AlfalfaGEDB | Msa0699980

M. sativa cultivar zhongmu-4 / Msa0699980

KEGG: -
GO: -
PFAM: PF03763.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699980	XP_013446495.1	88.469	529	29	2	1	498	1	528	0.0	954

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699980	sp\|Q7XII4\|REM41_ORYSJ	33.621	116	77	0	372	487	195	310	1.78e-12	71.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699980	A0A072TSX5	88.469	529	29	2	1	498	1	528	0.0	954

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0139670	Msa0699980	0.801138	1.037069e-48	-8.615850e-47
Msa0241830	Msa0699980	0.809436	1.893854e-50	-8.615850e-47
Msa0244970	Msa0699980	0.815459	9.146558e-52	-8.615850e-47
Msa0321690	Msa0699980	0.819302	1.247451e-52	-8.615850e-47
Msa0322900	Msa0699980	0.802773	4.785922e-49	-8.615850e-47
Msa0615580	Msa0699980	0.808022	3.797637e-50	-8.615850e-47
Msa0616450	Msa0699980	0.815678	8.172607e-52	-8.615850e-47
Msa0617170	Msa0699980	0.964480	2.222472e-123	-8.615850e-47
Msa0655920	Msa0699980	0.802264	6.093994e-49	-8.615850e-47
Msa0697680	Msa0699980	0.814112	1.818667e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699980	MtrunA17_Chr8g0376741	88.469	529	29	2	1	498	1	528	0.0	954
Msa0699980	MtrunA17_Chr8g0375241	38.448	554	236	17	1	498	1	505	2.87e-77	251
Msa0699980	MtrunA17_Chr8g0377061	39.241	237	109	5	258	493	151	353	5.18e-36	137
Msa0699980	MtrunA17_Chr8g0345191	26.154	390	251	10	121	494	86	454	8.23e-18	85.9
Msa0699980	MtrunA17_Chr1g0153281	24.874	398	241	12	113	494	262	617	2.45e-16	82.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699980	AT1G30320.1	50.000	548	184	18	1	498	1	508	5.86e-155	451
Msa0699980	AT2G02170.1	38.196	521	259	18	1	494	1	485	1.03e-68	228
Msa0699980	AT2G02170.2	38.196	521	259	18	1	494	1	485	1.03e-68	228
Msa0699980	AT2G02170.5	38.196	521	259	18	1	494	1	485	1.03e-68	228
Msa0699980	AT2G02170.4	38.196	521	259	18	1	494	1	485	1.03e-68	228
Msa0699980	AT2G02170.3	41.299	385	185	11	123	494	4	360	4.95e-61	204
Msa0699980	AT2G02170.6	41.299	385	185	11	123	494	4	360	4.95e-61	204
Msa0699980	AT1G67590.1	31.043	393	184	10	105	489	20	333	9.08e-42	152
Msa0699980	AT1G67590.2	29.080	337	152	10	105	433	20	277	8.74e-27	109
Msa0699980	AT1G53860.1	27.072	362	188	11	127	477	119	415	7.32e-16	80.1

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Find 140 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTGCTGCTTTGTGGG+AGG	0.698856	4_4:+70796268	Msa0699980:CDS
AAACTGAGGATGAAGTTATT+AGG	0.255888	4_4:+70794575	Msa0699980:CDS
AAATCGCTTGCCAACAAGTA+TGG	0.364627	4_4:+70795360	Msa0699980:CDS
AACTGAGGATGAAGTTATTA+GGG	0.391166	4_4:+70794576	Msa0699980:CDS
AACTTCATCCTCAGTTTACT+AGG	0.419998	4_4:-70794569	None:intergenic
AACTTGCAGATTAAAACGTG+AGG	0.659352	4_4:+70796391	Msa0699980:intron
AAGAAATGAAGATAAAGACT+AGG	0.548657	4_4:+70796111	Msa0699980:CDS
AAGAAGTGTTTGTGTTGTGT+TGG	0.448523	4_4:-70793570	None:intergenic
AAGGTTCTTGACTTGGCAAC+GGG	0.361658	4_4:-70795923	None:intergenic
AAGTCAATGTCCCATAAGTA+TGG	0.393607	4_4:+70797414	Msa0699980:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATGCAAAAGAGAAGATGA+TGG	-	chr4_4:70793734-70793753	None:intergenic	30.0%
AAATCAAGGTAAAGGAATGT+TGG	-	chr4_4:70793855-70793874	None:intergenic	30.0%
AGAAGATGAAATCAAGGTAA+AGG	-	chr4_4:70793863-70793882	None:intergenic	30.0%
TTTACCTTGATTTCATCTTC+TGG	+	chr4_4:70793862-70793881	Msa0699980:intron	30.0%
TTACCTTGATTTCATCTTCT+GGG	+	chr4_4:70793863-70793882	Msa0699980:intron	30.0%
ACCAATTTAACAAAGCTCAT+AGG	-	chr4_4:70794166-70794185	None:intergenic	30.0%
TAATTAATTGTTTGATGCGC+GGG	+	chr4_4:70794277-70794296	Msa0699980:intron	30.0%
TAATTTCTCCTAGTAAACTG+AGG	+	chr4_4:70794561-70794580	Msa0699980:CDS	30.0%
AAACTGAGGATGAAGTTATT+AGG	+	chr4_4:70794575-70794594	Msa0699980:CDS	30.0%
AACTGAGGATGAAGTTATTA+GGG	+	chr4_4:70794576-70794595	Msa0699980:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	70793547	70797476	70793547	ID=Msa0699980;Name=Msa0699980
chr4_4	mRNA	70793547	70797476	70793547	ID=Msa0699980-mRNA-1;Parent=Msa0699980;Name=Msa0699980-mRNA-1;_AED=0.06;_eAED=0.06;_QI=267\|0.8\|0.83\|1\|1\|1\|6\|328\|498
chr4_4	exon	70793547	70793843	70793547	ID=Msa0699980-mRNA-1:exon:21468;Parent=Msa0699980-mRNA-1
chr4_4	exon	70794554	70794623	70794554	ID=Msa0699980-mRNA-1:exon:21469;Parent=Msa0699980-mRNA-1
chr4_4	exon	70794990	70795649	70794990	ID=Msa0699980-mRNA-1:exon:21470;Parent=Msa0699980-mRNA-1
chr4_4	exon	70795871	70796318	70795871	ID=Msa0699980-mRNA-1:exon:21471;Parent=Msa0699980-mRNA-1
chr4_4	exon	70796400	70796481	70796400	ID=Msa0699980-mRNA-1:exon:21472;Parent=Msa0699980-mRNA-1
chr4_4	exon	70796942	70797476	70796942	ID=Msa0699980-mRNA-1:exon:21473;Parent=Msa0699980-mRNA-1
chr4_4	five_prime_UTR	70793547	70793813	70793547	ID=Msa0699980-mRNA-1:five_prime_utr;Parent=Msa0699980-mRNA-1
chr4_4	CDS	70793814	70793843	70793814	ID=Msa0699980-mRNA-1:cds;Parent=Msa0699980-mRNA-1
chr4_4	CDS	70794554	70794623	70794554	ID=Msa0699980-mRNA-1:cds;Parent=Msa0699980-mRNA-1
chr4_4	CDS	70794990	70795649	70794990	ID=Msa0699980-mRNA-1:cds;Parent=Msa0699980-mRNA-1
chr4_4	CDS	70795871	70796318	70795871	ID=Msa0699980-mRNA-1:cds;Parent=Msa0699980-mRNA-1
chr4_4	CDS	70796400	70796481	70796400	ID=Msa0699980-mRNA-1:cds;Parent=Msa0699980-mRNA-1
chr4_4	CDS	70796942	70797148	70796942	ID=Msa0699980-mRNA-1:cds;Parent=Msa0699980-mRNA-1
chr4_4	three_prime_UTR	70797149	70797476	70797149	ID=Msa0699980-mRNA-1:three_prime_utr;Parent=Msa0699980-mRNA-1

Gene Sequence

>Msa0699980

ATGGAGTACGAGAGAATAGAGAAACCTCAGACTGGAATAATTTCTCCTAGTAAACTGAGGATGAAGTTATTAGGGCCTAGGAAGAAGGATGGATCCAACATTACATCTCCAAGCTTAGAAGTTTTGTCATCAAAGCCATTTAGGGATGCGGTACTGGACCAGAGACTAAAGGAAACAGTTCCCATGGAAAATGGTAACACAGGACGTGTAAAGATGCAGCATTTTCATAAGGTTGACACTGGAAGTTCGAGCACAATTCATCCGGTGAGGACAACAGAAGATGAAAATCTTGATTATGACAGTCAAGCTAGCTCATCCAGTTTCGAGTTTGACAAAGGGGAGAGACCGGTGAGCAATCATGTAAGTAGATCCCTGTTGAGACCTATTCCTTCTAAGTGGAACGATGCCGAGAAATGGATAATGAATAGGCAACATATACAAACTCGAAAGAACAACATACATAGCCAAGCAAATCGCTTGCCAACAAGTATGGCAAGGGTTGTTCCAGAGTCCGGTAATTTTGATCATAAGCTCCCGACAAGCAAGGTTGCAGAAACAAAACGAGTTGATTACTGTCAACCAACATCACATTCACATATGGCATTCGAGAAATTCTCTTTTGTTCCATCTGATGCTCATTCGGTTTCTGGTCAAGCACATGGAAAACCACCTGTAGTGGAATCTTTTCCCCAAAGCAAAGATTTAAAGGAAGTAAATGAAGTGGATTTATCTTGTACAACAAGTATAGATGACCAAACAGCATTTCCCGGTATAAGATCTGTTGCCATGAGAGATATGGGAACTGAGATGACCCCGTTGCCAAGTCAAGAACCTTCGCAGACAACCACTCCTGTTGGTTCGGCAACTCCAATTCGCAGCCCAATTTCATCAATGCCTTCAACTCCTAGGAGAGGTGCACCAGCTCCTACGCCTTTGGGCTACACAACCGATGAGGATCCACAGTTTCGAAATGAAAACAGTAGAAAGCAATTGTCCGAAGAAGAAATGAAGATAAAGACTAGGAGAGAGATTGCAGCCCTTGGTATGCAGCTTGGGAAAATGAATATTGCGGCGTGGGCAAGTAAAGATGACGAAGAAAGTAAAAAATCTGCTGGCCGCGACACAGATACTAAAGAACAAGAGAGAATTGAATTTGAAAAACGTGCTGCTTTGTGGGAGGAAGCTGAAAAATCTAAACATACTGCAAGATTAAAACGTGAGGAAATCAAAATTCAAGCATGGGAAAGTCAGCAGAAGGCCAAATTAGAAGCCGAAATGAGAAGAACCGAGGCCAAAGTTGAGCAAATGAGAGCACAGACACATGCAAAAATGGTGAAAAAGATTGCTATGGCGAGGCAAAGATCAGAAGAAAAACGTGCACAAGCTGATTCTAGAAAAAATAGAGAAGCAGAAAGAACTGCAGCTCAAGCAGAATACATACGCCAAACAGGGAAAATGCCCTATTCCAATTACATTACGTGTTGTGGCTGGCTGTGA

Protein sequence

>Msa0699980

MEYERIEKPQTGIISPSKLRMKLLGPRKKDGSNITSPSLEVLSSKPFRDAVLDQRLKETVPMENGNTGRVKMQHFHKVDTGSSSTIHPVRTTEDENLDYDSQASSSSFEFDKGERPVSNHVSRSLLRPIPSKWNDAEKWIMNRQHIQTRKNNIHSQANRLPTSMARVVPESGNFDHKLPTSKVAETKRVDYCQPTSHSHMAFEKFSFVPSDAHSVSGQAHGKPPVVESFPQSKDLKEVNEVDLSCTTSIDDQTAFPGIRSVAMRDMGTEMTPLPSQEPSQTTTPVGSATPIRSPISSMPSTPRRGAPAPTPLGYTTDEDPQFRNENSRKQLSEEEMKIKTRREIAALGMQLGKMNIAAWASKDDEESKKSAGRDTDTKEQERIEFEKRAALWEEAEKSKHTARLKREEIKIQAWESQQKAKLEAEMRRTEAKVEQMRAQTHAKMVKKIAMARQRSEEKRAQADSRKNREAERTAAQAEYIRQTGKMPYSNYITCCGWL*