AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0655920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655920 MtrunA17_Chr8g0376011 96.255 801 24 2 1 795 1 801 0.0 1593
Msa0655920 MtrunA17_Chr4g0019561 36.506 704 364 16 143 791 519 1194 2.40e-121 394
Msa0655920 MtrunA17_Chr5g0447621 37.639 449 264 7 328 765 79 522 5.03e-91 297
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655920 AT1G14740.1 51.523 821 284 26 1 795 1 733 0.0 702
Msa0655920 AT3G63500.1 35.982 667 352 19 171 792 247 883 3.60e-110 357
Msa0655920 AT3G63500.2 35.982 667 352 19 171 792 522 1158 5.08e-108 357
Msa0655920 AT3G63500.3 35.982 667 352 19 171 792 522 1158 5.08e-108 357
Msa0655920 AT5G48160.2 39.101 445 247 8 337 767 93 527 1.52e-89 293
Msa0655920 AT5G48160.1 39.101 445 247 8 337 767 93 527 1.52e-89 293
Msa0655920 AT3G07780.3 38.530 449 248 9 328 760 82 518 4.17e-86 284
Msa0655920 AT3G07780.1 38.530 449 248 9 328 760 82 518 4.17e-86 284
Msa0655920 AT3G07780.2 38.530 449 248 9 328 760 93 529 1.01e-85 283

Find 199 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGGTCCAACCAGGTTTC+TGG 0.125739 4_3:-64885362 Msa0655920:CDS
GGATTGTTAGGGAAATTATT+TGG 0.126528 4_3:-64884512 Msa0655920:CDS
ACGTTTGTTTGGATCAAAAT+TGG 0.188283 4_3:+64885439 None:intergenic
CGGGTTTGATGAGCTTCTTC+TGG 0.192598 4_3:+64884022 None:intergenic
TGTATTGAAGAACTAGATTT+TGG 0.193389 4_3:+64882397 None:intergenic
GAAATTCTGCTTTGGTATTC+TGG 0.199428 4_3:-64881838 Msa0655920:three_prime_UTR
AATTTATAGATTCAAGATTT+TGG 0.200472 4_3:-64881784 Msa0655920:three_prime_UTR
CCTTGAATCTCTTTCAATCT+TGG 0.204571 4_3:+64885290 None:intergenic
GGAAAACATGGCAAACTTTC+CGG 0.213766 4_3:-64882488 Msa0655920:CDS
CTGAAAGAGAGAGTAATATT+AGG 0.226791 4_3:-64885136 Msa0655920:CDS
CAAATCAAGATGGAGGAAAA+TGG 0.235949 4_3:-64885217 Msa0655920:CDS
CATAGGTTTGAGACTCATTC+AGG 0.239156 4_3:-64884621 Msa0655920:CDS
CGAGTAAAGACGATCAAATT+TGG 0.254395 4_3:-64884833 Msa0655920:CDS
CTTGAATCTCTTTCAATCTT+GGG 0.262464 4_3:+64885291 None:intergenic
CAAAGGTGGAATTGAAAGTT+TGG 0.262902 4_3:-64882245 Msa0655920:CDS
GTTGACTAATTCGTCTTTCT+TGG 0.266243 4_3:+64884398 None:intergenic
GGTAGCCTTGATGTCTTCTT+TGG 0.277127 4_3:+64882321 None:intergenic
TTCTCTCAAGCCTGCTTTGA+AGG 0.277570 4_3:+64884376 None:intergenic
TCTTTGTCCTGATCATCTTC+TGG 0.278880 4_3:+64882140 None:intergenic
GGGTCTTGATAACTTACTTC+TGG 0.293426 4_3:+64885460 None:intergenic
GTTTAGCTGGTGGTGGAAAT+AGG 0.304049 4_3:-64884554 Msa0655920:CDS
CAAAACCAGAGAGGATTGTT+AGG 0.305807 4_3:-64884524 Msa0655920:CDS
TTGCTTCATCTGCCTTGGTT+TGG 0.325105 4_3:+64882182 None:intergenic
AACAGGAAGCAAACTCTTGC+AGG 0.328838 4_3:+64884197 None:intergenic
GGAAACGCAGAGGAGGAAAT+TGG 0.331271 4_3:-64882056 Msa0655920:CDS
AAATTGAAAATCATCCATTC+TGG 0.334409 4_3:+64881809 None:intergenic
GATTGTTAGGGAAATTATTT+GGG 0.334809 4_3:-64884511 Msa0655920:CDS
GAAATACAGTTTCATTGTAT+TGG 0.337353 4_3:-64883967 Msa0655920:CDS
TCATCTGGGTAACGTTTGTT+TGG 0.346007 4_3:+64885428 None:intergenic
GGAGAGCATTGTTCGGATAA+AGG 0.349420 4_3:-64882224 Msa0655920:CDS
TCTCACTTGGCCATGATTGC+TGG 0.349920 4_3:-64885527 Msa0655920:exon
AAAGGGTACTAAAGTTCAAT+TGG 0.350020 4_3:-64884325 Msa0655920:CDS
TCAAAAGGGTAAAGAGGTTA+TGG 0.350376 4_3:-64885252 Msa0655920:CDS
TGATGGTTTGTTGGCGAGAA+TGG 0.357589 4_3:-64881963 Msa0655920:CDS
GCCTTGATGTCTTCTTTGGA+TGG 0.364546 4_3:+64882325 None:intergenic
CCTCCTTGCTTCATCTGCCT+TGG 0.368229 4_3:+64882177 None:intergenic
CAGACACTGGATCTTTCTCT+TGG 0.372476 4_3:-64885095 Msa0655920:CDS
CATGTCTTGTGCAAAGGATT+GGG 0.372506 4_3:-64883899 Msa0655920:CDS
CTAACACCAGTTCCATTTCC+AGG 0.389427 4_3:+64884732 None:intergenic
GAAGAAATTCTGAGAGTTTG+AGG 0.392536 4_3:-64884587 Msa0655920:CDS
AGATCCAGTGTCTGAACCTT+TGG 0.396783 4_3:+64885104 None:intergenic
CAATCAAAGTTCAAACAAAT+AGG 0.398951 4_3:+64884114 None:intergenic
TGAAAGAGAGAGTAATATTA+GGG 0.403143 4_3:-64885135 Msa0655920:CDS
GCTATGATTGTGCTTGGTTT+CGG 0.404943 4_3:+64885646 None:intergenic
CATTGGTGCCATGCTGTTTG+TGG 0.409509 4_3:-64884048 Msa0655920:CDS
CGTTTGTTTGGATCAAAATT+GGG 0.410561 4_3:+64885440 None:intergenic
AATTTATTGAAATTCTGCTT+TGG 0.413651 4_3:-64881846 Msa0655920:three_prime_UTR
TCATGTCTTGTGCAAAGGAT+TGG 0.416223 4_3:-64883900 Msa0655920:CDS
CAGCGTGTCCTTTGGAAGGC+TGG 0.422697 4_3:+64882426 None:intergenic
AAAATGCAAGATGAAATTGA+TGG 0.424314 4_3:-64881980 Msa0655920:CDS
AAATTGCATGATCTGATTGC+AGG 0.425913 4_3:+64883735 None:intergenic
AGGTCCTTTCAAGCTCGGTC+CGG 0.426963 4_3:+64884002 None:intergenic
CATAGCAGGTTTAAGCCAAT+TGG 0.429977 4_3:-64884780 Msa0655920:CDS
CCTTGATGTCTTCTTTGGAT+GGG 0.432069 4_3:+64882326 None:intergenic
GTCTTCTTTGGATGGGGCAC+CGG 0.435369 4_3:+64882333 None:intergenic
TGGTGATGGTATTGTTGCTT+TGG 0.436883 4_3:-64884760 Msa0655920:CDS
GGAAGAGACAGCGTGTCCTT+TGG 0.438392 4_3:+64882418 None:intergenic
TCCGACATGGGTGGTATTGG+TGG 0.438973 4_3:-64885380 Msa0655920:CDS
TGAAAGCTTTCTGAGTCAAA+AGG 0.442484 4_3:-64885267 Msa0655920:CDS
GTGCAAGTAATACTTGTAGT+TGG 0.443206 4_3:-64884092 Msa0655920:CDS
GAACATGCATCGGAAATGTT+TGG 0.443604 4_3:-64883940 Msa0655920:CDS
GTTCATCTCCCTCTCTCACT+TGG 0.445704 4_3:-64885540 Msa0655920:five_prime_UTR
GCTTTGGCAAATCCTGGAAA+TGG 0.447587 4_3:-64884744 Msa0655920:CDS
TTTGAAGGTTTAGCTGGTGG+TGG 0.448117 4_3:-64884561 Msa0655920:CDS
CCGAGCTTGAAAGGACCTTC+TGG 0.449486 4_3:-64883997 Msa0655920:CDS
AAATCAAGATGGAGGAAAAT+GGG 0.449888 4_3:-64885216 Msa0655920:CDS
TATTCTACTAGGCCACATTC+CGG 0.450993 4_3:-64882352 Msa0655920:CDS
ACCCTTTGAAAGTGTCTCCT+TGG 0.451962 4_3:+64884341 None:intergenic
CTTGATGTCTTCTTTGGATG+GGG 0.454272 4_3:+64882327 None:intergenic
GATTCCGACATGGGTGGTAT+TGG 0.455133 4_3:-64885383 Msa0655920:CDS
AACTGTGGTGAAGGTACTAA+TGG 0.457321 4_3:-64884810 Msa0655920:CDS
AGACTCATTCAGGGGATTCA+AGG 0.459390 4_3:-64884611 Msa0655920:CDS
ATTTCCCTAACAATCCTCTC+TGG 0.459574 4_3:+64884519 None:intergenic
TGGAGGCAACAAAGCAGCAT+TGG 0.463387 4_3:-64881943 Msa0655920:CDS
CTTTGGAAGGCTGGCTTGAG+AGG 0.464312 4_3:+64882435 None:intergenic
GGAGGCAACAAAGCAGCATT+GGG 0.465244 4_3:-64881942 Msa0655920:CDS
CAGGTTTCTGGTGGTAACTC+AGG 0.465258 4_3:-64885350 Msa0655920:CDS
CTGAATTGCCTGCTAGACAT+AGG 0.465919 4_3:-64884638 Msa0655920:CDS
TTTCCTCCTCTGCGTTTCCT+CGG 0.466448 4_3:+64882060 None:intergenic
ATTGTTGCTTTGGCAAATCC+TGG 0.468736 4_3:-64884750 Msa0655920:CDS
AAAACCAGAGAGGATTGTTA+GGG 0.469024 4_3:-64884523 Msa0655920:CDS
GAACGAAGAGAGAGAAACTA+AGG 0.469538 4_3:+64885559 None:intergenic
AAGGGTTCCAGAAGATGATC+AGG 0.477139 4_3:-64882147 Msa0655920:CDS
AGATGAAATTGATGGTTTGT+TGG 0.477510 4_3:-64881972 Msa0655920:CDS
CCAAGATTGAAAGAGATTCA+AGG 0.478614 4_3:-64885290 Msa0655920:CDS
CTAATGGCTCTGTGCATAGC+AGG 0.484571 4_3:-64884794 Msa0655920:CDS
GGTCCTTTCAAGCTCGGTCC+GGG 0.484591 4_3:+64884003 None:intergenic
TGATGACGATCTTCAATTAG+CGG 0.485492 4_3:-64882278 Msa0655920:CDS
TTACAGTCACAATCATCAAC+AGG 0.485873 4_3:+64884180 None:intergenic
TGGTATTGGTGGGTCCAACC+AGG 0.485971 4_3:-64885369 Msa0655920:CDS
AAGATCTTTACCAGCAATCA+TGG 0.490097 4_3:+64885517 None:intergenic
TTCTTTAACTCGTAATTCAA+CGG 0.493120 4_3:-64884874 Msa0655920:CDS
AAACCCGGACCGAGCTTGAA+AGG 0.495513 4_3:-64884006 Msa0655920:CDS
AGTAATACTTGTAGTTGGAT+TGG 0.496287 4_3:-64884087 Msa0655920:CDS
TCTGAGTCAAAAGGGTAAAG+AGG 0.498142 4_3:-64885258 Msa0655920:CDS
AAAGTTTGGAGAGCATTGTT+CGG 0.498175 4_3:-64882231 Msa0655920:CDS
AAGAAATTCTGAGAGTTTGA+GGG 0.499273 4_3:-64884586 Msa0655920:CDS
GCAAATCCTGGAAATGGAAC+TGG 0.502590 4_3:-64884738 Msa0655920:CDS
GCAACAATACCATCACCAAT+TGG 0.506827 4_3:+64884765 None:intergenic
TATTCTGGTTGTTTCCAGAA+TGG 0.508722 4_3:-64881823 Msa0655920:three_prime_UTR
TTATAATGACTACTATTACC+TGG 0.509349 4_3:+64884696 None:intergenic
GTCTCAAACCTATGTCTAGC+AGG 0.510746 4_3:+64884630 None:intergenic
TATGAAGTATGAGTAGTTGA+AGG 0.513074 4_3:+64884981 None:intergenic
ATGAGTCGAGCTATTCTACT+AGG 0.513430 4_3:-64882363 Msa0655920:CDS
AAAGCCATTTGAAAATGAAA+AGG 0.513640 4_3:+64884914 None:intergenic
TCAGTTATCTGAGTTGGTAG+AGG 0.514462 4_3:-64884250 Msa0655920:CDS
GTAAGAGAAAGAGAAACATC+AGG 0.514471 4_3:+64885068 None:intergenic
TAATCTTCAGTTATCTGAGT+TGG 0.514763 4_3:-64884256 Msa0655920:CDS
GAAAGCTTTCTGAGTCAAAA+GGG 0.515440 4_3:-64885266 Msa0655920:CDS
AAGATTACCGTACAAGAAGC+TGG 0.518720 4_3:+64884272 None:intergenic
CAGGACAAAGACTGCACAGA+TGG 0.518929 4_3:-64882128 Msa0655920:CDS
GACTCATTCAGGGGATTCAA+GGG 0.521327 4_3:-64884610 Msa0655920:CDS
GGTTTCCACATAGATAACTC+AGG 0.521637 4_3:+64885312 None:intergenic
ATGTCTTGTGCAAAGGATTG+GGG 0.521792 4_3:-64883898 Msa0655920:CDS
ATCTGATTGCAGGCTTCTGA+AGG 0.522424 4_3:+64883745 None:intergenic
TCCAAGGAGACACTTTCAAA+GGG 0.522668 4_3:-64884342 Msa0655920:CDS
CGTTGATGTCACAACTTCCT+CGG 0.522739 4_3:+64884449 None:intergenic
AGATTTGCTCGGGAAACAAA+GGG 0.525514 4_3:-64884158 Msa0655920:CDS
CTGAGTTACCACCAGAAACC+TGG 0.530099 4_3:+64885351 None:intergenic
TTGGATGGGGCACCGGAATG+TGG 0.530269 4_3:+64882340 None:intergenic
TTCCAAGGAGACACTTTCAA+AGG 0.532886 4_3:-64884343 Msa0655920:CDS
TGAGTAGTTGAAGGCCTGCT+AGG 0.537933 4_3:+64884990 None:intergenic
TCTGAGAATTCAAATCAAGA+TGG 0.538512 4_3:-64885227 Msa0655920:CDS
AATTAGTCAACCTTCAAAGC+AGG 0.538657 4_3:-64884386 Msa0655920:CDS
GAAGCAAGGAGGGCGGCAGA+AGG 0.540304 4_3:-64882166 Msa0655920:CDS
CCAGAAGGTCCTTTCAAGCT+CGG 0.542946 4_3:+64883997 None:intergenic
AGGTTTAAGCCAATTGGTGA+TGG 0.542946 4_3:-64884774 Msa0655920:CDS
TTTGAAGAGAAAACAGAAGC+CGG 0.545580 4_3:+64882469 None:intergenic
CTGTTAGAGTAAAACCTAGC+AGG 0.549424 4_3:-64885004 Msa0655920:CDS
GAGCTGCATTTGAAAACTGA+TGG 0.552123 4_3:-64883802 Msa0655920:CDS
CAAATTTGGAACTGTGGTGA+AGG 0.554406 4_3:-64884819 Msa0655920:CDS
CAATCATGGCCAAGTGAGAG+AGG 0.556764 4_3:+64885531 None:intergenic
CAGAAGAAGCTCATCAAACC+CGG 0.558334 4_3:-64884021 Msa0655920:CDS
GGCAGATGAAGCAAGGAGGG+CGG 0.561217 4_3:-64882173 Msa0655920:CDS
AAGATTTGCTCGGGAAACAA+AGG 0.561700 4_3:-64884159 Msa0655920:CDS
TTTCTGAGAGATTCCGACAT+GGG 0.564131 4_3:-64885392 Msa0655920:CDS
TTACGAGTTAAAGAACAACT+TGG 0.566899 4_3:+64884882 None:intergenic
TGTGACTGTAAGATTTGCTC+GGG 0.566967 4_3:-64884168 Msa0655920:CDS
ATGAATAGATGCGGAAAACA+TGG 0.567045 4_3:-64882500 Msa0655920:intron
CAAGGCAGATGAAGCAAGGA+GGG 0.567736 4_3:-64882176 Msa0655920:CDS
TTCAAAGCAGGCTTGAGAGA+AGG 0.571954 4_3:-64884374 Msa0655920:CDS
GTTAGTTCATTTATGCAACC+AGG 0.577258 4_3:-64884714 Msa0655920:CDS
GCTGGTAAAGATCTTCGTAA+TGG 0.577310 4_3:-64885509 Msa0655920:CDS
GACGATCAAATTTGGAACTG+TGG 0.579357 4_3:-64884825 Msa0655920:CDS
TGGGAAGTGAGGATCGCAAA+GGG 0.580002 4_3:-64883828 Msa0655920:CDS
CCCATCCAAAGAAGACATCA+AGG 0.582862 4_3:-64882326 Msa0655920:CDS
GAGACCAAAGGTTCAGACAC+TGG 0.583046 4_3:-64885108 Msa0655920:CDS
GAAAGGACCTTCTGGTACCA+CGG 0.584387 4_3:-64883989 Msa0655920:CDS
GAAATTGGATGAAATGAAAG+TGG 0.585716 4_3:-64882041 Msa0655920:CDS
GGGTCCAACCAGGTTTCTGG+TGG 0.586519 4_3:-64885359 Msa0655920:CDS
GAGACAGCGTGTCCTTTGGA+AGG 0.588812 4_3:+64882422 None:intergenic
GGACTGTCCAGCTTCTTGTA+CGG 0.589156 4_3:-64884279 Msa0655920:CDS
CTCTCAAGCCAGCCTTCCAA+AGG 0.589453 4_3:-64882434 Msa0655920:CDS
ATAGGTTTGAGACTCATTCA+GGG 0.591379 4_3:-64884620 Msa0655920:CDS
AAGCAAGGAGGGCGGCAGAA+GGG 0.593219 4_3:-64882165 Msa0655920:CDS
CCGACATGGGTGGTATTGGT+GGG 0.593598 4_3:-64885379 Msa0655920:CDS
TTGTGACTGTAAGATTTGCT+CGG 0.596225 4_3:-64884169 Msa0655920:CDS
GAGAAGGTCTGATCTTTCCA+AGG 0.598294 4_3:-64884358 Msa0655920:CDS
GACAATTCAGGAGCTTGCCG+AGG 0.600101 4_3:-64884466 Msa0655920:CDS
TGTCTAGCAGGCAATTCAGA+AGG 0.601429 4_3:+64884642 None:intergenic
ACAATCAAGCTCTTTCAACA+AGG 0.601694 4_3:+64883867 None:intergenic
AGCGAAAATGTTCCAAACCA+AGG 0.602262 4_3:-64882194 Msa0655920:CDS
GATGTGATGTTTGTTCACAT+TGG 0.603032 4_3:-64884065 Msa0655920:CDS
AGAAATTCTGAGAGTTTGAG+GGG 0.603264 4_3:-64884585 Msa0655920:CDS
GAGAATTCAAATCAAGATGG+AGG 0.603346 4_3:-64885224 Msa0655920:CDS
AAACCAAGGCAGATGAAGCA+AGG 0.604039 4_3:-64882180 Msa0655920:CDS
AAGTGAGGATCGCAAAGGGA+AGG 0.605051 4_3:-64883824 Msa0655920:CDS
CTGAGAGATTCCGACATGGG+TGG 0.605479 4_3:-64885389 Msa0655920:CDS
TTAGCGGCTTTACTAAGCAA+AGG 0.606428 4_3:-64882262 Msa0655920:CDS
AATCATGGCCAAGTGAGAGA+GGG 0.606734 4_3:+64885532 None:intergenic
CCCACCAATACCACCCATGT+CGG 0.609710 4_3:+64885379 None:intergenic
TGTGTTCATGTCTTGTGCAA+AGG 0.616913 4_3:-64883905 Msa0655920:CDS
GCGGCTTTACTAAGCAAAGG+TGG 0.624078 4_3:-64882259 Msa0655920:CDS
AATGGTGTTGCTGATTCTGA+TGG 0.626641 4_3:-64885491 Msa0655920:CDS
TGTCTTGTGCAAAGGATTGG+GGG 0.628635 4_3:-64883897 Msa0655920:CDS
TATTGGATGTGAACATGCAT+CGG 0.629214 4_3:-64883950 Msa0655920:CDS
TTAGAATAAGAATGAGACAA+AGG 0.633322 4_3:+64884939 None:intergenic
AAGAGCTTGATTGTGTGAGG+AGG 0.633626 4_3:-64883858 Msa0655920:CDS
ACAATGAAACTGTATTTCCG+TGG 0.634167 4_3:+64883972 None:intergenic
TGTATTTCCGTGGTACCAGA+AGG 0.636444 4_3:+64883982 None:intergenic
GTTTCCACATAGATAACTCA+GGG 0.638114 4_3:+64885313 None:intergenic
TAGGTTTGAGACTCATTCAG+GGG 0.639490 4_3:-64884619 Msa0655920:CDS
TGAAAGAGCTTGATTGTGTG+AGG 0.645254 4_3:-64883861 Msa0655920:CDS
ATTGGATGAAATGAAAGTGG+TGG 0.645371 4_3:-64882038 Msa0655920:CDS
TCTGGATGCCACAAACAGCA+TGG 0.649091 4_3:+64884040 None:intergenic
ATACCGAGGAAACGCAGAGG+AGG 0.654221 4_3:-64882063 Msa0655920:CDS
TATTAGGGATAAGAGACCAA+AGG 0.659782 4_3:-64885120 Msa0655920:CDS
ATGGGAAGTGAGGATCGCAA+AGG 0.660662 4_3:-64883829 Msa0655920:CDS
CCAAGGCAGATGAAGCAAGG+AGG 0.661271 4_3:-64882177 Msa0655920:CDS
TTGACCCTGAGTTATCTATG+TGG 0.661402 4_3:-64885317 Msa0655920:CDS
GTTACCACCAGAAACCTGGT+TGG 0.662098 4_3:+64885355 None:intergenic
TGGTTTGTTGGCGAGAATGG+AGG 0.674598 4_3:-64881960 Msa0655920:CDS
ACTCATTCAGGGGATTCAAG+GGG 0.678667 4_3:-64884609 Msa0655920:CDS
GGAATCTTTCAAAACCAGAG+AGG 0.683101 4_3:-64884533 Msa0655920:CDS
GGAAGTTGTGACATCAACGA+AGG 0.692302 4_3:-64884445 Msa0655920:CDS
ACTCTGTCTGAATGATACCG+AGG 0.693322 4_3:-64882077 Msa0655920:CDS
AATTTGATCGTCTTTACTCG+CGG 0.693340 4_3:+64884836 None:intergenic
GAGCATTGTTCGGATAAAGG+AGG 0.695694 4_3:-64882221 Msa0655920:CDS
ATGATACCGAGGAAACGCAG+AGG 0.740426 4_3:-64882066 Msa0655920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAAAAATATATGAAAAA+AGG + chr4_3:64885443-64885462 None:intergenic 10.0%
!!! GAATTTAAAGTAATTGTTTT+TGG - chr4_3:64884384-64884403 Msa0655920:CDS 15.0%
!!! AATTTATAGATTCAAGATTT+TGG - chr4_3:64885570-64885589 Msa0655920:five_prime_UTR 15.0%
!! TGAATTGTCAATGAAAAAAT+AGG + chr4_3:64882877-64882896 None:intergenic 20.0%
!!! TATTTTTTCATTGACAATTC+AGG - chr4_3:64882876-64882895 Msa0655920:intron 20.0%
!! TGTTAATTGAATTTAGTGTT+TGG - chr4_3:64883920-64883939 Msa0655920:CDS 20.0%
!!! TTTTTTAAGACAAGAAATTC+AGG - chr4_3:64884008-64884027 Msa0655920:CDS 20.0%
!!! TTTTTAAGACAAGAAATTCA+GGG - chr4_3:64884009-64884028 Msa0655920:CDS 20.0%
!! AGCTTCAATATTAAATTTGT+TGG - chr4_3:64884285-64884304 Msa0655920:CDS 20.0%
!! TTGAATATTTATGCCTAATA+TGG - chr4_3:64884451-64884470 Msa0655920:CDS 20.0%
!! TAGATATCAGATATGATTAT+AGG + chr4_3:64884811-64884830 None:intergenic 20.0%
!!! TTTATTTTGTTTTCTTACTC+AGG - chr4_3:64885466-64885485 Msa0655920:CDS 20.0%
!! AATTTATTGAAATTCTGCTT+TGG - chr4_3:64885508-64885527 Msa0655920:CDS 20.0%
! TGAAAGAGAGAGTAATATTA+GGG - chr4_3:64882219-64882238 Msa0655920:CDS 25.0%
! TTAGAATAAGAATGAGACAA+AGG + chr4_3:64882418-64882437 None:intergenic 25.0%
! AAAGCCATTTGAAAATGAAA+AGG + chr4_3:64882443-64882462 None:intergenic 25.0%
! TTCTTTAACTCGTAATTCAA+CGG - chr4_3:64882480-64882499 Msa0655920:CDS 25.0%
! TTATAATGACTACTATTACC+TGG + chr4_3:64882661-64882680 None:intergenic 25.0%
! ATTCAGAAGGAAAAAAAGAA+TGG + chr4_3:64882702-64882721 None:intergenic 25.0%
! GATTGTTAGGGAAATTATTT+GGG - chr4_3:64882843-64882862 Msa0655920:intron 25.0%
! CAATCAAAGTTCAAACAAAT+AGG + chr4_3:64883243-64883262 None:intergenic 25.0%
! GAAATACAGTTTCATTGTAT+TGG - chr4_3:64883387-64883406 Msa0655920:intron 25.0%
!!! ATTTTTATTTCAGCAATGAC+TGG + chr4_3:64883860-64883879 None:intergenic 25.0%
! GAAAAAATCAAACAATGATG+AGG - chr4_3:64883953-64883972 Msa0655920:CDS 25.0%
! TTGTCTTAAAAAAACATTGC+TGG + chr4_3:64884001-64884020 None:intergenic 25.0%
! CAAAAGCAAATCTATTTGAA+TGG - chr4_3:64884160-64884179 Msa0655920:CDS 25.0%
! ATTGTCAATCAAACAAATTG+AGG + chr4_3:64884228-64884247 None:intergenic 25.0%
! TATTTATGCCTAATATGGTA+TGG - chr4_3:64884456-64884475 Msa0655920:CDS 25.0%
! ATTTATGCCTAATATGGTAT+GGG - chr4_3:64884457-64884476 Msa0655920:CDS 25.0%
!! ATTTTTCTGATGAATAGATG+CGG - chr4_3:64884845-64884864 Msa0655920:CDS 25.0%
!! TGTATTGAAGAACTAGATTT+TGG + chr4_3:64884960-64884979 None:intergenic 25.0%
!!! ATTTTTTAGTTCGCTAAAGA+TGG + chr4_3:64885057-64885076 None:intergenic 25.0%
! AAAATGCAAGATGAAATTGA+TGG - chr4_3:64885374-64885393 Msa0655920:CDS 25.0%
! AAATTGAAAATCATCCATTC+TGG + chr4_3:64885548-64885567 None:intergenic 25.0%
! TTTTATGCTATGATTGTGCT+TGG + chr4_3:64881717-64881736 None:intergenic 30.0%
CGTTTGTTTGGATCAAAATT+GGG + chr4_3:64881917-64881936 None:intergenic 30.0%
ACGTTTGTTTGGATCAAAAT+TGG + chr4_3:64881918-64881937 None:intergenic 30.0%
!! AAACAGCATCTTTTTCATCT+GGG + chr4_3:64881943-64881962 None:intergenic 30.0%
!! AAAACAGCATCTTTTTCATC+TGG + chr4_3:64881944-64881963 None:intergenic 30.0%
CTTGAATCTCTTTCAATCTT+GGG + chr4_3:64882066-64882085 None:intergenic 30.0%
TCTGAGAATTCAAATCAAGA+TGG - chr4_3:64882127-64882146 Msa0655920:CDS 30.0%
AAATCAAGATGGAGGAAAAT+GGG - chr4_3:64882138-64882157 Msa0655920:CDS 30.0%
CTGAAAGAGAGAGTAATATT+AGG - chr4_3:64882218-64882237 Msa0655920:CDS 30.0%
! TCAAATGCTTTTCACAACAA+TGG - chr4_3:64882313-64882332 Msa0655920:CDS 30.0%
TATGAAGTATGAGTAGTTGA+AGG + chr4_3:64882376-64882395 None:intergenic 30.0%
! AACGCCTTTTCATTTTCAAA+TGG - chr4_3:64882436-64882455 Msa0655920:CDS 30.0%
TTACGAGTTAAAGAACAACT+TGG + chr4_3:64882475-64882494 None:intergenic 30.0%
! AAGAAATTCTGAGAGTTTGA+GGG - chr4_3:64882768-64882787 Msa0655920:intron 30.0%
GGATTGTTAGGGAAATTATT+TGG - chr4_3:64882842-64882861 Msa0655920:intron 30.0%
!! AAAGGGTACTAAAGTTCAAT+TGG - chr4_3:64883029-64883048 Msa0655920:intron 30.0%
TAATCTTCAGTTATCTGAGT+TGG - chr4_3:64883098-64883117 Msa0655920:intron 30.0%
AGTAATACTTGTAGTTGGAT+TGG - chr4_3:64883267-64883286 Msa0655920:intron 30.0%
AGTTAGTAGGATTGTGAATA+GGG - chr4_3:64883730-64883749 Msa0655920:CDS 30.0%
!! GGACACAAATTTTGATATGA+AGG - chr4_3:64883755-64883774 Msa0655920:CDS 30.0%
!! CACAAATTTTGATATGAAGG+TGG - chr4_3:64883758-64883777 Msa0655920:CDS 30.0%
CAAATAACAGACAATTCAGA+AGG - chr4_3:64883884-64883903 Msa0655920:CDS 30.0%
TTTAGTGTTTGGTTGTTCAA+AGG - chr4_3:64883931-64883950 Msa0655920:CDS 30.0%
AAATCAAACAATGATGAGGA+TGG - chr4_3:64883957-64883976 Msa0655920:CDS 30.0%
AAAACATTGCTGGAAAACTT+TGG + chr4_3:64883991-64884010 None:intergenic 30.0%
!! TGTTGATATTGCTTTTGAAG+TGG - chr4_3:64884049-64884068 Msa0655920:CDS 30.0%
!!! GTTGATATTGCTTTTGAAGT+GGG - chr4_3:64884050-64884069 Msa0655920:CDS 30.0%
AGTGGGATTATAAGCATATT+TGG - chr4_3:64884067-64884086 Msa0655920:CDS 30.0%
! AAAATGTTCACGAGAGATTT+TGG + chr4_3:64884120-64884139 None:intergenic 30.0%
ATATTGAAGCTGAATACTGT+AGG + chr4_3:64884276-64884295 None:intergenic 30.0%
AAATGCAAAATACCATTGCT+AGG + chr4_3:64884515-64884534 None:intergenic 30.0%
! TTGAAATGTGCTTTTCTCTT+TGG - chr4_3:64884625-64884644 Msa0655920:CDS 30.0%
AGTTACATCAACACATTCAA+CGG + chr4_3:64884653-64884672 None:intergenic 30.0%
TCAATAGTTAAAGCTAAAGC+AGG + chr4_3:64884740-64884759 None:intergenic 30.0%
GAAATTGGATGAAATGAAAG+TGG - chr4_3:64885313-64885332 Msa0655920:CDS 30.0%
! AGATGAAATTGATGGTTTGT+TGG - chr4_3:64885382-64885401 Msa0655920:CDS 30.0%
AAGATCTTTACCAGCAATCA+TGG + chr4_3:64881840-64881859 None:intergenic 35.0%
GTTTCCACATAGATAACTCA+GGG + chr4_3:64882044-64882063 None:intergenic 35.0%
CCTTGAATCTCTTTCAATCT+TGG + chr4_3:64882067-64882086 None:intergenic 35.0%
CCAAGATTGAAAGAGATTCA+AGG - chr4_3:64882064-64882083 Msa0655920:CDS 35.0%
TGAAAGCTTTCTGAGTCAAA+AGG - chr4_3:64882087-64882106 Msa0655920:CDS 35.0%
GAAAGCTTTCTGAGTCAAAA+GGG - chr4_3:64882088-64882107 Msa0655920:CDS 35.0%
TCAAAAGGGTAAAGAGGTTA+TGG - chr4_3:64882102-64882121 Msa0655920:CDS 35.0%
GAGAATTCAAATCAAGATGG+AGG - chr4_3:64882130-64882149 Msa0655920:CDS 35.0%
CAAATCAAGATGGAGGAAAA+TGG - chr4_3:64882137-64882156 Msa0655920:CDS 35.0%
TATTAGGGATAAGAGACCAA+AGG - chr4_3:64882234-64882253 Msa0655920:CDS 35.0%
GTAAGAGAAAGAGAAACATC+AGG + chr4_3:64882289-64882308 None:intergenic 35.0%
AATTTGATCGTCTTTACTCG+CGG + chr4_3:64882521-64882540 None:intergenic 35.0%
CGAGTAAAGACGATCAAATT+TGG - chr4_3:64882521-64882540 Msa0655920:intron 35.0%
GTTAGTTCATTTATGCAACC+AGG - chr4_3:64882640-64882659 Msa0655920:intron 35.0%
! ATAGGTTTGAGACTCATTCA+GGG - chr4_3:64882734-64882753 Msa0655920:intron 35.0%
! GAAGAAATTCTGAGAGTTTG+AGG - chr4_3:64882767-64882786 Msa0655920:intron 35.0%
! AGAAATTCTGAGAGTTTGAG+GGG - chr4_3:64882769-64882788 Msa0655920:intron 35.0%
AAAACCAGAGAGGATTGTTA+GGG - chr4_3:64882831-64882850 Msa0655920:intron 35.0%
GTTGACTAATTCGTCTTTCT+TGG + chr4_3:64882959-64882978 None:intergenic 35.0%
AATTAGTCAACCTTCAAAGC+AGG - chr4_3:64882968-64882987 Msa0655920:intron 35.0%
!! TCAATTGGAGATTTTAGTCG+CGG - chr4_3:64883044-64883063 Msa0655920:intron 35.0%
!! ATTTTAGTCGCGGTAAAGAT+GGG - chr4_3:64883054-64883073 Msa0655920:intron 35.0%
! TGGTAGAGGTTTTCTTGTAT+AGG - chr4_3:64883118-64883137 Msa0655920:intron 35.0%
! TAGAGGTTTTCTTGTATAGG+AGG - chr4_3:64883121-64883140 Msa0655920:intron 35.0%
TTACAGTCACAATCATCAAC+AGG + chr4_3:64883177-64883196 None:intergenic 35.0%
! TTGTGACTGTAAGATTTGCT+CGG - chr4_3:64883185-64883204 Msa0655920:intron 35.0%
GTGCAAGTAATACTTGTAGT+TGG - chr4_3:64883262-64883281 Msa0655920:intron 35.0%
GATGTGATGTTTGTTCACAT+TGG - chr4_3:64883289-64883308 Msa0655920:intron 35.0%
ACAATGAAACTGTATTTCCG+TGG + chr4_3:64883385-64883404 None:intergenic 35.0%
TATTGGATGTGAACATGCAT+CGG - chr4_3:64883404-64883423 Msa0655920:intron 35.0%
ACAATCAAGCTCTTTCAACA+AGG + chr4_3:64883490-64883509 None:intergenic 35.0%
AAATTGCATGATCTGATTGC+AGG + chr4_3:64883622-64883641 None:intergenic 35.0%
GAGTTAGTAGGATTGTGAAT+AGG - chr4_3:64883729-64883748 Msa0655920:CDS 35.0%
CATAACACCCATACCATATT+AGG + chr4_3:64884467-64884486 None:intergenic 35.0%
! TGGGTGTTATGTTACAAAGT+TGG - chr4_3:64884476-64884495 Msa0655920:CDS 35.0%
! GCAATGGTATTTTGCATTTG+AGG - chr4_3:64884516-64884535 Msa0655920:CDS 35.0%
!! TGGTATTTTGCATTTGAGGT+AGG - chr4_3:64884520-64884539 Msa0655920:CDS 35.0%
AGATGACACAACAAATCACA+GGG + chr4_3:64884700-64884719 None:intergenic 35.0%
AAGATGACACAACAAATCAC+AGG + chr4_3:64884701-64884720 None:intergenic 35.0%
!! TGTGATTTGTTGTGTCATCT+TGG - chr4_3:64884700-64884719 Msa0655920:CDS 35.0%
!! GTGATTTGTTGTGTCATCTT+GGG - chr4_3:64884701-64884720 Msa0655920:CDS 35.0%
GTTAAAGCTAAAGCAGGAAA+AGG + chr4_3:64884734-64884753 None:intergenic 35.0%
ATGAATAGATGCGGAAAACA+TGG - chr4_3:64884854-64884873 Msa0655920:CDS 35.0%
TTTGAAGAGAAAACAGAAGC+CGG + chr4_3:64884888-64884907 None:intergenic 35.0%
! TGATGACGATCTTCAATTAG+CGG - chr4_3:64885076-64885095 Msa0655920:CDS 35.0%
CAAAGGTGGAATTGAAAGTT+TGG - chr4_3:64885109-64885128 Msa0655920:CDS 35.0%
!! AAAGTTTGGAGAGCATTGTT+CGG - chr4_3:64885123-64885142 Msa0655920:CDS 35.0%
ATTGGATGAAATGAAAGTGG+TGG - chr4_3:64885316-64885335 Msa0655920:CDS 35.0%
GAAATTCTGCTTTGGTATTC+TGG - chr4_3:64885516-64885535 Msa0655920:CDS 35.0%
! TATTCTGGTTGTTTCCAGAA+TGG - chr4_3:64885531-64885550 Msa0655920:exon 35.0%
GCTATGATTGTGCTTGGTTT+CGG + chr4_3:64881711-64881730 None:intergenic 40.0%
GAACGAAGAGAGAGAAACTA+AGG + chr4_3:64881798-64881817 None:intergenic 40.0%
GCTGGTAAAGATCTTCGTAA+TGG - chr4_3:64881845-64881864 Msa0655920:three_prime_UTR 40.0%
!! AATGGTGTTGCTGATTCTGA+TGG - chr4_3:64881863-64881882 Msa0655920:three_prime_UTR 40.0%
! GGGTCTTGATAACTTACTTC+TGG + chr4_3:64881897-64881916 None:intergenic 40.0%
TCATCTGGGTAACGTTTGTT+TGG + chr4_3:64881929-64881948 None:intergenic 40.0%
!! TTTTCTGAGAGATTCCGACA+TGG - chr4_3:64881961-64881980 Msa0655920:CDS 40.0%
! TTTCTGAGAGATTCCGACAT+GGG - chr4_3:64881962-64881981 Msa0655920:CDS 40.0%
TTGACCCTGAGTTATCTATG+TGG - chr4_3:64882037-64882056 Msa0655920:CDS 40.0%
GGTTTCCACATAGATAACTC+AGG + chr4_3:64882045-64882064 None:intergenic 40.0%
TCTGAGTCAAAAGGGTAAAG+AGG - chr4_3:64882096-64882115 Msa0655920:CDS 40.0%
! CTGCTAGGTTTTACTCTAAC+AGG + chr4_3:64882352-64882371 None:intergenic 40.0%
CTGTTAGAGTAAAACCTAGC+AGG - chr4_3:64882350-64882369 Msa0655920:CDS 40.0%
! GACGATCAAATTTGGAACTG+TGG - chr4_3:64882529-64882548 Msa0655920:intron 40.0%
! CAAATTTGGAACTGTGGTGA+AGG - chr4_3:64882535-64882554 Msa0655920:intron 40.0%
!! AACTGTGGTGAAGGTACTAA+TGG - chr4_3:64882544-64882563 Msa0655920:intron 40.0%
CATAGCAGGTTTAAGCCAAT+TGG - chr4_3:64882574-64882593 Msa0655920:intron 40.0%
AGGTTTAAGCCAATTGGTGA+TGG - chr4_3:64882580-64882599 Msa0655920:intron 40.0%
GCAACAATACCATCACCAAT+TGG + chr4_3:64882592-64882611 None:intergenic 40.0%
!! TGGTGATGGTATTGTTGCTT+TGG - chr4_3:64882594-64882613 Msa0655920:intron 40.0%
!! ATTGTTGCTTTGGCAAATCC+TGG - chr4_3:64882604-64882623 Msa0655920:intron 40.0%
! CATAGGTTTGAGACTCATTC+AGG - chr4_3:64882733-64882752 Msa0655920:intron 40.0%
! TAGGTTTGAGACTCATTCAG+GGG - chr4_3:64882735-64882754 Msa0655920:intron 40.0%
GGAATCTTTCAAAACCAGAG+AGG - chr4_3:64882821-64882840 Msa0655920:intron 40.0%
CAAAACCAGAGAGGATTGTT+AGG - chr4_3:64882830-64882849 Msa0655920:intron 40.0%
ATTTCCCTAACAATCCTCTC+TGG + chr4_3:64882838-64882857 None:intergenic 40.0%
TTCCAAGGAGACACTTTCAA+AGG - chr4_3:64883011-64883030 Msa0655920:intron 40.0%
TCCAAGGAGACACTTTCAAA+GGG - chr4_3:64883012-64883031 Msa0655920:intron 40.0%
!! GATTTTAGTCGCGGTAAAGA+TGG - chr4_3:64883053-64883072 Msa0655920:intron 40.0%
AAGATTACCGTACAAGAAGC+TGG + chr4_3:64883085-64883104 None:intergenic 40.0%
!! TCAGTTATCTGAGTTGGTAG+AGG - chr4_3:64883104-64883123 Msa0655920:intron 40.0%
! TGTGACTGTAAGATTTGCTC+GGG - chr4_3:64883186-64883205 Msa0655920:intron 40.0%
! AAGATTTGCTCGGGAAACAA+AGG - chr4_3:64883195-64883214 Msa0655920:intron 40.0%
! AGATTTGCTCGGGAAACAAA+GGG - chr4_3:64883196-64883215 Msa0655920:intron 40.0%
GAACATGCATCGGAAATGTT+TGG - chr4_3:64883414-64883433 Msa0655920:intron 40.0%
TGTGTTCATGTCTTGTGCAA+AGG - chr4_3:64883449-64883468 Msa0655920:intron 40.0%
TCATGTCTTGTGCAAAGGAT+TGG - chr4_3:64883454-64883473 Msa0655920:intron 40.0%
CATGTCTTGTGCAAAGGATT+GGG - chr4_3:64883455-64883474 Msa0655920:intron 40.0%
ATGTCTTGTGCAAAGGATTG+GGG - chr4_3:64883456-64883475 Msa0655920:intron 40.0%
TGAAAGAGCTTGATTGTGTG+AGG - chr4_3:64883493-64883512 Msa0655920:intron 40.0%
! TTGTGTGAGGAGGATTTTCA+TGG - chr4_3:64883506-64883525 Msa0655920:intron 40.0%
! TGTGTGAGGAGGATTTTCAT+GGG - chr4_3:64883507-64883526 Msa0655920:intron 40.0%
GAGCTGCATTTGAAAACTGA+TGG - chr4_3:64883552-64883571 Msa0655920:intron 40.0%
AACTGTAAGTGTCTCGACTA+TGG - chr4_3:64883645-64883664 Msa0655920:intron 40.0%
AGTAGGATTGTGAATAGGGA+AGG - chr4_3:64883734-64883753 Msa0655920:CDS 40.0%
CAAACAATGATGAGGATGGA+TGG - chr4_3:64883961-64883980 Msa0655920:CDS 40.0%
GGAAAACATGGCAAACTTTC+CGG - chr4_3:64884866-64884885 Msa0655920:CDS 40.0%
! GGCTTCTGTTTTCTCTTCAA+AGG - chr4_3:64884887-64884906 Msa0655920:CDS 40.0%
ATGAGTCGAGCTATTCTACT+AGG - chr4_3:64884991-64885010 Msa0655920:CDS 40.0%
TATTCTACTAGGCCACATTC+CGG - chr4_3:64885002-64885021 Msa0655920:CDS 40.0%
CTTGATGTCTTCTTTGGATG+GGG + chr4_3:64885030-64885049 None:intergenic 40.0%
CCTTGATGTCTTCTTTGGAT+GGG + chr4_3:64885031-64885050 None:intergenic 40.0%
TTAGCGGCTTTACTAAGCAA+AGG - chr4_3:64885092-64885111 Msa0655920:CDS 40.0%
AGCGAAAATGTTCCAAACCA+AGG - chr4_3:64885160-64885179 Msa0655920:CDS 40.0%
TCTTTGTCCTGATCATCTTC+TGG + chr4_3:64885217-64885236 None:intergenic 40.0%
AATCATGGCCAAGTGAGAGA+GGG + chr4_3:64881825-64881844 None:intergenic 45.0%
AGATCCAGTGTCTGAACCTT+TGG + chr4_3:64882253-64882272 None:intergenic 45.0%
CAGACACTGGATCTTTCTCT+TGG - chr4_3:64882259-64882278 Msa0655920:CDS 45.0%
GCTTTGGCAAATCCTGGAAA+TGG - chr4_3:64882610-64882629 Msa0655920:intron 45.0%
GCAAATCCTGGAAATGGAAC+TGG - chr4_3:64882616-64882635 Msa0655920:intron 45.0%
CTAACACCAGTTCCATTTCC+AGG + chr4_3:64882625-64882644 None:intergenic 45.0%
TGTCTAGCAGGCAATTCAGA+AGG + chr4_3:64882715-64882734 None:intergenic 45.0%
CTGAATTGCCTGCTAGACAT+AGG - chr4_3:64882716-64882735 Msa0655920:intron 45.0%
GTCTCAAACCTATGTCTAGC+AGG + chr4_3:64882727-64882746 None:intergenic 45.0%
AGACTCATTCAGGGGATTCA+AGG - chr4_3:64882743-64882762 Msa0655920:intron 45.0%
GACTCATTCAGGGGATTCAA+GGG - chr4_3:64882744-64882763 Msa0655920:intron 45.0%
ACTCATTCAGGGGATTCAAG+GGG - chr4_3:64882745-64882764 Msa0655920:intron 45.0%
!! GAGAGTTTGAGGGGTTTTGA+AGG - chr4_3:64882778-64882797 Msa0655920:intron 45.0%
!!! AGGGGTTTTGAAGGTTTAGC+TGG - chr4_3:64882787-64882806 Msa0655920:intron 45.0%
!!! GGTTTTGAAGGTTTAGCTGG+TGG - chr4_3:64882790-64882809 Msa0655920:intron 45.0%
TTTGAAGGTTTAGCTGGTGG+TGG - chr4_3:64882793-64882812 Msa0655920:intron 45.0%
!! GTTTAGCTGGTGGTGGAAAT+AGG - chr4_3:64882800-64882819 Msa0655920:intron 45.0%
CGTTGATGTCACAACTTCCT+CGG + chr4_3:64882908-64882927 None:intergenic 45.0%
GGAAGTTGTGACATCAACGA+AGG - chr4_3:64882909-64882928 Msa0655920:intron 45.0%
TTCTCTCAAGCCTGCTTTGA+AGG + chr4_3:64882981-64883000 None:intergenic 45.0%
TTCAAAGCAGGCTTGAGAGA+AGG - chr4_3:64882980-64882999 Msa0655920:intron 45.0%
GAGAAGGTCTGATCTTTCCA+AGG - chr4_3:64882996-64883015 Msa0655920:intron 45.0%
!! ACCCTTTGAAAGTGTCTCCT+TGG + chr4_3:64883016-64883035 None:intergenic 45.0%
AACAGGAAGCAAACTCTTGC+AGG + chr4_3:64883160-64883179 None:intergenic 45.0%
CAGAAGAAGCTCATCAAACC+CGG - chr4_3:64883333-64883352 Msa0655920:intron 45.0%
TGTATTTCCGTGGTACCAGA+AGG + chr4_3:64883375-64883394 None:intergenic 45.0%
TGTCTTGTGCAAAGGATTGG+GGG - chr4_3:64883457-64883476 Msa0655920:intron 45.0%
AAGAGCTTGATTGTGTGAGG+AGG - chr4_3:64883496-64883515 Msa0655920:intron 45.0%
! GAGGATTTTCATGGGAAGTG+AGG - chr4_3:64883515-64883534 Msa0655920:intron 45.0%
ATCTGATTGCAGGCTTCTGA+AGG + chr4_3:64883612-64883631 None:intergenic 45.0%
CCTACTAACTCAAATGCTGC+AGG + chr4_3:64883720-64883739 None:intergenic 45.0%
! CCTGCAGCATTTGAGTTAGT+AGG - chr4_3:64883717-64883736 Msa0655920:intron 45.0%
ATGACACTGTGTCCTAGCAA+TGG - chr4_3:64884500-64884519 Msa0655920:CDS 45.0%
AACTGCAGCCCTATGAAACA+CGG - chr4_3:64884563-64884582 Msa0655920:CDS 45.0%
AGTGTTTGCATGTGAGTGTC+TGG + chr4_3:64884592-64884611 None:intergenic 45.0%
GTTGTGTCATCTTGGGTAGA+AGG - chr4_3:64884708-64884727 Msa0655920:CDS 45.0%
CCCATCCAAAGAAGACATCA+AGG - chr4_3:64885028-64885047 Msa0655920:CDS 45.0%
GCCTTGATGTCTTCTTTGGA+TGG + chr4_3:64885032-64885051 None:intergenic 45.0%
! GGTAGCCTTGATGTCTTCTT+TGG + chr4_3:64885036-64885055 None:intergenic 45.0%
!! GGAGAGCATTGTTCGGATAA+AGG - chr4_3:64885130-64885149 Msa0655920:CDS 45.0%
! GAGCATTGTTCGGATAAAGG+AGG - chr4_3:64885133-64885152 Msa0655920:CDS 45.0%
TTGCTTCATCTGCCTTGGTT+TGG + chr4_3:64885175-64885194 None:intergenic 45.0%
AAACCAAGGCAGATGAAGCA+AGG - chr4_3:64885174-64885193 Msa0655920:CDS 45.0%
AAGGGTTCCAGAAGATGATC+AGG - chr4_3:64885207-64885226 Msa0655920:CDS 45.0%
ACTCTGTCTGAATGATACCG+AGG - chr4_3:64885277-64885296 Msa0655920:CDS 45.0%
!! TGATGGTTTGTTGGCGAGAA+TGG - chr4_3:64885391-64885410 Msa0655920:CDS 45.0%
GTTCATCTCCCTCTCTCACT+TGG - chr4_3:64881814-64881833 Msa0655920:three_prime_UTR 50.0%
CAATCATGGCCAAGTGAGAG+AGG + chr4_3:64881826-64881845 None:intergenic 50.0%
TCTCACTTGGCCATGATTGC+TGG - chr4_3:64881827-64881846 Msa0655920:three_prime_UTR 50.0%
GATTCCGACATGGGTGGTAT+TGG - chr4_3:64881971-64881990 Msa0655920:CDS 50.0%
GTTACCACCAGAAACCTGGT+TGG + chr4_3:64882002-64882021 None:intergenic 50.0%
CTGAGTTACCACCAGAAACC+TGG + chr4_3:64882006-64882025 None:intergenic 50.0%
!! CAGGTTTCTGGTGGTAACTC+AGG - chr4_3:64882004-64882023 Msa0655920:CDS 50.0%
GAGACCAAAGGTTCAGACAC+TGG - chr4_3:64882246-64882265 Msa0655920:CDS 50.0%
TGAGTAGTTGAAGGCCTGCT+AGG + chr4_3:64882367-64882386 None:intergenic 50.0%
! CTAATGGCTCTGTGCATAGC+AGG - chr4_3:64882560-64882579 Msa0655920:intron 50.0%
GGACTGTCCAGCTTCTTGTA+CGG - chr4_3:64883075-64883094 Msa0655920:intron 50.0%
!! CATTGGTGCCATGCTGTTTG+TGG - chr4_3:64883306-64883325 Msa0655920:intron 50.0%
TCTGGATGCCACAAACAGCA+TGG + chr4_3:64883317-64883336 None:intergenic 50.0%
CGGGTTTGATGAGCTTCTTC+TGG + chr4_3:64883335-64883354 None:intergenic 50.0%
CCAGAAGGTCCTTTCAAGCT+CGG + chr4_3:64883360-64883379 None:intergenic 50.0%
GAAAGGACCTTCTGGTACCA+CGG - chr4_3:64883365-64883384 Msa0655920:intron 50.0%
ATGGGAAGTGAGGATCGCAA+AGG - chr4_3:64883525-64883544 Msa0655920:intron 50.0%
TGGGAAGTGAGGATCGCAAA+GGG - chr4_3:64883526-64883545 Msa0655920:intron 50.0%
AAGTGAGGATCGCAAAGGGA+AGG - chr4_3:64883530-64883549 Msa0655920:intron 50.0%
! GCATTTGAGGTAGGAAGCGT+TGG - chr4_3:64884529-64884548 Msa0655920:CDS 50.0%
ACTGCAGCCCTATGAAACAC+GGG - chr4_3:64884564-64884583 Msa0655920:CDS 50.0%
TCTGGTGCCCGTGTTTCATA+GGG + chr4_3:64884574-64884593 None:intergenic 50.0%
GCGGCTTTACTAAGCAAAGG+TGG - chr4_3:64885095-64885114 Msa0655920:CDS 50.0%
CAAGGCAGATGAAGCAAGGA+GGG - chr4_3:64885178-64885197 Msa0655920:CDS 50.0%
CAGGACAAAGACTGCACAGA+TGG - chr4_3:64885226-64885245 Msa0655920:CDS 50.0%
ATGATACCGAGGAAACGCAG+AGG - chr4_3:64885288-64885307 Msa0655920:CDS 50.0%
TTTCCTCCTCTGCGTTTCCT+CGG + chr4_3:64885297-64885316 None:intergenic 50.0%
GGAAACGCAGAGGAGGAAAT+TGG - chr4_3:64885298-64885317 Msa0655920:CDS 50.0%
!! TGGTTTGTTGGCGAGAATGG+AGG - chr4_3:64885394-64885413 Msa0655920:CDS 50.0%
TGGAGGCAACAAAGCAGCAT+TGG - chr4_3:64885411-64885430 Msa0655920:CDS 50.0%
GGAGGCAACAAAGCAGCATT+GGG - chr4_3:64885412-64885431 Msa0655920:CDS 50.0%
CTGAGAGATTCCGACATGGG+TGG - chr4_3:64881965-64881984 Msa0655920:CDS 55.0%
! TCCGACATGGGTGGTATTGG+TGG - chr4_3:64881974-64881993 Msa0655920:CDS 55.0%
CCCACCAATACCACCCATGT+CGG + chr4_3:64881978-64881997 None:intergenic 55.0%
!! CCGACATGGGTGGTATTGGT+GGG - chr4_3:64881975-64881994 Msa0655920:CDS 55.0%
!! TGGTATTGGTGGGTCCAACC+AGG - chr4_3:64881985-64882004 Msa0655920:CDS 55.0%
GACAATTCAGGAGCTTGCCG+AGG - chr4_3:64882888-64882907 Msa0655920:intron 55.0%
AAACCCGGACCGAGCTTGAA+AGG - chr4_3:64883348-64883367 Msa0655920:intron 55.0%
AGGTCCTTTCAAGCTCGGTC+CGG + chr4_3:64883355-64883374 None:intergenic 55.0%
CCGAGCTTGAAAGGACCTTC+TGG - chr4_3:64883357-64883376 Msa0655920:intron 55.0%
GTCTGGTGCCCGTGTTTCAT+AGG + chr4_3:64884575-64884594 None:intergenic 55.0%
!! CTTTGGAAGGCTGGCTTGAG+AGG + chr4_3:64884922-64884941 None:intergenic 55.0%
CTCTCAAGCCAGCCTTCCAA+AGG - chr4_3:64884920-64884939 Msa0655920:CDS 55.0%
GAGACAGCGTGTCCTTTGGA+AGG + chr4_3:64884935-64884954 None:intergenic 55.0%
GGAAGAGACAGCGTGTCCTT+TGG + chr4_3:64884939-64884958 None:intergenic 55.0%
GTCTTCTTTGGATGGGGCAC+CGG + chr4_3:64885024-64885043 None:intergenic 55.0%
CCTCCTTGCTTCATCTGCCT+TGG + chr4_3:64885180-64885199 None:intergenic 55.0%
CCAAGGCAGATGAAGCAAGG+AGG - chr4_3:64885177-64885196 Msa0655920:CDS 55.0%
ATACCGAGGAAACGCAGAGG+AGG - chr4_3:64885291-64885310 Msa0655920:CDS 55.0%
GGTGGGTCCAACCAGGTTTC+TGG - chr4_3:64881992-64882011 Msa0655920:CDS 60.0%
! GGGTCCAACCAGGTTTCTGG+TGG - chr4_3:64881995-64882014 Msa0655920:CDS 60.0%
GGTCCTTTCAAGCTCGGTCC+GGG + chr4_3:64883354-64883373 None:intergenic 60.0%
! CAGCGTGTCCTTTGGAAGGC+TGG + chr4_3:64884931-64884950 None:intergenic 60.0%
!! TTGGATGGGGCACCGGAATG+TGG + chr4_3:64885017-64885036 None:intergenic 60.0%
GGCAGATGAAGCAAGGAGGG+CGG - chr4_3:64885181-64885200 Msa0655920:CDS 60.0%
AAGCAAGGAGGGCGGCAGAA+GGG - chr4_3:64885189-64885208 Msa0655920:CDS 60.0%
GAAGCAAGGAGGGCGGCAGA+AGG - chr4_3:64885188-64885207 Msa0655920:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 64881702 64885674 64881702 ID=Msa0655920;Name=Msa0655920
chr4_3 mRNA 64881702 64885674 64881702 ID=Msa0655920-mRNA-1;Parent=Msa0655920;Name=Msa0655920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=137|1|1|1|1|1|2|235|795
chr4_3 exon 64881702 64882514 64881702 ID=Msa0655920-mRNA-1:exon:18373;Parent=Msa0655920-mRNA-1
chr4_3 exon 64883728 64885674 64883728 ID=Msa0655920-mRNA-1:exon:18372;Parent=Msa0655920-mRNA-1
chr4_3 five_prime_UTR 64885538 64885674 64885538 ID=Msa0655920-mRNA-1:five_prime_utr;Parent=Msa0655920-mRNA-1
chr4_3 CDS 64883728 64885537 64883728 ID=Msa0655920-mRNA-1:cds;Parent=Msa0655920-mRNA-1
chr4_3 CDS 64881937 64882514 64881937 ID=Msa0655920-mRNA-1:cds;Parent=Msa0655920-mRNA-1
chr4_3 three_prime_UTR 64881702 64881936 64881702 ID=Msa0655920-mRNA-1:three_prime_utr;Parent=Msa0655920-mRNA-1
Gene Sequence

>Msa0655920

ATGATTGCTGGTAAAGATCTTCGTAATGGTGTTGCTGATTCTGATGGTGAAAACTCCAGAAGTAAGTTATCAAGACCCAATTTTGATCCAAACAAACGTTACCCAGATGAAAAAGATGCTGTTTTTCTGAGAGATTCCGACATGGGTGGTATTGGTGGGTCCAACCAGGTTTCTGGTGGTAACTCAGGTTTTCAAGAATTGACCCTGAGTTATCTATGTGGAAACCCAAGATTGAAAGAGATTCAAGGTGAAAGCTTTCTGAGTCAAAAGGGTAAAGAGGTTATGGTTTCTGAGAATTCAAATCAAGATGGAGGAAAATGGGTTGAAAGAGATTTTCTTAGTTTGAGTGATTCTTCAAAGAGATCTATTGAAGAAGATGCTGAAAGAGAGAGTAATATTAGGGATAAGAGACCAAAGGTTCAGACACTGGATCTTTCTCTTGGTTTACCTGATGTTTCTCTTTCTCTTACTGCTTCAAATGCTTTTCACAACAATGGTGATCATCAACAACCTGTTAGAGTAAAACCTAGCAGGCCTTCAACTACTCATACTTCATATTCAAATGATTATACAGCTCCTTTGTCTCATTCTTATTCTAACGCCTTTTCATTTTCAAATGGCTTTTCACATAATCCAAGTTGTTCTTTAACTCGTAATTCAACGGATAATTTTGATTATTCCGCGAGTAAAGACGATCAAATTTGGAACTGTGGTGAAGGTACTAATGGCTCTGTGCATAGCAGGTTTAAGCCAATTGGTGATGGTATTGTTGCTTTGGCAAATCCTGGAAATGGAACTGGTGTTAGTTCATTTATGCAACCAGGTAATAGTAGTCATTATAAAACGACTAGTTCTGAAAACCATTCTTTTTTTCCTTCTGAATTGCCTGCTAGACATAGGTTTGAGACTCATTCAGGGGATTCAAGGGGAAGAAATTCTGAGAGTTTGAGGGGTTTTGAAGGTTTAGCTGGTGGTGGAAATAGGAATCTTTCAAAACCAGAGAGGATTGTTAGGGAAATTATTTGGGAGTCTGTTCCTATTTTTTCATTGACAATTCAGGAGCTTGCCGAGGAAGTTGTGACATCAACGAAGGAGTACTTGAAGAATCTTATTGAGACCAAGAAAGACGAATTAGTCAACCTTCAAAGCAGGCTTGAGAGAAGGTCTGATCTTTCCAAGGAGACACTTTCAAAGGGTACTAAAGTTCAATTGGAGATTTTAGTCGCGGTAAAGATGGGACTGTCCAGCTTCTTGTACGGTAATCTTCAGTTATCTGAGTTGGTAGAGGTTTTCTTGTATAGGAGGTGTAGAAATGTTACCTGCAAGAGTTTGCTTCCTGTTGATGATTGTGACTGTAAGATTTGCTCGGGAAACAAAGGGTTTTGTAGCTCTTGTATGTGTCCTATTTGTTTGAACTTTGATTGTGCAAGTAATACTTGTAGTTGGATTGGATGTGATGTTTGTTCACATTGGTGCCATGCTGTTTGTGGCATCCAGAAGAAGCTCATCAAACCCGGACCGAGCTTGAAAGGACCTTCTGGTACCACGGAAATACAGTTTCATTGTATTGGATGTGAACATGCATCGGAAATGTTTGGATTTGTTAAAGATGTGTTCATGTCTTGTGCAAAGGATTGGGGGATTGAAACCTTGTTGAAAGAGCTTGATTGTGTGAGGAGGATTTTCATGGGAAGTGAGGATCGCAAAGGGAAGGAGCTGCATTTGAAAACTGATGGCTTGCTATTAAAGCTTCAAGCTAAAATAGTATCTCCTTCAGAAGCCTGCAATCAGATCATGCAATTTTTCAACTATGCGGAAAACATGGCAAACTTTCCGGCTTCTGTTTTCTCTTCAAAGGAATTGATAGCCTCTCAAGCCAGCCTTCCAAAGGACACGCTGTCTCTTCCAAAATCTAGTTCTTCAATACAGAAATACGCTTATGAGTCGAGCTATTCTACTAGGCCACATTCCGGTGCCCCATCCAAAGAAGACATCAAGGCTACCATCTTTAGCGAACTAAAAAATGATGACGATCTTCAATTAGCGGCTTTACTAAGCAAAGGTGGAATTGAAAGTTTGGAGAGCATTGTTCGGATAAAGGAGGCAGAAGCGAAAATGTTCCAAACCAAGGCAGATGAAGCAAGGAGGGCGGCAGAAGGGTTCCAGAAGATGATCAGGACAAAGACTGCACAGATGGATGAAGAGTATGCGACAAAGCTTTCAAAACTCTGTCTGAATGATACCGAGGAAACGCAGAGGAGGAAATTGGATGAAATGAAAGTGGTGGAAAATTCTTGTGTTGATTACTATAAAATGAAAAAGAAAATGCAAGATGAAATTGATGGTTTGTTGGCGAGAATGGAGGCAACAAAGCAGCATTGGGTTTAA

Protein sequence

>Msa0655920

MIAGKDLRNGVADSDGENSRSKLSRPNFDPNKRYPDEKDAVFLRDSDMGGIGGSNQVSGGNSGFQELTLSYLCGNPRLKEIQGESFLSQKGKEVMVSENSNQDGGKWVERDFLSLSDSSKRSIEEDAERESNIRDKRPKVQTLDLSLGLPDVSLSLTASNAFHNNGDHQQPVRVKPSRPSTTHTSYSNDYTAPLSHSYSNAFSFSNGFSHNPSCSLTRNSTDNFDYSASKDDQIWNCGEGTNGSVHSRFKPIGDGIVALANPGNGTGVSSFMQPGNSSHYKTTSSENHSFFPSELPARHRFETHSGDSRGRNSESLRGFEGLAGGGNRNLSKPERIVREIIWESVPIFSLTIQELAEEVVTSTKEYLKNLIETKKDELVNLQSRLERRSDLSKETLSKGTKVQLEILVAVKMGLSSFLYGNLQLSELVEVFLYRRCRNVTCKSLLPVDDCDCKICSGNKGFCSSCMCPICLNFDCASNTCSWIGCDVCSHWCHAVCGIQKKLIKPGPSLKGPSGTTEIQFHCIGCEHASEMFGFVKDVFMSCAKDWGIETLLKELDCVRRIFMGSEDRKGKELHLKTDGLLLKLQAKIVSPSEACNQIMQFFNYAENMANFPASVFSSKELIASQASLPKDTLSLPKSSSSIQKYAYESSYSTRPHSGAPSKEDIKATIFSELKNDDDLQLAALLSKGGIESLESIVRIKEAEAKMFQTKADEARRAAEGFQKMIRTKTAQMDEEYATKLSKLCLNDTEETQRRKLDEMKVVENSCVDYYKMKKKMQDEIDGLLARMEATKQHWV*