AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0616450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616450 MtrunA17_Chr8g0376011 96.380 801 23 2 1 795 1 801 0.0 1595
Msa0616450 MtrunA17_Chr4g0019561 36.506 704 364 16 143 791 519 1194 6.66e-121 392
Msa0616450 MtrunA17_Chr5g0447621 37.639 449 264 7 328 765 79 522 4.53e-91 297
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616450 AT1G14740.1 51.644 821 283 27 1 795 1 733 0.0 700
Msa0616450 AT3G63500.1 35.982 667 352 19 171 792 247 883 1.79e-110 358
Msa0616450 AT3G63500.2 35.982 667 352 19 171 792 522 1158 2.34e-108 358
Msa0616450 AT3G63500.3 35.982 667 352 19 171 792 522 1158 2.34e-108 358
Msa0616450 AT5G48160.2 39.101 445 247 8 337 767 93 527 1.87e-89 293
Msa0616450 AT5G48160.1 39.101 445 247 8 337 767 93 527 1.87e-89 293
Msa0616450 AT3G07780.3 38.034 468 261 10 310 760 63 518 3.72e-86 284
Msa0616450 AT3G07780.1 38.034 468 261 10 310 760 63 518 3.72e-86 284
Msa0616450 AT3G07780.2 38.034 468 261 10 310 760 74 529 8.55e-86 284

Find 199 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGGTCCAACCAGGTTTC+TGG 0.125739 4_2:-66257214 Msa0616450:CDS
GGATTGTTAGGGAAATTATT+TGG 0.126528 4_2:-66256364 Msa0616450:CDS
ACGTTTGTTTGGATCAAAAT+TGG 0.188283 4_2:+66257291 None:intergenic
TGTATTGAAGAACTAGATTT+TGG 0.193389 4_2:+66254249 None:intergenic
GAAATTCTGCTTTGGTATTC+TGG 0.199428 4_2:-66253690 Msa0616450:three_prime_UTR
AATTTATAGATTCAAGATTT+TGG 0.200472 4_2:-66253636 Msa0616450:three_prime_UTR
CCGGTTTGATGAGCTTCTTC+TGG 0.202108 4_2:+66255874 None:intergenic
CCTTGAATCTCTTTCAATCT+TGG 0.204571 4_2:+66257142 None:intergenic
GGAAAACATGGCAAACTTTC+CGG 0.213766 4_2:-66254340 Msa0616450:CDS
CTGAAAGAGAGAGTAATATT+AGG 0.226791 4_2:-66256988 Msa0616450:CDS
CAAATCAAGATGGAGGAAAA+TGG 0.235949 4_2:-66257069 Msa0616450:CDS
CATAGGTTTGAGACTCATTC+AGG 0.239156 4_2:-66256473 Msa0616450:CDS
CGAGTAAAGACGATCAAATT+TGG 0.254395 4_2:-66256685 Msa0616450:CDS
CTTGAATCTCTTTCAATCTT+GGG 0.262464 4_2:+66257143 None:intergenic
CAAAGGTGGAATTGAAAGTT+TGG 0.262902 4_2:-66254097 Msa0616450:CDS
GTTGACTAATTCGTCTTTCT+TGG 0.266243 4_2:+66256250 None:intergenic
GGTAGCCTTGATGTCTTCTT+TGG 0.277127 4_2:+66254173 None:intergenic
TTCTCTCAAGCCTGCTTTGA+AGG 0.277570 4_2:+66256228 None:intergenic
TCTTTGTCCTGATCATCTTC+TGG 0.278880 4_2:+66253992 None:intergenic
GGGTCTTGATAACTTACTTC+TGG 0.293426 4_2:+66257312 None:intergenic
CAAAACCAGAGAGGATTGTT+AGG 0.305807 4_2:-66256376 Msa0616450:CDS
GTTTAGATGGTGGTGGAAAT+AGG 0.307485 4_2:-66256406 Msa0616450:CDS
TTGCTTCATCTGCCTTGGTT+TGG 0.325105 4_2:+66254034 None:intergenic
AACAGGAAGCAAACTCTTGC+AGG 0.328838 4_2:+66256049 None:intergenic
GGAAACGCAGAGGAGGAAAT+TGG 0.331271 4_2:-66253908 Msa0616450:CDS
AAATTGAAAATCATCCATTC+TGG 0.334409 4_2:+66253661 None:intergenic
GATTGTTAGGGAAATTATTT+GGG 0.334809 4_2:-66256363 Msa0616450:CDS
GAAATACAGTTTCATTGTAT+TGG 0.337353 4_2:-66255819 Msa0616450:CDS
TCATCTGGGTAACGTTTGTT+TGG 0.346007 4_2:+66257280 None:intergenic
GGAGAGCATTGTTCGGATAA+AGG 0.349420 4_2:-66254076 Msa0616450:CDS
TCTCACTTGGCCATGATTGC+TGG 0.349920 4_2:-66257379 Msa0616450:exon
AAAGGGTACTAAAGTTCAAT+TGG 0.350020 4_2:-66256177 Msa0616450:CDS
TCAAAAGGGTAAAGAGGTTA+TGG 0.350376 4_2:-66257104 Msa0616450:CDS
TGATGGTTTGTTGGCGAGAA+TGG 0.357589 4_2:-66253815 Msa0616450:CDS
GCCTTGATGTCTTCTTTGGA+TGG 0.364546 4_2:+66254177 None:intergenic
CCTCCTTGCTTCATCTGCCT+TGG 0.368229 4_2:+66254029 None:intergenic
CAGACACTGGATCTTTCTCT+TGG 0.372476 4_2:-66256947 Msa0616450:CDS
CATGTCTTGTGCAAAGGATT+GGG 0.372506 4_2:-66255751 Msa0616450:CDS
CTAACACCAGTTCCATTTCC+AGG 0.389427 4_2:+66256584 None:intergenic
GAAGAAATTCTGAGAGTTTG+AGG 0.392536 4_2:-66256439 Msa0616450:CDS
AGATCCAGTGTCTGAACCTT+TGG 0.396783 4_2:+66256956 None:intergenic
CAATCAAAGTTCAAACAAAT+AGG 0.398951 4_2:+66255966 None:intergenic
TGAAAGAGAGAGTAATATTA+GGG 0.403143 4_2:-66256987 Msa0616450:CDS
GCTATGATTGTGCTTGGTTT+CGG 0.404943 4_2:+66257498 None:intergenic
CATTGGTGCCATGCTGTTTG+TGG 0.409509 4_2:-66255900 Msa0616450:CDS
CGTTTGTTTGGATCAAAATT+GGG 0.410561 4_2:+66257292 None:intergenic
AATTTATTGAAATTCTGCTT+TGG 0.413651 4_2:-66253698 Msa0616450:three_prime_UTR
TCATGTCTTGTGCAAAGGAT+TGG 0.416223 4_2:-66255752 Msa0616450:CDS
CAGCGTGTCCTTTGGAAGGC+TGG 0.422697 4_2:+66254278 None:intergenic
AAAATGCAAGATGAAATTGA+TGG 0.424314 4_2:-66253832 Msa0616450:CDS
AAATTGCATGATCTGATTGC+AGG 0.425913 4_2:+66255587 None:intergenic
CATAGCAGGTTTAAGCCAAT+TGG 0.429977 4_2:-66256632 Msa0616450:CDS
CCTTGATGTCTTCTTTGGAT+GGG 0.432069 4_2:+66254178 None:intergenic
GTCTTCTTTGGATGGGGCAC+CGG 0.435369 4_2:+66254185 None:intergenic
TGGTGATGGTATTGTTGCTT+TGG 0.436883 4_2:-66256612 Msa0616450:CDS
GGAAGAGACAGCGTGTCCTT+TGG 0.438392 4_2:+66254270 None:intergenic
TCCGACATGGGTGGTATTGG+TGG 0.438973 4_2:-66257232 Msa0616450:CDS
TGAAAGCTTTCTGAGTCAAA+AGG 0.442484 4_2:-66257119 Msa0616450:CDS
GTGCAAGTAATACTTGTAGT+TGG 0.443206 4_2:-66255944 Msa0616450:CDS
GAACATGCATCGGAAATGTT+TGG 0.443604 4_2:-66255792 Msa0616450:CDS
GTTCATCTCCCTCTCTCACT+TGG 0.445704 4_2:-66257392 Msa0616450:five_prime_UTR
GCTTTGGCAAATCCTGGAAA+TGG 0.447587 4_2:-66256596 Msa0616450:CDS
CCGAGCTTGAAAGGACCTTC+TGG 0.449486 4_2:-66255849 Msa0616450:CDS
AAATCAAGATGGAGGAAAAT+GGG 0.449888 4_2:-66257068 Msa0616450:CDS
TATTCTACTAGGCCACATTC+CGG 0.450993 4_2:-66254204 Msa0616450:CDS
CCAGAAGAAGCTCATCAAAC+CGG 0.451534 4_2:-66255874 Msa0616450:CDS
ACCCTTTGAAAGTGTCTCCT+TGG 0.451962 4_2:+66256193 None:intergenic
CTTGATGTCTTCTTTGGATG+GGG 0.454272 4_2:+66254179 None:intergenic
GATTCCGACATGGGTGGTAT+TGG 0.455133 4_2:-66257235 Msa0616450:CDS
AACTGTGGTGAAGGTACTAA+TGG 0.457321 4_2:-66256662 Msa0616450:CDS
AGACTCATTCAGGGGATTCA+AGG 0.459390 4_2:-66256463 Msa0616450:CDS
ATTTCCCTAACAATCCTCTC+TGG 0.459574 4_2:+66256371 None:intergenic
TGGAGGCAACAAAGCAGCAT+TGG 0.463387 4_2:-66253795 Msa0616450:CDS
CTTTGGAAGGCTGGCTTGAG+AGG 0.464312 4_2:+66254287 None:intergenic
GGAGGCAACAAAGCAGCATT+GGG 0.465244 4_2:-66253794 Msa0616450:CDS
CAGGTTTCTGGTGGTAACTC+AGG 0.465258 4_2:-66257202 Msa0616450:CDS
CTGAATTGCCTGCTAGACAT+AGG 0.465919 4_2:-66256490 Msa0616450:CDS
TTTCCTCCTCTGCGTTTCCT+CGG 0.466448 4_2:+66253912 None:intergenic
ATTGTTGCTTTGGCAAATCC+TGG 0.468736 4_2:-66256602 Msa0616450:CDS
AAAACCAGAGAGGATTGTTA+GGG 0.469024 4_2:-66256375 Msa0616450:CDS
GAACGAAGAGAGAGAAACTA+AGG 0.469538 4_2:+66257411 None:intergenic
AAGGGTTCCAGAAGATGATC+AGG 0.477139 4_2:-66253999 Msa0616450:CDS
AGATGAAATTGATGGTTTGT+TGG 0.477510 4_2:-66253824 Msa0616450:CDS
CCAAGATTGAAAGAGATTCA+AGG 0.478614 4_2:-66257142 Msa0616450:CDS
CTAATGGCTCTGTGCATAGC+AGG 0.484571 4_2:-66256646 Msa0616450:CDS
TGATGACGATCTTCAATTAG+CGG 0.485492 4_2:-66254130 Msa0616450:CDS
TTACAGTCACAATCATCAAC+AGG 0.485873 4_2:+66256032 None:intergenic
TGGTATTGGTGGGTCCAACC+AGG 0.485971 4_2:-66257221 Msa0616450:CDS
AAGATCTTTACCAGCAATCA+TGG 0.490097 4_2:+66257369 None:intergenic
TTCTTTAACTCGTAATTCAA+CGG 0.493120 4_2:-66256726 Msa0616450:CDS
AAACCGGGACCGAGCTTGAA+AGG 0.493130 4_2:-66255858 Msa0616450:CDS
AGTAATACTTGTAGTTGGAT+TGG 0.496287 4_2:-66255939 Msa0616450:CDS
GGTCCTTTCAAGCTCGGTCC+CGG 0.497493 4_2:+66255855 None:intergenic
TCTGAGTCAAAAGGGTAAAG+AGG 0.498142 4_2:-66257110 Msa0616450:CDS
AAAGTTTGGAGAGCATTGTT+CGG 0.498175 4_2:-66254083 Msa0616450:CDS
AAGAAATTCTGAGAGTTTGA+GGG 0.499273 4_2:-66256438 Msa0616450:CDS
GCAAATCCTGGAAATGGAAC+TGG 0.502590 4_2:-66256590 Msa0616450:CDS
GCAACAATACCATCACCAAT+TGG 0.506827 4_2:+66256617 None:intergenic
TATTCTGGTTGTTTCCAGAA+TGG 0.508722 4_2:-66253675 Msa0616450:three_prime_UTR
TTATAATGACTACTATTACC+TGG 0.509349 4_2:+66256548 None:intergenic
GTCTCAAACCTATGTCTAGC+AGG 0.510746 4_2:+66256482 None:intergenic
TTTGAAGGTTTAGATGGTGG+TGG 0.512388 4_2:-66256413 Msa0616450:CDS
TATGAAGTATGAGTAGTTGA+AGG 0.513074 4_2:+66256833 None:intergenic
ATGAGTCGAGCTATTCTACT+AGG 0.513430 4_2:-66254215 Msa0616450:CDS
AAAGCCATTTGAAAATGAAA+AGG 0.513640 4_2:+66256766 None:intergenic
TCAGTTATCTGAGTTGGTAG+AGG 0.514462 4_2:-66256102 Msa0616450:CDS
GTAAGAGAAAGAGAAACATC+AGG 0.514471 4_2:+66256920 None:intergenic
TAATCTTCAGTTATCTGAGT+TGG 0.514763 4_2:-66256108 Msa0616450:CDS
GAAAGCTTTCTGAGTCAAAA+GGG 0.515440 4_2:-66257118 Msa0616450:CDS
AAGATTACCGTACAAGAAGC+TGG 0.518720 4_2:+66256124 None:intergenic
CAGGACAAAGACTGCACAGA+TGG 0.518929 4_2:-66253980 Msa0616450:CDS
GACTCATTCAGGGGATTCAA+GGG 0.521327 4_2:-66256462 Msa0616450:CDS
GGTTTCCACATAGATAACTC+AGG 0.521637 4_2:+66257164 None:intergenic
ATGTCTTGTGCAAAGGATTG+GGG 0.521792 4_2:-66255750 Msa0616450:CDS
ATCTGATTGCAGGCTTCTGA+AGG 0.522424 4_2:+66255597 None:intergenic
TCCAAGGAGACACTTTCAAA+GGG 0.522668 4_2:-66256194 Msa0616450:CDS
CGTTGATGTCACAACTTCCT+CGG 0.522739 4_2:+66256301 None:intergenic
AGATTTGCTCGGGAAACAAA+GGG 0.525514 4_2:-66256010 Msa0616450:CDS
CTGAGTTACCACCAGAAACC+TGG 0.530099 4_2:+66257203 None:intergenic
TTGGATGGGGCACCGGAATG+TGG 0.530269 4_2:+66254192 None:intergenic
TTCCAAGGAGACACTTTCAA+AGG 0.532886 4_2:-66256195 Msa0616450:CDS
TGAGTAGTTGAAGGCCTGCT+AGG 0.537933 4_2:+66256842 None:intergenic
TCTGAGAATTCAAATCAAGA+TGG 0.538512 4_2:-66257079 Msa0616450:CDS
AATTAGTCAACCTTCAAAGC+AGG 0.538657 4_2:-66256238 Msa0616450:CDS
GAAGCAAGGAGGGCGGCAGA+AGG 0.540304 4_2:-66254018 Msa0616450:CDS
CCAGAAGGTCCTTTCAAGCT+CGG 0.542946 4_2:+66255849 None:intergenic
AGGTTTAAGCCAATTGGTGA+TGG 0.542946 4_2:-66256626 Msa0616450:CDS
TTTGAAGAGAAAACAGAAGC+CGG 0.545580 4_2:+66254321 None:intergenic
CTGTTAGAGTAAAACCTAGC+AGG 0.549424 4_2:-66256856 Msa0616450:CDS
CAGAAGAAGCTCATCAAACC+GGG 0.552003 4_2:-66255873 Msa0616450:CDS
GAGCTGCATTTGAAAACTGA+TGG 0.552123 4_2:-66255654 Msa0616450:CDS
CAAATTTGGAACTGTGGTGA+AGG 0.554406 4_2:-66256671 Msa0616450:CDS
CAATCATGGCCAAGTGAGAG+AGG 0.556764 4_2:+66257383 None:intergenic
GGCAGATGAAGCAAGGAGGG+CGG 0.561217 4_2:-66254025 Msa0616450:CDS
AAGATTTGCTCGGGAAACAA+AGG 0.561700 4_2:-66256011 Msa0616450:CDS
TTTCTGAGAGATTCCGACAT+GGG 0.564131 4_2:-66257244 Msa0616450:CDS
TTACGAGTTAAAGAACAACT+TGG 0.566899 4_2:+66256734 None:intergenic
TGTGACTGTAAGATTTGCTC+GGG 0.566967 4_2:-66256020 Msa0616450:CDS
ATGAATAGATGCGGAAAACA+TGG 0.567045 4_2:-66254352 Msa0616450:intron
CAAGGCAGATGAAGCAAGGA+GGG 0.567736 4_2:-66254028 Msa0616450:CDS
TTCAAAGCAGGCTTGAGAGA+AGG 0.571954 4_2:-66256226 Msa0616450:CDS
GTTAGTTCATTTATGCAACC+AGG 0.577258 4_2:-66256566 Msa0616450:CDS
GCTGGTAAAGATCTTCGTAA+TGG 0.577310 4_2:-66257361 Msa0616450:CDS
GACGATCAAATTTGGAACTG+TGG 0.579357 4_2:-66256677 Msa0616450:CDS
TGGGAAGTGAGGATCGCAAA+GGG 0.580002 4_2:-66255680 Msa0616450:CDS
CCCATCCAAAGAAGACATCA+AGG 0.582862 4_2:-66254178 Msa0616450:CDS
GAGACCAAAGGTTCAGACAC+TGG 0.583046 4_2:-66256960 Msa0616450:CDS
GAAAGGACCTTCTGGTACCA+CGG 0.584387 4_2:-66255841 Msa0616450:CDS
GAAATTGGATGAAATGAAAG+TGG 0.585716 4_2:-66253893 Msa0616450:CDS
GGGTCCAACCAGGTTTCTGG+TGG 0.586519 4_2:-66257211 Msa0616450:CDS
GAGACAGCGTGTCCTTTGGA+AGG 0.588812 4_2:+66254274 None:intergenic
GGACTGTCCAGCTTCTTGTA+CGG 0.589156 4_2:-66256131 Msa0616450:CDS
CTCTCAAGCCAGCCTTCCAA+AGG 0.589453 4_2:-66254286 Msa0616450:CDS
ATAGGTTTGAGACTCATTCA+GGG 0.591379 4_2:-66256472 Msa0616450:CDS
AAGCAAGGAGGGCGGCAGAA+GGG 0.593219 4_2:-66254017 Msa0616450:CDS
CCGACATGGGTGGTATTGGT+GGG 0.593598 4_2:-66257231 Msa0616450:CDS
TTGTGACTGTAAGATTTGCT+CGG 0.596225 4_2:-66256021 Msa0616450:CDS
GAGAAGGTCTGATCTTTCCA+AGG 0.598294 4_2:-66256210 Msa0616450:CDS
GACAATTCAGGAGCTTGCCG+AGG 0.600101 4_2:-66256318 Msa0616450:CDS
TGTCTAGCAGGCAATTCAGA+AGG 0.601429 4_2:+66256494 None:intergenic
ACAATCAAGCTCTTTCAACA+AGG 0.601694 4_2:+66255719 None:intergenic
AGCGAAAATGTTCCAAACCA+AGG 0.602262 4_2:-66254046 Msa0616450:CDS
GATGTGATGTTTGTTCACAT+TGG 0.603032 4_2:-66255917 Msa0616450:CDS
AGAAATTCTGAGAGTTTGAG+GGG 0.603264 4_2:-66256437 Msa0616450:CDS
GAGAATTCAAATCAAGATGG+AGG 0.603346 4_2:-66257076 Msa0616450:CDS
AAACCAAGGCAGATGAAGCA+AGG 0.604039 4_2:-66254032 Msa0616450:CDS
AAGTGAGGATCGCAAAGGGA+AGG 0.605051 4_2:-66255676 Msa0616450:CDS
CTGAGAGATTCCGACATGGG+TGG 0.605479 4_2:-66257241 Msa0616450:CDS
TTAGCGGCTTTACTAAGCAA+AGG 0.606428 4_2:-66254114 Msa0616450:CDS
AATCATGGCCAAGTGAGAGA+GGG 0.606734 4_2:+66257384 None:intergenic
CCCACCAATACCACCCATGT+CGG 0.609710 4_2:+66257231 None:intergenic
TGTGTTCATGTCTTGTGCAA+AGG 0.616913 4_2:-66255757 Msa0616450:CDS
GCGGCTTTACTAAGCAAAGG+TGG 0.624078 4_2:-66254111 Msa0616450:CDS
AATGGTGTTGCTGATTCTGA+TGG 0.626641 4_2:-66257343 Msa0616450:CDS
TGTCTTGTGCAAAGGATTGG+GGG 0.628635 4_2:-66255749 Msa0616450:CDS
TATTGGATGTGAACATGCAT+CGG 0.629214 4_2:-66255802 Msa0616450:CDS
TTAGAATAAGAATGAGACAA+AGG 0.633322 4_2:+66256791 None:intergenic
AAGAGCTTGATTGTGTGAGG+AGG 0.633626 4_2:-66255710 Msa0616450:CDS
ACAATGAAACTGTATTTCCG+TGG 0.634167 4_2:+66255824 None:intergenic
TGTATTTCCGTGGTACCAGA+AGG 0.636444 4_2:+66255834 None:intergenic
GTTTCCACATAGATAACTCA+GGG 0.638114 4_2:+66257165 None:intergenic
TAGGTTTGAGACTCATTCAG+GGG 0.639490 4_2:-66256471 Msa0616450:CDS
TGAAAGAGCTTGATTGTGTG+AGG 0.645254 4_2:-66255713 Msa0616450:CDS
ATTGGATGAAATGAAAGTGG+TGG 0.645371 4_2:-66253890 Msa0616450:CDS
TCTGGATGCCACAAACAGCA+TGG 0.649091 4_2:+66255892 None:intergenic
ATACCGAGGAAACGCAGAGG+AGG 0.654221 4_2:-66253915 Msa0616450:CDS
TATTAGGGATAAGAGACCAA+AGG 0.659782 4_2:-66256972 Msa0616450:CDS
ATGGGAAGTGAGGATCGCAA+AGG 0.660662 4_2:-66255681 Msa0616450:CDS
CCAAGGCAGATGAAGCAAGG+AGG 0.661271 4_2:-66254029 Msa0616450:CDS
TTGACCCTGAGTTATCTATG+TGG 0.661402 4_2:-66257169 Msa0616450:CDS
GTTACCACCAGAAACCTGGT+TGG 0.662098 4_2:+66257207 None:intergenic
TGGTTTGTTGGCGAGAATGG+AGG 0.674598 4_2:-66253812 Msa0616450:CDS
ACTCATTCAGGGGATTCAAG+GGG 0.678667 4_2:-66256461 Msa0616450:CDS
GGAATCTTTCAAAACCAGAG+AGG 0.683101 4_2:-66256385 Msa0616450:CDS
GGAAGTTGTGACATCAACGA+AGG 0.692302 4_2:-66256297 Msa0616450:CDS
ACTCTGTCTGAATGATACCG+AGG 0.693322 4_2:-66253929 Msa0616450:CDS
AATTTGATCGTCTTTACTCG+CGG 0.693340 4_2:+66256688 None:intergenic
GAGCATTGTTCGGATAAAGG+AGG 0.695694 4_2:-66254073 Msa0616450:CDS
ATGATACCGAGGAAACGCAG+AGG 0.740426 4_2:-66253918 Msa0616450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAAAAATATATGAAAAA+AGG + chr4_2:66257295-66257314 None:intergenic 10.0%
!!! GAATTTAAAGTAATTGTTTT+TGG - chr4_2:66256236-66256255 Msa0616450:CDS 15.0%
!!! AATTTATAGATTCAAGATTT+TGG - chr4_2:66257422-66257441 Msa0616450:five_prime_UTR 15.0%
!! TGAATTGTCAATGAAAAAAT+AGG + chr4_2:66254729-66254748 None:intergenic 20.0%
!!! TATTTTTTCATTGACAATTC+AGG - chr4_2:66254728-66254747 Msa0616450:intron 20.0%
!! TGTTAATTGAATTTAGTGTT+TGG - chr4_2:66255772-66255791 Msa0616450:CDS 20.0%
!!! TTTTTTAAGACAAGAAATTC+AGG - chr4_2:66255860-66255879 Msa0616450:CDS 20.0%
!!! TTTTTAAGACAAGAAATTCA+GGG - chr4_2:66255861-66255880 Msa0616450:CDS 20.0%
!! AGCTTCAATATTAAATTTGT+TGG - chr4_2:66256137-66256156 Msa0616450:CDS 20.0%
!! TTGAATATTTATGCCTAATA+TGG - chr4_2:66256303-66256322 Msa0616450:CDS 20.0%
!! TAGATATCAGATATGATTAT+AGG + chr4_2:66256663-66256682 None:intergenic 20.0%
!!! TTTATTTTGTTTTCTTACTC+AGG - chr4_2:66257318-66257337 Msa0616450:CDS 20.0%
!! AATTTATTGAAATTCTGCTT+TGG - chr4_2:66257360-66257379 Msa0616450:CDS 20.0%
! TGAAAGAGAGAGTAATATTA+GGG - chr4_2:66254071-66254090 Msa0616450:CDS 25.0%
! TTAGAATAAGAATGAGACAA+AGG + chr4_2:66254270-66254289 None:intergenic 25.0%
! AAAGCCATTTGAAAATGAAA+AGG + chr4_2:66254295-66254314 None:intergenic 25.0%
! TTCTTTAACTCGTAATTCAA+CGG - chr4_2:66254332-66254351 Msa0616450:CDS 25.0%
! TTATAATGACTACTATTACC+TGG + chr4_2:66254513-66254532 None:intergenic 25.0%
! ATTCAGAAGGAAAAAAAGAA+TGG + chr4_2:66254554-66254573 None:intergenic 25.0%
! GATTGTTAGGGAAATTATTT+GGG - chr4_2:66254695-66254714 Msa0616450:intron 25.0%
! CAATCAAAGTTCAAACAAAT+AGG + chr4_2:66255095-66255114 None:intergenic 25.0%
! GAAATACAGTTTCATTGTAT+TGG - chr4_2:66255239-66255258 Msa0616450:intron 25.0%
!!! ATTTTTATTTCAGCAATGAC+TGG + chr4_2:66255712-66255731 None:intergenic 25.0%
! GAAAAAATCAAACAATGATG+AGG - chr4_2:66255805-66255824 Msa0616450:CDS 25.0%
! TTGTCTTAAAAAAACATTGC+TGG + chr4_2:66255853-66255872 None:intergenic 25.0%
! CAAAAGCAAATCTATTTGAA+TGG - chr4_2:66256012-66256031 Msa0616450:CDS 25.0%
! ATTGTCAATCAAACAAATTG+AGG + chr4_2:66256080-66256099 None:intergenic 25.0%
! TATTTATGCCTAATATGGTA+TGG - chr4_2:66256308-66256327 Msa0616450:CDS 25.0%
! ATTTATGCCTAATATGGTAT+GGG - chr4_2:66256309-66256328 Msa0616450:CDS 25.0%
!! ATTTTTCTGATGAATAGATG+CGG - chr4_2:66256697-66256716 Msa0616450:CDS 25.0%
!! TGTATTGAAGAACTAGATTT+TGG + chr4_2:66256812-66256831 None:intergenic 25.0%
!!! ATTTTTTAGTTCGCTAAAGA+TGG + chr4_2:66256909-66256928 None:intergenic 25.0%
! AAAATGCAAGATGAAATTGA+TGG - chr4_2:66257226-66257245 Msa0616450:CDS 25.0%
! AAATTGAAAATCATCCATTC+TGG + chr4_2:66257400-66257419 None:intergenic 25.0%
! TTTTATGCTATGATTGTGCT+TGG + chr4_2:66253569-66253588 None:intergenic 30.0%
CGTTTGTTTGGATCAAAATT+GGG + chr4_2:66253769-66253788 None:intergenic 30.0%
ACGTTTGTTTGGATCAAAAT+TGG + chr4_2:66253770-66253789 None:intergenic 30.0%
!! AAACAGCATCTTTTTCATCT+GGG + chr4_2:66253795-66253814 None:intergenic 30.0%
!! AAAACAGCATCTTTTTCATC+TGG + chr4_2:66253796-66253815 None:intergenic 30.0%
CTTGAATCTCTTTCAATCTT+GGG + chr4_2:66253918-66253937 None:intergenic 30.0%
TCTGAGAATTCAAATCAAGA+TGG - chr4_2:66253979-66253998 Msa0616450:CDS 30.0%
AAATCAAGATGGAGGAAAAT+GGG - chr4_2:66253990-66254009 Msa0616450:CDS 30.0%
CTGAAAGAGAGAGTAATATT+AGG - chr4_2:66254070-66254089 Msa0616450:CDS 30.0%
! TCAAATGCTTTTCACAACAA+TGG - chr4_2:66254165-66254184 Msa0616450:CDS 30.0%
TATGAAGTATGAGTAGTTGA+AGG + chr4_2:66254228-66254247 None:intergenic 30.0%
! AACGCCTTTTCATTTTCAAA+TGG - chr4_2:66254288-66254307 Msa0616450:CDS 30.0%
TTACGAGTTAAAGAACAACT+TGG + chr4_2:66254327-66254346 None:intergenic 30.0%
! AAGAAATTCTGAGAGTTTGA+GGG - chr4_2:66254620-66254639 Msa0616450:intron 30.0%
GGATTGTTAGGGAAATTATT+TGG - chr4_2:66254694-66254713 Msa0616450:intron 30.0%
!! AAAGGGTACTAAAGTTCAAT+TGG - chr4_2:66254881-66254900 Msa0616450:intron 30.0%
TAATCTTCAGTTATCTGAGT+TGG - chr4_2:66254950-66254969 Msa0616450:intron 30.0%
AGTAATACTTGTAGTTGGAT+TGG - chr4_2:66255119-66255138 Msa0616450:intron 30.0%
AGTTAGTAGGATTGTGAATA+GGG - chr4_2:66255582-66255601 Msa0616450:CDS 30.0%
!! GGACACAAATTTTGATATGA+AGG - chr4_2:66255607-66255626 Msa0616450:CDS 30.0%
!! CACAAATTTTGATATGAAGG+TGG - chr4_2:66255610-66255629 Msa0616450:CDS 30.0%
CAAATAACAGACAATTCAGA+AGG - chr4_2:66255736-66255755 Msa0616450:CDS 30.0%
TTTAGTGTTTGGTTGTTCAA+AGG - chr4_2:66255783-66255802 Msa0616450:CDS 30.0%
AAATCAAACAATGATGAGGA+TGG - chr4_2:66255809-66255828 Msa0616450:CDS 30.0%
AAAACATTGCTGGAAAACTT+TGG + chr4_2:66255843-66255862 None:intergenic 30.0%
!! TGTTGATATTGCTTTTGAAG+TGG - chr4_2:66255901-66255920 Msa0616450:CDS 30.0%
!!! GTTGATATTGCTTTTGAAGT+GGG - chr4_2:66255902-66255921 Msa0616450:CDS 30.0%
AGTGGGATTATAAGCATATT+TGG - chr4_2:66255919-66255938 Msa0616450:CDS 30.0%
! AAAATGTTCACGAGAGATTT+TGG + chr4_2:66255972-66255991 None:intergenic 30.0%
ATATTGAAGCTGAATACTGT+AGG + chr4_2:66256128-66256147 None:intergenic 30.0%
AAATGCAAAATACCATTGCT+AGG + chr4_2:66256367-66256386 None:intergenic 30.0%
! TTGAAATGTGCTTTTCTCTT+TGG - chr4_2:66256477-66256496 Msa0616450:CDS 30.0%
AGTTACATCAACACATTCAA+CGG + chr4_2:66256505-66256524 None:intergenic 30.0%
TCAATAGTTAAAGCTAAAGC+AGG + chr4_2:66256592-66256611 None:intergenic 30.0%
GAAATTGGATGAAATGAAAG+TGG - chr4_2:66257165-66257184 Msa0616450:CDS 30.0%
! AGATGAAATTGATGGTTTGT+TGG - chr4_2:66257234-66257253 Msa0616450:CDS 30.0%
AAGATCTTTACCAGCAATCA+TGG + chr4_2:66253692-66253711 None:intergenic 35.0%
GTTTCCACATAGATAACTCA+GGG + chr4_2:66253896-66253915 None:intergenic 35.0%
CCTTGAATCTCTTTCAATCT+TGG + chr4_2:66253919-66253938 None:intergenic 35.0%
CCAAGATTGAAAGAGATTCA+AGG - chr4_2:66253916-66253935 Msa0616450:CDS 35.0%
TGAAAGCTTTCTGAGTCAAA+AGG - chr4_2:66253939-66253958 Msa0616450:CDS 35.0%
GAAAGCTTTCTGAGTCAAAA+GGG - chr4_2:66253940-66253959 Msa0616450:CDS 35.0%
TCAAAAGGGTAAAGAGGTTA+TGG - chr4_2:66253954-66253973 Msa0616450:CDS 35.0%
GAGAATTCAAATCAAGATGG+AGG - chr4_2:66253982-66254001 Msa0616450:CDS 35.0%
CAAATCAAGATGGAGGAAAA+TGG - chr4_2:66253989-66254008 Msa0616450:CDS 35.0%
TATTAGGGATAAGAGACCAA+AGG - chr4_2:66254086-66254105 Msa0616450:CDS 35.0%
GTAAGAGAAAGAGAAACATC+AGG + chr4_2:66254141-66254160 None:intergenic 35.0%
AATTTGATCGTCTTTACTCG+CGG + chr4_2:66254373-66254392 None:intergenic 35.0%
CGAGTAAAGACGATCAAATT+TGG - chr4_2:66254373-66254392 Msa0616450:intron 35.0%
GTTAGTTCATTTATGCAACC+AGG - chr4_2:66254492-66254511 Msa0616450:intron 35.0%
! ATAGGTTTGAGACTCATTCA+GGG - chr4_2:66254586-66254605 Msa0616450:intron 35.0%
! GAAGAAATTCTGAGAGTTTG+AGG - chr4_2:66254619-66254638 Msa0616450:intron 35.0%
! AGAAATTCTGAGAGTTTGAG+GGG - chr4_2:66254621-66254640 Msa0616450:intron 35.0%
AAAACCAGAGAGGATTGTTA+GGG - chr4_2:66254683-66254702 Msa0616450:intron 35.0%
GTTGACTAATTCGTCTTTCT+TGG + chr4_2:66254811-66254830 None:intergenic 35.0%
AATTAGTCAACCTTCAAAGC+AGG - chr4_2:66254820-66254839 Msa0616450:intron 35.0%
!! TCAATTGGAGATTTTAGTCG+CGG - chr4_2:66254896-66254915 Msa0616450:intron 35.0%
!! ATTTTAGTCGCGGTAAAGAT+GGG - chr4_2:66254906-66254925 Msa0616450:intron 35.0%
! TGGTAGAGGTTTTCTTGTAT+AGG - chr4_2:66254970-66254989 Msa0616450:intron 35.0%
! TAGAGGTTTTCTTGTATAGG+AGG - chr4_2:66254973-66254992 Msa0616450:intron 35.0%
TTACAGTCACAATCATCAAC+AGG + chr4_2:66255029-66255048 None:intergenic 35.0%
! TTGTGACTGTAAGATTTGCT+CGG - chr4_2:66255037-66255056 Msa0616450:intron 35.0%
GTGCAAGTAATACTTGTAGT+TGG - chr4_2:66255114-66255133 Msa0616450:intron 35.0%
GATGTGATGTTTGTTCACAT+TGG - chr4_2:66255141-66255160 Msa0616450:intron 35.0%
ACAATGAAACTGTATTTCCG+TGG + chr4_2:66255237-66255256 None:intergenic 35.0%
TATTGGATGTGAACATGCAT+CGG - chr4_2:66255256-66255275 Msa0616450:intron 35.0%
ACAATCAAGCTCTTTCAACA+AGG + chr4_2:66255342-66255361 None:intergenic 35.0%
AAATTGCATGATCTGATTGC+AGG + chr4_2:66255474-66255493 None:intergenic 35.0%
GAGTTAGTAGGATTGTGAAT+AGG - chr4_2:66255581-66255600 Msa0616450:CDS 35.0%
CATAACACCCATACCATATT+AGG + chr4_2:66256319-66256338 None:intergenic 35.0%
! TGGGTGTTATGTTACAAAGT+TGG - chr4_2:66256328-66256347 Msa0616450:CDS 35.0%
! GCAATGGTATTTTGCATTTG+AGG - chr4_2:66256368-66256387 Msa0616450:CDS 35.0%
!! TGGTATTTTGCATTTGAGGT+AGG - chr4_2:66256372-66256391 Msa0616450:CDS 35.0%
AGATGACACAACAAATCACA+GGG + chr4_2:66256552-66256571 None:intergenic 35.0%
AAGATGACACAACAAATCAC+AGG + chr4_2:66256553-66256572 None:intergenic 35.0%
!! TGTGATTTGTTGTGTCATCT+TGG - chr4_2:66256552-66256571 Msa0616450:CDS 35.0%
!! GTGATTTGTTGTGTCATCTT+GGG - chr4_2:66256553-66256572 Msa0616450:CDS 35.0%
GTTAAAGCTAAAGCAGGAAA+AGG + chr4_2:66256586-66256605 None:intergenic 35.0%
ATGAATAGATGCGGAAAACA+TGG - chr4_2:66256706-66256725 Msa0616450:CDS 35.0%
TTTGAAGAGAAAACAGAAGC+CGG + chr4_2:66256740-66256759 None:intergenic 35.0%
! TGATGACGATCTTCAATTAG+CGG - chr4_2:66256928-66256947 Msa0616450:CDS 35.0%
CAAAGGTGGAATTGAAAGTT+TGG - chr4_2:66256961-66256980 Msa0616450:CDS 35.0%
!! AAAGTTTGGAGAGCATTGTT+CGG - chr4_2:66256975-66256994 Msa0616450:CDS 35.0%
ATTGGATGAAATGAAAGTGG+TGG - chr4_2:66257168-66257187 Msa0616450:CDS 35.0%
GAAATTCTGCTTTGGTATTC+TGG - chr4_2:66257368-66257387 Msa0616450:CDS 35.0%
! TATTCTGGTTGTTTCCAGAA+TGG - chr4_2:66257383-66257402 Msa0616450:exon 35.0%
GCTATGATTGTGCTTGGTTT+CGG + chr4_2:66253563-66253582 None:intergenic 40.0%
GAACGAAGAGAGAGAAACTA+AGG + chr4_2:66253650-66253669 None:intergenic 40.0%
GCTGGTAAAGATCTTCGTAA+TGG - chr4_2:66253697-66253716 Msa0616450:three_prime_UTR 40.0%
!! AATGGTGTTGCTGATTCTGA+TGG - chr4_2:66253715-66253734 Msa0616450:three_prime_UTR 40.0%
! GGGTCTTGATAACTTACTTC+TGG + chr4_2:66253749-66253768 None:intergenic 40.0%
TCATCTGGGTAACGTTTGTT+TGG + chr4_2:66253781-66253800 None:intergenic 40.0%
!! TTTTCTGAGAGATTCCGACA+TGG - chr4_2:66253813-66253832 Msa0616450:CDS 40.0%
! TTTCTGAGAGATTCCGACAT+GGG - chr4_2:66253814-66253833 Msa0616450:CDS 40.0%
TTGACCCTGAGTTATCTATG+TGG - chr4_2:66253889-66253908 Msa0616450:CDS 40.0%
GGTTTCCACATAGATAACTC+AGG + chr4_2:66253897-66253916 None:intergenic 40.0%
TCTGAGTCAAAAGGGTAAAG+AGG - chr4_2:66253948-66253967 Msa0616450:CDS 40.0%
! CTGCTAGGTTTTACTCTAAC+AGG + chr4_2:66254204-66254223 None:intergenic 40.0%
CTGTTAGAGTAAAACCTAGC+AGG - chr4_2:66254202-66254221 Msa0616450:CDS 40.0%
! GACGATCAAATTTGGAACTG+TGG - chr4_2:66254381-66254400 Msa0616450:intron 40.0%
! CAAATTTGGAACTGTGGTGA+AGG - chr4_2:66254387-66254406 Msa0616450:intron 40.0%
!! AACTGTGGTGAAGGTACTAA+TGG - chr4_2:66254396-66254415 Msa0616450:intron 40.0%
CATAGCAGGTTTAAGCCAAT+TGG - chr4_2:66254426-66254445 Msa0616450:intron 40.0%
AGGTTTAAGCCAATTGGTGA+TGG - chr4_2:66254432-66254451 Msa0616450:intron 40.0%
GCAACAATACCATCACCAAT+TGG + chr4_2:66254444-66254463 None:intergenic 40.0%
!! TGGTGATGGTATTGTTGCTT+TGG - chr4_2:66254446-66254465 Msa0616450:intron 40.0%
!! ATTGTTGCTTTGGCAAATCC+TGG - chr4_2:66254456-66254475 Msa0616450:intron 40.0%
! CATAGGTTTGAGACTCATTC+AGG - chr4_2:66254585-66254604 Msa0616450:intron 40.0%
! TAGGTTTGAGACTCATTCAG+GGG - chr4_2:66254587-66254606 Msa0616450:intron 40.0%
!!! AGGGGTTTTGAAGGTTTAGA+TGG - chr4_2:66254639-66254658 Msa0616450:intron 40.0%
!!! GGTTTTGAAGGTTTAGATGG+TGG - chr4_2:66254642-66254661 Msa0616450:intron 40.0%
! TTTGAAGGTTTAGATGGTGG+TGG - chr4_2:66254645-66254664 Msa0616450:intron 40.0%
!! GTTTAGATGGTGGTGGAAAT+AGG - chr4_2:66254652-66254671 Msa0616450:intron 40.0%
GGAATCTTTCAAAACCAGAG+AGG - chr4_2:66254673-66254692 Msa0616450:intron 40.0%
CAAAACCAGAGAGGATTGTT+AGG - chr4_2:66254682-66254701 Msa0616450:intron 40.0%
ATTTCCCTAACAATCCTCTC+TGG + chr4_2:66254690-66254709 None:intergenic 40.0%
TTCCAAGGAGACACTTTCAA+AGG - chr4_2:66254863-66254882 Msa0616450:intron 40.0%
TCCAAGGAGACACTTTCAAA+GGG - chr4_2:66254864-66254883 Msa0616450:intron 40.0%
!! GATTTTAGTCGCGGTAAAGA+TGG - chr4_2:66254905-66254924 Msa0616450:intron 40.0%
AAGATTACCGTACAAGAAGC+TGG + chr4_2:66254937-66254956 None:intergenic 40.0%
!! TCAGTTATCTGAGTTGGTAG+AGG - chr4_2:66254956-66254975 Msa0616450:intron 40.0%
! TGTGACTGTAAGATTTGCTC+GGG - chr4_2:66255038-66255057 Msa0616450:intron 40.0%
! AAGATTTGCTCGGGAAACAA+AGG - chr4_2:66255047-66255066 Msa0616450:intron 40.0%
! AGATTTGCTCGGGAAACAAA+GGG - chr4_2:66255048-66255067 Msa0616450:intron 40.0%
GAACATGCATCGGAAATGTT+TGG - chr4_2:66255266-66255285 Msa0616450:intron 40.0%
TGTGTTCATGTCTTGTGCAA+AGG - chr4_2:66255301-66255320 Msa0616450:intron 40.0%
TCATGTCTTGTGCAAAGGAT+TGG - chr4_2:66255306-66255325 Msa0616450:intron 40.0%
CATGTCTTGTGCAAAGGATT+GGG - chr4_2:66255307-66255326 Msa0616450:intron 40.0%
ATGTCTTGTGCAAAGGATTG+GGG - chr4_2:66255308-66255327 Msa0616450:intron 40.0%
TGAAAGAGCTTGATTGTGTG+AGG - chr4_2:66255345-66255364 Msa0616450:intron 40.0%
! TTGTGTGAGGAGGATTTTCA+TGG - chr4_2:66255358-66255377 Msa0616450:intron 40.0%
! TGTGTGAGGAGGATTTTCAT+GGG - chr4_2:66255359-66255378 Msa0616450:intron 40.0%
GAGCTGCATTTGAAAACTGA+TGG - chr4_2:66255404-66255423 Msa0616450:intron 40.0%
AACTGTAAGTGTCTCGACTA+TGG - chr4_2:66255497-66255516 Msa0616450:intron 40.0%
AGTAGGATTGTGAATAGGGA+AGG - chr4_2:66255586-66255605 Msa0616450:CDS 40.0%
CAAACAATGATGAGGATGGA+TGG - chr4_2:66255813-66255832 Msa0616450:CDS 40.0%
GGAAAACATGGCAAACTTTC+CGG - chr4_2:66256718-66256737 Msa0616450:CDS 40.0%
! GGCTTCTGTTTTCTCTTCAA+AGG - chr4_2:66256739-66256758 Msa0616450:CDS 40.0%
ATGAGTCGAGCTATTCTACT+AGG - chr4_2:66256843-66256862 Msa0616450:CDS 40.0%
TATTCTACTAGGCCACATTC+CGG - chr4_2:66256854-66256873 Msa0616450:CDS 40.0%
CTTGATGTCTTCTTTGGATG+GGG + chr4_2:66256882-66256901 None:intergenic 40.0%
CCTTGATGTCTTCTTTGGAT+GGG + chr4_2:66256883-66256902 None:intergenic 40.0%
TTAGCGGCTTTACTAAGCAA+AGG - chr4_2:66256944-66256963 Msa0616450:CDS 40.0%
AGCGAAAATGTTCCAAACCA+AGG - chr4_2:66257012-66257031 Msa0616450:CDS 40.0%
TCTTTGTCCTGATCATCTTC+TGG + chr4_2:66257069-66257088 None:intergenic 40.0%
AATCATGGCCAAGTGAGAGA+GGG + chr4_2:66253677-66253696 None:intergenic 45.0%
AGATCCAGTGTCTGAACCTT+TGG + chr4_2:66254105-66254124 None:intergenic 45.0%
CAGACACTGGATCTTTCTCT+TGG - chr4_2:66254111-66254130 Msa0616450:CDS 45.0%
GCTTTGGCAAATCCTGGAAA+TGG - chr4_2:66254462-66254481 Msa0616450:intron 45.0%
GCAAATCCTGGAAATGGAAC+TGG - chr4_2:66254468-66254487 Msa0616450:intron 45.0%
CTAACACCAGTTCCATTTCC+AGG + chr4_2:66254477-66254496 None:intergenic 45.0%
TGTCTAGCAGGCAATTCAGA+AGG + chr4_2:66254567-66254586 None:intergenic 45.0%
CTGAATTGCCTGCTAGACAT+AGG - chr4_2:66254568-66254587 Msa0616450:intron 45.0%
GTCTCAAACCTATGTCTAGC+AGG + chr4_2:66254579-66254598 None:intergenic 45.0%
AGACTCATTCAGGGGATTCA+AGG - chr4_2:66254595-66254614 Msa0616450:intron 45.0%
GACTCATTCAGGGGATTCAA+GGG - chr4_2:66254596-66254615 Msa0616450:intron 45.0%
ACTCATTCAGGGGATTCAAG+GGG - chr4_2:66254597-66254616 Msa0616450:intron 45.0%
!! GAGAGTTTGAGGGGTTTTGA+AGG - chr4_2:66254630-66254649 Msa0616450:intron 45.0%
CGTTGATGTCACAACTTCCT+CGG + chr4_2:66254760-66254779 None:intergenic 45.0%
GGAAGTTGTGACATCAACGA+AGG - chr4_2:66254761-66254780 Msa0616450:intron 45.0%
TTCTCTCAAGCCTGCTTTGA+AGG + chr4_2:66254833-66254852 None:intergenic 45.0%
TTCAAAGCAGGCTTGAGAGA+AGG - chr4_2:66254832-66254851 Msa0616450:intron 45.0%
GAGAAGGTCTGATCTTTCCA+AGG - chr4_2:66254848-66254867 Msa0616450:intron 45.0%
!! ACCCTTTGAAAGTGTCTCCT+TGG + chr4_2:66254868-66254887 None:intergenic 45.0%
AACAGGAAGCAAACTCTTGC+AGG + chr4_2:66255012-66255031 None:intergenic 45.0%
CCAGAAGAAGCTCATCAAAC+CGG - chr4_2:66255184-66255203 Msa0616450:intron 45.0%
CAGAAGAAGCTCATCAAACC+GGG - chr4_2:66255185-66255204 Msa0616450:intron 45.0%
TGTATTTCCGTGGTACCAGA+AGG + chr4_2:66255227-66255246 None:intergenic 45.0%
TGTCTTGTGCAAAGGATTGG+GGG - chr4_2:66255309-66255328 Msa0616450:intron 45.0%
AAGAGCTTGATTGTGTGAGG+AGG - chr4_2:66255348-66255367 Msa0616450:intron 45.0%
! GAGGATTTTCATGGGAAGTG+AGG - chr4_2:66255367-66255386 Msa0616450:intron 45.0%
ATCTGATTGCAGGCTTCTGA+AGG + chr4_2:66255464-66255483 None:intergenic 45.0%
CCTACTAACTCAAATGCTGC+AGG + chr4_2:66255572-66255591 None:intergenic 45.0%
! CCTGCAGCATTTGAGTTAGT+AGG - chr4_2:66255569-66255588 Msa0616450:intron 45.0%
ATGACACTGTGTCCTAGCAA+TGG - chr4_2:66256352-66256371 Msa0616450:CDS 45.0%
AACTGCAGCCCTATGAAACA+CGG - chr4_2:66256415-66256434 Msa0616450:CDS 45.0%
AGTGTTTGCATGTGAGTGTC+TGG + chr4_2:66256444-66256463 None:intergenic 45.0%
GTTGTGTCATCTTGGGTAGA+AGG - chr4_2:66256560-66256579 Msa0616450:CDS 45.0%
CCCATCCAAAGAAGACATCA+AGG - chr4_2:66256880-66256899 Msa0616450:CDS 45.0%
GCCTTGATGTCTTCTTTGGA+TGG + chr4_2:66256884-66256903 None:intergenic 45.0%
! GGTAGCCTTGATGTCTTCTT+TGG + chr4_2:66256888-66256907 None:intergenic 45.0%
!! GGAGAGCATTGTTCGGATAA+AGG - chr4_2:66256982-66257001 Msa0616450:CDS 45.0%
! GAGCATTGTTCGGATAAAGG+AGG - chr4_2:66256985-66257004 Msa0616450:CDS 45.0%
TTGCTTCATCTGCCTTGGTT+TGG + chr4_2:66257027-66257046 None:intergenic 45.0%
AAACCAAGGCAGATGAAGCA+AGG - chr4_2:66257026-66257045 Msa0616450:CDS 45.0%
AAGGGTTCCAGAAGATGATC+AGG - chr4_2:66257059-66257078 Msa0616450:CDS 45.0%
ACTCTGTCTGAATGATACCG+AGG - chr4_2:66257129-66257148 Msa0616450:CDS 45.0%
!! TGATGGTTTGTTGGCGAGAA+TGG - chr4_2:66257243-66257262 Msa0616450:CDS 45.0%
GTTCATCTCCCTCTCTCACT+TGG - chr4_2:66253666-66253685 Msa0616450:three_prime_UTR 50.0%
CAATCATGGCCAAGTGAGAG+AGG + chr4_2:66253678-66253697 None:intergenic 50.0%
TCTCACTTGGCCATGATTGC+TGG - chr4_2:66253679-66253698 Msa0616450:three_prime_UTR 50.0%
GATTCCGACATGGGTGGTAT+TGG - chr4_2:66253823-66253842 Msa0616450:CDS 50.0%
GTTACCACCAGAAACCTGGT+TGG + chr4_2:66253854-66253873 None:intergenic 50.0%
CTGAGTTACCACCAGAAACC+TGG + chr4_2:66253858-66253877 None:intergenic 50.0%
!! CAGGTTTCTGGTGGTAACTC+AGG - chr4_2:66253856-66253875 Msa0616450:CDS 50.0%
GAGACCAAAGGTTCAGACAC+TGG - chr4_2:66254098-66254117 Msa0616450:CDS 50.0%
TGAGTAGTTGAAGGCCTGCT+AGG + chr4_2:66254219-66254238 None:intergenic 50.0%
! CTAATGGCTCTGTGCATAGC+AGG - chr4_2:66254412-66254431 Msa0616450:intron 50.0%
GGACTGTCCAGCTTCTTGTA+CGG - chr4_2:66254927-66254946 Msa0616450:intron 50.0%
!! CATTGGTGCCATGCTGTTTG+TGG - chr4_2:66255158-66255177 Msa0616450:intron 50.0%
TCTGGATGCCACAAACAGCA+TGG + chr4_2:66255169-66255188 None:intergenic 50.0%
! CCGGTTTGATGAGCTTCTTC+TGG + chr4_2:66255187-66255206 None:intergenic 50.0%
CCAGAAGGTCCTTTCAAGCT+CGG + chr4_2:66255212-66255231 None:intergenic 50.0%
GAAAGGACCTTCTGGTACCA+CGG - chr4_2:66255217-66255236 Msa0616450:intron 50.0%
ATGGGAAGTGAGGATCGCAA+AGG - chr4_2:66255377-66255396 Msa0616450:intron 50.0%
TGGGAAGTGAGGATCGCAAA+GGG - chr4_2:66255378-66255397 Msa0616450:intron 50.0%
AAGTGAGGATCGCAAAGGGA+AGG - chr4_2:66255382-66255401 Msa0616450:intron 50.0%
! GCATTTGAGGTAGGAAGCGT+TGG - chr4_2:66256381-66256400 Msa0616450:CDS 50.0%
ACTGCAGCCCTATGAAACAC+GGG - chr4_2:66256416-66256435 Msa0616450:CDS 50.0%
TCTGGTGCCCGTGTTTCATA+GGG + chr4_2:66256426-66256445 None:intergenic 50.0%
GCGGCTTTACTAAGCAAAGG+TGG - chr4_2:66256947-66256966 Msa0616450:CDS 50.0%
CAAGGCAGATGAAGCAAGGA+GGG - chr4_2:66257030-66257049 Msa0616450:CDS 50.0%
CAGGACAAAGACTGCACAGA+TGG - chr4_2:66257078-66257097 Msa0616450:CDS 50.0%
ATGATACCGAGGAAACGCAG+AGG - chr4_2:66257140-66257159 Msa0616450:CDS 50.0%
TTTCCTCCTCTGCGTTTCCT+CGG + chr4_2:66257149-66257168 None:intergenic 50.0%
GGAAACGCAGAGGAGGAAAT+TGG - chr4_2:66257150-66257169 Msa0616450:CDS 50.0%
!! TGGTTTGTTGGCGAGAATGG+AGG - chr4_2:66257246-66257265 Msa0616450:CDS 50.0%
TGGAGGCAACAAAGCAGCAT+TGG - chr4_2:66257263-66257282 Msa0616450:CDS 50.0%
GGAGGCAACAAAGCAGCATT+GGG - chr4_2:66257264-66257283 Msa0616450:CDS 50.0%
CTGAGAGATTCCGACATGGG+TGG - chr4_2:66253817-66253836 Msa0616450:CDS 55.0%
! TCCGACATGGGTGGTATTGG+TGG - chr4_2:66253826-66253845 Msa0616450:CDS 55.0%
CCCACCAATACCACCCATGT+CGG + chr4_2:66253830-66253849 None:intergenic 55.0%
!! CCGACATGGGTGGTATTGGT+GGG - chr4_2:66253827-66253846 Msa0616450:CDS 55.0%
!! TGGTATTGGTGGGTCCAACC+AGG - chr4_2:66253837-66253856 Msa0616450:CDS 55.0%
GACAATTCAGGAGCTTGCCG+AGG - chr4_2:66254740-66254759 Msa0616450:intron 55.0%
AAACCGGGACCGAGCTTGAA+AGG - chr4_2:66255200-66255219 Msa0616450:intron 55.0%
CCGAGCTTGAAAGGACCTTC+TGG - chr4_2:66255209-66255228 Msa0616450:intron 55.0%
GTCTGGTGCCCGTGTTTCAT+AGG + chr4_2:66256427-66256446 None:intergenic 55.0%
!! CTTTGGAAGGCTGGCTTGAG+AGG + chr4_2:66256774-66256793 None:intergenic 55.0%
CTCTCAAGCCAGCCTTCCAA+AGG - chr4_2:66256772-66256791 Msa0616450:CDS 55.0%
GAGACAGCGTGTCCTTTGGA+AGG + chr4_2:66256787-66256806 None:intergenic 55.0%
GGAAGAGACAGCGTGTCCTT+TGG + chr4_2:66256791-66256810 None:intergenic 55.0%
GTCTTCTTTGGATGGGGCAC+CGG + chr4_2:66256876-66256895 None:intergenic 55.0%
CCTCCTTGCTTCATCTGCCT+TGG + chr4_2:66257032-66257051 None:intergenic 55.0%
CCAAGGCAGATGAAGCAAGG+AGG - chr4_2:66257029-66257048 Msa0616450:CDS 55.0%
ATACCGAGGAAACGCAGAGG+AGG - chr4_2:66257143-66257162 Msa0616450:CDS 55.0%
GGTGGGTCCAACCAGGTTTC+TGG - chr4_2:66253844-66253863 Msa0616450:CDS 60.0%
! GGGTCCAACCAGGTTTCTGG+TGG - chr4_2:66253847-66253866 Msa0616450:CDS 60.0%
GGTCCTTTCAAGCTCGGTCC+CGG + chr4_2:66255206-66255225 None:intergenic 60.0%
! CAGCGTGTCCTTTGGAAGGC+TGG + chr4_2:66256783-66256802 None:intergenic 60.0%
!! TTGGATGGGGCACCGGAATG+TGG + chr4_2:66256869-66256888 None:intergenic 60.0%
GGCAGATGAAGCAAGGAGGG+CGG - chr4_2:66257033-66257052 Msa0616450:CDS 60.0%
AAGCAAGGAGGGCGGCAGAA+GGG - chr4_2:66257041-66257060 Msa0616450:CDS 60.0%
GAAGCAAGGAGGGCGGCAGA+AGG - chr4_2:66257040-66257059 Msa0616450:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 66253554 66257526 66253554 ID=Msa0616450;Name=Msa0616450
chr4_2 mRNA 66253554 66257526 66253554 ID=Msa0616450-mRNA-1;Parent=Msa0616450;Name=Msa0616450-mRNA-1;_AED=0.00;_eAED=0.00;_QI=137|1|1|1|1|1|2|235|795
chr4_2 exon 66253554 66254366 66253554 ID=Msa0616450-mRNA-1:exon:18842;Parent=Msa0616450-mRNA-1
chr4_2 exon 66255580 66257526 66255580 ID=Msa0616450-mRNA-1:exon:18841;Parent=Msa0616450-mRNA-1
chr4_2 five_prime_UTR 66257390 66257526 66257390 ID=Msa0616450-mRNA-1:five_prime_utr;Parent=Msa0616450-mRNA-1
chr4_2 CDS 66255580 66257389 66255580 ID=Msa0616450-mRNA-1:cds;Parent=Msa0616450-mRNA-1
chr4_2 CDS 66253789 66254366 66253789 ID=Msa0616450-mRNA-1:cds;Parent=Msa0616450-mRNA-1
chr4_2 three_prime_UTR 66253554 66253788 66253554 ID=Msa0616450-mRNA-1:three_prime_utr;Parent=Msa0616450-mRNA-1
Gene Sequence

>Msa0616450

ATGATTGCTGGTAAAGATCTTCGTAATGGTGTTGCTGATTCTGATGGTGAAAACTCCAGAAGTAAGTTATCAAGACCCAATTTTGATCCAAACAAACGTTACCCAGATGAAAAAGATGCTGTTTTTCTGAGAGATTCCGACATGGGTGGTATTGGTGGGTCCAACCAGGTTTCTGGTGGTAACTCAGGTTTTCAAGAATTGACCCTGAGTTATCTATGTGGAAACCCAAGATTGAAAGAGATTCAAGGTGAAAGCTTTCTGAGTCAAAAGGGTAAAGAGGTTATGGTTTCTGAGAATTCAAATCAAGATGGAGGAAAATGGGTTGAAAGAGATTTTCTTAGTTTGAGTGATTCTTCAAAGAGATCTATTGAAGAAGATGCTGAAAGAGAGAGTAATATTAGGGATAAGAGACCAAAGGTTCAGACACTGGATCTTTCTCTTGGTTTACCTGATGTTTCTCTTTCTCTTACTGCTTCAAATGCTTTTCACAACAATGGTGATCATCAACAACCTGTTAGAGTAAAACCTAGCAGGCCTTCAACTACTCATACTTCATATTCAAATGATTATACAGCTCCTTTGTCTCATTCTTATTCTAACGCCTTTTCATTTTCAAATGGCTTTTCACATAATCCAAGTTGTTCTTTAACTCGTAATTCAACGGATAATTTTGATTATTCCGCGAGTAAAGACGATCAAATTTGGAACTGTGGTGAAGGTACTAATGGCTCTGTGCATAGCAGGTTTAAGCCAATTGGTGATGGTATTGTTGCTTTGGCAAATCCTGGAAATGGAACTGGTGTTAGTTCATTTATGCAACCAGGTAATAGTAGTCATTATAAAACGACTAGTTCTGAAAACCATTCTTTTTTTCCTTCTGAATTGCCTGCTAGACATAGGTTTGAGACTCATTCAGGGGATTCAAGGGGAAGAAATTCTGAGAGTTTGAGGGGTTTTGAAGGTTTAGATGGTGGTGGAAATAGGAATCTTTCAAAACCAGAGAGGATTGTTAGGGAAATTATTTGGGAGTCTGTTCCTATTTTTTCATTGACAATTCAGGAGCTTGCCGAGGAAGTTGTGACATCAACGAAGGAGTACTTGAAGAATCTTATTGAGACCAAGAAAGACGAATTAGTCAACCTTCAAAGCAGGCTTGAGAGAAGGTCTGATCTTTCCAAGGAGACACTTTCAAAGGGTACTAAAGTTCAATTGGAGATTTTAGTCGCGGTAAAGATGGGACTGTCCAGCTTCTTGTACGGTAATCTTCAGTTATCTGAGTTGGTAGAGGTTTTCTTGTATAGGAGGTGTAGAAATGTTACCTGCAAGAGTTTGCTTCCTGTTGATGATTGTGACTGTAAGATTTGCTCGGGAAACAAAGGGTTTTGTAGCTCTTGTATGTGTCCTATTTGTTTGAACTTTGATTGTGCAAGTAATACTTGTAGTTGGATTGGATGTGATGTTTGTTCACATTGGTGCCATGCTGTTTGTGGCATCCAGAAGAAGCTCATCAAACCGGGACCGAGCTTGAAAGGACCTTCTGGTACCACGGAAATACAGTTTCATTGTATTGGATGTGAACATGCATCGGAAATGTTTGGATTTGTTAAAGATGTGTTCATGTCTTGTGCAAAGGATTGGGGGATTGAAACCTTGTTGAAAGAGCTTGATTGTGTGAGGAGGATTTTCATGGGAAGTGAGGATCGCAAAGGGAAGGAGCTGCATTTGAAAACTGATGGCTTGCTATTAAAACTTCAAGCTAAAATAGTATCTCCTTCAGAAGCCTGCAATCAGATCATGCAATTTTTCAACTATGCGGAAAACATGGCAAACTTTCCGGCTTCTGTTTTCTCTTCAAAGGAATTGATAGCCTCTCAAGCCAGCCTTCCAAAGGACACGCTGTCTCTTCCAAAATCTAGTTCTTCAATACAGAAATACGCTTATGAGTCGAGCTATTCTACTAGGCCACATTCCGGTGCCCCATCCAAAGAAGACATCAAGGCTACCATCTTTAGCGAACTAAAAAATGATGACGATCTTCAATTAGCGGCTTTACTAAGCAAAGGTGGAATTGAAAGTTTGGAGAGCATTGTTCGGATAAAGGAGGCAGAAGCGAAAATGTTCCAAACCAAGGCAGATGAAGCAAGGAGGGCGGCAGAAGGGTTCCAGAAGATGATCAGGACAAAGACTGCACAGATGGATGAAGAGTATGCGACAAAGCTTTCAAAACTCTGTCTGAATGATACCGAGGAAACGCAGAGGAGGAAATTGGATGAAATGAAAGTGGTGGAAAATTCTTGTGTTGATTACTATAAAATGAAAAAGAAAATGCAAGATGAAATTGATGGTTTGTTGGCGAGAATGGAGGCAACAAAGCAGCATTGGGTTTAA

Protein sequence

>Msa0616450

MIAGKDLRNGVADSDGENSRSKLSRPNFDPNKRYPDEKDAVFLRDSDMGGIGGSNQVSGGNSGFQELTLSYLCGNPRLKEIQGESFLSQKGKEVMVSENSNQDGGKWVERDFLSLSDSSKRSIEEDAERESNIRDKRPKVQTLDLSLGLPDVSLSLTASNAFHNNGDHQQPVRVKPSRPSTTHTSYSNDYTAPLSHSYSNAFSFSNGFSHNPSCSLTRNSTDNFDYSASKDDQIWNCGEGTNGSVHSRFKPIGDGIVALANPGNGTGVSSFMQPGNSSHYKTTSSENHSFFPSELPARHRFETHSGDSRGRNSESLRGFEGLDGGGNRNLSKPERIVREIIWESVPIFSLTIQELAEEVVTSTKEYLKNLIETKKDELVNLQSRLERRSDLSKETLSKGTKVQLEILVAVKMGLSSFLYGNLQLSELVEVFLYRRCRNVTCKSLLPVDDCDCKICSGNKGFCSSCMCPICLNFDCASNTCSWIGCDVCSHWCHAVCGIQKKLIKPGPSLKGPSGTTEIQFHCIGCEHASEMFGFVKDVFMSCAKDWGIETLLKELDCVRRIFMGSEDRKGKELHLKTDGLLLKLQAKIVSPSEACNQIMQFFNYAENMANFPASVFSSKELIASQASLPKDTLSLPKSSSSIQKYAYESSYSTRPHSGAPSKEDIKATIFSELKNDDDLQLAALLSKGGIESLESIVRIKEAEAKMFQTKADEARRAAEGFQKMIRTKTAQMDEEYATKLSKLCLNDTEETQRRKLDEMKVVENSCVDYYKMKKKMQDEIDGLLARMEATKQHWV*