AlfalfaGEDB | Msa0616450

M. sativa cultivar zhongmu-4 / Msa0616450

KEGG: -
GO: GO:0001708 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009880 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0030154 GO:0032501 GO:0032502 GO:0045165 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0090421
PFAM: PF07227.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0616450	XP_039685191.1	96.380	801	23	2	1	795	1	801	0.0	1595

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0616450	sp\|Q94B71\|OBE3_ARATH	51.644	821	283	27	1	795	1	733	0.0	700

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0616450	0.839715	1.342040e-57	-8.615850e-47
Msa0003220	Msa0616450	0.810373	1.190713e-50	-8.615850e-47
Msa0008220	Msa0616450	0.802340	5.875769e-49	-8.615850e-47
Msa0010490	Msa0616450	0.803185	3.932634e-49	-8.615850e-47
Msa0010770	Msa0616450	0.804953	1.686318e-49	-8.615850e-47
Msa0011930	Msa0616450	0.823788	1.146928e-53	-8.615850e-47
Msa0012710	Msa0616450	0.833225	6.024728e-56	-8.615850e-47
Msa0012940	Msa0616450	0.805613	1.226600e-49	-8.615850e-47
Msa0014570	Msa0616450	0.812402	4.316435e-51	-8.615850e-47
Msa0017320	Msa0616450	0.836431	9.395687e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0616450	MtrunA17_Chr8g0376011	96.380	801	23	2	1	795	1	801	0.0	1595
Msa0616450	MtrunA17_Chr4g0019561	36.506	704	364	16	143	791	519	1194	6.66e-121	392
Msa0616450	MtrunA17_Chr5g0447621	37.639	449	264	7	328	765	79	522	4.53e-91	297

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0616450	AT1G14740.1	51.644	821	283	27	1	795	1	733	0.0	700
Msa0616450	AT3G63500.1	35.982	667	352	19	171	792	247	883	1.79e-110	358
Msa0616450	AT3G63500.2	35.982	667	352	19	171	792	522	1158	2.34e-108	358
Msa0616450	AT3G63500.3	35.982	667	352	19	171	792	522	1158	2.34e-108	358
Msa0616450	AT5G48160.2	39.101	445	247	8	337	767	93	527	1.87e-89	293
Msa0616450	AT5G48160.1	39.101	445	247	8	337	767	93	527	1.87e-89	293
Msa0616450	AT3G07780.3	38.034	468	261	10	310	760	63	518	3.72e-86	284
Msa0616450	AT3G07780.1	38.034	468	261	10	310	760	63	518	3.72e-86	284
Msa0616450	AT3G07780.2	38.034	468	261	10	310	760	74	529	8.55e-86	284

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Find 199 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGAGAGGATTGTTA+GGG	0.469024	4_2:-66256375	Msa0616450:CDS
AAAATGCAAGATGAAATTGA+TGG	0.424314	4_2:-66253832	Msa0616450:CDS
AAACCAAGGCAGATGAAGCA+AGG	0.604039	4_2:-66254032	Msa0616450:CDS
AAACCGGGACCGAGCTTGAA+AGG	0.493130	4_2:-66255858	Msa0616450:CDS
AAAGCCATTTGAAAATGAAA+AGG	0.513640	4_2:+66256766	None:intergenic
AAAGGGTACTAAAGTTCAAT+TGG	0.350020	4_2:-66256177	Msa0616450:CDS
AAAGTTTGGAGAGCATTGTT+CGG	0.498175	4_2:-66254083	Msa0616450:CDS
AAATCAAGATGGAGGAAAAT+GGG	0.449888	4_2:-66257068	Msa0616450:CDS
AAATTGAAAATCATCCATTC+TGG	0.334409	4_2:+66253661	None:intergenic
AAATTGCATGATCTGATTGC+AGG	0.425913	4_2:+66255587	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTTTGTTTGGATCAAAATT+GGG	+	chr4_2:66253769-66253788	None:intergenic	30.0%
ACGTTTGTTTGGATCAAAAT+TGG	+	chr4_2:66253770-66253789	None:intergenic	30.0%
CTTGAATCTCTTTCAATCTT+GGG	+	chr4_2:66253918-66253937	None:intergenic	30.0%
TCTGAGAATTCAAATCAAGA+TGG	-	chr4_2:66253979-66253998	Msa0616450:CDS	30.0%
AAATCAAGATGGAGGAAAAT+GGG	-	chr4_2:66253990-66254009	Msa0616450:CDS	30.0%
CTGAAAGAGAGAGTAATATT+AGG	-	chr4_2:66254070-66254089	Msa0616450:CDS	30.0%
TATGAAGTATGAGTAGTTGA+AGG	+	chr4_2:66254228-66254247	None:intergenic	30.0%
TTACGAGTTAAAGAACAACT+TGG	+	chr4_2:66254327-66254346	None:intergenic	30.0%
GGATTGTTAGGGAAATTATT+TGG	-	chr4_2:66254694-66254713	Msa0616450:intron	30.0%
TAATCTTCAGTTATCTGAGT+TGG	-	chr4_2:66254950-66254969	Msa0616450:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	66253554	66257526	66253554	ID=Msa0616450;Name=Msa0616450
chr4_2	mRNA	66253554	66257526	66253554	ID=Msa0616450-mRNA-1;Parent=Msa0616450;Name=Msa0616450-mRNA-1;_AED=0.00;_eAED=0.00;_QI=137\|1\|1\|1\|1\|1\|2\|235\|795
chr4_2	exon	66253554	66254366	66253554	ID=Msa0616450-mRNA-1:exon:18842;Parent=Msa0616450-mRNA-1
chr4_2	exon	66255580	66257526	66255580	ID=Msa0616450-mRNA-1:exon:18841;Parent=Msa0616450-mRNA-1
chr4_2	five_prime_UTR	66257390	66257526	66257390	ID=Msa0616450-mRNA-1:five_prime_utr;Parent=Msa0616450-mRNA-1
chr4_2	CDS	66255580	66257389	66255580	ID=Msa0616450-mRNA-1:cds;Parent=Msa0616450-mRNA-1
chr4_2	CDS	66253789	66254366	66253789	ID=Msa0616450-mRNA-1:cds;Parent=Msa0616450-mRNA-1
chr4_2	three_prime_UTR	66253554	66253788	66253554	ID=Msa0616450-mRNA-1:three_prime_utr;Parent=Msa0616450-mRNA-1

Gene Sequence

>Msa0616450

ATGATTGCTGGTAAAGATCTTCGTAATGGTGTTGCTGATTCTGATGGTGAAAACTCCAGAAGTAAGTTATCAAGACCCAATTTTGATCCAAACAAACGTTACCCAGATGAAAAAGATGCTGTTTTTCTGAGAGATTCCGACATGGGTGGTATTGGTGGGTCCAACCAGGTTTCTGGTGGTAACTCAGGTTTTCAAGAATTGACCCTGAGTTATCTATGTGGAAACCCAAGATTGAAAGAGATTCAAGGTGAAAGCTTTCTGAGTCAAAAGGGTAAAGAGGTTATGGTTTCTGAGAATTCAAATCAAGATGGAGGAAAATGGGTTGAAAGAGATTTTCTTAGTTTGAGTGATTCTTCAAAGAGATCTATTGAAGAAGATGCTGAAAGAGAGAGTAATATTAGGGATAAGAGACCAAAGGTTCAGACACTGGATCTTTCTCTTGGTTTACCTGATGTTTCTCTTTCTCTTACTGCTTCAAATGCTTTTCACAACAATGGTGATCATCAACAACCTGTTAGAGTAAAACCTAGCAGGCCTTCAACTACTCATACTTCATATTCAAATGATTATACAGCTCCTTTGTCTCATTCTTATTCTAACGCCTTTTCATTTTCAAATGGCTTTTCACATAATCCAAGTTGTTCTTTAACTCGTAATTCAACGGATAATTTTGATTATTCCGCGAGTAAAGACGATCAAATTTGGAACTGTGGTGAAGGTACTAATGGCTCTGTGCATAGCAGGTTTAAGCCAATTGGTGATGGTATTGTTGCTTTGGCAAATCCTGGAAATGGAACTGGTGTTAGTTCATTTATGCAACCAGGTAATAGTAGTCATTATAAAACGACTAGTTCTGAAAACCATTCTTTTTTTCCTTCTGAATTGCCTGCTAGACATAGGTTTGAGACTCATTCAGGGGATTCAAGGGGAAGAAATTCTGAGAGTTTGAGGGGTTTTGAAGGTTTAGATGGTGGTGGAAATAGGAATCTTTCAAAACCAGAGAGGATTGTTAGGGAAATTATTTGGGAGTCTGTTCCTATTTTTTCATTGACAATTCAGGAGCTTGCCGAGGAAGTTGTGACATCAACGAAGGAGTACTTGAAGAATCTTATTGAGACCAAGAAAGACGAATTAGTCAACCTTCAAAGCAGGCTTGAGAGAAGGTCTGATCTTTCCAAGGAGACACTTTCAAAGGGTACTAAAGTTCAATTGGAGATTTTAGTCGCGGTAAAGATGGGACTGTCCAGCTTCTTGTACGGTAATCTTCAGTTATCTGAGTTGGTAGAGGTTTTCTTGTATAGGAGGTGTAGAAATGTTACCTGCAAGAGTTTGCTTCCTGTTGATGATTGTGACTGTAAGATTTGCTCGGGAAACAAAGGGTTTTGTAGCTCTTGTATGTGTCCTATTTGTTTGAACTTTGATTGTGCAAGTAATACTTGTAGTTGGATTGGATGTGATGTTTGTTCACATTGGTGCCATGCTGTTTGTGGCATCCAGAAGAAGCTCATCAAACCGGGACCGAGCTTGAAAGGACCTTCTGGTACCACGGAAATACAGTTTCATTGTATTGGATGTGAACATGCATCGGAAATGTTTGGATTTGTTAAAGATGTGTTCATGTCTTGTGCAAAGGATTGGGGGATTGAAACCTTGTTGAAAGAGCTTGATTGTGTGAGGAGGATTTTCATGGGAAGTGAGGATCGCAAAGGGAAGGAGCTGCATTTGAAAACTGATGGCTTGCTATTAAAACTTCAAGCTAAAATAGTATCTCCTTCAGAAGCCTGCAATCAGATCATGCAATTTTTCAACTATGCGGAAAACATGGCAAACTTTCCGGCTTCTGTTTTCTCTTCAAAGGAATTGATAGCCTCTCAAGCCAGCCTTCCAAAGGACACGCTGTCTCTTCCAAAATCTAGTTCTTCAATACAGAAATACGCTTATGAGTCGAGCTATTCTACTAGGCCACATTCCGGTGCCCCATCCAAAGAAGACATCAAGGCTACCATCTTTAGCGAACTAAAAAATGATGACGATCTTCAATTAGCGGCTTTACTAAGCAAAGGTGGAATTGAAAGTTTGGAGAGCATTGTTCGGATAAAGGAGGCAGAAGCGAAAATGTTCCAAACCAAGGCAGATGAAGCAAGGAGGGCGGCAGAAGGGTTCCAGAAGATGATCAGGACAAAGACTGCACAGATGGATGAAGAGTATGCGACAAAGCTTTCAAAACTCTGTCTGAATGATACCGAGGAAACGCAGAGGAGGAAATTGGATGAAATGAAAGTGGTGGAAAATTCTTGTGTTGATTACTATAAAATGAAAAAGAAAATGCAAGATGAAATTGATGGTTTGTTGGCGAGAATGGAGGCAACAAAGCAGCATTGGGTTTAA

Protein sequence

>Msa0616450

MIAGKDLRNGVADSDGENSRSKLSRPNFDPNKRYPDEKDAVFLRDSDMGGIGGSNQVSGGNSGFQELTLSYLCGNPRLKEIQGESFLSQKGKEVMVSENSNQDGGKWVERDFLSLSDSSKRSIEEDAERESNIRDKRPKVQTLDLSLGLPDVSLSLTASNAFHNNGDHQQPVRVKPSRPSTTHTSYSNDYTAPLSHSYSNAFSFSNGFSHNPSCSLTRNSTDNFDYSASKDDQIWNCGEGTNGSVHSRFKPIGDGIVALANPGNGTGVSSFMQPGNSSHYKTTSSENHSFFPSELPARHRFETHSGDSRGRNSESLRGFEGLDGGGNRNLSKPERIVREIIWESVPIFSLTIQELAEEVVTSTKEYLKNLIETKKDELVNLQSRLERRSDLSKETLSKGTKVQLEILVAVKMGLSSFLYGNLQLSELVEVFLYRRCRNVTCKSLLPVDDCDCKICSGNKGFCSSCMCPICLNFDCASNTCSWIGCDVCSHWCHAVCGIQKKLIKPGPSLKGPSGTTEIQFHCIGCEHASEMFGFVKDVFMSCAKDWGIETLLKELDCVRRIFMGSEDRKGKELHLKTDGLLLKLQAKIVSPSEACNQIMQFFNYAENMANFPASVFSSKELIASQASLPKDTLSLPKSSSSIQKYAYESSYSTRPHSGAPSKEDIKATIFSELKNDDDLQLAALLSKGGIESLESIVRIKEAEAKMFQTKADEARRAAEGFQKMIRTKTAQMDEEYATKLSKLCLNDTEETQRRKLDEMKVVENSCVDYYKMKKKMQDEIDGLLARMEATKQHWV*