Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699980 | XP_013446495.1 | 88.469 | 529 | 29 | 2 | 1 | 498 | 1 | 528 | 0.0 | 954 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699980 | sp|Q7XII4|REM41_ORYSJ | 33.621 | 116 | 77 | 0 | 372 | 487 | 195 | 310 | 1.78e-12 | 71.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699980 | A0A072TSX5 | 88.469 | 529 | 29 | 2 | 1 | 498 | 1 | 528 | 0.0 | 954 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0615580 | Msa0699980 | 0.808022 | 3.797637e-50 | -8.615850e-47 |
| Msa0616450 | Msa0699980 | 0.815678 | 8.172607e-52 | -8.615850e-47 |
| Msa0617170 | Msa0699980 | 0.964480 | 2.222472e-123 | -8.615850e-47 |
| Msa0655920 | Msa0699980 | 0.802264 | 6.093994e-49 | -8.615850e-47 |
| Msa0697680 | Msa0699980 | 0.814112 | 1.818667e-51 | -8.615850e-47 |
| Msa0699980 | Msa0855110 | 0.818327 | 2.076609e-52 | -8.615850e-47 |
| Msa0699980 | Msa0892640 | 0.816365 | 5.741424e-52 | -8.615850e-47 |
| Msa0699980 | Msa1089450 | 0.802452 | 5.573640e-49 | -8.615850e-47 |
| Msa0699980 | Msa1234620 | 0.811746 | 5.999825e-51 | -8.615850e-47 |
| Msa0699980 | Msa1337850 | 0.816002 | 6.922932e-52 | -8.615850e-47 |
| Msa0139670 | Msa0699980 | 0.801138 | 1.037069e-48 | -8.615850e-47 |
| Msa0241830 | Msa0699980 | 0.809436 | 1.893854e-50 | -8.615850e-47 |
| Msa0244970 | Msa0699980 | 0.815459 | 9.146558e-52 | -8.615850e-47 |
| Msa0321690 | Msa0699980 | 0.819302 | 1.247451e-52 | -8.615850e-47 |
| Msa0322900 | Msa0699980 | 0.802773 | 4.785922e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699980 | MtrunA17_Chr8g0376741 | 88.469 | 529 | 29 | 2 | 1 | 498 | 1 | 528 | 0.0 | 954 |
| Msa0699980 | MtrunA17_Chr8g0375241 | 38.448 | 554 | 236 | 17 | 1 | 498 | 1 | 505 | 2.87e-77 | 251 |
| Msa0699980 | MtrunA17_Chr8g0377061 | 39.241 | 237 | 109 | 5 | 258 | 493 | 151 | 353 | 5.18e-36 | 137 |
| Msa0699980 | MtrunA17_Chr8g0345191 | 26.154 | 390 | 251 | 10 | 121 | 494 | 86 | 454 | 8.23e-18 | 85.9 |
| Msa0699980 | MtrunA17_Chr1g0153281 | 24.874 | 398 | 241 | 12 | 113 | 494 | 262 | 617 | 2.45e-16 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699980 | AT1G30320.1 | 50.000 | 548 | 184 | 18 | 1 | 498 | 1 | 508 | 5.86e-155 | 451 |
| Msa0699980 | AT2G02170.1 | 38.196 | 521 | 259 | 18 | 1 | 494 | 1 | 485 | 1.03e-68 | 228 |
| Msa0699980 | AT2G02170.2 | 38.196 | 521 | 259 | 18 | 1 | 494 | 1 | 485 | 1.03e-68 | 228 |
| Msa0699980 | AT2G02170.5 | 38.196 | 521 | 259 | 18 | 1 | 494 | 1 | 485 | 1.03e-68 | 228 |
| Msa0699980 | AT2G02170.4 | 38.196 | 521 | 259 | 18 | 1 | 494 | 1 | 485 | 1.03e-68 | 228 |
| Msa0699980 | AT2G02170.3 | 41.299 | 385 | 185 | 11 | 123 | 494 | 4 | 360 | 4.95e-61 | 204 |
| Msa0699980 | AT2G02170.6 | 41.299 | 385 | 185 | 11 | 123 | 494 | 4 | 360 | 4.95e-61 | 204 |
| Msa0699980 | AT1G67590.1 | 31.043 | 393 | 184 | 10 | 105 | 489 | 20 | 333 | 9.08e-42 | 152 |
| Msa0699980 | AT1G67590.2 | 29.080 | 337 | 152 | 10 | 105 | 433 | 20 | 277 | 8.74e-27 | 109 |
| Msa0699980 | AT1G53860.1 | 27.072 | 362 | 188 | 11 | 127 | 477 | 119 | 415 | 7.32e-16 | 80.1 |
| Msa0699980 | AT1G53860.2 | 27.072 | 362 | 188 | 11 | 127 | 477 | 51 | 347 | 7.70e-16 | 79.7 |
Find 140 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGATGCTCATTCGGTTTC+TGG | 0.054743 | 4_4:+70795517 | Msa0699980:CDS |
| CTCTTTGTGTGTAATTAATT+TGG | 0.150842 | 4_4:-70793764 | None:intergenic |
| TCTCATTTCGGCTTCTAATT+TGG | 0.168366 | 4_4:-70796450 | None:intergenic |
| GTTGAAGGCATTGATGAAAT+TGG | 0.206244 | 4_4:-70795990 | None:intergenic |
| TCCCCAAAGCAAAGATTTAA+AGG | 0.207930 | 4_4:+70795576 | Msa0699980:CDS |
| AAACTGAGGATGAAGTTATT+AGG | 0.255888 | 4_4:+70794575 | Msa0699980:CDS |
| AGCCTCTTACACCATACTTA+TGG | 0.262246 | 4_4:-70797425 | None:intergenic |
| CTTCCTTTAAATCTTTGCTT+TGG | 0.266613 | 4_4:-70795579 | None:intergenic |
| GCCACAACACGTAATGTAAT+TGG | 0.275408 | 4_4:-70797117 | None:intergenic |
| TGCACCAGCTCCTACGCCTT+TGG | 0.284602 | 4_4:+70796025 | Msa0699980:CDS |
| GTTTGAAAATTACAAGGTTT+TGG | 0.291440 | 4_4:-70797253 | None:intergenic |
| TTCCTTTAAATCTTTGCTTT+GGG | 0.293865 | 4_4:-70795578 | None:intergenic |
| TCCAGTACCGCATCCCTAAA+TGG | 0.308863 | 4_4:-70795025 | None:intergenic |
| ACACGTAATGTAATTGGAAT+AGG | 0.310425 | 4_4:-70797111 | None:intergenic |
| CCTATTCATTATCCATTTCT+CGG | 0.311474 | 4_4:-70795296 | None:intergenic |
| TCGGCATCGTTCCACTTAGA+AGG | 0.333810 | 4_4:-70795277 | None:intergenic |
| CCCTTTGTCAAACTCGAAAC+TGG | 0.334570 | 4_4:-70795206 | None:intergenic |
| GAAACAGTTCCCATGGAAAA+TGG | 0.340711 | 4_4:+70795061 | Msa0699980:CDS |
| ATCTGTTGCCATGAGAGATA+TGG | 0.344001 | 4_4:+70795887 | Msa0699980:CDS |
| CTTTATCTTCATTTCTTCTT+CGG | 0.345166 | 4_4:-70796105 | None:intergenic |
| AAGGTTCTTGACTTGGCAAC+GGG | 0.361658 | 4_4:-70795923 | None:intergenic |
| TACCTCGGTTCTTCTCATTT+CGG | 0.362154 | 4_4:-70796462 | None:intergenic |
| TGCTCTCATTTGCTCAACTT+TGG | 0.363358 | 4_4:-70796943 | None:intergenic |
| GCACCAGCTCCTACGCCTTT+GGG | 0.363364 | 4_4:+70796026 | Msa0699980:CDS |
| TTTCTGCAACCTTGCTTGTC+GGG | 0.363834 | 4_4:-70795423 | None:intergenic |
| AAATCGCTTGCCAACAAGTA+TGG | 0.364627 | 4_4:+70795360 | Msa0699980:CDS |
| CAGCCCTTGGTATGCAGCTT+GGG | 0.366210 | 4_4:+70796144 | Msa0699980:CDS |
| GCCATTTAGGGATGCGGTAC+TGG | 0.367524 | 4_4:+70795024 | Msa0699980:CDS |
| TTTGTCATCAAAGCCATTTA+GGG | 0.376925 | 4_4:+70795012 | Msa0699980:CDS |
| TTCGACGACCCTATCCTTCA+AGG | 0.377104 | 4_4:-70797209 | None:intergenic |
| TGTTCCATCTGATGCTCATT+CGG | 0.381690 | 4_4:+70795510 | Msa0699980:CDS |
| TAGAAGGAATAGGTCTCAAC+AGG | 0.383911 | 4_4:-70795261 | None:intergenic |
| GTTTCTGCAACCTTGCTTGT+CGG | 0.387691 | 4_4:-70795424 | None:intergenic |
| GCCTCTTACACCATACTTAT+GGG | 0.389667 | 4_4:-70797424 | None:intergenic |
| AACTGAGGATGAAGTTATTA+GGG | 0.391166 | 4_4:+70794576 | Msa0699980:CDS |
| AAGTCAATGTCCCATAAGTA+TGG | 0.393607 | 4_4:+70797414 | Msa0699980:three_prime_UTR |
| GGTGAAAAGATAAGCAATCT+TGG | 0.400192 | 4_4:-70797188 | None:intergenic |
| GCAGAATACATACGCCAAAC+AGG | 0.401814 | 4_4:+70797080 | Msa0699980:CDS |
| ATTAGAGCAAACAACTCAAT+TGG | 0.408849 | 4_4:-70797354 | None:intergenic |
| TCTAATGATGCAGCATTTCC+CGG | 0.413013 | 4_4:+70795858 | Msa0699980:intron |
| GAACTGTTTCCTTTAGTCTC+TGG | 0.416317 | 4_4:-70795048 | None:intergenic |
| AACTTCATCCTCAGTTTACT+AGG | 0.419998 | 4_4:-70794569 | None:intergenic |
| TCTATTCTCTCGTACTCCAT+TGG | 0.423503 | 4_4:-70793811 | None:intergenic |
| CCGAGAAATGGATAATGAAT+AGG | 0.423948 | 4_4:+70795296 | Msa0699980:CDS |
| GATGAAATTGGGCTGCGAAT+TGG | 0.427717 | 4_4:-70795978 | None:intergenic |
| GATGACAAAACTTCTAAGCT+TGG | 0.428034 | 4_4:-70794998 | None:intergenic |
| GAGCTTATGATCAAAATTAC+CGG | 0.430720 | 4_4:-70795401 | None:intergenic |
| ACAACCCTTGCCATACTTGT+TGG | 0.432189 | 4_4:-70795370 | None:intergenic |
| CACGTAATGTAATTGGAATA+GGG | 0.435360 | 4_4:-70797110 | None:intergenic |
| AGTGGAACGATGCCGAGAAA+TGG | 0.438539 | 4_4:+70795284 | Msa0699980:CDS |
| AGATCTTCAACATACCTGTT+TGG | 0.440565 | 4_4:-70795642 | None:intergenic |
| TTGGATCCATCCTTCTTCCT+AGG | 0.443938 | 4_4:-70794599 | None:intergenic |
| ATTGGAGTTGCCGAACCAAC+AGG | 0.447886 | 4_4:-70795960 | None:intergenic |
| AAGAAGTGTTTGTGTTGTGT+TGG | 0.448523 | 4_4:-70793570 | None:intergenic |
| TCCAATTACATTACGTGTTG+TGG | 0.449449 | 4_4:+70797116 | Msa0699980:CDS |
| GTCTGCGAAGGTTCTTGACT+TGG | 0.450199 | 4_4:-70795930 | None:intergenic |
| GACAACCACTCCTGTTGGTT+CGG | 0.450723 | 4_4:+70795950 | Msa0699980:CDS |
| TCATCTTCTGTTGTCCTCAC+CGG | 0.465871 | 4_4:-70795151 | None:intergenic |
| GCAGCCCTTGGTATGCAGCT+TGG | 0.466742 | 4_4:+70796143 | Msa0699980:CDS |
| TTGAAGGCATTGATGAAATT+GGG | 0.468593 | 4_4:-70795989 | None:intergenic |
| TCCCATAAGTATGGTGTAAG+AGG | 0.471375 | 4_4:+70797423 | Msa0699980:three_prime_UTR |
| GCACCTCTCCTAGGAGTTGA+AGG | 0.472388 | 4_4:-70796005 | None:intergenic |
| CATCAATGCCTTCAACTCCT+AGG | 0.472519 | 4_4:+70795997 | Msa0699980:CDS |
| GGATGAAGTTATTAGGGCCT+AGG | 0.474251 | 4_4:+70794582 | Msa0699980:CDS |
| GCAAGGGTTGTTCCAGAGTC+CGG | 0.475806 | 4_4:+70795382 | Msa0699980:CDS |
| ACCAACATCACATTCACATA+TGG | 0.482451 | 4_4:+70795468 | Msa0699980:CDS |
| TGATCAAAATTACCGGACTC+TGG | 0.489006 | 4_4:-70795394 | None:intergenic |
| CCAGTTTCGAGTTTGACAAA+GGG | 0.491171 | 4_4:+70795206 | Msa0699980:CDS |
| AGAAGTGTTTGTGTTGTGTT+GGG | 0.491904 | 4_4:-70793569 | None:intergenic |
| CATGTAAGCAACTTGCGCTC+AGG | 0.494233 | 4_4:-70797277 | None:intergenic |
| TGGGGAAAAGATTCCACTAC+AGG | 0.495981 | 4_4:-70795559 | None:intergenic |
| TCGTTCCACTTAGAAGGAAT+AGG | 0.499778 | 4_4:-70795271 | None:intergenic |
| TCTGTTGCCATGAGAGATAT+GGG | 0.500342 | 4_4:+70795888 | Msa0699980:CDS |
| CATGGCAACAGATCTTATAC+CGG | 0.506420 | 4_4:-70795877 | None:intergenic |
| AGAGAAAGAGAAAGATCCAA+TGG | 0.516098 | 4_4:+70793795 | Msa0699980:exon |
| TAGCCCAAAGGCGTAGGAGC+TGG | 0.518675 | 4_4:-70796029 | None:intergenic |
| TGAGACCTATTCCTTCTAAG+TGG | 0.521862 | 4_4:+70795266 | Msa0699980:CDS |
| TCGGTTTCTGGTCAAGCACA+TGG | 0.522303 | 4_4:+70795529 | Msa0699980:CDS |
| GTTATTAGGGCCTAGGAAGA+AGG | 0.524411 | 4_4:+70794589 | Msa0699980:CDS |
| GTTTGACAAAGGGGAGAGAC+CGG | 0.525316 | 4_4:+70795216 | Msa0699980:CDS |
| GAAGGTTCTTGACTTGGCAA+CGG | 0.526189 | 4_4:-70795924 | None:intergenic |
| AGGAGAGAGATTGCAGCCCT+TGG | 0.526966 | 4_4:+70796131 | Msa0699980:CDS |
| ACAAGTATAGATGACCAAAC+AGG | 0.527668 | 4_4:+70795628 | Msa0699980:CDS |
| TCCTTTAAATCTTTGCTTTG+GGG | 0.528138 | 4_4:-70795577 | None:intergenic |
| CTCAGTTCCCATATCTCTCA+TGG | 0.536233 | 4_4:-70795895 | None:intergenic |
| AAGTTCGAGCACAATTCATC+CGG | 0.540711 | 4_4:+70795132 | Msa0699980:CDS |
| GGAGCTGGTGCACCTCTCCT+AGG | 0.542004 | 4_4:-70796014 | None:intergenic |
| TTTAAAGGAAGTAAATGAAG+TGG | 0.542565 | 4_4:+70795591 | Msa0699980:CDS |
| CGAGAGAATAGAGAAACCTC+AGG | 0.546664 | 4_4:+70793822 | Msa0699980:CDS |
| AAGAAATGAAGATAAAGACT+AGG | 0.548657 | 4_4:+70796111 | Msa0699980:CDS |
| GAGAGAGTTGGAGAAAGAAG+AGG | 0.548698 | 4_4:-70793593 | None:intergenic |
| ATCAAAGCCATTTAGGGATG+CGG | 0.550723 | 4_4:+70795018 | Msa0699980:CDS |
| AGGAAATCAAAATTCAAGCA+TGG | 0.550902 | 4_4:+70796411 | Msa0699980:CDS |
| GGAAATCAAAATTCAAGCAT+GGG | 0.551510 | 4_4:+70796412 | Msa0699980:CDS |
| GAAAATGAATATTGCGGCGT+GGG | 0.554349 | 4_4:+70796166 | Msa0699980:CDS |
| ATTACATTACGTGTTGTGGC+TGG | 0.559591 | 4_4:+70797120 | Msa0699980:CDS |
| TCCAGTTTCGAGTTTGACAA+AGG | 0.560496 | 4_4:+70795205 | Msa0699980:CDS |
| TCGAAACTGTGGATCCTCAT+CGG | 0.563666 | 4_4:-70796057 | None:intergenic |
| GCCATATGTGAATGTGATGT+TGG | 0.565396 | 4_4:-70795469 | None:intergenic |
| ACTAAAGGAAACAGTTCCCA+TGG | 0.568312 | 4_4:+70795054 | Msa0699980:CDS |
| GTATGGTGTAAGAGGCTGTA+GGG | 0.579549 | 4_4:+70797431 | Msa0699980:three_prime_UTR |
| TCGCAGACAACCACTCCTGT+TGG | 0.579751 | 4_4:+70795945 | Msa0699980:CDS |
| TCAGGAGTTTGAAAATTACA+AGG | 0.580529 | 4_4:-70797259 | None:intergenic |
| ACATGGAAAACCACCTGTAG+TGG | 0.584283 | 4_4:+70795546 | Msa0699980:CDS |
| TTGTGTGTAATTAATTTGGA+AGG | 0.586449 | 4_4:-70793760 | None:intergenic |
| ACAGGAGTGGTTGTCTGCGA+AGG | 0.590207 | 4_4:-70795942 | None:intergenic |
| TTTCCCAAGCTGCATACCAA+GGG | 0.594079 | 4_4:-70796147 | None:intergenic |
| GGAAAAGATTCCACTACAGG+TGG | 0.603799 | 4_4:-70795556 | None:intergenic |
| GTTCTTTAGTATCTGTGTCG+CGG | 0.605999 | 4_4:-70796226 | None:intergenic |
| GTTGTGTAGCCCAAAGGCGT+AGG | 0.606013 | 4_4:-70796035 | None:intergenic |
| CAGTTTCGAGTTTGACAAAG+GGG | 0.609310 | 4_4:+70795207 | Msa0699980:CDS |
| TCATCGGTTGTGTAGCCCAA+AGG | 0.610226 | 4_4:-70796041 | None:intergenic |
| GCTTGCCAACAAGTATGGCA+AGG | 0.611719 | 4_4:+70795365 | Msa0699980:CDS |
| TAATGCAAAAGAGAAGATGA+TGG | 0.613512 | 4_4:-70793731 | None:intergenic |
| TTGTTGGCAAGCGATTTGCT+TGG | 0.614077 | 4_4:-70795354 | None:intergenic |
| GCTGTTAATATAAATGTACA+AGG | 0.616736 | 4_4:+70797385 | Msa0699980:three_prime_UTR |
| AGCATGGGAAAGTCAGCAGA+AGG | 0.617084 | 4_4:+70796427 | Msa0699980:CDS |
| CAGAATACATACGCCAAACA+GGG | 0.617750 | 4_4:+70797081 | Msa0699980:CDS |
| TTAGGGCCTAGGAAGAAGGA+TGG | 0.620809 | 4_4:+70794593 | Msa0699980:CDS |
| ATGGCAACAGATCTTATACC+GGG | 0.621195 | 4_4:-70795876 | None:intergenic |
| CTTGCCAACAAGTATGGCAA+GGG | 0.624345 | 4_4:+70795366 | Msa0699980:CDS |
| CTACTTACATGATTGCTCAC+CGG | 0.624396 | 4_4:-70795235 | None:intergenic |
| AGTATGGTGTAAGAGGCTGT+AGG | 0.632019 | 4_4:+70797430 | Msa0699980:three_prime_UTR |
| GGAAAATGAATATTGCGGCG+TGG | 0.638919 | 4_4:+70796165 | Msa0699980:CDS |
| CCCATGGAAAATGGTAACAC+AGG | 0.642223 | 4_4:+70795070 | Msa0699980:CDS |
| GAAACCGAATGAGCATCAGA+TGG | 0.642347 | 4_4:-70795514 | None:intergenic |
| GGTACTGGACCAGAGACTAA+AGG | 0.644572 | 4_4:+70795039 | Msa0699980:CDS |
| TCATAAGCTCCCGACAAGCA+AGG | 0.648251 | 4_4:+70795414 | Msa0699980:CDS |
| ATGCCTTCAACTCCTAGGAG+AGG | 0.654548 | 4_4:+70796002 | Msa0699980:CDS |
| AACTTGCAGATTAAAACGTG+AGG | 0.659352 | 4_4:+70796391 | Msa0699980:intron |
| AGTTGCCGAACCAACAGGAG+TGG | 0.660068 | 4_4:-70795955 | None:intergenic |
| GCTTGGGAAAATGAATATTG+CGG | 0.668278 | 4_4:+70796160 | Msa0699980:CDS |
| AGCCGAAATGAGAAGAACCG+AGG | 0.675110 | 4_4:+70796460 | Msa0699980:CDS |
| CTGTGAGATATATAACATTG+TGG | 0.693122 | 4_4:+70797143 | Msa0699980:exon |
| CGAGCACAATTCATCCGGTG+AGG | 0.693910 | 4_4:+70795137 | Msa0699980:CDS |
| AAAACGTGCTGCTTTGTGGG+AGG | 0.698856 | 4_4:+70796268 | Msa0699980:CDS |
| TTTGGGCTACACAACCGATG+AGG | 0.701696 | 4_4:+70796043 | Msa0699980:CDS |
| TAATTTCTCCTAGTAAACTG+AGG | 0.702685 | 4_4:+70794561 | Msa0699980:CDS |
| AGGTTCTTGACTTGGCAACG+GGG | 0.722190 | 4_4:-70795922 | None:intergenic |
| AGAAGGAATAGGTCTCAACA+GGG | 0.732599 | 4_4:-70795260 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATTGTTGTTATTATT+TGG | + | chr4_4:70793987-70794006 | Msa0699980:intron | 10.0% |
| !! | GAAGTTTAATAAAAAAAAAT+GGG | - | chr4_4:70794056-70794075 | None:intergenic | 10.0% |
| !! | TGAAGTTTAATAAAAAAAAA+TGG | - | chr4_4:70794057-70794076 | None:intergenic | 10.0% |
| !! | ATAATTACATTTAAAAAATC+AGG | - | chr4_4:70796361-70796380 | None:intergenic | 10.0% |
| !! | AAAATTCATTACTTCAAATT+TGG | + | chr4_4:70794114-70794133 | Msa0699980:intron | 15.0% |
| !!! | TTTTTTCTCTTTCAAAAACT+GGG | + | chr4_4:70793935-70793954 | Msa0699980:intron | 20.0% |
| !!! | AATAACAACAATTTTATGAG+AGG | - | chr4_4:70793984-70794003 | None:intergenic | 20.0% |
| !!! | ATATTTCTAAACAAAGCAAA+TGG | + | chr4_4:70794083-70794102 | Msa0699980:intron | 20.0% |
| !! | CAAATCGTGTTAATATTATA+TGG | - | chr4_4:70795675-70795694 | None:intergenic | 20.0% |
| !! | AATCTGAATGAACAATTAAA+AGG | + | chr4_4:70795730-70795749 | Msa0699980:intron | 20.0% |
| !!! | TTATAAAGCATTATGAACTA+AGG | + | chr4_4:70796561-70796580 | Msa0699980:intron | 20.0% |
| !!! | TTATACGTACTTTTTCATAA+GGG | - | chr4_4:70796648-70796667 | None:intergenic | 20.0% |
| !!! | TTTATACGTACTTTTTCATA+AGG | - | chr4_4:70796649-70796668 | None:intergenic | 20.0% |
| !! | TATAAATTTCGCATTGTTTA+TGG | + | chr4_4:70796663-70796682 | Msa0699980:intron | 20.0% |
| !!! | TTCTAAGAGTATAGAAATAA+CGG | - | chr4_4:70796768-70796787 | None:intergenic | 20.0% |
| !!! | ATAATGGAAAGAAAATCATA+TGG | - | chr4_4:70796821-70796840 | None:intergenic | 20.0% |
| !! | TTCACATTGCAATTAAATAA+TGG | - | chr4_4:70796837-70796856 | None:intergenic | 20.0% |
| !! | TTGAAACTATATGCAAATAT+AGG | + | chr4_4:70796920-70796939 | Msa0699980:intron | 20.0% |
| !! | TTGTGTGTAATTAATTTGGA+AGG | - | chr4_4:70793763-70793782 | None:intergenic | 25.0% |
| ! | CTCTTTGTGTGTAATTAATT+TGG | - | chr4_4:70793767-70793786 | None:intergenic | 25.0% |
| !!! | CTTTTTTCTCTTTCAAAAAC+TGG | + | chr4_4:70793934-70793953 | Msa0699980:intron | 25.0% |
| !! | ACAATTTTATGAGAGGAAAA+AGG | - | chr4_4:70793977-70793996 | None:intergenic | 25.0% |
| ! | ACTTCAAATTTGGAAGTAAA+TGG | + | chr4_4:70794124-70794143 | Msa0699980:intron | 25.0% |
| ! | ATAATTAATTGTTTGATGCG+CGG | + | chr4_4:70794276-70794295 | Msa0699980:intron | 25.0% |
| !!! | GTGATATGGGTTAAAATTTT+GGG | + | chr4_4:70794384-70794403 | Msa0699980:intron | 25.0% |
| !!! | TGATATGGGTTAAAATTTTG+GGG | + | chr4_4:70794385-70794404 | Msa0699980:intron | 25.0% |
| ! | ATTAGTTATGAGGCTAAATA+TGG | + | chr4_4:70794507-70794526 | Msa0699980:intron | 25.0% |
| ! | TTCCTTTAAATCTTTGCTTT+GGG | - | chr4_4:70795581-70795600 | None:intergenic | 25.0% |
| ! | TTTAAAGGAAGTAAATGAAG+TGG | + | chr4_4:70795591-70795610 | Msa0699980:CDS | 25.0% |
| ! | CTTTATCTTCATTTCTTCTT+CGG | - | chr4_4:70796108-70796127 | None:intergenic | 25.0% |
| ! | AAGAAATGAAGATAAAGACT+AGG | + | chr4_4:70796111-70796130 | Msa0699980:CDS | 25.0% |
| ! | AAAAATCTAAACATACTGCA+AGG | + | chr4_4:70796297-70796316 | Msa0699980:CDS | 25.0% |
| !! | GTTTGAAAATTACAAGGTTT+TGG | - | chr4_4:70797256-70797275 | None:intergenic | 25.0% |
| ! | GCTGTTAATATAAATGTACA+AGG | + | chr4_4:70797385-70797404 | Msa0699980:three_prime_UTR | 25.0% |
| TAATGCAAAAGAGAAGATGA+TGG | - | chr4_4:70793734-70793753 | None:intergenic | 30.0% | |
| AAATCAAGGTAAAGGAATGT+TGG | - | chr4_4:70793855-70793874 | None:intergenic | 30.0% | |
| AGAAGATGAAATCAAGGTAA+AGG | - | chr4_4:70793863-70793882 | None:intergenic | 30.0% | |
| TTTACCTTGATTTCATCTTC+TGG | + | chr4_4:70793862-70793881 | Msa0699980:intron | 30.0% | |
| TTACCTTGATTTCATCTTCT+GGG | + | chr4_4:70793863-70793882 | Msa0699980:intron | 30.0% | |
| ! | GTAAAAAGCATGAGCTAAAA+TGG | - | chr4_4:70793898-70793917 | None:intergenic | 30.0% |
| !! | TCCTATGAGCTTTGTTAAAT+TGG | + | chr4_4:70794162-70794181 | Msa0699980:intron | 30.0% |
| ACCAATTTAACAAAGCTCAT+AGG | - | chr4_4:70794166-70794185 | None:intergenic | 30.0% | |
| TAATTAATTGTTTGATGCGC+GGG | + | chr4_4:70794277-70794296 | Msa0699980:intron | 30.0% | |
| !! | TTTCTCTCATTTTTCTTCTG+AGG | + | chr4_4:70794355-70794374 | Msa0699980:intron | 30.0% |
| !! | CATTTTTCTTCTGAGGAAAA+CGG | + | chr4_4:70794362-70794381 | Msa0699980:intron | 30.0% |
| !! | GGTGATATGGGTTAAAATTT+TGG | + | chr4_4:70794383-70794402 | Msa0699980:intron | 30.0% |
| !! | GATATGGGTTAAAATTTTGG+GGG | + | chr4_4:70794386-70794405 | Msa0699980:intron | 30.0% |
| ! | TTATGTAGTGTGCTTTAAGT+TGG | + | chr4_4:70794451-70794470 | Msa0699980:intron | 30.0% |
| ! | GTTGTTCTAGATTAGTTATG+AGG | + | chr4_4:70794497-70794516 | Msa0699980:intron | 30.0% |
| TAATTTCTCCTAGTAAACTG+AGG | + | chr4_4:70794561-70794580 | Msa0699980:CDS | 30.0% | |
| AAACTGAGGATGAAGTTATT+AGG | + | chr4_4:70794575-70794594 | Msa0699980:CDS | 30.0% | |
| AACTGAGGATGAAGTTATTA+GGG | + | chr4_4:70794576-70794595 | Msa0699980:CDS | 30.0% | |
| !! | TCTTTGTAGCATTGACATTT+CGG | + | chr4_4:70794749-70794768 | Msa0699980:intron | 30.0% |
| GTGTTTGATACTAATACATG+CGG | + | chr4_4:70794788-70794807 | Msa0699980:intron | 30.0% | |
| ACATTGTAACTTTGTGAAAG+TGG | - | chr4_4:70794829-70794848 | None:intergenic | 30.0% | |
| AGTTACAATGTCAGTATATG+TGG | + | chr4_4:70794838-70794857 | Msa0699980:intron | 30.0% | |
| ! | CGTAGGATTTTGTATTCTTT+TGG | + | chr4_4:70794941-70794960 | Msa0699980:intron | 30.0% |
| ! | TTTTGTCATCAAAGCCATTT+AGG | + | chr4_4:70795011-70795030 | Msa0699980:CDS | 30.0% |
| TTTGTCATCAAAGCCATTTA+GGG | + | chr4_4:70795012-70795031 | Msa0699980:CDS | 30.0% | |
| ! | AAAGATGCAGCATTTTCATA+AGG | + | chr4_4:70795099-70795118 | Msa0699980:CDS | 30.0% |
| CCTATTCATTATCCATTTCT+CGG | - | chr4_4:70795299-70795318 | None:intergenic | 30.0% | |
| GAGCTTATGATCAAAATTAC+CGG | - | chr4_4:70795404-70795423 | None:intergenic | 30.0% | |
| TCCTTTAAATCTTTGCTTTG+GGG | - | chr4_4:70795580-70795599 | None:intergenic | 30.0% | |
| CTTCCTTTAAATCTTTGCTT+TGG | - | chr4_4:70795582-70795601 | None:intergenic | 30.0% | |
| !! | TTGAAGGCATTGATGAAATT+GGG | - | chr4_4:70795992-70796011 | None:intergenic | 30.0% |
| GAAGAAAGTAAAAAATCTGC+TGG | + | chr4_4:70796203-70796222 | Msa0699980:CDS | 30.0% | |
| AGGAAATCAAAATTCAAGCA+TGG | + | chr4_4:70796411-70796430 | Msa0699980:CDS | 30.0% | |
| GGAAATCAAAATTCAAGCAT+GGG | + | chr4_4:70796412-70796431 | Msa0699980:CDS | 30.0% | |
| CTTGAAAAGCTTTCATAAGT+TGG | - | chr4_4:70796604-70796623 | None:intergenic | 30.0% | |
| TGCAATGTGAATTTAGAGAT+AGG | + | chr4_4:70796846-70796865 | Msa0699980:intron | 30.0% | |
| AATGGTGAAAAAGATTGCTA+TGG | + | chr4_4:70796980-70796999 | Msa0699980:CDS | 30.0% | |
| CACGTAATGTAATTGGAATA+GGG | - | chr4_4:70797113-70797132 | None:intergenic | 30.0% | |
| ACACGTAATGTAATTGGAAT+AGG | - | chr4_4:70797114-70797133 | None:intergenic | 30.0% | |
| CTGTGAGATATATAACATTG+TGG | + | chr4_4:70797143-70797162 | Msa0699980:exon | 30.0% | |
| TCAGGAGTTTGAAAATTACA+AGG | - | chr4_4:70797262-70797281 | None:intergenic | 30.0% | |
| ATTAGAGCAAACAACTCAAT+TGG | - | chr4_4:70797357-70797376 | None:intergenic | 30.0% | |
| ! | TAGGGACATTTTATATGCTA+AGG | + | chr4_4:70797449-70797468 | Msa0699980:three_prime_UTR | 30.0% |
| !! | AGAAGTGTTTGTGTTGTGTT+GGG | - | chr4_4:70793572-70793591 | None:intergenic | 35.0% |
| !! | AAGAAGTGTTTGTGTTGTGT+TGG | - | chr4_4:70793573-70793592 | None:intergenic | 35.0% |
| AGAGAAAGAGAAAGATCCAA+TGG | + | chr4_4:70793795-70793814 | Msa0699980:exon | 35.0% | |
| ! | TGATGTTTCTACTGCTTGAA+TGG | + | chr4_4:70794029-70794048 | Msa0699980:intron | 35.0% |
| !! | TGTTGCTTCCTTTACTTTTG+TGG | + | chr4_4:70794230-70794249 | Msa0699980:intron | 35.0% |
| !! | TCCTTTACTTTTGTGGTCAA+TGG | + | chr4_4:70794237-70794256 | Msa0699980:intron | 35.0% |
| TCCATTGACCACAAAAGTAA+AGG | - | chr4_4:70794241-70794260 | None:intergenic | 35.0% | |
| AACTTCATCCTCAGTTTACT+AGG | - | chr4_4:70794572-70794591 | None:intergenic | 35.0% | |
| !! | TGTTCTAGAAGAGTTACTGT+TGG | - | chr4_4:70794621-70794640 | None:intergenic | 35.0% |
| AGTAGGCTATTGACAAATTC+AGG | - | chr4_4:70794665-70794684 | None:intergenic | 35.0% | |
| GATGACAACCTTGATTATGA+AGG | + | chr4_4:70794695-70794714 | Msa0699980:intron | 35.0% | |
| ACAACCTTGATTATGAAGGT+TGG | + | chr4_4:70794699-70794718 | Msa0699980:intron | 35.0% | |
| ATAGCCAACCTTCATAATCA+AGG | - | chr4_4:70794706-70794725 | None:intergenic | 35.0% | |
| CATTAGACAACATTTATCCC+AGG | + | chr4_4:70794896-70794915 | Msa0699980:intron | 35.0% | |
| GATGACAAAACTTCTAAGCT+TGG | - | chr4_4:70795001-70795020 | None:intergenic | 35.0% | |
| ! | CATTTTCATAAGGTTGACAC+TGG | + | chr4_4:70795109-70795128 | Msa0699980:CDS | 35.0% |
| CCGAGAAATGGATAATGAAT+AGG | + | chr4_4:70795296-70795315 | Msa0699980:CDS | 35.0% | |
| ACCAACATCACATTCACATA+TGG | + | chr4_4:70795468-70795487 | Msa0699980:CDS | 35.0% | |
| TCCCCAAAGCAAAGATTTAA+AGG | + | chr4_4:70795576-70795595 | Msa0699980:CDS | 35.0% | |
| ACAAGTATAGATGACCAAAC+AGG | + | chr4_4:70795628-70795647 | Msa0699980:CDS | 35.0% | |
| AGATCTTCAACATACCTGTT+TGG | - | chr4_4:70795645-70795664 | None:intergenic | 35.0% | |
| !! | GTTGAAGGCATTGATGAAAT+TGG | - | chr4_4:70795993-70796012 | None:intergenic | 35.0% |
| ! | CTGTTTTCATTTCGAAACTG+TGG | - | chr4_4:70796071-70796090 | None:intergenic | 35.0% |
| GCTTGGGAAAATGAATATTG+CGG | + | chr4_4:70796160-70796179 | Msa0699980:CDS | 35.0% | |
| !! | TCAGGTTTACTTTTGTCTAG+AGG | - | chr4_4:70796343-70796362 | None:intergenic | 35.0% |
| AACTTGCAGATTAAAACGTG+AGG | + | chr4_4:70796391-70796410 | Msa0699980:intron | 35.0% | |
| TCTCATTTCGGCTTCTAATT+TGG | - | chr4_4:70796453-70796472 | None:intergenic | 35.0% | |
| ! | CTTTTGCAGAGTCTATTGAT+TGG | + | chr4_4:70796491-70796510 | Msa0699980:intron | 35.0% |
| TCCAATTACATTACGTGTTG+TGG | + | chr4_4:70797116-70797135 | Msa0699980:CDS | 35.0% | |
| GGTGAAAAGATAAGCAATCT+TGG | - | chr4_4:70797191-70797210 | None:intergenic | 35.0% | |
| ! | TGCTTATCTTTTCACCTTGA+AGG | + | chr4_4:70797195-70797214 | Msa0699980:three_prime_UTR | 35.0% |
| ! | ATCTTTTCACCTTGAAGGAT+AGG | + | chr4_4:70797200-70797219 | Msa0699980:three_prime_UTR | 35.0% |
| ! | TCTTTTCACCTTGAAGGATA+GGG | + | chr4_4:70797201-70797220 | Msa0699980:three_prime_UTR | 35.0% |
| AAGTCAATGTCCCATAAGTA+TGG | + | chr4_4:70797414-70797433 | Msa0699980:three_prime_UTR | 35.0% | |
| TCTATTCTCTCGTACTCCAT+TGG | - | chr4_4:70793814-70793833 | None:intergenic | 40.0% | |
| !! | GAATGTTGGTAACAAACCTG+AGG | - | chr4_4:70793841-70793860 | None:intergenic | 40.0% |
| GGGAAAAGGGAGAGAAAAAA+AGG | + | chr4_4:70794297-70794316 | Msa0699980:intron | 40.0% | |
| ! | TTCTGAGGAAAACGGTGATA+TGG | + | chr4_4:70794370-70794389 | Msa0699980:intron | 40.0% |
| TCTGAGGAAAACGGTGATAT+GGG | + | chr4_4:70794371-70794390 | Msa0699980:intron | 40.0% | |
| !! | TGCTTTTTAAACCTGCAGAC+TGG | + | chr4_4:70794536-70794555 | Msa0699980:intron | 40.0% |
| GAGAAATTATTCCAGTCTGC+AGG | - | chr4_4:70794550-70794569 | None:intergenic | 40.0% | |
| TGTCATCGTTAGAGGAAAGT+AGG | - | chr4_4:70794682-70794701 | None:intergenic | 40.0% | |
| ATCAAGGTTGTCATCGTTAG+AGG | - | chr4_4:70794690-70794709 | None:intergenic | 40.0% | |
| TCTAAGCTTGGAGATGTAAC+TGG | - | chr4_4:70794989-70795008 | None:intergenic | 40.0% | |
| ATCAAAGCCATTTAGGGATG+CGG | + | chr4_4:70795018-70795037 | Msa0699980:CDS | 40.0% | |
| GAACTGTTTCCTTTAGTCTC+TGG | - | chr4_4:70795051-70795070 | None:intergenic | 40.0% | |
| ACTAAAGGAAACAGTTCCCA+TGG | + | chr4_4:70795054-70795073 | Msa0699980:CDS | 40.0% | |
| GAAACAGTTCCCATGGAAAA+TGG | + | chr4_4:70795061-70795080 | Msa0699980:CDS | 40.0% | |
| ! | CCTGTGTTACCATTTTCCAT+GGG | - | chr4_4:70795073-70795092 | None:intergenic | 40.0% |
| ! | TCCTGTGTTACCATTTTCCA+TGG | - | chr4_4:70795074-70795093 | None:intergenic | 40.0% |
| AAGTTCGAGCACAATTCATC+CGG | + | chr4_4:70795132-70795151 | Msa0699980:CDS | 40.0% | |
| !! | TCCAGTTTCGAGTTTGACAA+AGG | + | chr4_4:70795205-70795224 | Msa0699980:CDS | 40.0% |
| !! | CCAGTTTCGAGTTTGACAAA+GGG | + | chr4_4:70795206-70795225 | Msa0699980:CDS | 40.0% |
| !! | CAGTTTCGAGTTTGACAAAG+GGG | + | chr4_4:70795207-70795226 | Msa0699980:CDS | 40.0% |
| CTACTTACATGATTGCTCAC+CGG | - | chr4_4:70795238-70795257 | None:intergenic | 40.0% | |
| AGAAGGAATAGGTCTCAACA+GGG | - | chr4_4:70795263-70795282 | None:intergenic | 40.0% | |
| TAGAAGGAATAGGTCTCAAC+AGG | - | chr4_4:70795264-70795283 | None:intergenic | 40.0% | |
| TGAGACCTATTCCTTCTAAG+TGG | + | chr4_4:70795266-70795285 | Msa0699980:CDS | 40.0% | |
| TCGTTCCACTTAGAAGGAAT+AGG | - | chr4_4:70795274-70795293 | None:intergenic | 40.0% | |
| AAATCGCTTGCCAACAAGTA+TGG | + | chr4_4:70795360-70795379 | Msa0699980:CDS | 40.0% | |
| TGATCAAAATTACCGGACTC+TGG | - | chr4_4:70795397-70795416 | None:intergenic | 40.0% | |
| GCCATATGTGAATGTGATGT+TGG | - | chr4_4:70795472-70795491 | None:intergenic | 40.0% | |
| TGTTCCATCTGATGCTCATT+CGG | + | chr4_4:70795510-70795529 | Msa0699980:CDS | 40.0% | |
| TCTAATGATGCAGCATTTCC+CGG | + | chr4_4:70795858-70795877 | Msa0699980:intron | 40.0% | |
| ATGGCAACAGATCTTATACC+GGG | - | chr4_4:70795879-70795898 | None:intergenic | 40.0% | |
| CATGGCAACAGATCTTATAC+CGG | - | chr4_4:70795880-70795899 | None:intergenic | 40.0% | |
| ATCTGTTGCCATGAGAGATA+TGG | + | chr4_4:70795887-70795906 | Msa0699980:CDS | 40.0% | |
| TCTGTTGCCATGAGAGATAT+GGG | + | chr4_4:70795888-70795907 | Msa0699980:CDS | 40.0% | |
| GAAAATGAATATTGCGGCGT+GGG | + | chr4_4:70796166-70796185 | Msa0699980:CDS | 40.0% | |
| GTTCTTTAGTATCTGTGTCG+CGG | - | chr4_4:70796229-70796248 | None:intergenic | 40.0% | |
| !! | TTGAAAAACGTGCTGCTTTG+TGG | + | chr4_4:70796264-70796283 | Msa0699980:CDS | 40.0% |
| !! | TGAAAAACGTGCTGCTTTGT+GGG | + | chr4_4:70796265-70796284 | Msa0699980:CDS | 40.0% |
| TACCTCGGTTCTTCTCATTT+CGG | - | chr4_4:70796465-70796484 | None:intergenic | 40.0% | |
| ! | CTGCAAAAGTATGACTACCT+CGG | - | chr4_4:70796480-70796499 | None:intergenic | 40.0% |
| ! | GCACGAGTTGAAATTAGCTT+AGG | - | chr4_4:70796726-70796745 | None:intergenic | 40.0% |
| TGCTCTCATTTGCTCAACTT+TGG | - | chr4_4:70796946-70796965 | None:intergenic | 40.0% | |
| AGCACAGACACATGCAAAAA+TGG | + | chr4_4:70796962-70796981 | Msa0699980:CDS | 40.0% | |
| TGAAAAAGATTGCTATGGCG+AGG | + | chr4_4:70796985-70797004 | Msa0699980:CDS | 40.0% | |
| CAGAATACATACGCCAAACA+GGG | + | chr4_4:70797081-70797100 | Msa0699980:CDS | 40.0% | |
| !! | AATAGGGCATTTTCCCTGTT+TGG | - | chr4_4:70797097-70797116 | None:intergenic | 40.0% |
| GCCACAACACGTAATGTAAT+TGG | - | chr4_4:70797120-70797139 | None:intergenic | 40.0% | |
| ATTACATTACGTGTTGTGGC+TGG | + | chr4_4:70797120-70797139 | Msa0699980:CDS | 40.0% | |
| TCCCATAAGTATGGTGTAAG+AGG | + | chr4_4:70797423-70797442 | Msa0699980:three_prime_UTR | 40.0% | |
| GCCTCTTACACCATACTTAT+GGG | - | chr4_4:70797427-70797446 | None:intergenic | 40.0% | |
| AGCCTCTTACACCATACTTA+TGG | - | chr4_4:70797428-70797447 | None:intergenic | 40.0% | |
| GAGAGAGTTGGAGAAAGAAG+AGG | - | chr4_4:70793596-70793615 | None:intergenic | 45.0% | |
| GAAAGAGAGAGAGAGAGAGT+TGG | - | chr4_4:70793608-70793627 | None:intergenic | 45.0% | |
| CGAGAGAATAGAGAAACCTC+AGG | + | chr4_4:70793822-70793841 | Msa0699980:CDS | 45.0% | |
| CAGCCCAGAAGATGAAATCA+AGG | - | chr4_4:70793869-70793888 | None:intergenic | 45.0% | |
| ATTGTTTGATGCGCGGGAAA+AGG | + | chr4_4:70794283-70794302 | Msa0699980:intron | 45.0% | |
| TTGTTTGATGCGCGGGAAAA+GGG | + | chr4_4:70794284-70794303 | Msa0699980:intron | 45.0% | |
| TTTGGGGGTGAGTAAGAAAG+TGG | + | chr4_4:70794401-70794420 | Msa0699980:intron | 45.0% | |
| GGATGAAGTTATTAGGGCCT+AGG | + | chr4_4:70794582-70794601 | Msa0699980:CDS | 45.0% | |
| GTTATTAGGGCCTAGGAAGA+AGG | + | chr4_4:70794589-70794608 | Msa0699980:CDS | 45.0% | |
| TTGGATCCATCCTTCTTCCT+AGG | - | chr4_4:70794602-70794621 | None:intergenic | 45.0% | |
| !! | CTTCTAGAACATCCCCTTCA+AGG | + | chr4_4:70794630-70794649 | Msa0699980:intron | 45.0% |
| ACACAAACACAGCACAACCT+GGG | - | chr4_4:70794916-70794935 | None:intergenic | 45.0% | |
| CTGTGTTTGTGTGTGATCGT+AGG | + | chr4_4:70794924-70794943 | Msa0699980:intron | 45.0% | |
| AGCTTGGAGATGTAACTGGA+AGG | - | chr4_4:70794985-70795004 | None:intergenic | 45.0% | |
| CCCATGGAAAATGGTAACAC+AGG | + | chr4_4:70795070-70795089 | Msa0699980:CDS | 45.0% | |
| TCATCTTCTGTTGTCCTCAC+CGG | - | chr4_4:70795154-70795173 | None:intergenic | 45.0% | |
| CCCTTTGTCAAACTCGAAAC+TGG | - | chr4_4:70795209-70795228 | None:intergenic | 45.0% | |
| ! | TTGTTGGCAAGCGATTTGCT+TGG | - | chr4_4:70795357-70795376 | None:intergenic | 45.0% |
| CTTGCCAACAAGTATGGCAA+GGG | + | chr4_4:70795366-70795385 | Msa0699980:CDS | 45.0% | |
| ACAACCCTTGCCATACTTGT+TGG | - | chr4_4:70795373-70795392 | None:intergenic | 45.0% | |
| TTTCTGCAACCTTGCTTGTC+GGG | - | chr4_4:70795426-70795445 | None:intergenic | 45.0% | |
| GTTTCTGCAACCTTGCTTGT+CGG | - | chr4_4:70795427-70795446 | None:intergenic | 45.0% | |
| GAAACCGAATGAGCATCAGA+TGG | - | chr4_4:70795517-70795536 | None:intergenic | 45.0% | |
| TCTGATGCTCATTCGGTTTC+TGG | + | chr4_4:70795517-70795536 | Msa0699980:CDS | 45.0% | |
| ACATGGAAAACCACCTGTAG+TGG | + | chr4_4:70795546-70795565 | Msa0699980:CDS | 45.0% | |
| GGAAAAGATTCCACTACAGG+TGG | - | chr4_4:70795559-70795578 | None:intergenic | 45.0% | |
| TGGGGAAAAGATTCCACTAC+AGG | - | chr4_4:70795562-70795581 | None:intergenic | 45.0% | |
| CTCAGTTCCCATATCTCTCA+TGG | - | chr4_4:70795898-70795917 | None:intergenic | 45.0% | |
| !! | AAGGTTCTTGACTTGGCAAC+GGG | - | chr4_4:70795926-70795945 | None:intergenic | 45.0% |
| !! | GAAGGTTCTTGACTTGGCAA+CGG | - | chr4_4:70795927-70795946 | None:intergenic | 45.0% |
| GATGAAATTGGGCTGCGAAT+TGG | - | chr4_4:70795981-70796000 | None:intergenic | 45.0% | |
| CATCAATGCCTTCAACTCCT+AGG | + | chr4_4:70795997-70796016 | Msa0699980:CDS | 45.0% | |
| TCGAAACTGTGGATCCTCAT+CGG | - | chr4_4:70796060-70796079 | None:intergenic | 45.0% | |
| TTTCCCAAGCTGCATACCAA+GGG | - | chr4_4:70796150-70796169 | None:intergenic | 45.0% | |
| ! | TTTTCCCAAGCTGCATACCA+AGG | - | chr4_4:70796151-70796170 | None:intergenic | 45.0% |
| GGAAAATGAATATTGCGGCG+TGG | + | chr4_4:70796165-70796184 | Msa0699980:CDS | 45.0% | |
| GCAGAATACATACGCCAAAC+AGG | + | chr4_4:70797080-70797099 | Msa0699980:CDS | 45.0% | |
| AGTATGGTGTAAGAGGCTGT+AGG | + | chr4_4:70797430-70797449 | Msa0699980:three_prime_UTR | 45.0% | |
| GTATGGTGTAAGAGGCTGTA+GGG | + | chr4_4:70797431-70797450 | Msa0699980:three_prime_UTR | 45.0% | |
| TTAGGGCCTAGGAAGAAGGA+TGG | + | chr4_4:70794593-70794612 | Msa0699980:CDS | 50.0% | |
| AACATCCCCTTCAAGGCTTG+AGG | + | chr4_4:70794637-70794656 | Msa0699980:intron | 50.0% | |
| AGGATCCTCAAGCCTTGAAG+GGG | - | chr4_4:70794645-70794664 | None:intergenic | 50.0% | |
| CAGGATCCTCAAGCCTTGAA+GGG | - | chr4_4:70794646-70794665 | None:intergenic | 50.0% | |
| TCAGGATCCTCAAGCCTTGA+AGG | - | chr4_4:70794647-70794666 | None:intergenic | 50.0% | |
| CACACAAACACAGCACAACC+TGG | - | chr4_4:70794917-70794936 | None:intergenic | 50.0% | |
| TCCAGTACCGCATCCCTAAA+TGG | - | chr4_4:70795028-70795047 | None:intergenic | 50.0% | |
| ! | GGTACTGGACCAGAGACTAA+AGG | + | chr4_4:70795039-70795058 | Msa0699980:CDS | 50.0% |
| GTTTGACAAAGGGGAGAGAC+CGG | + | chr4_4:70795216-70795235 | Msa0699980:CDS | 50.0% | |
| TCGGCATCGTTCCACTTAGA+AGG | - | chr4_4:70795280-70795299 | None:intergenic | 50.0% | |
| AGTGGAACGATGCCGAGAAA+TGG | + | chr4_4:70795284-70795303 | Msa0699980:CDS | 50.0% | |
| GCTTGCCAACAAGTATGGCA+AGG | + | chr4_4:70795365-70795384 | Msa0699980:CDS | 50.0% | |
| TCATAAGCTCCCGACAAGCA+AGG | + | chr4_4:70795414-70795433 | Msa0699980:CDS | 50.0% | |
| !! | TCGGTTTCTGGTCAAGCACA+TGG | + | chr4_4:70795529-70795548 | Msa0699980:CDS | 50.0% |
| ! | TGCTGCAGCAAGAAGTGCAA+AGG | - | chr4_4:70795775-70795794 | None:intergenic | 50.0% |
| !! | AGGTTCTTGACTTGGCAACG+GGG | - | chr4_4:70795925-70795944 | None:intergenic | 50.0% |
| GTCTGCGAAGGTTCTTGACT+TGG | - | chr4_4:70795933-70795952 | None:intergenic | 50.0% | |
| ! | GACAACCACTCCTGTTGGTT+CGG | + | chr4_4:70795950-70795969 | Msa0699980:CDS | 50.0% |
| ATTGGAGTTGCCGAACCAAC+AGG | - | chr4_4:70795963-70795982 | None:intergenic | 50.0% | |
| ATGCCTTCAACTCCTAGGAG+AGG | + | chr4_4:70796002-70796021 | Msa0699980:CDS | 50.0% | |
| ! | TCATCGGTTGTGTAGCCCAA+AGG | - | chr4_4:70796044-70796063 | None:intergenic | 50.0% |
| TTTGGGCTACACAACCGATG+AGG | + | chr4_4:70796043-70796062 | Msa0699980:CDS | 50.0% | |
| !! | AAAACGTGCTGCTTTGTGGG+AGG | + | chr4_4:70796268-70796287 | Msa0699980:CDS | 50.0% |
| AGCATGGGAAAGTCAGCAGA+AGG | + | chr4_4:70796427-70796446 | Msa0699980:CDS | 50.0% | |
| AGCCGAAATGAGAAGAACCG+AGG | + | chr4_4:70796460-70796479 | Msa0699980:CDS | 50.0% | |
| TTCGACGACCCTATCCTTCA+AGG | - | chr4_4:70797212-70797231 | None:intergenic | 50.0% | |
| CATGTAAGCAACTTGCGCTC+AGG | - | chr4_4:70797280-70797299 | None:intergenic | 50.0% | |
| GCCATTTAGGGATGCGGTAC+TGG | + | chr4_4:70795024-70795043 | Msa0699980:CDS | 55.0% | |
| CGAGCACAATTCATCCGGTG+AGG | + | chr4_4:70795137-70795156 | Msa0699980:CDS | 55.0% | |
| GCAAGGGTTGTTCCAGAGTC+CGG | + | chr4_4:70795382-70795401 | Msa0699980:CDS | 55.0% | |
| ACAGGAGTGGTTGTCTGCGA+AGG | - | chr4_4:70795945-70795964 | None:intergenic | 55.0% | |
| TCGCAGACAACCACTCCTGT+TGG | + | chr4_4:70795945-70795964 | Msa0699980:CDS | 55.0% | |
| AGTTGCCGAACCAACAGGAG+TGG | - | chr4_4:70795958-70795977 | None:intergenic | 55.0% | |
| GCACCTCTCCTAGGAGTTGA+AGG | - | chr4_4:70796008-70796027 | None:intergenic | 55.0% | |
| ! | GTTGTGTAGCCCAAAGGCGT+AGG | - | chr4_4:70796038-70796057 | None:intergenic | 55.0% |
| AGGAGAGAGATTGCAGCCCT+TGG | + | chr4_4:70796131-70796150 | Msa0699980:CDS | 55.0% | |
| CAGCCCTTGGTATGCAGCTT+GGG | + | chr4_4:70796144-70796163 | Msa0699980:CDS | 55.0% | |
| TGCACCAGCTCCTACGCCTT+TGG | + | chr4_4:70796025-70796044 | Msa0699980:CDS | 60.0% | |
| GCACCAGCTCCTACGCCTTT+GGG | + | chr4_4:70796026-70796045 | Msa0699980:CDS | 60.0% | |
| ! | TAGCCCAAAGGCGTAGGAGC+TGG | - | chr4_4:70796032-70796051 | None:intergenic | 60.0% |
| GCAGCCCTTGGTATGCAGCT+TGG | + | chr4_4:70796143-70796162 | Msa0699980:CDS | 60.0% | |
| GGAGCTGGTGCACCTCTCCT+AGG | - | chr4_4:70796017-70796036 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 70793547 | 70797476 | 70793547 | ID=Msa0699980;Name=Msa0699980 |
| chr4_4 | mRNA | 70793547 | 70797476 | 70793547 | ID=Msa0699980-mRNA-1;Parent=Msa0699980;Name=Msa0699980-mRNA-1;_AED=0.06;_eAED=0.06;_QI=267|0.8|0.83|1|1|1|6|328|498 |
| chr4_4 | exon | 70793547 | 70793843 | 70793547 | ID=Msa0699980-mRNA-1:exon:21468;Parent=Msa0699980-mRNA-1 |
| chr4_4 | exon | 70794554 | 70794623 | 70794554 | ID=Msa0699980-mRNA-1:exon:21469;Parent=Msa0699980-mRNA-1 |
| chr4_4 | exon | 70794990 | 70795649 | 70794990 | ID=Msa0699980-mRNA-1:exon:21470;Parent=Msa0699980-mRNA-1 |
| chr4_4 | exon | 70795871 | 70796318 | 70795871 | ID=Msa0699980-mRNA-1:exon:21471;Parent=Msa0699980-mRNA-1 |
| chr4_4 | exon | 70796400 | 70796481 | 70796400 | ID=Msa0699980-mRNA-1:exon:21472;Parent=Msa0699980-mRNA-1 |
| chr4_4 | exon | 70796942 | 70797476 | 70796942 | ID=Msa0699980-mRNA-1:exon:21473;Parent=Msa0699980-mRNA-1 |
| chr4_4 | five_prime_UTR | 70793547 | 70793813 | 70793547 | ID=Msa0699980-mRNA-1:five_prime_utr;Parent=Msa0699980-mRNA-1 |
| chr4_4 | CDS | 70793814 | 70793843 | 70793814 | ID=Msa0699980-mRNA-1:cds;Parent=Msa0699980-mRNA-1 |
| chr4_4 | CDS | 70794554 | 70794623 | 70794554 | ID=Msa0699980-mRNA-1:cds;Parent=Msa0699980-mRNA-1 |
| chr4_4 | CDS | 70794990 | 70795649 | 70794990 | ID=Msa0699980-mRNA-1:cds;Parent=Msa0699980-mRNA-1 |
| chr4_4 | CDS | 70795871 | 70796318 | 70795871 | ID=Msa0699980-mRNA-1:cds;Parent=Msa0699980-mRNA-1 |
| chr4_4 | CDS | 70796400 | 70796481 | 70796400 | ID=Msa0699980-mRNA-1:cds;Parent=Msa0699980-mRNA-1 |
| chr4_4 | CDS | 70796942 | 70797148 | 70796942 | ID=Msa0699980-mRNA-1:cds;Parent=Msa0699980-mRNA-1 |
| chr4_4 | three_prime_UTR | 70797149 | 70797476 | 70797149 | ID=Msa0699980-mRNA-1:three_prime_utr;Parent=Msa0699980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
