTR
TTTGTCGTAGTATATTCGTC+AGG 0.509274 5_3:-55302890 None:intergenic
AGATCTACTCAGCAGGAAGC+AGG 0.509837 5_3:+55302865 Msa0819170:CDS
GTGGATGTTGAACAGTTCAA+TGG 0.511134 5_3:+55302254 Msa0819170:CDS
CTGCAGAAGTTTCGAAGCAA+GGG 0.512038 5_3:+55302294 Msa0819170:CDS
GGAGAAGAAGTTGATGATGA+TGG 0.521816 5_3:+55300378 Msa0819170:CDS
CTTCGACATAAAGAAAATAG+AGG 0.524074 5_3:+55301707 Msa0819170:CDS
GTAAAACTATAAACGATCTC+GGG 0.525454 5_3:+55302021 Msa0819170:CDS
TGAAGAGTCTATCTTGAAGA+AGG 0.526219 5_3:+55302544 Msa0819170:CDS
CTGAAGAGGCTCTAAGGAGA+TGG 0.529424 5_3:+55302723 Msa0819170:CDS
CAATGAGAGATCTACTCAGC+AGG 0.529935 5_3:+55302858 Msa0819170:CDS
TGCTTCTTCTCTGAATCCAA+TGG 0.531957 5_3:+55300357 Msa0819170:exon
GAAATCAAGGCTCTATCTGC+TGG 0.535146 5_3:+55302425 Msa0819170:CDS
TTTGAATAAGAAGATGAAGA+AGG 0.538398 5_3:+55302067 Msa0819170:CDS
CACCCCTCAAAAGGTTGTGA+AGG 0.541484 5_3:+55302223 Msa0819170:CDS
ATTTAATGTGAGTTTACAGT+GGG 0.542684 5_3:+55303390 Msa0819170:three_prime_UTR
TCAAATGCTTCGAGCAATGA+GGG 0.544411 5_3:+55302952 Msa0819170:CDS
ATCCGAATATCATTCCCCTT+AGG 0.550700 5_3:+55303061 Msa0819170:CDS
GGTATTGGGAGAATATATTG+AGG 0.555792 5_3:+55303367 Msa0819170:three_prime_UTR
GAAACCGAGGATCTTACAGC+TGG 0.555875 5_3:-55302836 None:intergenic
CAACTGAACATGAGAATGAC+GGG 0.556282 5_3:+55302990 Msa0819170:CDS
CTTGATTTCAGCTAGAGCAA+CGG 0.565358 5_3:-55302411 None:intergenic
CTTGATGTGCTTGAAGAACT+GGG 0.566278 5_3:+55301780 Msa0819170:CDS
CCGTCATTCTCATGTTCAGT+TGG 0.568973 5_3:-55302989 None:intergenic
ATATACTACGACAAAGGAGA+TGG 0.572916 5_3:+55302898 Msa0819170:CDS
AAAGAAGCTAAGATGAACCT+TGG 0.577340 5_3:+55301999 Msa0819170:CDS
GGTTGTGAAGGATTTCAAAG+TGG 0.577609 5_3:+55302235 Msa0819170:CDS
AAAGATGGAAGAAGCTGCAA+TGG 0.578367 5_3:+55302379 Msa0819170:CDS
TTAAGACTGCTGAGATGAGG+TGG 0.586641 5_3:+55302345 Msa0819170:CDS
TGTTGAACAGTTCAATGGAA+TGG 0.592209 5_3:+55302259 Msa0819170:CDS
CTACTACTACTAAAGTTGCA+TGG 0.593453 5_3:-55300321 None:intergenic
TCTGCAGAAGTTTCGAAGCA+AGG 0.594473 5_3:+55302293 Msa0819170:CDS
TTGTATGTTAGTTTGAAACA+TGG 0.595393 5_3:+55303489 Msa0819170:three_prime_UTR
GAAGCCAGCTGTAAGATCCT+CGG 0.596662 5_3:+55302832 Msa0819170:CDS
TATCATTTCGCTTTCCTAAG+GGG 0.598187 5_3:-55303075 None:intergenic
GATTTAATGTGAGTTTACAG+TGG 0.599558 5_3:+55303389 Msa0819170:three_prime_UTR
AGCTATCTCTGCTCAAAATG+TGG 0.600750 5_3:+55302139 Msa0819170:CDS
ATATTAAGACTGCTGAGATG+AGG 0.602890 5_3:+55302342 Msa0819170:CDS
CCAACTGAACATGAGAATGA+CGG 0.608552 5_3:+55302989 Msa0819170:CDS
TCATCGAGTTATGCATAGCT+CGG 0.611550 5_3:-55302769 None:intergenic
GTCAAATGCTTCGAGCAATG+AGG 0.623709 5_3:+55302951 Msa0819170:CDS
ATATAAGAACCAATAGCGAA+TGG 0.624917 5_3:-55303154 None:intergenic
TGACGAATATACTACGACAA+AGG 0.630375 5_3:+55302892 Msa0819170:CDS
CTTCAGGTATTTGAAATTCG+GGG 0.632963 5_3:-55302526 None:intergenic
AGATATCGATGCACGAGCTG+TGG 0.636180 5_3:-55303129 None:intergenic
TGCAGAAGTTTCGAAGCAAG+GGG 0.640876 5_3:+55302295 Msa0819170:CDS
TAGATCTCTCATTGAAACCG+AGG 0.641066 5_3:-55302849 None:intergenic
TCGGGCGATGAAGTATGGCA+TGG 0.643983 5_3:-55301957 None:intergenic
ATATGTGTAGAAGTTTGTGT+TGG 0.644034 5_3:+55303203 Msa0819170:three_prime_UTR
AGTTTGTAAAGAGGTAACCA+AGG 0.706258 5_3:-55300529 None:intergenic
TGTTCTCGCATAGAAAATCG+CGG 0.731658 5_3:-55302461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTACTGTTATGATAAAAA+AGG + chr5_3:55300595-55300614 Msa0819170:intron 15.0%
!!! ATTTTGTTTATATAAGCTAT+TGG + chr5_3:55300822-55300841 Msa0819170:intron 15.0%
!!! TTTTGTTTATATAAGCTATT+GGG + chr5_3:55300823-55300842 Msa0819170:intron 15.0%
!!! ACACAATATTCTAAAAAAAT+TGG + chr5_3:55302610-55302629 Msa0819170:CDS 15.0%
!!! TATTTTACTAAGCAGATTTT+TGG - chr5_3:55301041-55301060 None:intergenic 20.0%
!!! GTTATATTTTGACGAATAAT+AGG - chr5_3:55301515-55301534 None:intergenic 20.0%
!! ATTCGTCAAAATATAACAAT+CGG + chr5_3:55301518-55301537 Msa0819170:intron 20.0%
!!! TACTTCATCAATTTTGAAAT+TGG - chr5_3:55302579-55302598 None:intergenic 20.0%
!!! CAATATTCTAAAAAAATTGG+AGG + chr5_3:55302613-55302632 Msa0819170:CDS 20.0%
!! TTTCATGAAGATAATATAAG+AGG + chr5_3:55303318-55303337 Msa0819170:three_prime_UTR 20.0%
!! TTCATTTACCTTATAGTTTA+AGG + chr5_3:55303346-55303365 Msa0819170:three_prime_UTR 20.0%
! AATAGAAAAACAAACAACAC+AGG - chr5_3:55300712-55300731 None:intergenic 25.0%
! ACTATAGAGTGAAAATTTGT+TGG + chr5_3:55300773-55300792 Msa0819170:intron 25.0%
!! AGTTTTTAAATTGCACGATA+AGG - chr5_3:55301154-55301173 None:intergenic 25.0%
! AAGATATGATTAGATGTATC+TGG - chr5_3:55301177-55301196 None:intergenic 25.0%
! AGATACATCTAATCATATCT+TGG + chr5_3:55301176-55301195 Msa0819170:intron 25.0%
!!! AAACATAGAGCATTGAAAAT+TGG + chr5_3:55301344-55301363 Msa0819170:intron 25.0%
!!! GAAAATTGGATTTTGAGATA+AGG + chr5_3:55301358-55301377 Msa0819170:intron 25.0%
!! TCTTACACTTTTCTATTACT+TGG + chr5_3:55301423-55301442 Msa0819170:intron 25.0%
! TTCGTCAAAATATAACAATC+GGG + chr5_3:55301519-55301538 Msa0819170:intron 25.0%
! CATTGTTAGATAGAATGTAT+TGG - chr5_3:55301610-55301629 None:intergenic 25.0%
! TTTGAATAAGAAGATGAAGA+AGG + chr5_3:55302067-55302086 Msa0819170:CDS 25.0%
!! AAAGTAAAATCCTTTTCTAC+AGG - chr5_3:55302200-55302219 None:intergenic 25.0%
!! TATTCTAAAAAAATTGGAGG+AGG + chr5_3:55302616-55302635 Msa0819170:CDS 25.0%
!!! ATTTTAACGGAAGCTTTAAA+CGG + chr5_3:55302668-55302687 Msa0819170:CDS 25.0%
!! CTTATATTTTGTGAGCTTTT+TGG + chr5_3:55303170-55303189 Msa0819170:three_prime_UTR 25.0%
!! TACCTTATAGTTTAAGGTAT+TGG + chr5_3:55303352-55303371 Msa0819170:three_prime_UTR 25.0%
!! ACCTTATAGTTTAAGGTATT+GGG + chr5_3:55303353-55303372 Msa0819170:three_prime_UTR 25.0%
! ATTTAATGTGAGTTTACAGT+GGG + chr5_3:55303390-55303409 Msa0819170:three_prime_UTR 25.0%
!! TTGTATGTTAGTTTGAAACA+TGG + chr5_3:55303489-55303508 Msa0819170:three_prime_UTR 25.0%
!! TGTATGTTAGTTTGAAACAT+GGG + chr5_3:55303490-55303509 Msa0819170:three_prime_UTR 25.0%
!! GATGATGATGGAATATTCAT+TGG + chr5_3:55300390-55300409 Msa0819170:CDS 30.0%
ATTGGAAAAAGAAGAAGAGA+TGG + chr5_3:55300408-55300427 Msa0819170:CDS 30.0%
AAAGAAGAAGAGATGGAAAA+TGG + chr5_3:55300415-55300434 Msa0819170:CDS 30.0%
! AAATGTAAAATCGACTTCAC+TGG + chr5_3:55300626-55300645 Msa0819170:intron 30.0%
! AATGTAAAATCGACTTCACT+GGG + chr5_3:55300627-55300646 Msa0819170:intron 30.0%
ATTGTCAGACCAAACTAAAT+GGG - chr5_3:55300891-55300910 None:intergenic 30.0%
TAGTGAATTGCGAAAAATTG+AGG + chr5_3:55301011-55301030 Msa0819170:intron 30.0%
GACTTATTTCAACTACTATG+TGG - chr5_3:55301078-55301097 None:intergenic 30.0%
AATCACACAATAATGACACT+TGG - chr5_3:55301242-55301261 None:intergenic 30.0%
!! GTAGAATAGTTTTACACTGT+CGG + chr5_3:55301277-55301296 Msa0819170:intron 30.0%
ACATCAGAGTGAATTACAAA+GGG - chr5_3:55301653-55301672 None:intergenic 30.0%
AACATCAGAGTGAATTACAA+AGG - chr5_3:55301654-55301673 None:intergenic 30.0%
CTTCGACATAAAGAAAATAG+AGG + chr5_3:55301707-55301726 Msa0819170:CDS 30.0%
! TAATTTCTCGAGAATCGTTT+TGG - chr5_3:55301811-55301830 None:intergenic 30.0%
! TTCGCAATATTTTCTCTTGA+CGG - chr5_3:55301929-55301948 None:intergenic 30.0%
!! CATCTTAGCTTCTTTTAACT+CGG - chr5_3:55301994-55302013 None:intergenic 30.0%
!! GATCGTTTATAGTTTTACCA+AGG - chr5_3:55302019-55302038 None:intergenic 30.0%
GGTAAAACTATAAACGATCT+CGG + chr5_3:55302020-55302039 Msa0819170:CDS 30.0%
GTAAAACTATAAACGATCTC+GGG + chr5_3:55302021-55302040 Msa0819170:CDS 30.0%
!!! CTTTGTCATTGCTTCTTTTT+TGG - chr5_3:55302165-55302184 None:intergenic 30.0%
! TCTTCAGGTATTTGAAATTC+GGG - chr5_3:55302530-55302549 None:intergenic 30.0%
! CTCTTCAGGTATTTGAAATT+CGG - chr5_3:55302531-55302550 None:intergenic 30.0%
! ACGCAGCAAAGAAATTTTAA+CGG + chr5_3:55302655-55302674 Msa0819170:CDS 30.0%
GATTCCTGAAAACTATCTAA+AGG + chr5_3:55302745-55302764 Msa0819170:CDS 30.0%
TTATCATTTCGCTTTCCTAA+GGG - chr5_3:55303079-55303098 None:intergenic 30.0%
TTTATCATTTCGCTTTCCTA+AGG - chr5_3:55303080-55303099 None:intergenic 30.0%
ATATAAGAACCAATAGCGAA+TGG - chr5_3:55303157-55303176 None:intergenic 30.0%
!! TATTTTGTGAGCTTTTTGGT+TGG + chr5_3:55303174-55303193 Msa0819170:three_prime_UTR 30.0%
ATATGTGTAGAAGTTTGTGT+TGG + chr5_3:55303203-55303222 Msa0819170:three_prime_UTR 30.0%
TCCCAATACCTTAAACTATA+AGG - chr5_3:55303357-55303376 None:intergenic 30.0%
GATTTAATGTGAGTTTACAG+TGG + chr5_3:55303389-55303408 Msa0819170:three_prime_UTR 30.0%
CTACTACTACTAAAGTTGCA+TGG - chr5_3:55300324-55300343 None:intergenic 35.0%
ATCATCAACTTCTTCTCCAT+TGG - chr5_3:55300376-55300395 None:intergenic 35.0%
GCTTCTTTAACAGACTCAAA+TGG - chr5_3:55300484-55300503 None:intergenic 35.0%
! AAAGAAGCTGTTACTCGTTT+TGG + chr5_3:55300496-55300515 Msa0819170:CDS 35.0%
AGTTTGTAAAGAGGTAACCA+AGG - chr5_3:55300532-55300551 None:intergenic 35.0%
TGGTTACCTCTTTACAAACT+TGG + chr5_3:55300532-55300551 Msa0819170:CDS 35.0%
! ATGTAAAATCGACTTCACTG+GGG + chr5_3:55300628-55300647 Msa0819170:intron 35.0%
TGCAGAAAACCCATTTAGTT+TGG + chr5_3:55300879-55300898 Msa0819170:intron 35.0%
CATTGTCAGACCAAACTAAA+TGG - chr5_3:55300892-55300911 None:intergenic 35.0%
! TTGGTCTGACAATGTTACTT+TGG + chr5_3:55300898-55300917 Msa0819170:intron 35.0%
!! TGGTCTGACAATGTTACTTT+GGG + chr5_3:55300899-55300918 Msa0819170:intron 35.0%
ATATCAGATTCGATTGTCCT+CGG + chr5_3:55300946-55300965 Msa0819170:intron 35.0%
CTTAGTAAAATAGCAGACAG+AGG + chr5_3:55301049-55301068 Msa0819170:intron 35.0%
TGTAAGATCAGAGTCGAATT+TGG - chr5_3:55301410-55301429 None:intergenic 35.0%
ATAATAGGCACTAACAAGAC+AGG - chr5_3:55301500-55301519 None:intergenic 35.0%
ACGAGTATGTGAAAATCACA+AGG - chr5_3:55301583-55301602 None:intergenic 35.0%
CATCAGAGTGAATTACAAAG+GGG - chr5_3:55301652-55301671 None:intergenic 35.0%
TAACTCGGTTAGCAACATAT+CGG - chr5_3:55301979-55301998 None:intergenic 35.0%
AAAGAAGCTAAGATGAACCT+TGG + chr5_3:55301999-55302018 Msa0819170:CDS 35.0%
! AATCCTTCACAACCTTTTGA+GGG - chr5_3:55302229-55302248 None:intergenic 35.0%
! AAATCCTTCACAACCTTTTG+AGG - chr5_3:55302230-55302249 None:intergenic 35.0%
TGTTGAACAGTTCAATGGAA+TGG + chr5_3:55302259-55302278 Msa0819170:CDS 35.0%
ATATTAAGACTGCTGAGATG+AGG + chr5_3:55302342-55302361 Msa0819170:CDS 35.0%
! CTTCAGGTATTTGAAATTCG+GGG - chr5_3:55302529-55302548 None:intergenic 35.0%
TTCTTCAAGATAGACTCTTC+AGG - chr5_3:55302545-55302564 None:intergenic 35.0%
TGAAGAGTCTATCTTGAAGA+AGG + chr5_3:55302544-55302563 Msa0819170:CDS 35.0%
TTTGTCGTAGTATATTCGTC+AGG - chr5_3:55302893-55302912 None:intergenic 35.0%
TGACGAATATACTACGACAA+AGG + chr5_3:55302892-55302911 Msa0819170:CDS 35.0%
ATATACTACGACAAAGGAGA+TGG + chr5_3:55302898-55302917 Msa0819170:CDS 35.0%
CTTCTTCTTCTGATGTGATA+TGG - chr5_3:55303032-55303051 None:intergenic 35.0%
TCACATCAGAAGAAGAAGTT+TGG + chr5_3:55303034-55303053 Msa0819170:CDS 35.0%
TTCCTAAGGGGAATGATATT+CGG - chr5_3:55303066-55303085 None:intergenic 35.0%
TATCATTTCGCTTTCCTAAG+GGG - chr5_3:55303078-55303097 None:intergenic 35.0%
! CTAACAAAGCACTCTCTATT+GGG + chr5_3:55303253-55303272 Msa0819170:three_prime_UTR 35.0%
! GGTATTGGGAGAATATATTG+AGG + chr5_3:55303367-55303386 Msa0819170:three_prime_UTR 35.0%
TGCTTCTTCTCTGAATCCAA+TGG + chr5_3:55300357-55300376 Msa0819170:exon 40.0%
!! GGAGAAGAAGTTGATGATGA+TGG + chr5_3:55300378-55300397 Msa0819170:CDS 40.0%
GCTTCACCAAGTTTGTAAAG+AGG - chr5_3:55300541-55300560 None:intergenic 40.0%
ACAAACAACACAGGACTTCA+TGG - chr5_3:55300703-55300722 None:intergenic 40.0%
CCAAACTAGTACACTGGTAT+TGG - chr5_3:55300974-55300993 None:intergenic 40.0%
CCAATACCAGTGTACTAGTT+TGG + chr5_3:55300971-55300990 Msa0819170:intron 40.0%
AAGAAGCCAAACTAGTACAC+TGG - chr5_3:55300980-55300999 None:intergenic 40.0%
GAAAATAACAGCCACCATTC+AGG - chr5_3:55301113-55301132 None:intergenic 40.0%
ACTTGATGTGCTTGAAGAAC+TGG + chr5_3:55301779-55301798 Msa0819170:CDS 40.0%
CTTGATGTGCTTGAAGAACT+GGG + chr5_3:55301780-55301799 Msa0819170:CDS 40.0%
ACTCAATCGTGCGAAAATCT+TGG + chr5_3:55301870-55301889 Msa0819170:CDS 40.0%
! GCAATATTTTCTCTTGACGG+TGG - chr5_3:55301926-55301945 None:intergenic 40.0%
AACTCGGTTAGCAACATATC+GGG - chr5_3:55301978-55301997 None:intergenic 40.0%
!! AGGAAAGACTTTTTCTCGAG+AGG + chr5_3:55302087-55302106 Msa0819170:CDS 40.0%
AGCTATCTCTGCTCAAAATG+TGG + chr5_3:55302139-55302158 Msa0819170:CDS 40.0%
! TACTTTTGACACCCCTCAAA+AGG + chr5_3:55302214-55302233 Msa0819170:CDS 40.0%
! ATCCTTCACAACCTTTTGAG+GGG - chr5_3:55302228-55302247 None:intergenic 40.0%
GGTTGTGAAGGATTTCAAAG+TGG + chr5_3:55302235-55302254 Msa0819170:CDS 40.0%
GTGGATGTTGAACAGTTCAA+TGG + chr5_3:55302254-55302273 Msa0819170:CDS 40.0%
! GTGGTTTGCAGCTAAAAAGA+TGG + chr5_3:55302364-55302383 Msa0819170:CDS 40.0%
AAAGATGGAAGAAGCTGCAA+TGG + chr5_3:55302379-55302398 Msa0819170:CDS 40.0%
CTTGATTTCAGCTAGAGCAA+CGG - chr5_3:55302414-55302433 None:intergenic 40.0%
TGTTCTCGCATAGAAAATCG+CGG - chr5_3:55302464-55302483 None:intergenic 40.0%
TTTGCTGCGTAGAACTTCTT+TGG - chr5_3:55302645-55302664 None:intergenic 40.0%
! CGGTCCTTTAGATAGTTTTC+AGG - chr5_3:55302752-55302771 None:intergenic 40.0%
TCATCGAGTTATGCATAGCT+CGG - chr5_3:55302772-55302791 None:intergenic 40.0%
TAGATCTCTCATTGAAACCG+AGG - chr5_3:55302852-55302871 None:intergenic 40.0%
TCAAATGCTTCGAGCAATGA+GGG + chr5_3:55302952-55302971 Msa0819170:CDS 40.0%
CCAACTGAACATGAGAATGA+CGG + chr5_3:55302989-55303008 Msa0819170:CDS 40.0%
CAACTGAACATGAGAATGAC+GGG + chr5_3:55302990-55303009 Msa0819170:CDS 40.0%
!! GATGTGATATGGACTGCTTT+TGG - chr5_3:55303021-55303040 None:intergenic 40.0%
ATCCGAATATCATTCCCCTT+AGG + chr5_3:55303061-55303080 Msa0819170:CDS 40.0%
!! CCAATAGAGAGTGCTTTGTT+AGG - chr5_3:55303255-55303274 None:intergenic 40.0%
! CCTAACAAAGCACTCTCTAT+TGG + chr5_3:55303252-55303271 Msa0819170:three_prime_UTR 40.0%
TGGGAATTCAAGTGCAAGTT+TGG + chr5_3:55303272-55303291 Msa0819170:three_prime_UTR 40.0%
! TCAAGTGCAAGTTTGGAGTT+TGG + chr5_3:55303279-55303298 Msa0819170:three_prime_UTR 40.0%
! GAAGCTGTTACTCGTTTTGG+TGG + chr5_3:55300499-55300518 Msa0819170:CDS 45.0%
!! GTTACTCGTTTTGGTGGAAG+TGG + chr5_3:55300505-55300524 Msa0819170:CDS 45.0%
TCTACGGAACCAGAGATTCT+GGG - chr5_3:55300660-55300679 None:intergenic 45.0%
ACTTCATGGCCCAATGGATA+AGG - chr5_3:55300689-55300708 None:intergenic 45.0%
TCATCTAGCAGCAACCTGAA+TGG + chr5_3:55301096-55301115 Msa0819170:intron 45.0%
GGGACTAACAAGATGCGTTA+GGG + chr5_3:55301539-55301558 Msa0819170:intron 45.0%
AGAGGAACAAGCAGCAAAGT+TGG + chr5_3:55301725-55301744 Msa0819170:CDS 45.0%
! GACGGTGGACAATCTTTTCA+GGG - chr5_3:55301911-55301930 None:intergenic 45.0%
! TGACGGTGGACAATCTTTTC+AGG - chr5_3:55301912-55301931 None:intergenic 45.0%
ACATATCGGGCGATGAAGTA+TGG - chr5_3:55301965-55301984 None:intergenic 45.0%
!! GACTTTTTCTCGAGAGGACA+CGG + chr5_3:55302093-55302112 Msa0819170:CDS 45.0%
!! ACTTTTTCTCGAGAGGACAC+GGG + chr5_3:55302094-55302113 Msa0819170:CDS 45.0%
! TTTTCTACAGGAGCTTCTGG+TGG - chr5_3:55302188-55302207 None:intergenic 45.0%
ACCAGAAGCTCCTGTAGAAA+AGG + chr5_3:55302187-55302206 Msa0819170:CDS 45.0%
! TCCTTTTCTACAGGAGCTTC+TGG - chr5_3:55302191-55302210 None:intergenic 45.0%
TCTGCAGAAGTTTCGAAGCA+AGG + chr5_3:55302293-55302312 Msa0819170:CDS 45.0%
CTGCAGAAGTTTCGAAGCAA+GGG + chr5_3:55302294-55302313 Msa0819170:CDS 45.0%
TGCAGAAGTTTCGAAGCAAG+GGG + chr5_3:55302295-55302314 Msa0819170:CDS 45.0%
TTAAGACTGCTGAGATGAGG+TGG + chr5_3:55302345-55302364 Msa0819170:CDS 45.0%
CGTTGCTCTAGCTGAAATCA+AGG + chr5_3:55302412-55302431 Msa0819170:CDS 45.0%
GAAATCAAGGCTCTATCTGC+TGG + chr5_3:55302425-55302444 Msa0819170:CDS 45.0%
CAATGAGAGATCTACTCAGC+AGG + chr5_3:55302858-55302877 Msa0819170:CDS 45.0%
GTCAAATGCTTCGAGCAATG+AGG + chr5_3:55302951-55302970 Msa0819170:CDS 45.0%
CCGTCATTCTCATGTTCAGT+TGG - chr5_3:55302992-55303011 None:intergenic 45.0%
GATATCTCGCCATTCGCTAT+TGG + chr5_3:55303145-55303164 Msa0819170:three_prime_UTR 45.0%
!! TAAATAATAAATAATAGTAT+CGG - chr5_3:55301318-55301337 None:intergenic 5.0%
!! GTTTTGGTGGAAGTGGTCCT+TGG + chr5_3:55300512-55300531 Msa0819170:CDS 50.0%
GTCTACGGAACCAGAGATTC+TGG - chr5_3:55300661-55300680 None:intergenic 50.0%
!! ATGGATAAGGCGCTGGTCTA+CGG - chr5_3:55300676-55300695 None:intergenic 50.0%
TAGACCAGCGCCTTATCCAT+TGG + chr5_3:55300676-55300695 Msa0819170:intron 50.0%
AGACCAGCGCCTTATCCATT+GGG + chr5_3:55300677-55300696 Msa0819170:intron 50.0%
TCTAGCAGCAACCTGAATGG+TGG + chr5_3:55301099-55301118 Msa0819170:intron 50.0%
CGGGACTAACAAGATGCGTT+AGG + chr5_3:55301538-55301557 Msa0819170:intron 50.0%
CACCCCTCAAAAGGTTGTGA+AGG + chr5_3:55302223-55302242 Msa0819170:CDS 50.0%
TTCAGCTAGAGCAACGGCTT+CGG - chr5_3:55302408-55302427 None:intergenic 50.0%
! AAAGCAACGTGCTGCTGAAG+AGG + chr5_3:55302709-55302728 Msa0819170:CDS 50.0%
!! CTGAAGAGGCTCTAAGGAGA+TGG + chr5_3:55302723-55302742 Msa0819170:CDS 50.0%
GAAGCCAGCTGTAAGATCCT+CGG + chr5_3:55302832-55302851 Msa0819170:CDS 50.0%
GAAACCGAGGATCTTACAGC+TGG - chr5_3:55302839-55302858 None:intergenic 50.0%
AGATCTACTCAGCAGGAAGC+AGG + chr5_3:55302865-55302884 Msa0819170:CDS 50.0%
! GGAAGAGCACGCTGAAACAA+AGG + chr5_3:55302919-55302938 Msa0819170:CDS 50.0%
CGAGCTGTGGCATAAGCATT+AGG - chr5_3:55303119-55303138 None:intergenic 50.0%
AGATATCGATGCACGAGCTG+TGG - chr5_3:55303132-55303151 None:intergenic 50.0%
GGGATCGAACCCAGAATCTC+TGG + chr5_3:55300648-55300667 Msa0819170:intron 55.0%
CACAGGACTTCATGGCCCAA+TGG - chr5_3:55300695-55300714 None:intergenic 55.0%
!! GTACACTGGTATTGGCACCG+AGG - chr5_3:55300966-55300985 None:intergenic 55.0%
TCGGGCGATGAAGTATGGCA+TGG - chr5_3:55301960-55301979 None:intergenic 55.0%
! GTGCTGCTGAAGAGGCTCTA+AGG + chr5_3:55302717-55302736 Msa0819170:CDS 55.0%
TGGCCCAATGGATAAGGCGC+TGG - chr5_3:55300683-55300702 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 55300266 55303581 55300266 ID=Msa0819170;Name=Msa0819170
chr5_3 mRNA 55300266 55303581 55300266 ID=Msa0819170-mRNA-1;Parent=Msa0819170;Name=Msa0819170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=110|1|1|1|1|1|2|473|534
chr5_3 exon 55300266 55300564 55300266 ID=Msa0819170-mRNA-1:exon:16812;Parent=Msa0819170-mRNA-1
chr5_3 exon 55301693 55303581 55301693 ID=Msa0819170-mRNA-1:exon:16813;Parent=Msa0819170-mRNA-1
chr5_3 five_prime_UTR 55300266 55300375 55300266 ID=Msa0819170-mRNA-1:five_prime_utr;Parent=Msa0819170-mRNA-1
chr5_3 CDS 55300376 55300564 55300376 ID=Msa0819170-mRNA-1:cds;Parent=Msa0819170-mRNA-1
chr5_3 CDS 55301693 55303108 55301693 ID=Msa0819170-mRNA-1:cds;Parent=Msa0819170-mRNA-1
chr5_3 three_prime_UTR 55303109 55303581 55303109 ID=Msa0819170-mRNA-1:three_prime_utr;Parent=Msa0819170-mRNA-1
Gene Sequence

>Msa0819170

ATGGAGAAGAAGTTGATGATGATGGAATATTCATTGGAAAAAGAAGAAGAGATGGAAAATGGAATAAGAAGAGTGAGTTCAAGAGCTGAAGTTGATACATCAATGCCATTTGAGTCTGTTAAAGAAGCTGTTACTCGTTTTGGTGGAAGTGGTCCTTGGTTACCTCTTTACAAACTTGGTGAAGCTTATAACAGCATTGAAGACTTCGACATAAAGAAAATAGAGGAACAAGCAGCAAAGTTGGAAAAAGATTTGATTATGAAAGAACTCGAAACACTTGATGTGCTTGAAGAACTGGGATCTGCCAAAACGATTCTCGAGAAATTAAAGCAGCAGCTACAATCTGAAGCATTGAAATGTGCTTCAACTCAATCGTGCGAAAATCTTGGATCTCTTGTTAAAAACCCTGAAAAGATTGTCCACCGTCAAGAGAAAATATTGCGAATTTCAAGTCCATGCCATACTTCATCGCCCGATATGTTGCTAACCGAGTTAAAAGAAGCTAAGATGAACCTTGGTAAAACTATAAACGATCTCGGGACAATACAATCTTCTGTCGAAACTTTGAATAAGAAGATGAAGAAGGAAAGACTTTTTCTCGAGAGGACACGGGAGAATCTACAATCAAAGTTTGCAGCTATCTCTGCTCAAAATGTGGCCAAAAAAGAAGCAATGACAAAGCCACCAGAAGCTCCTGTAGAAAAGGATTTTACTTTTGACACCCCTCAAAAGGTTGTGAAGGATTTCAAAGTGGATGTTGAACAGTTCAATGGAATGGTTGAAACAAGATCTGCAGAAGTTTCGAAGCAAGGGGTTGAGCATGAAGAGAATGAGTTTAATATTAAGACTGCTGAGATGAGGTGGTTTGCAGCTAAAAAGATGGAAGAAGCTGCAATGGCAGCCGAAGCCGTTGCTCTAGCTGAAATCAAGGCTCTATCTGCTGGTGCTGATATATCACCGCGATTTTCTATGCGAGAACATCAGAAAGTGACTTCTGCATTAGAGTTATACTCTACTCTAAACCCCGAATTTCAAATACCTGAAGAGTCTATCTTGAAGAAGGTAATACATGCCAATTTCAAAATTGATGAAGTAAATGCTTCTAAACACAATATTCTAAAAAAATTGGAGGAGGCAACCAAAGAAGTTCTACGCAGCAAAGAAATTTTAACGGAAGCTTTAAACGGTATTGAAACTGCAAACAGAAAGCAACGTGCTGCTGAAGAGGCTCTAAGGAGATGGATTCCTGAAAACTATCTAAAGGACCGAGCTATGCATAACTCGATGAAGCGAAACAAGTTCAATCAAGTTGAAAAGTGTCAAACTATGAAGCCAGCTGTAAGATCCTCGGTTTCAATGAGAGATCTACTCAGCAGGAAGCAGGTTCCTGACGAATATACTACGACAAAGGAGATGGAAGAGCACGCTGAAACAAAGGTAGCGTTGAGTCAAATGCTTCGAGCAATGAGGGAAAATCAAACTCTTCCAACTGAACATGAGAATGACGGGAGCGACCAAAAGCAGTCCATATCACATCAGAAGAAGAAGTTTGGATTCATCCGAATATCATTCCCCTTAGGAAAGCGAAATGATAAAAAGACATGA

Protein sequence

>Msa0819170

MEKKLMMMEYSLEKEEEMENGIRRVSSRAEVDTSMPFESVKEAVTRFGGSGPWLPLYKLGEAYNSIEDFDIKKIEEQAAKLEKDLIMKELETLDVLEELGSAKTILEKLKQQLQSEALKCASTQSCENLGSLVKNPEKIVHRQEKILRISSPCHTSSPDMLLTELKEAKMNLGKTINDLGTIQSSVETLNKKMKKERLFLERTRENLQSKFAAISAQNVAKKEAMTKPPEAPVEKDFTFDTPQKVVKDFKVDVEQFNGMVETRSAEVSKQGVEHEENEFNIKTAEMRWFAAKKMEEAAMAAEAVALAEIKALSAGADISPRFSMREHQKVTSALELYSTLNPEFQIPEESILKKVIHANFKIDEVNASKHNILKKLEEATKEVLRSKEILTEALNGIETANRKQRAAEEALRRWIPENYLKDRAMHNSMKRNKFNQVEKCQTMKPAVRSSVSMRDLLSRKQVPDEYTTTKEMEEHAETKVALSQMLRAMRENQTLPTEHENDGSDQKQSISHQKKKFGFIRISFPLGKRNDKKT*