AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0704550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0704550 MtrunA17_Chr8g0382671 97.689 476 10 1 1 476 1 475 0.0 951
Msa0704550 MtrunA17_Chr7g0267911 82.609 483 67 4 1 476 1 473 0.0 799
Msa0704550 MtrunA17_Chr3g0114811 31.026 390 245 10 84 467 72 443 5.87e-51 179
Msa0704550 MtrunA17_Chr3g0114831 30.728 371 235 9 103 467 452 806 1.57e-46 172
Msa0704550 MtrunA17_Chr3g0114831 29.552 335 192 9 103 435 36 328 1.18e-35 140
Msa0704550 MtrunA17_Chr1g0195061 31.593 383 226 11 103 467 30 394 3.58e-42 154
Msa0704550 MtrunA17_Chr4g0004131 29.661 354 220 10 131 476 62 394 8.53e-40 147
Msa0704550 MtrunA17_Chr8g0360241 24.607 382 253 11 102 464 42 407 2.80e-23 101
Msa0704550 MtrunA17_Chr2g0324801 23.181 371 252 12 110 464 22 375 2.34e-17 83.6
Msa0704550 MtrunA17_Chr8g0389311 23.155 393 267 13 98 467 46 426 5.45e-17 83.2
Msa0704550 MtrunA17_Chr8g0389321 23.155 393 267 13 98 467 46 426 5.45e-17 83.2
Msa0704550 MtrunA17_Chr2g0278911 24.615 325 207 12 102 401 72 383 8.71e-17 82.4
Msa0704550 MtrunA17_Chr8g0387481 22.691 379 255 16 122 476 80 444 7.24e-16 79.7
Msa0704550 MtrunA17_Chr6g0475681 21.833 371 260 12 116 467 166 525 4.13e-14 74.7
Msa0704550 MtrunA17_Chr4g0049271 23.385 325 211 10 102 401 91 402 1.65e-12 69.3
Msa0704550 MtrunA17_Chr7g0248681 23.306 369 251 14 116 464 73 429 5.61e-12 67.8
Msa0704550 MtrunA17_Chr4g0054371 20.598 301 210 7 142 415 91 389 1.67e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0704550 AT2G22250.3 72.549 459 115 2 15 470 19 469 0.0 679
Msa0704550 AT2G22250.2 72.549 459 115 2 15 470 19 469 0.0 679
Msa0704550 AT2G22250.1 79.353 402 83 0 69 470 21 422 0.0 674
Msa0704550 AT1G77670.1 29.638 442 280 12 32 467 20 436 8.26e-55 189
Msa0704550 AT1G80360.3 28.775 351 222 9 133 476 64 393 1.82e-36 139
Msa0704550 AT1G80360.2 28.775 351 222 9 133 476 64 393 1.82e-36 139
Msa0704550 AT1G80360.4 28.775 351 222 9 133 476 64 393 1.82e-36 139
Msa0704550 AT1G80360.1 28.775 351 222 9 133 476 64 393 1.82e-36 139
Msa0704550 AT4G28420.2 23.545 378 262 10 101 463 61 426 2.23e-23 102
Msa0704550 AT5G36160.1 21.535 404 289 10 80 465 17 410 1.61e-22 100
Msa0704550 AT2G24850.1 24.190 401 268 13 84 464 33 417 2.46e-22 99.8
Msa0704550 AT2G20610.1 24.011 379 259 10 102 464 68 433 1.48e-21 97.4
Msa0704550 AT5G53970.1 22.310 381 273 9 97 464 30 400 9.76e-20 91.7
Msa0704550 AT4G28420.1 23.988 321 209 11 101 399 61 368 2.02e-19 90.5
Msa0704550 AT2G20610.2 23.647 351 239 10 102 436 68 405 2.02e-17 84.7
Msa0704550 AT4G28410.1 22.622 389 252 13 102 464 70 435 7.43e-17 83.2
Msa0704550 AT4G23600.1 22.067 358 225 13 133 464 73 402 1.01e-15 79.3
Msa0704550 AT4G28410.2 25.287 261 175 8 102 347 70 325 5.14e-15 77.4
Msa0704550 AT2G13810.1 25.000 344 209 13 128 448 103 420 7.09e-15 77.0
Msa0704550 AT3G61510.1 22.126 348 243 12 138 468 94 430 2.48e-14 75.5
Msa0704550 AT1G01480.1 25.581 215 143 5 138 336 95 308 5.69e-14 74.3
Msa0704550 AT1G62960.1 23.565 331 218 12 129 438 202 518 1.06e-13 73.9
Msa0704550 AT4G23600.2 21.683 309 222 10 165 464 1 298 2.22e-13 71.2
Msa0704550 AT4G26200.1 24.186 215 147 5 138 337 102 315 7.05e-13 70.9
Msa0704550 AT4G23600.3 21.212 330 206 13 133 436 73 374 3.55e-11 65.1
Msa0704550 AT4G33680.1 23.313 326 210 10 102 401 93 404 9.27e-11 64.3

Find 159 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTAATATGTTTACGTTTA+TGG 0.059204 4_4:-76985476 Msa0704550:three_prime_UTR
TCGGCCAACCTTGCCATTTC+TGG 0.079416 4_4:+76986985 None:intergenic
CTCCACCCCGGTGCTCATTT+TGG 0.141862 4_4:+76988445 None:intergenic
ATGCAGCAACTCCTGCTTTC+TGG 0.151985 4_4:+76986128 None:intergenic
GCAATTTGTCATAAGCTTAA+AGG 0.163237 4_4:-76987987 Msa0704550:intron
TCATTATTCCAGCTCCATTT+TGG 0.216900 4_4:-76987017 Msa0704550:CDS
CAAGAAGTTTGGGATTTAAA+AGG 0.233222 4_4:+76986920 None:intergenic
AATTCTAATGTTCCAGCATT+AGG 0.242169 4_4:+76988017 None:intergenic
TTGGCCATATCGGATAAATT+TGG 0.270402 4_4:+76988584 None:intergenic
GAGGGAGGGGTTTGGTGGAG+TGG 0.274032 4_4:+76988702 None:intergenic
AACGCAGCAAAATGGATTAT+TGG 0.290437 4_4:+76988653 None:intergenic
ATTCTAATGTTCCAGCATTA+GGG 0.292089 4_4:+76988018 None:intergenic
TATTGAATTTAGTTCACTTC+AGG 0.297595 4_4:-76986166 Msa0704550:intron
ACGTTTATGGTGAAAATAAT+AGG 0.299334 4_4:-76985463 Msa0704550:three_prime_UTR
TCTGGGTAACTGACCCAAAA+TGG 0.303684 4_4:+76987003 None:intergenic
CTTGTTCCAGGGAGTGCATT+TGG 0.321486 4_4:-76985666 Msa0704550:CDS
CTACAGGTAGCACTTGTTCC+AGG 0.326666 4_4:-76985678 Msa0704550:intron
CTATCCAAATTTATCCGATA+TGG 0.328654 4_4:-76988588 Msa0704550:exon
GATCAGATTGTTGTTACTAA+TGG 0.334270 4_4:-76987845 Msa0704550:CDS
GGTTTGGTGGAGTGGAGGAG+TGG 0.334619 4_4:+76988710 None:intergenic
CTCAAAATCCGATTCTGAAT+TGG 0.336223 4_4:-76988390 Msa0704550:CDS
GGAAAAGAAGCTGAGGGATT+TGG 0.338146 4_4:-76985834 Msa0704550:CDS
GTAATTTGTAACAAACAAAA+AGG 0.338271 4_4:+76985362 None:intergenic
GCAAAGCTTGTATGCGTTGC+TGG 0.343335 4_4:+76986635 None:intergenic
GGAGGGGTTTGGTGGAGTGG+AGG 0.347694 4_4:+76988705 None:intergenic
AGCAAAGCACCCCAGGCTTC+TGG 0.348641 4_4:-76986791 Msa0704550:intron
TGTTTCTTTCTTCATAATCC+TGG 0.349879 4_4:-76988629 Msa0704550:five_prime_UTR
TATTCTCTACAGCTGCTTGT+AGG 0.360055 4_4:+76985598 None:intergenic
AGAAACAAAACGCAGCAAAA+TGG 0.361488 4_4:+76988645 None:intergenic
GTAAATTCAATAAATAATAG+AGG 0.367036 4_4:-76985301 Msa0704550:three_prime_UTR
TGGCGGCTTGGATATATTGC+TGG 0.367266 4_4:-76986353 Msa0704550:CDS
ACAGATCCTGTCGGGTTAGA+TGG 0.370302 4_4:+76986853 None:intergenic
TGCAGCAACTCCTGCTTTCT+GGG 0.375768 4_4:+76986129 None:intergenic
CCGGCAGCCAAGCGAATAAC+AGG 0.376297 4_4:+76988269 None:intergenic
TGTCGATATCTGTTGGATAA+AGG 0.377700 4_4:-76985786 Msa0704550:CDS
CGGCCAACCTTGCCATTTCT+GGG 0.386197 4_4:+76986986 None:intergenic
ATAGCGGGGAGAGATTTATC+AGG 0.386339 4_4:+76988521 None:intergenic
ATTGATTTCAGCTCCTATTA+CGG 0.395214 4_4:-76985855 Msa0704550:CDS
GGGATTTAAAAGGAAATTGT+TGG 0.397371 4_4:+76986930 None:intergenic
CAAAAGAGGGAGGGGTTTGG+TGG 0.410407 4_4:+76988697 None:intergenic
GTTTGGTGGAGTGGAGGAGT+GGG 0.410884 4_4:+76988711 None:intergenic
CTGCTGTAATAAAATGCTTC+GGG 0.411183 4_4:+76986330 None:intergenic
TTGGGTCAGTTACCCAGAAA+TGG 0.412108 4_4:-76986998 Msa0704550:CDS
CCTGTTATTCGCTTGGCTGC+CGG 0.414314 4_4:-76988269 Msa0704550:CDS
GGGAAACGTGGAAAGGTTTG+AGG 0.414527 4_4:+76988466 None:intergenic
GAACAAAAGAGGGAGGGGTT+TGG 0.418447 4_4:+76988694 None:intergenic
AAAGCAGGAGTTGCTGCATT+AGG 0.419874 4_4:-76986124 Msa0704550:CDS
ATTGAATTTAGTTCACTTCA+GGG 0.420218 4_4:-76986165 Msa0704550:intron
TGGCGTTCCTGTTATTCGCT+TGG 0.434147 4_4:-76988276 Msa0704550:CDS
ATGCTGGAACATTAGAATTA+CGG 0.438442 4_4:-76988013 Msa0704550:CDS
ACTGCTGTAATAAAATGCTT+CGG 0.441560 4_4:+76986329 None:intergenic
GCAATGACGGGTTGGCGGCT+TGG 0.443014 4_4:-76986365 Msa0704550:CDS
ACCGCGGGTGTATCAAAATC+AGG 0.445970 4_4:+76988242 None:intergenic
ATCAACTTCCAATTCAGAAT+CGG 0.450108 4_4:+76988382 None:intergenic
ACAAGTGCAGCAGAGGTAAG+AGG 0.450109 4_4:+76985558 None:intergenic
CCTTTGCAATGACGGGTTGG+CGG 0.450458 4_4:-76986370 Msa0704550:CDS
ATTCTCTACAGCTGCTTGTA+GGG 0.452436 4_4:+76985599 None:intergenic
GTGGAGTGGAGGAGTGGGTG+CGG 0.453706 4_4:+76988716 None:intergenic
TCAATAAATAATAGAGGGAA+TGG 0.454615 4_4:-76985295 Msa0704550:three_prime_UTR
CCGCAGGCCTTTGCAATGAC+GGG 0.465375 4_4:-76986377 Msa0704550:intron
TAGAGAACGAAGGGATTACT+TGG 0.471008 4_4:-76986053 Msa0704550:CDS
GTGATTGCAGTTTGCTCACC+GGG 0.475286 4_4:-76987797 Msa0704550:CDS
CGAATCAACATACCTGACTT+TGG 0.475879 4_4:+76986297 None:intergenic
ACCGCAGGCCTTTGCAATGA+CGG 0.477256 4_4:-76986378 Msa0704550:intron
CAAAGCTTGTATGCGTTGCT+GGG 0.479964 4_4:+76986636 None:intergenic
TAAGAATGTGTTGGCCATAT+CGG 0.480353 4_4:+76988574 None:intergenic
TTAGTAACAACAATCTGATC+AGG 0.481417 4_4:+76987848 None:intergenic
AGCTGCTTGTAGGGTGGGAA+GGG 0.483431 4_4:+76985608 None:intergenic
AACAGAACTCTAACTGTGAA+TGG 0.487843 4_4:-76986593 Msa0704550:CDS
ATAACTTAAGATCACAAAGT+TGG 0.488001 4_4:-76985399 Msa0704550:three_prime_UTR
TAGGATACACAGATCCTGTC+GGG 0.490141 4_4:+76986845 None:intergenic
GTCTCTCTGTCGATATCTGT+TGG 0.490859 4_4:-76985793 Msa0704550:CDS
GTAATAGCGACAGTTCTTGA+AGG 0.496768 4_4:+76988326 None:intergenic
ATTGAATTTACACTTGATGT+TGG 0.497833 4_4:+76985313 None:intergenic
GCCACTGCTCTTGTTCAAGC+TGG 0.498280 4_4:-76988296 Msa0704550:CDS
CAGCTGCTTGTAGGGTGGGA+AGG 0.499588 4_4:+76985607 None:intergenic
CGTTTCCCAAAATGAGCACC+GGG 0.499708 4_4:-76988451 Msa0704550:CDS
AAGAAGAACAAAAGAGGGAG+GGG 0.500944 4_4:+76988689 None:intergenic
GAGAGATCTGTGGCGAGAAA+CGG 0.503955 4_4:+76988496 None:intergenic
AGTCGGAAAGATCCAAAGTC+AGG 0.515039 4_4:-76986309 Msa0704550:intron
GCTTTCTGGGATATACTACT+AGG 0.517919 4_4:+76986142 None:intergenic
TCTACAGCTGCTTGTAGGGT+GGG 0.517951 4_4:+76985603 None:intergenic
GTATAACTTTACCAGAAGCC+TGG 0.521516 4_4:+76986780 None:intergenic
TGGCGAGAAACGGAAATAGC+GGG 0.522526 4_4:+76988506 None:intergenic
CAAAATGGATTATTGGTAAG+TGG 0.523259 4_4:+76988660 None:intergenic
AGTGATTGCAGTTTGCTCAC+CGG 0.523981 4_4:-76987798 Msa0704550:CDS
TATAACTTTACCAGAAGCCT+GGG 0.526263 4_4:+76986781 None:intergenic
ACGTTTCCCAAAATGAGCAC+CGG 0.529984 4_4:-76988452 Msa0704550:CDS
CTCTACAGCTGCTTGTAGGG+TGG 0.533083 4_4:+76985602 None:intergenic
GGAGTTGCTGCATTAGGACT+AGG 0.535279 4_4:-76986118 Msa0704550:CDS
GTGAGAAGAAGAACAAAAGA+GGG 0.535755 4_4:+76988684 None:intergenic
ACAAGGTATACCCCTAATGC+TGG 0.536420 4_4:-76988029 Msa0704550:CDS
GGAGTGGGTGCGGAGAGAGT+TGG 0.538513 4_4:+76988726 None:intergenic
TGTGAGAAGAAGAACAAAAG+AGG 0.539593 4_4:+76988683 None:intergenic
TTACCCAGAAATGGCAAGGT+TGG 0.540508 4_4:-76986989 Msa0704550:CDS
TAACTGACCCAAAATGGAGC+TGG 0.543528 4_4:+76987009 None:intergenic
ACAATGGAGGACCAAAGAAA+AGG 0.545461 4_4:-76985341 Msa0704550:three_prime_UTR
TGTTAAAATATCTGAACCAC+AGG 0.548557 4_4:-76986005 Msa0704550:intron
CAAGTGCAGCAGAGGTAAGA+GGG 0.549680 4_4:+76985559 None:intergenic
AGAAGAAGAACAAAAGAGGG+AGG 0.554543 4_4:+76988687 None:intergenic
AGGCCTTTGCAATGACGGGT+TGG 0.554930 4_4:-76986373 Msa0704550:CDS
AGATTGTAGCAAAGCACCCC+AGG 0.557592 4_4:-76986798 Msa0704550:CDS
TTGCATCTTTACCGAAAATG+TGG 0.558238 4_4:-76986616 Msa0704550:CDS
ACATTACTCACCTCATCTCC+CGG 0.560555 4_4:+76987779 None:intergenic
GAAGAAGAACAAAAGAGGGA+GGG 0.563723 4_4:+76988688 None:intergenic
AGTAGTATATCCCAGAAAGC+AGG 0.566034 4_4:-76986139 Msa0704550:CDS
GGGATGCCGCATAAGAGATA+CGG 0.568342 4_4:+76985628 None:intergenic
ATTGACGTTGGAAGAATCAC+AGG 0.568374 4_4:+76986955 None:intergenic
ATATCTGTTGGATAAAGGCC+AGG 0.568797 4_4:-76985781 Msa0704550:intron
TCGTCACCAAATGCACTCCC+TGG 0.571993 4_4:+76985660 None:intergenic
AAATTGTTGGATATTGACGT+TGG 0.572136 4_4:+76986943 None:intergenic
CCGCCAACCCGTCATTGCAA+AGG 0.572920 4_4:+76986370 None:intergenic
TGTTCACCATCTAACCCGAC+AGG 0.575722 4_4:-76986859 Msa0704550:CDS
TGTATCAAAATCAGGTTCAC+CGG 0.576041 4_4:+76988250 None:intergenic
TCTGTTCTTCTGCTCCACCC+CGG 0.577261 4_4:+76988433 None:intergenic
TTTGTTACAAATTACAATGG+AGG 0.579142 4_4:-76985354 Msa0704550:three_prime_UTR
TACAGGTAGCACTTGTTCCA+GGG 0.580306 4_4:-76985677 Msa0704550:intron
TAAATTCAATAAATAATAGA+GGG 0.580870 4_4:-76985300 Msa0704550:three_prime_UTR
GCATTAGGACTAGGCTATGC+CGG 0.581439 4_4:-76986109 Msa0704550:CDS
ACTAGGCTATGCCGGTGGGG+AGG 0.582975 4_4:-76986101 Msa0704550:CDS
GTTGTTGTGTAAGAATGTGT+TGG 0.584819 4_4:+76988565 None:intergenic
TTGTTTGTTACAAATTACAA+TGG 0.585069 4_4:-76985357 Msa0704550:three_prime_UTR
AGCTAAGCAGAGTATTACTC+AGG 0.591051 4_4:-76987822 Msa0704550:CDS
AATACCTCGGCAATAACCGC+GGG 0.593217 4_4:+76988227 None:intergenic
TTAGGATACACAGATCCTGT+CGG 0.593757 4_4:+76986844 None:intergenic
AAGAATCACAGGTGTTGCAT+CGG 0.596920 4_4:+76986966 None:intergenic
AGTTTGCTCACCGGGAGATG+AGG 0.598945 4_4:-76987789 Msa0704550:intron
GGTAGAAACAGCCTCCCCAC+CGG 0.605264 4_4:+76986090 None:intergenic
ATATTAAACAAGTGCAGCAG+AGG 0.613245 4_4:+76985551 None:intergenic
GAAAGCGTTTAGAGAACGAA+GGG 0.615579 4_4:-76986062 Msa0704550:CDS
CTATTACGGAAAAGAAGCTG+AGG 0.615986 4_4:-76985841 Msa0704550:CDS
TATTACGGAAAAGAAGCTGA+GGG 0.619913 4_4:-76985840 Msa0704550:CDS
TATGTAACTGAATCTAAACC+AGG 0.621769 4_4:+76988611 None:intergenic
TAGGACTAGGCTATGCCGGT+GGG 0.621853 4_4:-76986105 Msa0704550:CDS
TGGGGAGGCTGTTTCTACCA+TGG 0.623436 4_4:-76986086 Msa0704550:CDS
AAATACCTCGGCAATAACCG+CGG 0.623880 4_4:+76988226 None:intergenic
GGGATTAATGCAATTCGTGA+AGG 0.627742 4_4:-76988056 Msa0704550:CDS
TTCTAATGTTCCAGCATTAG+GGG 0.630270 4_4:+76988019 None:intergenic
TCAGTTACCCAGAAATGGCA+AGG 0.632651 4_4:-76986993 Msa0704550:CDS
TCCCAAAATGAGCACCGGGG+TGG 0.635586 4_4:-76988447 Msa0704550:CDS
TTCTCTAAACGCTTTCACCA+TGG 0.637703 4_4:+76986069 None:intergenic
GTTGGTGAAATTGTATAACT+CGG 0.640826 4_4:+76988744 None:intergenic
TACACCCGCGGTTATTGCCG+AGG 0.640881 4_4:-76988231 Msa0704550:intron
CAGATATCGACAGAGAGACT+CGG 0.642319 4_4:+76985797 None:intergenic
TAGCGGGGAGAGATTTATCA+GGG 0.647814 4_4:+76988522 None:intergenic
GTGGCGAGAAACGGAAATAG+CGG 0.650340 4_4:+76988505 None:intergenic
AGGAGAAAGAGAGAGATCTG+TGG 0.651546 4_4:+76988486 None:intergenic
TTGCATCCGTATCTCTTATG+CGG 0.655090 4_4:-76985634 Msa0704550:CDS
TTAGGACTAGGCTATGCCGG+TGG 0.656689 4_4:-76986106 Msa0704550:CDS
GCCAGCTTGAACAAGAGCAG+TGG 0.668141 4_4:+76988295 None:intergenic
GGTTTGACAGCATTAACACG+TGG 0.682883 4_4:+76988347 None:intergenic
CAATTCGTGAAGGATACACA+AGG 0.683943 4_4:-76988046 Msa0704550:CDS
AGGACTAGGCTATGCCGGTG+GGG 0.684712 4_4:-76986104 Msa0704550:CDS
GGCGAGAAACGGAAATAGCG+GGG 0.690573 4_4:+76988507 None:intergenic
AAAGCTTGTATGCGTTGCTG+GGG 0.690722 4_4:+76986637 None:intergenic
TGAAAGCGTTTAGAGAACGA+AGG 0.691237 4_4:-76986063 Msa0704550:CDS
AGGGAAAGAGATTGTACACG+TGG 0.705011 4_4:+76988541 None:intergenic
ATAACTTTACCAGAAGCCTG+GGG 0.763746 4_4:+76986782 None:intergenic
GTTTCCCAAAATGAGCACCG+GGG 0.831303 4_4:-76988450 Msa0704550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATTATACTATTATTATTT+AGG - chr4_4:76986267-76986286 Msa0704550:intron 10.0%
!! TAAATTCAATAAATAATAGA+GGG - chr4_4:76988715-76988734 Msa0704550:five_prime_UTR 10.0%
!!! TTATTATTTAGGATAAACAT+CGG - chr4_4:76986278-76986297 Msa0704550:intron 15.0%
!!! TACTTACTTAATAACATTTT+TGG + chr4_4:76986446-76986465 None:intergenic 15.0%
!! TAAAATGAGTAAAAGATATA+AGG + chr4_4:76986696-76986715 None:intergenic 15.0%
!!! ATTTTTTATACGAATATTTC+AGG - chr4_4:76986975-76986994 Msa0704550:CDS 15.0%
!! GTAAATTCAATAAATAATAG+AGG - chr4_4:76988714-76988733 Msa0704550:five_prime_UTR 15.0%
!! AATTCAAATTGAAAATACCT+CGG + chr4_4:76985804-76985823 None:intergenic 20.0%
!! AATAAACTAGAAACAACTTA+TGG + chr4_4:76985894-76985913 None:intergenic 20.0%
!!! TTAGTTTTATTACTTGTGTA+TGG - chr4_4:76985925-76985944 Msa0704550:intron 20.0%
!!! CTGTATTATATGGTTTTATT+TGG - chr4_4:76986065-76986084 Msa0704550:CDS 20.0%
!!! ACTTAATAACATTTTTGGAT+GGG + chr4_4:76986441-76986460 None:intergenic 20.0%
!!! TACTTAATAACATTTTTGGA+TGG + chr4_4:76986442-76986461 None:intergenic 20.0%
!!! AAGGATTTTACAAAAATGAA+AGG + chr4_4:76986677-76986696 None:intergenic 20.0%
!! TTACAGAATTATGTTTGATT+TGG - chr4_4:76986905-76986924 Msa0704550:CDS 20.0%
!!! ATCTCTTCAAGTAAATTTTT+AGG + chr4_4:76987192-76987211 None:intergenic 20.0%
!!! TAAAACAGTTTAAAATCATC+AGG + chr4_4:76987618-76987637 None:intergenic 20.0%
!! AGAATAACTATTAAAGGAAT+AGG + chr4_4:76988059-76988078 None:intergenic 20.0%
!!! TCATGTGTGTATTTTATTTT+TGG - chr4_4:76988507-76988526 Msa0704550:CDS 20.0%
!!! CATGTGTGTATTTTATTTTT+GGG - chr4_4:76988508-76988527 Msa0704550:CDS 20.0%
!!! GTAATTTGTAACAAACAAAA+AGG + chr4_4:76988656-76988675 None:intergenic 20.0%
!!! TTGTTTGTTACAAATTACAA+TGG - chr4_4:76988658-76988677 Msa0704550:five_prime_UTR 20.0%
! TTTGATTGTGCTGTATTATA+TGG - chr4_4:76986055-76986074 Msa0704550:CDS 25.0%
! TGGATTAATTATATGAGATG+TGG - chr4_4:76986085-76986104 Msa0704550:CDS 25.0%
!! TTTTGTCATAATGAAAACCT+AGG - chr4_4:76986512-76986531 Msa0704550:intron 25.0%
!!! TACATTTTACGTTTTTTGAG+AGG - chr4_4:76986838-76986857 Msa0704550:CDS 25.0%
!! TCTTGACTTTTCAGTAATTT+TGG + chr4_4:76987124-76987143 None:intergenic 25.0%
! ACAACTATTAAGATCTTAAG+AGG + chr4_4:76987312-76987331 None:intergenic 25.0%
! ATGTTCTCTTTCTATCATAA+TGG - chr4_4:76987470-76987489 Msa0704550:intron 25.0%
! TGTAGATTATGAAATAAGCA+TGG - chr4_4:76987574-76987593 Msa0704550:intron 25.0%
! AAAATCATCAGGATAAAATC+TGG + chr4_4:76987607-76987626 None:intergenic 25.0%
! TCAAGATAATGCATAGAATA+AGG + chr4_4:76987757-76987776 None:intergenic 25.0%
!! TATTGAATTTAGTTCACTTC+AGG - chr4_4:76987849-76987868 Msa0704550:CDS 25.0%
!! ATTGAATTTAGTTCACTTCA+GGG - chr4_4:76987850-76987869 Msa0704550:CDS 25.0%
!!! AAAAGTTTTAGCGAAATTGA+TGG - chr4_4:76987987-76988006 Msa0704550:intron 25.0%
! ACATGGAGAATAACTATTAA+AGG + chr4_4:76988065-76988084 None:intergenic 25.0%
! GTGTAATATGTTTACGTTTA+TGG - chr4_4:76988539-76988558 Msa0704550:CDS 25.0%
! ACGTTTATGGTGAAAATAAT+AGG - chr4_4:76988552-76988571 Msa0704550:CDS 25.0%
! ATAACTTAAGATCACAAAGT+TGG - chr4_4:76988616-76988635 Msa0704550:five_prime_UTR 25.0%
! TTTGTAACAAACAAAAAGGA+GGG + chr4_4:76988652-76988671 None:intergenic 25.0%
! ATTTGTAACAAACAAAAAGG+AGG + chr4_4:76988653-76988672 None:intergenic 25.0%
! TTTGTTACAAATTACAATGG+AGG - chr4_4:76988661-76988680 Msa0704550:five_prime_UTR 25.0%
! ATTGAATTTACACTTGATGT+TGG + chr4_4:76988705-76988724 None:intergenic 25.0%
! TCAATAAATAATAGAGGGAA+TGG - chr4_4:76988720-76988739 Msa0704550:five_prime_UTR 25.0%
! GTTGGTGAAATTGTATAACT+CGG + chr4_4:76985274-76985293 None:intergenic 30.0%
!! CAAAATGGATTATTGGTAAG+TGG + chr4_4:76985358-76985377 None:intergenic 30.0%
TGTTTCTTTCTTCATAATCC+TGG - chr4_4:76985386-76985405 Msa0704550:three_prime_UTR 30.0%
TATGTAACTGAATCTAAACC+AGG + chr4_4:76985407-76985426 None:intergenic 30.0%
CTATCCAAATTTATCCGATA+TGG - chr4_4:76985427-76985446 Msa0704550:three_prime_UTR 30.0%
ATCAACTTCCAATTCAGAAT+CGG + chr4_4:76985636-76985655 None:intergenic 30.0%
ACTTATGGACATGTTATAAG+TGG + chr4_4:76985879-76985898 None:intergenic 30.0%
!! GTTTCTAGTTTATTCGAACA+TGG - chr4_4:76985900-76985919 Msa0704550:intron 30.0%
! TTACTTGTGTATGGTAATGT+AGG - chr4_4:76985934-76985953 Msa0704550:intron 30.0%
ATTCTAATGTTCCAGCATTA+GGG + chr4_4:76986000-76986019 None:intergenic 30.0%
AATTCTAATGTTCCAGCATT+AGG + chr4_4:76986001-76986020 None:intergenic 30.0%
ATGCTGGAACATTAGAATTA+CGG - chr4_4:76986002-76986021 Msa0704550:intron 30.0%
GCAATTTGTCATAAGCTTAA+AGG - chr4_4:76986028-76986047 Msa0704550:CDS 30.0%
! TTTTGACAATGTGTCGTAAT+TGG - chr4_4:76986109-76986128 Msa0704550:CDS 30.0%
TTAGTAACAACAATCTGATC+AGG + chr4_4:76986170-76986189 None:intergenic 30.0%
! GATCAGATTGTTGTTACTAA+TGG - chr4_4:76986170-76986189 Msa0704550:intron 30.0%
TCGGTATTTATGCATTGAAT+TGG - chr4_4:76986382-76986401 Msa0704550:intron 30.0%
TTTATGCATTGAATTGGCAT+TGG - chr4_4:76986388-76986407 Msa0704550:intron 30.0%
TTATGCATTGAATTGGCATT+GGG - chr4_4:76986389-76986408 Msa0704550:intron 30.0%
! AATGCATCAAAGATTTTCCT+AGG + chr4_4:76986532-76986551 None:intergenic 30.0%
GTTTGTATTCAATGAGCAAA+AGG + chr4_4:76986753-76986772 None:intergenic 30.0%
AAATTGTTGGATATTGACGT+TGG + chr4_4:76987075-76987094 None:intergenic 30.0%
GGGATTTAAAAGGAAATTGT+TGG + chr4_4:76987088-76987107 None:intergenic 30.0%
! CAAGAAGTTTGGGATTTAAA+AGG + chr4_4:76987098-76987117 None:intergenic 30.0%
! ATTTTGGACTCAAGAAGTTT+GGG + chr4_4:76987108-76987127 None:intergenic 30.0%
! AATTTTGGACTCAAGAAGTT+TGG + chr4_4:76987109-76987128 None:intergenic 30.0%
!! TCTTAATAGTTGTTTTGTGC+AGG - chr4_4:76987319-76987338 Msa0704550:intron 30.0%
!! AACTGTGAATGGATTTTCTA+AGG - chr4_4:76987433-76987452 Msa0704550:intron 30.0%
TTTCTATCATAATGGTATCG+AGG - chr4_4:76987478-76987497 Msa0704550:intron 30.0%
! TTCTATCATAATGGTATCGA+GGG - chr4_4:76987479-76987498 Msa0704550:intron 30.0%
GATTATGAAATAAGCATGGA+TGG - chr4_4:76987578-76987597 Msa0704550:intron 30.0%
! ATTTTAAACTGTTTTACCGC+AGG - chr4_4:76987622-76987641 Msa0704550:intron 30.0%
ACTGCTGTAATAAAATGCTT+CGG + chr4_4:76987689-76987708 None:intergenic 30.0%
! AAGCATTTTATTACAGCAGT+CGG - chr4_4:76987689-76987708 Msa0704550:intron 30.0%
! ACTTGATTTCTGTTTGAGTT+GGG - chr4_4:76987776-76987795 Msa0704550:intron 30.0%
TGTTAAAATATCTGAACCAC+AGG - chr4_4:76988010-76988029 Msa0704550:CDS 30.0%
! TATACTTTCTTTTCTCTTGC+AGG - chr4_4:76988120-76988139 Msa0704550:intron 30.0%
! ATACTTTCTTTTCTCTTGCA+GGG - chr4_4:76988121-76988140 Msa0704550:intron 30.0%
! ATTGATTTCAGCTCCTATTA+CGG - chr4_4:76988160-76988179 Msa0704550:intron 30.0%
TAAAATACTGCTAGTATACC+TGG + chr4_4:76988255-76988274 None:intergenic 30.0%
! TAACATTGTGTTTTGTCTAC+AGG - chr4_4:76988321-76988340 Msa0704550:CDS 30.0%
TTGTAACAAACAAAAAGGAG+GGG + chr4_4:76988651-76988670 None:intergenic 30.0%
GTGAGAAGAAGAACAAAAGA+GGG + chr4_4:76985334-76985353 None:intergenic 35.0%
TGTGAGAAGAAGAACAAAAG+AGG + chr4_4:76985335-76985354 None:intergenic 35.0%
!! AACGCAGCAAAATGGATTAT+TGG + chr4_4:76985365-76985384 None:intergenic 35.0%
AGAAACAAAACGCAGCAAAA+TGG + chr4_4:76985373-76985392 None:intergenic 35.0%
TTGGCCATATCGGATAAATT+TGG + chr4_4:76985434-76985453 None:intergenic 35.0%
! TAAGAATGTGTTGGCCATAT+CGG + chr4_4:76985444-76985463 None:intergenic 35.0%
GTTGTTGTGTAAGAATGTGT+TGG + chr4_4:76985453-76985472 None:intergenic 35.0%
CTCAAAATCCGATTCTGAAT+TGG - chr4_4:76985625-76985644 Msa0704550:CDS 35.0%
TGTATCAAAATCAGGTTCAC+CGG + chr4_4:76985768-76985787 None:intergenic 35.0%
TTCTAATGTTCCAGCATTAG+GGG + chr4_4:76985999-76986018 None:intergenic 35.0%
!! GTAATTGGTTGATTTTGCAG+AGG - chr4_4:76986124-76986143 Msa0704550:CDS 35.0%
! TTAAACATGTGGTGATGTCA+TGG + chr4_4:76986341-76986360 None:intergenic 35.0%
!! AACCCTACGATTTGTTGATT+CGG - chr4_4:76986363-76986382 Msa0704550:CDS 35.0%
TACCGAATCAACAAATCGTA+GGG + chr4_4:76986368-76986387 None:intergenic 35.0%
ATACCGAATCAACAAATCGT+AGG + chr4_4:76986369-76986388 None:intergenic 35.0%
GCTAATAGCCTAATCATCTA+TGG + chr4_4:76986592-76986611 None:intergenic 35.0%
TTCTGAATTCTGATGCCATT+TGG - chr4_4:76986795-76986814 Msa0704550:CDS 35.0%
! AATTCTGATGCCATTTGGTT+TGG - chr4_4:76986800-76986819 Msa0704550:CDS 35.0%
TAGTCCAAAACCAAACCAAA+TGG + chr4_4:76986813-76986832 None:intergenic 35.0%
! TCATTATTCCAGCTCCATTT+TGG - chr4_4:76986998-76987017 Msa0704550:CDS 35.0%
! CATTATTCCAGCTCCATTTT+GGG - chr4_4:76986999-76987018 Msa0704550:CDS 35.0%
TATAACTTTACCAGAAGCCT+GGG + chr4_4:76987237-76987256 None:intergenic 35.0%
TTGCATCTTTACCGAAAATG+TGG - chr4_4:76987399-76987418 Msa0704550:intron 35.0%
! AGAGTTCTGTTCCACATTTT+CGG + chr4_4:76987413-76987432 None:intergenic 35.0%
AACAGAACTCTAACTGTGAA+TGG - chr4_4:76987422-76987441 Msa0704550:intron 35.0%
CTATGCTGCATTTCACAATA+TGG - chr4_4:76987550-76987569 Msa0704550:intron 35.0%
ATCATCAGGATAAAATCTGG+AGG + chr4_4:76987604-76987623 None:intergenic 35.0%
CTGCTGTAATAAAATGCTTC+GGG + chr4_4:76987688-76987707 None:intergenic 35.0%
TAGAATAAGGCTGACAAATG+TGG + chr4_4:76987744-76987763 None:intergenic 35.0%
GACTTGATTTCTGTTTGAGT+TGG - chr4_4:76987775-76987794 Msa0704550:intron 35.0%
ATAAAACACGTCAGCTACTA+AGG + chr4_4:76987832-76987851 None:intergenic 35.0%
AAAGGAATAGGCAGATAAAC+TGG + chr4_4:76988047-76988066 None:intergenic 35.0%
GACAGAAAAGTGACAAAACA+TGG + chr4_4:76988082-76988101 None:intergenic 35.0%
TATTACGGAAAAGAAGCTGA+GGG - chr4_4:76988175-76988194 Msa0704550:intron 35.0%
TGTCGATATCTGTTGGATAA+AGG - chr4_4:76988229-76988248 Msa0704550:intron 35.0%
TGACCTTCAATATGAAGTGT+TGG - chr4_4:76988284-76988303 Msa0704550:CDS 35.0%
ATATTAAACAAGTGCAGCAG+AGG + chr4_4:76988467-76988486 None:intergenic 35.0%
ACAAAAAGGAGGGGAAAAAA+TGG + chr4_4:76988642-76988661 None:intergenic 35.0%
! TGTTGGTATCACCTTTTCTT+TGG + chr4_4:76988688-76988707 None:intergenic 35.0%
AAGAAGAACAAAAGAGGGAG+GGG + chr4_4:76985329-76985348 None:intergenic 40.0%
GAAGAAGAACAAAAGAGGGA+GGG + chr4_4:76985330-76985349 None:intergenic 40.0%
AGAAGAAGAACAAAAGAGGG+AGG + chr4_4:76985331-76985350 None:intergenic 40.0%
!! TCATTTTGGGAAACGTGGAA+AGG + chr4_4:76985559-76985578 None:intergenic 40.0%
GTAATAGCGACAGTTCTTGA+AGG + chr4_4:76985692-76985711 None:intergenic 40.0%
! TTGTGTATGGTAATGTAGGC+TGG - chr4_4:76985938-76985957 Msa0704550:intron 40.0%
! TGTGTATGGTAATGTAGGCT+GGG - chr4_4:76985939-76985958 Msa0704550:intron 40.0%
GGGATTAATGCAATTCGTGA+AGG - chr4_4:76985959-76985978 Msa0704550:intron 40.0%
CAATTCGTGAAGGATACACA+AGG - chr4_4:76985969-76985988 Msa0704550:intron 40.0%
!! GTTGATTTTGCAGAGGAGAA+TGG - chr4_4:76986131-76986150 Msa0704550:CDS 40.0%
! AGCTAAGCAGAGTATTACTC+AGG - chr4_4:76986193-76986212 Msa0704550:intron 40.0%
ATAACTACTTAGCGCGTGTT+TGG - chr4_4:76986302-76986321 Msa0704550:intron 40.0%
!! TAACATTTTTGGATGGGCGT+TGG + chr4_4:76986435-76986454 None:intergenic 40.0%
GTGATAACTGTTCTATCCTC+TGG - chr4_4:76986563-76986582 Msa0704550:intron 40.0%
TAATCATCTATGGCATCCAG+AGG + chr4_4:76986582-76986601 None:intergenic 40.0%
TCTGGATGCCATAGATGATT+AGG - chr4_4:76986581-76986600 Msa0704550:intron 40.0%
ATCAGAATTCAGAACAGTGC+AGG + chr4_4:76986789-76986808 None:intergenic 40.0%
!!! GATGCCATTTGGTTTGGTTT+TGG - chr4_4:76986806-76986825 Msa0704550:CDS 40.0%
! AAGAATCACAGGTGTTGCAT+CGG + chr4_4:76987052-76987071 None:intergenic 40.0%
ATTGACGTTGGAAGAATCAC+AGG + chr4_4:76987063-76987082 None:intergenic 40.0%
TTAGGATACACAGATCCTGT+CGG + chr4_4:76987174-76987193 None:intergenic 40.0%
ATAACTTTACCAGAAGCCTG+GGG + chr4_4:76987236-76987255 None:intergenic 40.0%
GTATAACTTTACCAGAAGCC+TGG + chr4_4:76987238-76987257 None:intergenic 40.0%
!! CAGCATAGCTTTGAAGAGAA+AGG + chr4_4:76987538-76987557 None:intergenic 40.0%
CGAATCAACATACCTGACTT+TGG + chr4_4:76987721-76987740 None:intergenic 40.0%
!! GCTTTCTGGGATATACTACT+AGG + chr4_4:76987876-76987895 None:intergenic 40.0%
AGTAGTATATCCCAGAAAGC+AGG - chr4_4:76987876-76987895 Msa0704550:intron 40.0%
TTCTCTAAACGCTTTCACCA+TGG + chr4_4:76987949-76987968 None:intergenic 40.0%
!! TGAAAGCGTTTAGAGAACGA+AGG - chr4_4:76987952-76987971 Msa0704550:intron 40.0%
!! GAAAGCGTTTAGAGAACGAA+GGG - chr4_4:76987953-76987972 Msa0704550:intron 40.0%
TAGAGAACGAAGGGATTACT+TGG - chr4_4:76987962-76987981 Msa0704550:intron 40.0%
! CTCAGCTTCTTTTCCGTAAT+AGG + chr4_4:76988176-76988195 None:intergenic 40.0%
CTATTACGGAAAAGAAGCTG+AGG - chr4_4:76988174-76988193 Msa0704550:intron 40.0%
ATATCTGTTGGATAAAGGCC+AGG - chr4_4:76988234-76988253 Msa0704550:CDS 40.0%
GCACCAACACTTCATATTGA+AGG + chr4_4:76988290-76988309 None:intergenic 40.0%
TTGCATCCGTATCTCTTATG+CGG - chr4_4:76988381-76988400 Msa0704550:CDS 40.0%
ATTCTCTACAGCTGCTTGTA+GGG + chr4_4:76988419-76988438 None:intergenic 40.0%
TATTCTCTACAGCTGCTTGT+AGG + chr4_4:76988420-76988439 None:intergenic 40.0%
ACAATGGAGGACCAAAGAAA+AGG - chr4_4:76988674-76988693 Msa0704550:five_prime_UTR 40.0%
AGGGAAAGAGATTGTACACG+TGG + chr4_4:76985477-76985496 None:intergenic 45.0%
TAGCGGGGAGAGATTTATCA+GGG + chr4_4:76985496-76985515 None:intergenic 45.0%
! ATAGCGGGGAGAGATTTATC+AGG + chr4_4:76985497-76985516 None:intergenic 45.0%
AGGAGAAAGAGAGAGATCTG+TGG + chr4_4:76985532-76985551 None:intergenic 45.0%
ACGTTTCCCAAAATGAGCAC+CGG - chr4_4:76985563-76985582 Msa0704550:CDS 45.0%
GGTTTGACAGCATTAACACG+TGG + chr4_4:76985671-76985690 None:intergenic 45.0%
!! ACCTGATTTTGATACACCCG+CGG - chr4_4:76985772-76985791 Msa0704550:intron 45.0%
AAATACCTCGGCAATAACCG+CGG + chr4_4:76985792-76985811 None:intergenic 45.0%
ACAAGGTATACCCCTAATGC+TGG - chr4_4:76985986-76986005 Msa0704550:intron 45.0%
! AGTGATTGCAGTTTGCTCAC+CGG - chr4_4:76986217-76986236 Msa0704550:intron 45.0%
ACATTACTCACCTCATCTCC+CGG + chr4_4:76986239-76986258 None:intergenic 45.0%
CGTAGGGTTGCTTAAACATG+TGG + chr4_4:76986352-76986371 None:intergenic 45.0%
TAACTGACCCAAAATGGAGC+TGG + chr4_4:76987009-76987028 None:intergenic 45.0%
TCTGGGTAACTGACCCAAAA+TGG + chr4_4:76987015-76987034 None:intergenic 45.0%
TTGGGTCAGTTACCCAGAAA+TGG - chr4_4:76987017-76987036 Msa0704550:CDS 45.0%
TCAGTTACCCAGAAATGGCA+AGG - chr4_4:76987022-76987041 Msa0704550:intron 45.0%
TTACCCAGAAATGGCAAGGT+TGG - chr4_4:76987026-76987045 Msa0704550:intron 45.0%
TAGGATACACAGATCCTGTC+GGG + chr4_4:76987173-76987192 None:intergenic 45.0%
AAAGCTTGTATGCGTTGCTG+GGG + chr4_4:76987381-76987400 None:intergenic 45.0%
CAAAGCTTGTATGCGTTGCT+GGG + chr4_4:76987382-76987401 None:intergenic 45.0%
AGTCGGAAAGATCCAAAGTC+AGG - chr4_4:76987706-76987725 Msa0704550:intron 45.0%
!! CTGTTTGAGTTGGGATACTG+TGG - chr4_4:76987785-76987804 Msa0704550:intron 45.0%
AAAGCAGGAGTTGCTGCATT+AGG - chr4_4:76987891-76987910 Msa0704550:intron 45.0%
ACTGGATGAATTTGCACCTG+TGG + chr4_4:76988029-76988048 None:intergenic 45.0%
GGAAAAGAAGCTGAGGGATT+TGG - chr4_4:76988181-76988200 Msa0704550:intron 45.0%
CAGATATCGACAGAGAGACT+CGG + chr4_4:76988221-76988240 None:intergenic 45.0%
GTCTCTCTGTCGATATCTGT+TGG - chr4_4:76988222-76988241 Msa0704550:intron 45.0%
TACAGGTAGCACTTGTTCCA+GGG - chr4_4:76988338-76988357 Msa0704550:CDS 45.0%
GAACAAAAGAGGGAGGGGTT+TGG + chr4_4:76985324-76985343 None:intergenic 50.0%
TGGCGAGAAACGGAAATAGC+GGG + chr4_4:76985512-76985531 None:intergenic 50.0%
GTGGCGAGAAACGGAAATAG+CGG + chr4_4:76985513-76985532 None:intergenic 50.0%
GAGAGATCTGTGGCGAGAAA+CGG + chr4_4:76985522-76985541 None:intergenic 50.0%
GGGAAACGTGGAAAGGTTTG+AGG + chr4_4:76985552-76985571 None:intergenic 50.0%
!! GGTGCTCATTTTGGGAAACG+TGG + chr4_4:76985564-76985583 None:intergenic 50.0%
CGTTTCCCAAAATGAGCACC+GGG - chr4_4:76985564-76985583 Msa0704550:CDS 50.0%
! GTTTCCCAAAATGAGCACCG+GGG - chr4_4:76985565-76985584 Msa0704550:CDS 50.0%
TGGCGTTCCTGTTATTCGCT+TGG - chr4_4:76985739-76985758 Msa0704550:intron 50.0%
ACCGCGGGTGTATCAAAATC+AGG + chr4_4:76985776-76985795 None:intergenic 50.0%
AATACCTCGGCAATAACCGC+GGG + chr4_4:76985791-76985810 None:intergenic 50.0%
! GTGATTGCAGTTTGCTCACC+GGG - chr4_4:76986218-76986237 Msa0704550:intron 50.0%
TGTTCACCATCTAACCCGAC+AGG - chr4_4:76987156-76987175 Msa0704550:intron 50.0%
! ACAGATCCTGTCGGGTTAGA+TGG + chr4_4:76987165-76987184 None:intergenic 50.0%
! AGATTGTAGCAAAGCACCCC+AGG - chr4_4:76987217-76987236 Msa0704550:intron 50.0%
GCAAAGCTTGTATGCGTTGC+TGG + chr4_4:76987383-76987402 None:intergenic 50.0%
! TGGCGGCTTGGATATATTGC+TGG - chr4_4:76987662-76987681 Msa0704550:intron 50.0%
TGCAGCAACTCCTGCTTTCT+GGG + chr4_4:76987889-76987908 None:intergenic 50.0%
ATGCAGCAACTCCTGCTTTC+TGG + chr4_4:76987890-76987909 None:intergenic 50.0%
GGAGTTGCTGCATTAGGACT+AGG - chr4_4:76987897-76987916 Msa0704550:intron 50.0%
GCATTAGGACTAGGCTATGC+CGG - chr4_4:76987906-76987925 Msa0704550:intron 50.0%
CTACAGGTAGCACTTGTTCC+AGG - chr4_4:76988337-76988356 Msa0704550:CDS 50.0%
! CTTGTTCCAGGGAGTGCATT+TGG - chr4_4:76988349-76988368 Msa0704550:CDS 50.0%
GGGATGCCGCATAAGAGATA+CGG + chr4_4:76988390-76988409 None:intergenic 50.0%
TCTACAGCTGCTTGTAGGGT+GGG + chr4_4:76988415-76988434 None:intergenic 50.0%
CAAGTGCAGCAGAGGTAAGA+GGG + chr4_4:76988459-76988478 None:intergenic 50.0%
ACAAGTGCAGCAGAGGTAAG+AGG + chr4_4:76988460-76988479 None:intergenic 50.0%
! GTTTGGTGGAGTGGAGGAGT+GGG + chr4_4:76985307-76985326 None:intergenic 55.0%
CAAAAGAGGGAGGGGTTTGG+TGG + chr4_4:76985321-76985340 None:intergenic 55.0%
GGCGAGAAACGGAAATAGCG+GGG + chr4_4:76985511-76985530 None:intergenic 55.0%
! TCCACCCCGGTGCTCATTTT+GGG + chr4_4:76985572-76985591 None:intergenic 55.0%
TCTGTTCTTCTGCTCCACCC+CGG + chr4_4:76985585-76985604 None:intergenic 55.0%
GCCACTGCTCTTGTTCAAGC+TGG - chr4_4:76985719-76985738 Msa0704550:intron 55.0%
GCCAGCTTGAACAAGAGCAG+TGG + chr4_4:76985723-76985742 None:intergenic 55.0%
CCTGTTATTCGCTTGGCTGC+CGG - chr4_4:76985746-76985765 Msa0704550:intron 55.0%
! AGTTTGCTCACCGGGAGATG+AGG - chr4_4:76986226-76986245 Msa0704550:intron 55.0%
! CGGCCAACCTTGCCATTTCT+GGG + chr4_4:76987032-76987051 None:intergenic 55.0%
! TCGGCCAACCTTGCCATTTC+TGG + chr4_4:76987033-76987052 None:intergenic 55.0%
ACCGCAGGCCTTTGCAATGA+CGG - chr4_4:76987637-76987656 Msa0704550:intron 55.0%
!! AGGCCTTTGCAATGACGGGT+TGG - chr4_4:76987642-76987661 Msa0704550:intron 55.0%
!! CCTTTGCAATGACGGGTTGG+CGG - chr4_4:76987645-76987664 Msa0704550:intron 55.0%
TTAGGACTAGGCTATGCCGG+TGG - chr4_4:76987909-76987928 Msa0704550:intron 55.0%
TAGGACTAGGCTATGCCGGT+GGG - chr4_4:76987910-76987929 Msa0704550:intron 55.0%
!! TGGGGAGGCTGTTTCTACCA+TGG - chr4_4:76987929-76987948 Msa0704550:intron 55.0%
TCGTCACCAAATGCACTCCC+TGG + chr4_4:76988358-76988377 None:intergenic 55.0%
AGCTGCTTGTAGGGTGGGAA+GGG + chr4_4:76988410-76988429 None:intergenic 55.0%
CTCTACAGCTGCTTGTAGGG+TGG + chr4_4:76988416-76988435 None:intergenic 55.0%
!! GGTTTGGTGGAGTGGAGGAG+TGG + chr4_4:76985308-76985327 None:intergenic 60.0%
!! TCCCAAAATGAGCACCGGGG+TGG - chr4_4:76985568-76985587 Msa0704550:CDS 60.0%
! CTCCACCCCGGTGCTCATTT+TGG + chr4_4:76985573-76985592 None:intergenic 60.0%
CCGGCAGCCAAGCGAATAAC+AGG + chr4_4:76985749-76985768 None:intergenic 60.0%
TACACCCGCGGTTATTGCCG+AGG - chr4_4:76985784-76985803 Msa0704550:CDS 60.0%
! AGCAAAGCACCCCAGGCTTC+TGG - chr4_4:76987224-76987243 Msa0704550:intron 60.0%
CCCGTCATTGCAAAGGCCTG+CGG + chr4_4:76987641-76987660 None:intergenic 60.0%
CCGCAGGCCTTTGCAATGAC+GGG - chr4_4:76987638-76987657 Msa0704550:intron 60.0%
CCGCCAACCCGTCATTGCAA+AGG + chr4_4:76987648-76987667 None:intergenic 60.0%
AGGACTAGGCTATGCCGGTG+GGG - chr4_4:76987911-76987930 Msa0704550:intron 60.0%
GGTAGAAACAGCCTCCCCAC+CGG + chr4_4:76987928-76987947 None:intergenic 60.0%
CAGCTGCTTGTAGGGTGGGA+AGG + chr4_4:76988411-76988430 None:intergenic 60.0%
GGAGTGGGTGCGGAGAGAGT+TGG + chr4_4:76985292-76985311 None:intergenic 65.0%
GTGGAGTGGAGGAGTGGGTG+CGG + chr4_4:76985302-76985321 None:intergenic 65.0%
!! GGAGGGGTTTGGTGGAGTGG+AGG + chr4_4:76985313-76985332 None:intergenic 65.0%
!! GAGGGAGGGGTTTGGTGGAG+TGG + chr4_4:76985316-76985335 None:intergenic 65.0%
!! GCAATGACGGGTTGGCGGCT+TGG - chr4_4:76987650-76987669 Msa0704550:intron 65.0%
ACTAGGCTATGCCGGTGGGG+AGG - chr4_4:76987914-76987933 Msa0704550:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 76985250 76988787 76985250 ID=Msa0704550;Name=Msa0704550
chr4_4 mRNA 76985250 76988787 76985250 ID=Msa0704550-mRNA-1;Parent=Msa0704550;Name=Msa0704550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=196|1|1|1|1|1|9|304|476
chr4_4 exon 76985250 76985694 76985250 ID=Msa0704550-mRNA-1:exon:24285;Parent=Msa0704550-mRNA-1
chr4_4 exon 76985782 76985895 76985782 ID=Msa0704550-mRNA-1:exon:24284;Parent=Msa0704550-mRNA-1
chr4_4 exon 76986006 76986176 76986006 ID=Msa0704550-mRNA-1:exon:24283;Parent=Msa0704550-mRNA-1
chr4_4 exon 76986310 76986393 76986310 ID=Msa0704550-mRNA-1:exon:24282;Parent=Msa0704550-mRNA-1
chr4_4 exon 76986583 76986696 76986583 ID=Msa0704550-mRNA-1:exon:24281;Parent=Msa0704550-mRNA-1
chr4_4 exon 76986792 76987040 76986792 ID=Msa0704550-mRNA-1:exon:24280;Parent=Msa0704550-mRNA-1
chr4_4 exon 76987790 76987893 76987790 ID=Msa0704550-mRNA-1:exon:24279;Parent=Msa0704550-mRNA-1
chr4_4 exon 76987988 76988081 76987988 ID=Msa0704550-mRNA-1:exon:24278;Parent=Msa0704550-mRNA-1
chr4_4 exon 76988232 76988787 76988232 ID=Msa0704550-mRNA-1:exon:24277;Parent=Msa0704550-mRNA-1
chr4_4 five_prime_UTR 76988592 76988787 76988592 ID=Msa0704550-mRNA-1:five_prime_utr;Parent=Msa0704550-mRNA-1
chr4_4 CDS 76988232 76988591 76988232 ID=Msa0704550-mRNA-1:cds;Parent=Msa0704550-mRNA-1
chr4_4 CDS 76987988 76988081 76987988 ID=Msa0704550-mRNA-1:cds;Parent=Msa0704550-mRNA-1
chr4_4 CDS 76987790 76987893 76987790 ID=Msa0704550-mRNA-1:cds;Parent=Msa0704550-mRNA-1
chr4_4 CDS 76986792 76987040 76986792 ID=Msa0704550-mRNA-1:cds;Parent=Msa0704550-mRNA-1
chr4_4 CDS 76986583 76986696 76986583 ID=Msa0704550-mRNA-1:cds;Parent=Msa0704550-mRNA-1
chr4_4 CDS 76986310 76986393 76986310 ID=Msa0704550-mRNA-1:cds;Parent=Msa0704550-mRNA-1
chr4_4 CDS 76986006 76986176 76986006 ID=Msa0704550-mRNA-1:cds;Parent=Msa0704550-mRNA-1
chr4_4 CDS 76985782 76985895 76985782 ID=Msa0704550-mRNA-1:cds;Parent=Msa0704550-mRNA-1
chr4_4 CDS 76985554 76985694 76985554 ID=Msa0704550-mRNA-1:cds;Parent=Msa0704550-mRNA-1
chr4_4 three_prime_UTR 76985250 76985553 76985250 ID=Msa0704550-mRNA-1:three_prime_utr;Parent=Msa0704550-mRNA-1
Gene Sequence

>Msa0704550

ATGGCCAACACATTCTTACACAACAACACCACGTGTACAATCTCTTTCCCTGATAAATCTCTCCCCGCTATTTCCGTTTCTCGCCACAGATCTCTCTCTTTCTCCTCAAACCTTTCCACGTTTCCCAAAATGAGCACCGGGGTGGAGCAGAAGAACAGAAGAGAAACAATAATTGTCAACTCAAAATCCGATTCTGAATTGGAAGTTGATATTTCATTGAGTCCACGTGTTAATGCTGTCAAACCTTCAAGAACTGTCGCTATTACTGATCAAGCCACTGCTCTTGTTCAAGCTGGCGTTCCTGTTATTCGCTTGGCTGCCGGTGAACCTGATTTTGATACACCCGCGGTTATTGCCGAGGCTGGGATTAATGCAATTCGTGAAGGATACACAAGGTATACCCCTAATGCTGGAACATTAGAATTACGGCAAGCAATTTGTCATAAGCTTAAAGAGGAGAATGGACTTGATTATACTCCTGATCAGATTGTTGTTACTAATGGAGCTAAGCAGAGTATTACTCAGGCAGTGATTGCAGTTTGCTCACCGGGAGATGAGGTCATTATTCCAGCTCCATTTTGGGTCAGTTACCCAGAAATGGCAAGGTTGGCCGATGCAACACCTGTGATTCTTCCAACGTCAATATCCAACAATTTCCTTTTAAATCCCAAACTTCTTGAGTCCAAAATTACTGAAAAGTCAAGACTACTTATTCTTTGTTCACCATCTAACCCGACAGGATCTGTGTATCCTAAAAATTTACTTGAAGAGATAGCTAAGATTGTAGCAAAGCACCCCAGGCTTCTGGTTATCTCTGATGAAATTTACGAACACATAATTTATGCCCCAGCAACGCATACAAGCTTTGCATCTTTACCGAAAATGTGGAACAGAACTCTAACTGTGAATGGATTTTCTAAGGCCTTTGCAATGACGGGTTGGCGGCTTGGATATATTGCTGGCCCGAAGCATTTTATTACAGCAGTCGGAAAGATCCAAAGTCAGTTCACTTCAGGGCCTAGTAGTATATCCCAGAAAGCAGGAGTTGCTGCATTAGGACTAGGCTATGCCGGTGGGGAGGCTGTTTCTACCATGGTGAAAGCGTTTAGAGAACGAAGGGATTACTTGGTTAAAAGTTTTAGCGAAATTGATGGTGTTAAAATATCTGAACCACAGGGCGCATTTTATTTATTCATTGATTTCAGCTCCTATTACGGAAAAGAAGCTGAGGGATTTGGTAAAATTGAGAATTCCGAGTCTCTCTGTCGATATCTGTTGGATAAAGGCCAGGTAGCACTTGTTCCAGGGAGTGCATTTGGTGACGATACTTGCATCCGTATCTCTTATGCGGCATCCCTTCCCACCCTACAAGCAGCTGTAGAGAATATTAAGAAAGCACTCATCCCTCTTACCTCTGCTGCACTTGTTTAA
Protein sequence

>Msa0704550

MANTFLHNNTTCTISFPDKSLPAISVSRHRSLSFSSNLSTFPKMSTGVEQKNRRETIIVNSKSDSELEVDISLSPRVNAVKPSRTVAITDQATALVQAGVPVIRLAAGEPDFDTPAVIAEAGINAIREGYTRYTPNAGTLELRQAICHKLKEENGLDYTPDQIVVTNGAKQSITQAVIAVCSPGDEVIIPAPFWVSYPEMARLADATPVILPTSISNNFLLNPKLLESKITEKSRLLILCSPSNPTGSVYPKNLLEEIAKIVAKHPRLLVISDEIYEHIIYAPATHTSFASLPKMWNRTLTVNGFSKAFAMTGWRLGYIAGPKHFITAVGKIQSQFTSGPSSISQKAGVAALGLGYAGGEAVSTMVKAFRERRDYLVKSFSEIDGVKISEPQGAFYLFIDFSSYYGKEAEGFGKIENSESLCRYLLDKGQVALVPGSAFGDDTCIRISYAASLPTLQAAVENIKKALIPLTSAALV*