AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0617370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0617370 MtrunA17_Chr8g0376971 94.545 660 35 1 1 659 1 660 0.0 1298
Msa0617370 MtrunA17_Chr3g0122941 58.140 688 235 19 1 658 1 665 0.0 733
Msa0617370 MtrunA17_Chr6g0458951 48.271 665 305 16 1 635 1 656 0.0 538
Msa0617370 MtrunA17_Chr7g0276681 28.819 288 169 7 99 382 40 295 3.35e-18 88.6
Msa0617370 MtrunA17_Chr2g0327711 25.887 282 172 8 106 382 31 280 1.43e-15 80.1
Msa0617370 MtrunA17_Chr2g0327711 30.769 195 119 3 102 296 66 244 5.59e-15 78.2
Msa0617370 MtrunA17_Chr2g0327711 27.957 186 116 4 221 405 101 269 7.82e-13 71.6
Msa0617370 MtrunA17_Chr7g0263421 27.686 242 140 5 106 345 53 261 3.35e-15 79.0
Msa0617370 MtrunA17_Chr4g0030551 25.943 212 139 3 188 399 108 301 1.23e-14 77.0
Msa0617370 MtrunA17_Chr7g0263471 30.808 198 119 6 189 386 162 341 1.47e-14 77.0
Msa0617370 MtrunA17_Chr7g0263471 26.515 264 161 10 133 385 65 306 1.94e-12 70.5
Msa0617370 MtrunA17_Chr2g0331191 27.717 184 109 4 220 382 139 319 1.48e-13 73.9
Msa0617370 MtrunA17_Chr1g0212971 28.636 220 129 5 102 320 131 323 1.12e-12 71.2
Msa0617370 MtrunA17_Chr1g0212971 26.667 285 177 8 105 389 100 352 4.03e-12 69.3
Msa0617370 MtrunA17_Chr2g0331201 27.717 184 109 5 220 382 139 319 4.55e-12 69.3
Msa0617370 MtrunA17_Chr5g0409271 32.022 178 92 7 175 352 10 158 5.22e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0617370 AT3G01750.2 49.483 580 264 8 1 559 1 572 0.0 537
Msa0617370 AT3G01750.1 49.483 580 264 8 1 559 1 572 0.0 537
Msa0617370 AT3G04140.1 43.769 674 320 18 1 650 1 639 1.87e-161 479
Msa0617370 AT2G31820.1 28.125 288 171 7 99 382 148 403 6.29e-18 88.6
Msa0617370 AT1G07710.2 25.887 282 174 8 105 382 30 280 3.53e-15 79.3
Msa0617370 AT1G07710.2 30.151 199 120 5 98 296 99 278 2.09e-13 73.6
Msa0617370 AT1G07710.2 26.147 218 144 4 188 405 69 269 3.26e-13 73.2
Msa0617370 AT1G07710.2 31.980 197 114 5 102 296 66 244 4.91e-13 72.4
Msa0617370 AT1G07710.1 25.887 282 174 8 105 382 30 280 3.53e-15 79.3
Msa0617370 AT1G07710.1 30.151 199 120 5 98 296 99 278 2.09e-13 73.6
Msa0617370 AT1G07710.1 26.147 218 144 4 188 405 69 269 3.26e-13 73.2
Msa0617370 AT1G07710.1 31.980 197 114 5 102 296 66 244 4.91e-13 72.4
Msa0617370 AT5G02620.4 28.061 196 121 5 188 382 94 270 6.12e-13 72.0
Msa0617370 AT5G02620.1 28.061 196 121 5 188 382 94 270 6.12e-13 72.0
Msa0617370 AT5G02620.3 28.061 196 121 5 188 382 94 270 6.12e-13 72.0
Msa0617370 AT5G02620.5 31.250 160 91 4 188 346 94 235 6.19e-12 68.9
Msa0617370 AT5G02620.2 31.250 160 91 4 188 346 94 235 6.19e-12 68.9
Msa0617370 AT5G54610.1 25.714 210 144 5 184 391 36 235 9.50e-12 68.2
Msa0617370 AT3G09550.1 28.796 191 118 5 188 378 181 353 1.40e-11 68.2
Msa0617370 AT3G09550.3 28.796 191 118 5 188 378 181 353 1.40e-11 68.2
Msa0617370 AT3G09550.2 28.796 191 118 5 188 378 188 360 1.56e-11 67.8
Msa0617370 AT1G03670.1 35.606 132 75 4 183 306 35 164 2.20e-11 67.4
Msa0617370 AT5G60070.1 27.928 222 131 6 190 404 113 312 2.24e-11 67.4
Msa0617370 AT5G60070.1 29.231 195 123 3 102 296 73 252 3.68e-11 66.6
Msa0617370 AT2G01680.1 27.778 198 125 5 197 393 70 250 4.08e-11 66.2

Find 117 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGACTAGTGGTGTTAAT+TGG 0.207448 4_2:+67840682 Msa0617370:CDS
AAGAATTTCCAATCTCATTA+AGG 0.276743 4_2:+67840826 Msa0617370:CDS
TGCTGCTTCTGCTGGTGATT+TGG 0.292656 4_2:+67838952 Msa0617370:CDS
ATCATCGTCTTCAAATTCTA+AGG 0.293118 4_2:-67840763 None:intergenic
GGACTGCCCTCTTGCTCTTC+CGG 0.294862 4_2:+67841044 Msa0617370:CDS
TCTCTCATTCGTGGTGGATA+TGG 0.311166 4_2:+67838911 Msa0617370:CDS
TATCTTTGCCTTAATGAGAT+TGG 0.319231 4_2:-67840834 None:intergenic
CCTAATGCAAGGTGTAATTA+AGG 0.327932 4_2:+67840950 Msa0617370:CDS
TCAGTAGAGTTTACAATATC+AGG 0.332328 4_2:-67839991 None:intergenic
TGATATTCTAAATGAAGTTC+CGG 0.337345 4_2:-67840541 None:intergenic
ACAAATTGCTGGCTGGTTGC+AGG 0.337766 4_2:-67838356 None:intergenic
ACAAAAGAACACTATCTATA+AGG 0.350958 4_2:+67840883 Msa0617370:CDS
TTGAAAACTCGTCATGGTAT+TGG 0.358691 4_2:+67840510 Msa0617370:CDS
CTCCTTATAGTTCAACTGTT+GGG 0.368527 4_2:-67841087 None:intergenic
CCTTAATTACACCTTGCATT+AGG 0.369020 4_2:-67840950 None:intergenic
AGATTGTGGTATTGTTGAAT+TGG 0.372361 4_2:+67839120 Msa0617370:CDS
TTGTATACTGCTGCTTCTGC+TGG 0.379152 4_2:+67838944 Msa0617370:CDS
TTAATAATTCTGTAAGTTCA+AGG 0.385745 4_2:+67840790 Msa0617370:CDS
TTTCTTCATATGGCAGTGTA+TGG 0.393239 4_2:+67840132 Msa0617370:CDS
CTGCTGCTAGAGGAGGGAAT+TGG 0.395808 4_2:+67839200 Msa0617370:CDS
CTTGTACTTCACTGTTTACA+AGG 0.398911 4_2:+67838401 Msa0617370:five_prime_UTR
TGCTGCTAGAGGAGGGAATT+GGG 0.409718 4_2:+67839201 Msa0617370:CDS
AATTCAGAAGATCTTGATCT+TGG 0.413086 4_2:-67840408 None:intergenic
TTCTTACTTTCCTCTACGTT+GGG 0.414168 4_2:+67838637 Msa0617370:CDS
TGGAGCACAAGGGCAGGCTT+TGG 0.420864 4_2:+67841151 Msa0617370:CDS
CAAGACTAGTGGTGTTAATT+GGG 0.421578 4_2:+67840683 Msa0617370:CDS
GTTGAGAAGAGATTCTTTGT+TGG 0.423804 4_2:+67838991 Msa0617370:CDS
TTTGCAGCTGCTAAATCAAT+AGG 0.426019 4_2:-67838692 None:intergenic
TTGGATGAAGGTGGTGGTGG+TGG 0.428570 4_2:+67839139 Msa0617370:CDS
GTGTATGGTTTCATAAATCC+TGG 0.431340 4_2:+67840147 Msa0617370:CDS
TCAAGAGGGAGATAATGAAT+AGG 0.434364 4_2:+67839167 Msa0617370:CDS
ATCAATGTCATGAACAATGT+TGG 0.435421 4_2:+67840249 Msa0617370:CDS
AAAAGTGTCTCCATTGTGAT+TGG 0.439400 4_2:-67840112 None:intergenic
TACCCAACAGTTGAACTATA+AGG 0.443698 4_2:+67841085 Msa0617370:CDS
CTTCAACACAGTGATTTGAA+TGG 0.449511 4_2:+67838610 Msa0617370:intron
GATATTCTAAATGAAGTTCC+GGG 0.452704 4_2:-67840540 None:intergenic
CAAGAGGGAGATAATGAATA+GGG 0.454391 4_2:+67839168 Msa0617370:CDS
GAATTGGATGAAGGTGGTGG+TGG 0.455900 4_2:+67839136 Msa0617370:CDS
CTGGCTGGTTGCAGGCTGAA+TGG 0.459099 4_2:-67838348 None:intergenic
CGTTGCATAAATGTTACTAC+TGG 0.459987 4_2:+67841229 Msa0617370:exon
TGCTCTTCCGGACCAATAGA+TGG 0.463195 4_2:+67841056 Msa0617370:CDS
CGAAAAGGTTGCGAACATAA+AGG 0.466998 4_2:+67840221 Msa0617370:CDS
TGAGAAGATTTGTATCATGA+TGG 0.469922 4_2:-67838745 None:intergenic
GGTATTGTTGAATTGGATGA+AGG 0.476941 4_2:+67839127 Msa0617370:CDS
TCAATGTCATGAACAATGTT+GGG 0.477167 4_2:+67840250 Msa0617370:CDS
TGAGTTATTACTAACCGAAA+AGG 0.479208 4_2:+67840206 Msa0617370:CDS
ACTGTCTTGCATTCAGCAGC+TGG 0.480625 4_2:+67839295 Msa0617370:CDS
TTGTCTTATAGAGATGTTCA+AGG 0.483573 4_2:+67839268 Msa0617370:CDS
AAATGTTACTACTGGTATCA+TGG 0.489413 4_2:+67841237 Msa0617370:exon
CTTAACATTCGCGACGCAGA+TGG 0.490419 4_2:+67840354 Msa0617370:CDS
TCTCCTTATAGTTCAACTGT+TGG 0.494101 4_2:-67841088 None:intergenic
ATTGATTTAGCAGCTGCAAA+TGG 0.494631 4_2:+67838695 Msa0617370:CDS
AGTGCTTTGAATTGTAGCCT+TGG 0.497150 4_2:-67841403 None:intergenic
CTTCTTACTTTCCTCTACGT+TGG 0.504888 4_2:+67838636 Msa0617370:CDS
TTGCATTCAGCAGCTGGAAG+AGG 0.512797 4_2:+67839301 Msa0617370:CDS
AGCTGGAAGAGGCCAGGTTG+AGG 0.513559 4_2:+67839312 Msa0617370:CDS
GAGTGTGAAGAAACAGCAAC+AGG 0.514596 4_2:+67838881 Msa0617370:CDS
TGGTGACTAGGAGATAGTTA+AGG 0.522829 4_2:-67838328 None:intergenic
CTACTGGTATCATGGTGGAT+TGG 0.523695 4_2:+67841245 Msa0617370:three_prime_UTR
CACAAACATGTTGATACACT+GGG 0.530524 4_2:+67841023 Msa0617370:CDS
CTCATTCGTGGTGGATATGG+TGG 0.531172 4_2:+67838914 Msa0617370:CDS
TTCAGCAGCTGGAAGAGGCC+AGG 0.531435 4_2:+67839306 Msa0617370:CDS
AAAACTCGTCATGGTATTGG+AGG 0.532617 4_2:+67840513 Msa0617370:CDS
CATGGTATTGGAGGTAGTCC+CGG 0.533373 4_2:+67840522 Msa0617370:CDS
GCACAAACATGTTGATACAC+TGG 0.533788 4_2:+67841022 Msa0617370:CDS
ATTGGTTAACTTTGTTAGTG+AGG 0.537838 4_2:-67840094 None:intergenic
TTGGTTAACTTTGTTAGTGA+GGG 0.539818 4_2:-67840093 None:intergenic
CTTCCGGACCAATAGATGGT+GGG 0.540457 4_2:+67841060 Msa0617370:CDS
TTCCGGACCAATAGATGGTG+GGG 0.545341 4_2:+67841061 Msa0617370:CDS
GTGTTAATTGGGCCGCGAGA+CGG 0.548204 4_2:+67840694 Msa0617370:CDS
ATCCATGCTGCTGCTAGAGG+AGG 0.556428 4_2:+67839193 Msa0617370:CDS
CCTCTACGTTGGGAGAGCAC+AGG 0.559069 4_2:+67838647 Msa0617370:CDS
TAGGTGTTGCATACCACCAT+TGG 0.559115 4_2:-67838673 None:intergenic
GGAACAAACTCTCTCATTCG+TGG 0.569551 4_2:+67838902 Msa0617370:CDS
TTGTCTAGTCTGCAGAAACC+AGG 0.572724 4_2:-67840165 None:intergenic
ACAAAACTATACAACTGTTG+TGG 0.578030 4_2:-67838302 None:intergenic
CAACGTAGAGGAAAGTAAGA+AGG 0.582105 4_2:-67838635 None:intergenic
CTTGTAAACAGTGAAGTACA+AGG 0.582338 4_2:-67838400 None:intergenic
GCTATCCATGCTGCTGCTAG+AGG 0.583266 4_2:+67839190 Msa0617370:CDS
TCCCTCCTCTAGCAGCAGCA+TGG 0.591302 4_2:-67839195 None:intergenic
GCTCTCTTAGGAAAAGATTG+TGG 0.593730 4_2:+67839106 Msa0617370:CDS
ATAATGTTTGTTTAATATCG+CGG 0.599176 4_2:-67841331 None:intergenic
TGGTGGATTGGACAAAATCA+TGG 0.601523 4_2:+67841257 Msa0617370:three_prime_UTR
TTGAAGATGTTGCAAAGTGT+AGG 0.602447 4_2:+67838831 Msa0617370:CDS
TTACAGAGGTTACCTTCATG+TGG 0.604215 4_2:+67840047 Msa0617370:CDS
TTACATGTGGCTTCTTACAG+AGG 0.607361 4_2:+67840033 Msa0617370:CDS
TATTGGTCCGGAAGAGCAAG+AGG 0.608650 4_2:-67841051 None:intergenic
TCTTCCGGACCAATAGATGG+TGG 0.609522 4_2:+67841059 Msa0617370:CDS
GTTGAATTGGATGAAGGTGG+TGG 0.611508 4_2:+67839133 Msa0617370:CDS
TCCGGACCAATAGATGGTGG+GGG 0.614815 4_2:+67841062 Msa0617370:CDS
TCCATGCTGCTGCTAGAGGA+GGG 0.615437 4_2:+67839194 Msa0617370:CDS
TTGCAGGCTGAATGGTGACT+AGG 0.618046 4_2:-67838340 None:intergenic
ACTCATTTGAAAACTCGTCA+TGG 0.623099 4_2:+67840504 Msa0617370:CDS
TTCACAGCAGGCCTAATGCA+AGG 0.623668 4_2:+67840939 Msa0617370:CDS
TTCGTGGTGGATATGGTGGA+TGG 0.624766 4_2:+67838918 Msa0617370:CDS
TGTGAGTACTTACCTCAACC+TGG 0.625786 4_2:-67839324 None:intergenic
TTAGAATCTCTACCACATGA+AGG 0.626407 4_2:-67840059 None:intergenic
ATATAGAAACTAATAAGCCA+AGG 0.626561 4_2:+67841386 Msa0617370:three_prime_UTR
ATTGTTGAATTGGATGAAGG+TGG 0.627731 4_2:+67839130 Msa0617370:CDS
GGGAGAGCACAGGAGACCAA+TGG 0.629721 4_2:+67838657 Msa0617370:CDS
AGCTAGGAGTAAGAATTCTG+AGG 0.643118 4_2:+67839060 Msa0617370:CDS
GTGGTGGTGGAGATTTCAAG+AGG 0.643581 4_2:+67839152 Msa0617370:CDS
ACTAGTCTTGCTGTTACATG+AGG 0.645032 4_2:-67840670 None:intergenic
TCATGTAACAGCAAGACTAG+TGG 0.650511 4_2:+67840672 Msa0617370:CDS
TCGTCGACTAGAAACTGTGT+GGG 0.654713 4_2:+67838793 Msa0617370:CDS
GGTTAATGAATCTTCTCAAG+TGG 0.655449 4_2:+67840715 Msa0617370:CDS
CCTGTGCTCTCCCAACGTAG+AGG 0.659563 4_2:-67838647 None:intergenic
ACAAAGTTAACCAATCACAA+TGG 0.661701 4_2:+67840102 Msa0617370:CDS
TGGTGGTGGAGATTTCAAGA+GGG 0.666190 4_2:+67839153 Msa0617370:CDS
AGAGCACAGGAGACCAATGG+TGG 0.668331 4_2:+67838660 Msa0617370:CDS
ACAAACTCTCTCATTCGTGG+TGG 0.676010 4_2:+67838905 Msa0617370:CDS
TTCGTCGACTAGAAACTGTG+TGG 0.676029 4_2:+67838792 Msa0617370:CDS
GTAAACTCTACTGATGCACA+AGG 0.676230 4_2:+67840000 Msa0617370:CDS
AGGTAATGCAGCATTACATG+TGG 0.677340 4_2:+67840020 Msa0617370:CDS
ATTGGTCCGGAAGAGCAAGA+GGG 0.694634 4_2:-67841050 None:intergenic
TGTTACTACTGGTATCATGG+TGG 0.697794 4_2:+67841240 Msa0617370:three_prime_UTR
AAGATTCATTAACCGTCTCG+CGG 0.701144 4_2:-67840706 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAATCATTCAATTATT+AGG - chr4_2:67838539-67838558 None:intergenic 15.0%
!!! ATTTTAGAGACAAAATTATA+TGG - chr4_2:67839626-67839645 None:intergenic 15.0%
!!! TATAATTTTGTTAATTTCAG+TGG + chr4_2:67839764-67839783 Msa0617370:intron 15.0%
!! AATAATGAGATGAAAATTCT+AGG - chr4_2:67838439-67838458 None:intergenic 20.0%
!! TATGAAAAAGTGAAAGTTAT+TGG - chr4_2:67838469-67838488 None:intergenic 20.0%
!! ACTGATAATAGTTTGAAAAT+TGG + chr4_2:67839481-67839500 Msa0617370:intron 20.0%
!! ACAAAATTATATGGTTTCTA+GGG - chr4_2:67839617-67839636 None:intergenic 20.0%
!!! ATAGGGAATTTTCATTTTTA+GGG + chr4_2:67839734-67839753 Msa0617370:intron 20.0%
!! AATGAAATAATTAATGATGC+AGG + chr4_2:67839942-67839961 Msa0617370:intron 20.0%
!!! CTTTTTTTCAAATAATCAAG+AGG - chr4_2:67840387-67840406 None:intergenic 20.0%
!! TTAATAATTCTGTAAGTTCA+AGG + chr4_2:67840790-67840809 Msa0617370:CDS 20.0%
!!! ATGAACAAGTATTTTTCTTT+TGG + chr4_2:67841131-67841150 Msa0617370:CDS 20.0%
!! ATAATGTTTGTTTAATATCG+CGG - chr4_2:67841334-67841353 None:intergenic 20.0%
! CTTTATGTTTATTCTTCTCT+TGG - chr4_2:67838493-67838512 None:intergenic 25.0%
! GTTGAAGAAATAAAGTAAAG+TGG - chr4_2:67838597-67838616 None:intergenic 25.0%
! GACAAAATTATATGGTTTCT+AGG - chr4_2:67839618-67839637 None:intergenic 25.0%
!! GATCGAAAATTTTCAATTTC+AGG - chr4_2:67839671-67839690 None:intergenic 25.0%
! ACCAACTTTATAATGTGATA+GGG + chr4_2:67839717-67839736 Msa0617370:intron 25.0%
!!! GATAGGGAATTTTCATTTTT+AGG + chr4_2:67839733-67839752 Msa0617370:intron 25.0%
! ACAGTTAATACTACATAATC+TGG + chr4_2:67839859-67839878 Msa0617370:intron 25.0%
! CAGTTAATACTACATAATCT+GGG + chr4_2:67839860-67839879 Msa0617370:intron 25.0%
! TGATATTCTAAATGAAGTTC+CGG - chr4_2:67840544-67840563 None:intergenic 25.0%
! AAGTTCAAGGAAAAATGATT+TGG + chr4_2:67840803-67840822 Msa0617370:CDS 25.0%
! AAGAATTTCCAATCTCATTA+AGG + chr4_2:67840826-67840845 Msa0617370:CDS 25.0%
! ACAAAAGAACACTATCTATA+AGG + chr4_2:67840883-67840902 Msa0617370:CDS 25.0%
!!! GTGAAATATTTTTTTGCAGA+TGG - chr4_2:67840924-67840943 None:intergenic 25.0%
!! TGATTTTGTTGAAACTATAG+TGG + chr4_2:67841288-67841307 Msa0617370:three_prime_UTR 25.0%
! ATATAGAAACTAATAAGCCA+AGG + chr4_2:67841386-67841405 Msa0617370:three_prime_UTR 25.0%
ACAAAACTATACAACTGTTG+TGG - chr4_2:67838305-67838324 None:intergenic 30.0%
TAGTAGCAAAAACAAATTGC+TGG - chr4_2:67838370-67838389 None:intergenic 30.0%
! ATGAGATGAAAATTCTAGGA+AGG - chr4_2:67838435-67838454 None:intergenic 30.0%
TGAGAAGATTTGTATCATGA+TGG - chr4_2:67838748-67838767 None:intergenic 30.0%
!!! AGAGATTCTTTGTTGGTTTT+TGG + chr4_2:67838998-67839017 Msa0617370:CDS 30.0%
! ATTCTTGATTTTGCTCTCTT+AGG + chr4_2:67839094-67839113 Msa0617370:CDS 30.0%
AGATTGTGGTATTGTTGAAT+TGG + chr4_2:67839120-67839139 Msa0617370:CDS 30.0%
TTGTCTTATAGAGATGTTCA+AGG + chr4_2:67839268-67839287 Msa0617370:CDS 30.0%
ACTCAGATTAAAAACGTATC+CGG - chr4_2:67839564-67839583 None:intergenic 30.0%
!! GTCTCTAAAATTGTAGAAGT+AGG + chr4_2:67839635-67839654 Msa0617370:intron 30.0%
GACCAACTTTATAATGTGAT+AGG + chr4_2:67839716-67839735 Msa0617370:intron 30.0%
TCCCTATCACATTATAAAGT+TGG - chr4_2:67839721-67839740 None:intergenic 30.0%
!! ATTTTAGTCCCTCAATACTT+GGG - chr4_2:67839803-67839822 None:intergenic 30.0%
CTACATAATCTGGGAATAAA+AGG + chr4_2:67839869-67839888 Msa0617370:intron 30.0%
GAAATAATTAATGATGCAGG+TGG + chr4_2:67839945-67839964 Msa0617370:intron 30.0%
TCAGTAGAGTTTACAATATC+AGG - chr4_2:67839994-67840013 None:intergenic 30.0%
TTGGTTAACTTTGTTAGTGA+GGG - chr4_2:67840096-67840115 None:intergenic 30.0%
ATTGGTTAACTTTGTTAGTG+AGG - chr4_2:67840097-67840116 None:intergenic 30.0%
ACAAAGTTAACCAATCACAA+TGG + chr4_2:67840102-67840121 Msa0617370:CDS 30.0%
TGAGTTATTACTAACCGAAA+AGG + chr4_2:67840206-67840225 Msa0617370:CDS 30.0%
ATCAATGTCATGAACAATGT+TGG + chr4_2:67840249-67840268 Msa0617370:CDS 30.0%
TCAATGTCATGAACAATGTT+GGG + chr4_2:67840250-67840269 Msa0617370:CDS 30.0%
AATTCAGAAGATCTTGATCT+TGG - chr4_2:67840411-67840430 None:intergenic 30.0%
GATATTCTAAATGAAGTTCC+GGG - chr4_2:67840543-67840562 None:intergenic 30.0%
ATCATCGTCTTCAAATTCTA+AGG - chr4_2:67840766-67840785 None:intergenic 30.0%
TATCTTTGCCTTAATGAGAT+TGG - chr4_2:67840837-67840856 None:intergenic 30.0%
!!! GATAGTGTTCTTTTGTTGTT+TGG - chr4_2:67840879-67840898 None:intergenic 30.0%
!!! TATTTTTTTGCAGATGGAGT+TGG - chr4_2:67840918-67840937 None:intergenic 30.0%
GCAAAAAAATATTTCACAGC+AGG + chr4_2:67840927-67840946 Msa0617370:CDS 30.0%
AAGGTAAAGACACAAAAAGA+AGG + chr4_2:67840969-67840988 Msa0617370:CDS 30.0%
AGGTAAAGACACAAAAAGAA+GGG + chr4_2:67840970-67840989 Msa0617370:CDS 30.0%
!!! TATTTTTCTTTTGGAGCACA+AGG + chr4_2:67841140-67841159 Msa0617370:CDS 30.0%
!!! ATTTTTCTTTTGGAGCACAA+GGG + chr4_2:67841141-67841160 Msa0617370:CDS 30.0%
AAATGTTACTACTGGTATCA+TGG + chr4_2:67841237-67841256 Msa0617370:exon 30.0%
CTTGTAAACAGTGAAGTACA+AGG - chr4_2:67838403-67838422 None:intergenic 35.0%
CTTGTACTTCACTGTTTACA+AGG + chr4_2:67838401-67838420 Msa0617370:five_prime_UTR 35.0%
CTTCAACACAGTGATTTGAA+TGG + chr4_2:67838610-67838629 Msa0617370:intron 35.0%
TTCTTACTTTCCTCTACGTT+GGG + chr4_2:67838637-67838656 Msa0617370:CDS 35.0%
TTTGCAGCTGCTAAATCAAT+AGG - chr4_2:67838695-67838714 None:intergenic 35.0%
! ATTGATTTAGCAGCTGCAAA+TGG + chr4_2:67838695-67838714 Msa0617370:CDS 35.0%
TTGAAGATGTTGCAAAGTGT+AGG + chr4_2:67838831-67838850 Msa0617370:CDS 35.0%
GTTGAGAAGAGATTCTTTGT+TGG + chr4_2:67838991-67839010 Msa0617370:CDS 35.0%
!!! TCTTTGTTGGTTTTTGGTGA+AGG + chr4_2:67839004-67839023 Msa0617370:CDS 35.0%
! ATATGTTTTATGCTGCAGCT+AGG + chr4_2:67839044-67839063 Msa0617370:CDS 35.0%
GGTATTGTTGAATTGGATGA+AGG + chr4_2:67839127-67839146 Msa0617370:CDS 35.0%
ATTGTTGAATTGGATGAAGG+TGG + chr4_2:67839130-67839149 Msa0617370:CDS 35.0%
TCAAGAGGGAGATAATGAAT+AGG + chr4_2:67839167-67839186 Msa0617370:CDS 35.0%
CAAGAGGGAGATAATGAATA+GGG + chr4_2:67839168-67839187 Msa0617370:CDS 35.0%
CTATGTCACATTCTAAACAC+CGG + chr4_2:67839542-67839561 Msa0617370:intron 35.0%
AATACTTGGGTAGAGCAATT+CGG - chr4_2:67839790-67839809 None:intergenic 35.0%
!! CATTTTAGTCCCTCAATACT+TGG - chr4_2:67839804-67839823 None:intergenic 35.0%
CATAATCTGGGAATAAAAGG+AGG + chr4_2:67839872-67839891 Msa0617370:intron 35.0%
TTAGAATCTCTACCACATGA+AGG - chr4_2:67840062-67840081 None:intergenic 35.0%
!! AAAAGTGTCTCCATTGTGAT+TGG - chr4_2:67840115-67840134 None:intergenic 35.0%
! TGGAGACACTTTTCTTCATA+TGG + chr4_2:67840122-67840141 Msa0617370:CDS 35.0%
TTTCTTCATATGGCAGTGTA+TGG + chr4_2:67840132-67840151 Msa0617370:CDS 35.0%
GTGTATGGTTTCATAAATCC+TGG + chr4_2:67840147-67840166 Msa0617370:CDS 35.0%
! CTTTATGTTCGCAACCTTTT+CGG - chr4_2:67840223-67840242 None:intergenic 35.0%
ACTCATTTGAAAACTCGTCA+TGG + chr4_2:67840504-67840523 Msa0617370:CDS 35.0%
TTGAAAACTCGTCATGGTAT+TGG + chr4_2:67840510-67840529 Msa0617370:CDS 35.0%
! CAAGACTAGTGGTGTTAATT+GGG + chr4_2:67840683-67840702 Msa0617370:CDS 35.0%
GGTTAATGAATCTTCTCAAG+TGG + chr4_2:67840715-67840734 Msa0617370:CDS 35.0%
CCTTAATTACACCTTGCATT+AGG - chr4_2:67840953-67840972 None:intergenic 35.0%
CCTAATGCAAGGTGTAATTA+AGG + chr4_2:67840950-67840969 Msa0617370:CDS 35.0%
CACAAACATGTTGATACACT+GGG + chr4_2:67841023-67841042 Msa0617370:CDS 35.0%
TACCCAACAGTTGAACTATA+AGG + chr4_2:67841085-67841104 Msa0617370:CDS 35.0%
CTCCTTATAGTTCAACTGTT+GGG - chr4_2:67841090-67841109 None:intergenic 35.0%
TCTCCTTATAGTTCAACTGT+TGG - chr4_2:67841091-67841110 None:intergenic 35.0%
CGTTGCATAAATGTTACTAC+TGG + chr4_2:67841229-67841248 Msa0617370:exon 35.0%
TGGTGACTAGGAGATAGTTA+AGG - chr4_2:67838331-67838350 None:intergenic 40.0%
AGCAAAAACAAATTGCTGGC+TGG - chr4_2:67838366-67838385 None:intergenic 40.0%
CAACGTAGAGGAAAGTAAGA+AGG - chr4_2:67838638-67838657 None:intergenic 40.0%
CTTCTTACTTTCCTCTACGT+TGG + chr4_2:67838636-67838655 Msa0617370:CDS 40.0%
!!! GTTTTTGGTGAAGGAGAGTA+TGG + chr4_2:67839013-67839032 Msa0617370:CDS 40.0%
AGCTAGGAGTAAGAATTCTG+AGG + chr4_2:67839060-67839079 Msa0617370:CDS 40.0%
GCTCTCTTAGGAAAAGATTG+TGG + chr4_2:67839106-67839125 Msa0617370:CDS 40.0%
! CTTGCTATGAAGTTCTGACA+TGG + chr4_2:67839442-67839461 Msa0617370:intron 40.0%
! TTTCTAGGGATCATACAAGC+AGG - chr4_2:67839603-67839622 None:intergenic 40.0%
! ATTGCTCTACCCAAGTATTG+AGG + chr4_2:67839791-67839810 Msa0617370:intron 40.0%
!! TTGCTCTACCCAAGTATTGA+GGG + chr4_2:67839792-67839811 Msa0617370:intron 40.0%
GTAAACTCTACTGATGCACA+AGG + chr4_2:67840000-67840019 Msa0617370:CDS 40.0%
AGGTAATGCAGCATTACATG+TGG + chr4_2:67840020-67840039 Msa0617370:CDS 40.0%
TTACATGTGGCTTCTTACAG+AGG + chr4_2:67840033-67840052 Msa0617370:CDS 40.0%
TTACAGAGGTTACCTTCATG+TGG + chr4_2:67840047-67840066 Msa0617370:CDS 40.0%
CGAAAAGGTTGCGAACATAA+AGG + chr4_2:67840221-67840240 Msa0617370:CDS 40.0%
! AAAACTCGTCATGGTATTGG+AGG + chr4_2:67840513-67840532 Msa0617370:CDS 40.0%
!! ACTAGTCTTGCTGTTACATG+AGG - chr4_2:67840673-67840692 None:intergenic 40.0%
TCATGTAACAGCAAGACTAG+TGG + chr4_2:67840672-67840691 Msa0617370:CDS 40.0%
! GCAAGACTAGTGGTGTTAAT+TGG + chr4_2:67840682-67840701 Msa0617370:CDS 40.0%
AAGATTCATTAACCGTCTCG+CGG - chr4_2:67840709-67840728 None:intergenic 40.0%
GCACAAACATGTTGATACAC+TGG + chr4_2:67841022-67841041 Msa0617370:CDS 40.0%
TGTTACTACTGGTATCATGG+TGG + chr4_2:67841240-67841259 Msa0617370:three_prime_UTR 40.0%
!! TGGTGGATTGGACAAAATCA+TGG + chr4_2:67841257-67841276 Msa0617370:three_prime_UTR 40.0%
! AGTGCTTTGAATTGTAGCCT+TGG - chr4_2:67841406-67841425 None:intergenic 40.0%
! TAGGTGTTGCATACCACCAT+TGG - chr4_2:67838676-67838695 None:intergenic 45.0%
! TTCGTCGACTAGAAACTGTG+TGG + chr4_2:67838792-67838811 Msa0617370:CDS 45.0%
! TCGTCGACTAGAAACTGTGT+GGG + chr4_2:67838793-67838812 Msa0617370:CDS 45.0%
GAGTGTGAAGAAACAGCAAC+AGG + chr4_2:67838881-67838900 Msa0617370:CDS 45.0%
GGAACAAACTCTCTCATTCG+TGG + chr4_2:67838902-67838921 Msa0617370:CDS 45.0%
ACAAACTCTCTCATTCGTGG+TGG + chr4_2:67838905-67838924 Msa0617370:CDS 45.0%
!! TCTCTCATTCGTGGTGGATA+TGG + chr4_2:67838911-67838930 Msa0617370:CDS 45.0%
! TTGTATACTGCTGCTTCTGC+TGG + chr4_2:67838944-67838963 Msa0617370:CDS 45.0%
GTTGAATTGGATGAAGGTGG+TGG + chr4_2:67839133-67839152 Msa0617370:CDS 45.0%
!! TGGTGGTGGAGATTTCAAGA+GGG + chr4_2:67839153-67839172 Msa0617370:CDS 45.0%
TGTGAGTACTTACCTCAACC+TGG - chr4_2:67839327-67839346 None:intergenic 45.0%
GGTTGAGGTAAGTACTCACA+TGG + chr4_2:67839327-67839346 Msa0617370:intron 45.0%
GTCAGAACTTCATAGCAAGC+AGG - chr4_2:67839441-67839460 None:intergenic 45.0%
TTGTCTAGTCTGCAGAAACC+AGG - chr4_2:67840168-67840187 None:intergenic 45.0%
!! CTACTGGTATCATGGTGGAT+TGG + chr4_2:67841245-67841264 Msa0617370:three_prime_UTR 45.0%
TTGCAGGCTGAATGGTGACT+AGG - chr4_2:67838343-67838362 None:intergenic 50.0%
! ACAAATTGCTGGCTGGTTGC+AGG - chr4_2:67838359-67838378 None:intergenic 50.0%
!! CTCATTCGTGGTGGATATGG+TGG + chr4_2:67838914-67838933 Msa0617370:CDS 50.0%
!! TTCGTGGTGGATATGGTGGA+TGG + chr4_2:67838918-67838937 Msa0617370:CDS 50.0%
! TGCTGCTTCTGCTGGTGATT+TGG + chr4_2:67838952-67838971 Msa0617370:CDS 50.0%
! GAATTGGATGAAGGTGGTGG+TGG + chr4_2:67839136-67839155 Msa0617370:CDS 50.0%
!! GTGGTGGTGGAGATTTCAAG+AGG + chr4_2:67839152-67839171 Msa0617370:CDS 50.0%
TGCTGCTAGAGGAGGGAATT+GGG + chr4_2:67839201-67839220 Msa0617370:CDS 50.0%
ACTGTCTTGCATTCAGCAGC+TGG + chr4_2:67839295-67839314 Msa0617370:CDS 50.0%
TTGCATTCAGCAGCTGGAAG+AGG + chr4_2:67839301-67839320 Msa0617370:CDS 50.0%
CTTAACATTCGCGACGCAGA+TGG + chr4_2:67840354-67840373 Msa0617370:CDS 50.0%
! CATGGTATTGGAGGTAGTCC+CGG + chr4_2:67840522-67840541 Msa0617370:CDS 50.0%
TTCACAGCAGGCCTAATGCA+AGG + chr4_2:67840939-67840958 Msa0617370:CDS 50.0%
ATTGGTCCGGAAGAGCAAGA+GGG - chr4_2:67841053-67841072 None:intergenic 50.0%
TATTGGTCCGGAAGAGCAAG+AGG - chr4_2:67841054-67841073 None:intergenic 50.0%
TGCTCTTCCGGACCAATAGA+TGG + chr4_2:67841056-67841075 Msa0617370:CDS 50.0%
TCTTCCGGACCAATAGATGG+TGG + chr4_2:67841059-67841078 Msa0617370:CDS 50.0%
CTTCCGGACCAATAGATGGT+GGG + chr4_2:67841060-67841079 Msa0617370:CDS 50.0%
TTCCGGACCAATAGATGGTG+GGG + chr4_2:67841061-67841080 Msa0617370:CDS 50.0%
!!! TTCTTTTGGAGCACAAGGGC+AGG + chr4_2:67841145-67841164 Msa0617370:CDS 50.0%
AGAGCACAGGAGACCAATGG+TGG + chr4_2:67838660-67838679 Msa0617370:CDS 55.0%
!! TTGGATGAAGGTGGTGGTGG+TGG + chr4_2:67839139-67839158 Msa0617370:CDS 55.0%
GCTATCCATGCTGCTGCTAG+AGG + chr4_2:67839190-67839209 Msa0617370:CDS 55.0%
ATCCATGCTGCTGCTAGAGG+AGG + chr4_2:67839193-67839212 Msa0617370:CDS 55.0%
TCCATGCTGCTGCTAGAGGA+GGG + chr4_2:67839194-67839213 Msa0617370:CDS 55.0%
CTGCTGCTAGAGGAGGGAAT+TGG + chr4_2:67839200-67839219 Msa0617370:CDS 55.0%
GTGTTAATTGGGCCGCGAGA+CGG + chr4_2:67840694-67840713 Msa0617370:CDS 55.0%
! TCCGGACCAATAGATGGTGG+GGG + chr4_2:67841062-67841081 Msa0617370:CDS 55.0%
ACCCCCACCATCTATTGGTC+CGG - chr4_2:67841066-67841085 None:intergenic 55.0%
TGGGTACCCCCACCATCTAT+TGG - chr4_2:67841071-67841090 None:intergenic 55.0%
! CTGGCTGGTTGCAGGCTGAA+TGG - chr4_2:67838351-67838370 None:intergenic 60.0%
CCTGTGCTCTCCCAACGTAG+AGG - chr4_2:67838650-67838669 None:intergenic 60.0%
! CCTCTACGTTGGGAGAGCAC+AGG + chr4_2:67838647-67838666 Msa0617370:CDS 60.0%
! GGGAGAGCACAGGAGACCAA+TGG + chr4_2:67838657-67838676 Msa0617370:CDS 60.0%
TCCCTCCTCTAGCAGCAGCA+TGG - chr4_2:67839198-67839217 None:intergenic 60.0%
TTCAGCAGCTGGAAGAGGCC+AGG + chr4_2:67839306-67839325 Msa0617370:CDS 60.0%
AGCTGGAAGAGGCCAGGTTG+AGG + chr4_2:67839312-67839331 Msa0617370:CDS 60.0%
GGACTGCCCTCTTGCTCTTC+CGG + chr4_2:67841044-67841063 Msa0617370:CDS 60.0%
TGGAGCACAAGGGCAGGCTT+TGG + chr4_2:67841151-67841170 Msa0617370:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 67838299 67841465 67838299 ID=Msa0617370;Name=Msa0617370
chr4_2 mRNA 67838299 67841465 67838299 ID=Msa0617370-mRNA-1;Parent=Msa0617370;Name=Msa0617370-mRNA-1;_AED=0.11;_eAED=0.11;_QI=132|1|1|1|0.5|0.33|3|227|659
chr4_2 exon 67838299 67838422 67838299 ID=Msa0617370-mRNA-1:exon:19419;Parent=Msa0617370-mRNA-1
chr4_2 exon 67838621 67839333 67838621 ID=Msa0617370-mRNA-1:exon:19420;Parent=Msa0617370-mRNA-1
chr4_2 exon 67839964 67841465 67839964 ID=Msa0617370-mRNA-1:exon:19421;Parent=Msa0617370-mRNA-1
chr4_2 five_prime_UTR 67838299 67838422 67838299 ID=Msa0617370-mRNA-1:five_prime_utr;Parent=Msa0617370-mRNA-1
chr4_2 five_prime_UTR 67838621 67838628 67838621 ID=Msa0617370-mRNA-1:five_prime_utr;Parent=Msa0617370-mRNA-1
chr4_2 CDS 67838629 67839333 67838629 ID=Msa0617370-mRNA-1:cds;Parent=Msa0617370-mRNA-1
chr4_2 CDS 67839964 67841238 67839964 ID=Msa0617370-mRNA-1:cds;Parent=Msa0617370-mRNA-1
chr4_2 three_prime_UTR 67841239 67841465 67841239 ID=Msa0617370-mRNA-1:three_prime_utr;Parent=Msa0617370-mRNA-1
Gene Sequence

>Msa0617370

ATGGCACCTTCTTACTTTCCTCTACGTTGGGAGAGCACAGGAGACCAATGGTGGTATGCAACACCTATTGATTTAGCAGCTGCAAATGGTCTCTATGATTTAGTAGTTGAGCTTCTCCATCATGATACAAATCTTCTCATTAAGCTCACTTCTCTTTGTCGAATTCGTCGACTAGAAACTGTGTGGGATGATGAAGCTCAGTTTGAAGATGTTGCAAAGTGTAGGTCTCATGTTGCAAAGAAACTTCTGCTTGAGTGTGAAGAAACAGCAACAGGAACAAACTCTCTCATTCGTGGTGGATATGGTGGATGGCTTTTGTATACTGCTGCTTCTGCTGGTGATTTGGAGTTTGTTTATGAATTGTTGAGAAGAGATTCTTTGTTGGTTTTTGGTGAAGGAGAGTATGGTGTTACTGATATGTTTTATGCTGCAGCTAGGAGTAAGAATTCTGAGGTATTCAACATGATTCTTGATTTTGCTCTCTTAGGAAAAGATTGTGGTATTGTTGAATTGGATGAAGGTGGTGGTGGTGGAGATTTCAAGAGGGAGATAATGAATAGGGCTATCCATGCTGCTGCTAGAGGAGGGAATTGGGAAATACTTAAGAAGCAGCTTCTTTTAGTAAGTGCTTCTCAGATTTTGTCTTATAGAGATGTTCAAGGATGTACTGTCTTGCATTCAGCAGCTGGAAGAGGCCAGGTTGAGGTGGTTAGAAATCTAATTGCATCATCACCTGATATTGTAAACTCTACTGATGCACAAGGTAATGCAGCATTACATGTGGCTTCTTACAGAGGTTACCTTCATGTGGTAGAGATTCTAATTCAAGCATCTCCCTCACTAACAAAGTTAACCAATCACAATGGAGACACTTTTCTTCATATGGCAGTGTATGGTTTCATAAATCCTGGTTTCTGCAGACTAGACAAGCACACTGAGCTCATGAATGAGTTATTACTAACCGAAAAGGTTGCGAACATAAAGGACATAATCAATGTCATGAACAATGTTGGGAGAACAGCAATTCATGTAGCTGTGATTCATGATGTCAAGTGTGATGTACTTGAATCAATGATGTCTGTTGCATCAATCGATCTTAACATTCGCGACGCAGATGGAATGACACCTCTTGATTATTTGAAAAAAAGACCAAGATCAAGATCTTCTGAATTATTAATCAAGAAATTAATTTCATCTGTAAGTTTCTATAATCGTGAAGATTATATGACAAGAAACACAATTGTGACTCATTTGAAAACTCGTCATGGTATTGGAGGTAGTCCCGGAACTTCATTTAGAATATCAGATTCTAAGATACTCTTACACACATGCAATGAGAATGATCAAGCAAGTGTAGAATCAAATTCATGCTCAATTGAAGTAGACAGTAATTATGAGTCAGCTGAAAATTCCTCATGTAACAGCAAGACTAGTGGTGTTAATTGGGCCGCGAGACGGTTAATGAATCTTCTCAAGTGGCGTAGAAGAAGAGAGACAAAAGAAACCTTAGAATTTGAAGACGATGATTCTGTTAATAATTCTGTAAGTTCAAGGAAAAATGATTTGGAAGAATTTCCAATCTCATTAAGGCAAAGATACTCAAAACAGTGCTCTCTTCCAAACAACAAAAGAACACTATCTATAAGGACTTTACTTCCAACTCCATCTGCAAAAAAATATTTCACAGCAGGCCTAATGCAAGGTGTAATTAAGGTAAAGACACAAAAAGAAGGGTCTAATTTGTCTCATTCTTCAAACACTAAGCACAAACATGTTGATACACTGGGACTGCCCTCTTGCTCTTCCGGACCAATAGATGGTGGGGGTACCCAACAGTTGAACTATAAGGAGAGAAACTATAATAAGAAATTGATGAACAAGTATTTTTCTTTTGGAGCACAAGGGCAGGCTTTGGAAGATGCAAACACTTGCTCAATGTCAAATCACAGTTCTAAGTGTTTCAGTTATTTCGTTGCATAA

Protein sequence

>Msa0617370

MAPSYFPLRWESTGDQWWYATPIDLAAANGLYDLVVELLHHDTNLLIKLTSLCRIRRLETVWDDEAQFEDVAKCRSHVAKKLLLECEETATGTNSLIRGGYGGWLLYTAASAGDLEFVYELLRRDSLLVFGEGEYGVTDMFYAAARSKNSEVFNMILDFALLGKDCGIVELDEGGGGGDFKREIMNRAIHAAARGGNWEILKKQLLLVSASQILSYRDVQGCTVLHSAAGRGQVEVVRNLIASSPDIVNSTDAQGNAALHVASYRGYLHVVEILIQASPSLTKLTNHNGDTFLHMAVYGFINPGFCRLDKHTELMNELLLTEKVANIKDIINVMNNVGRTAIHVAVIHDVKCDVLESMMSVASIDLNIRDADGMTPLDYLKKRPRSRSSELLIKKLISSVSFYNREDYMTRNTIVTHLKTRHGIGGSPGTSFRISDSKILLHTCNENDQASVESNSCSIEVDSNYESAENSSCNSKTSGVNWAARRLMNLLKWRRRRETKETLEFEDDDSVNNSVSSRKNDLEEFPISLRQRYSKQCSLPNNKRTLSIRTLLPTPSAKKYFTAGLMQGVIKVKTQKEGSNLSHSSNTKHKHVDTLGLPSCSSGPIDGGGTQQLNYKERNYNKKLMNKYFSFGAQGQALEDANTCSMSNHSSKCFSYFVA*