Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704880 | XP_024629481.1 | 93.687 | 792 | 17 | 8 | 1 | 788 | 1 | 763 | 0.0 | 1471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704880 | sp|O94481|TFC5_SCHPO | 34.109 | 129 | 70 | 4 | 562 | 690 | 321 | 434 | 2.29e-13 | 77.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704880 | A0A396GS65 | 93.687 | 792 | 17 | 8 | 1 | 788 | 1 | 763 | 0.0 | 1471 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0704880 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054440 | Msa0704880 | 0.816683 | 4.873132e-52 | -8.615850e-47 |
| Msa0605000 | Msa0704880 | 0.819604 | 1.064511e-52 | -8.615850e-47 |
| Msa0619210 | Msa0704880 | 0.909115 | 8.134150e-82 | -8.615850e-47 |
| Msa0685140 | Msa0704880 | 0.824447 | 8.033566e-54 | -8.615850e-47 |
| Msa0704880 | Msa0711780 | 0.805878 | 1.079001e-49 | -8.615850e-47 |
| Msa0704880 | Msa0830540 | 0.809903 | 1.503320e-50 | -8.615850e-47 |
| Msa0704880 | Msa0945440 | 0.818744 | 1.670959e-52 | -8.615850e-47 |
| Msa0704880 | Msa1390740 | 0.900397 | 7.632074e-78 | -8.615850e-47 |
| Msa0127020 | Msa0704880 | 0.806949 | 6.417330e-50 | -8.615850e-47 |
| Msa0146770 | Msa0704880 | 0.812819 | 3.500127e-51 | -8.615850e-47 |
| Msa0169280 | Msa0704880 | 0.805689 | 1.182387e-49 | -8.615850e-47 |
| Msa0422840 | Msa0704880 | 0.809832 | 1.556780e-50 | -8.615850e-47 |
| Msa0422920 | Msa0704880 | 0.805195 | 1.500892e-49 | -8.615850e-47 |
| Msa0542090 | Msa0704880 | 0.816426 | 5.563663e-52 | -8.615850e-47 |
| Msa0542130 | Msa0704880 | 0.816398 | 5.645508e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704880 | MtrunA17_Chr8g0383101 | 93.687 | 792 | 17 | 8 | 1 | 788 | 1 | 763 | 0.0 | 1471 |
| Msa0704880 | MtrunA17_Chr4g0033581 | 53.695 | 406 | 149 | 11 | 390 | 788 | 132 | 505 | 2.05e-100 | 320 |
| Msa0704880 | MtrunA17_Chr4g0033581 | 35.838 | 173 | 68 | 7 | 3 | 171 | 2 | 135 | 8.33e-12 | 68.6 |
| Msa0704880 | MtrunA17_Chr8g0383111 | 67.826 | 115 | 37 | 0 | 384 | 498 | 46 | 160 | 9.08e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704880 | AT4G39160.1 | 29.078 | 564 | 300 | 18 | 189 | 709 | 15 | 521 | 8.26e-45 | 171 |
| Msa0704880 | AT4G39160.3 | 29.078 | 564 | 300 | 18 | 189 | 709 | 15 | 521 | 8.26e-45 | 171 |
| Msa0704880 | AT4G39160.2 | 29.078 | 564 | 300 | 18 | 189 | 709 | 15 | 521 | 1.19e-44 | 171 |
Find 174 sgRNAs with CRISPR-Local
Find 409 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATATTCCTAACCCTTTC+CGG | 0.169829 | 4_4:-77394360 | None:intergenic |
| TGTTGATGCGCTTGTCTTCT+TGG | 0.180256 | 4_4:-77395810 | None:intergenic |
| TGAATAAGTGGACGAGTTTC+CGG | 0.196625 | 4_4:-77392945 | None:intergenic |
| CCGATTCCTCTTCTCATTTC+CGG | 0.203819 | 4_4:+77392973 | Msa0704880:five_prime_UTR |
| CTTCTATTATCTTCAGAAAA+TGG | 0.204672 | 4_4:-77394633 | None:intergenic |
| GAAGAAATCAGTGGCTAAAA+AGG | 0.211844 | 4_4:+77395841 | Msa0704880:CDS |
| CATGACGCAATTAATTAATT+AGG | 0.231819 | 4_4:-77393063 | None:intergenic |
| TCCTAACCCTTTCCGGTTCC+AGG | 0.250680 | 4_4:-77394353 | None:intergenic |
| ATCAACGAACAATACCTATT+AGG | 0.275169 | 4_4:+77396087 | Msa0704880:CDS |
| CCCTTTCCGGTTCCAGGATC+AGG | 0.297732 | 4_4:-77394347 | None:intergenic |
| TCTAGGTCGTGGCTTAATCT+TGG | 0.307370 | 4_4:-77394462 | None:intergenic |
| GACCCTCCTTATGTTATTGA+TGG | 0.314436 | 4_4:+77395740 | Msa0704880:CDS |
| ATTGAATTACCAGTCTTTCA+TGG | 0.319869 | 4_4:+77397416 | Msa0704880:CDS |
| TGGATCAATGCCAGATTTCA+TGG | 0.322835 | 4_4:-77395356 | None:intergenic |
| ATAACTTTGATTTGAAAGTT+TGG | 0.329409 | 4_4:+77399188 | Msa0704880:three_prime_UTR |
| TCAGCCAATGTGGGACTATC+TGG | 0.334761 | 4_4:-77395418 | None:intergenic |
| ACAGAAACAAAATTCTAATA+AGG | 0.334895 | 4_4:+77397945 | Msa0704880:CDS |
| GCGGGCTTCAAAAGCGCTTC+AGG | 0.341307 | 4_4:+77394128 | Msa0704880:CDS |
| TCAACGAACAATACCTATTA+GGG | 0.342822 | 4_4:+77396088 | Msa0704880:CDS |
| GATGCCTCAGATTTAATGAT+AGG | 0.358895 | 4_4:+77397985 | Msa0704880:CDS |
| ATATAGGCTATTAGGCAGTT+TGG | 0.359903 | 4_4:+77397620 | Msa0704880:intron |
| AGTAAAATAATATCCCTAAT+AGG | 0.364611 | 4_4:-77396101 | None:intergenic |
| TCTTGACAGCAACAAGAGTT+TGG | 0.369143 | 4_4:+77394070 | Msa0704880:CDS |
| ACTCTGAAGGCATAGCATTC+AGG | 0.370180 | 4_4:-77394689 | None:intergenic |
| TTGTAACCTCAAATCTCAAA+TGG | 0.372403 | 4_4:-77399002 | None:intergenic |
| CAAATGGGACAATTGTAAAA+TGG | 0.378705 | 4_4:-77398986 | None:intergenic |
| GGTGGTTTGGGCTTAGCCTT+AGG | 0.384423 | 4_4:-77393245 | None:intergenic |
| AATGAACCTTCCCCATTTGT+AGG | 0.385631 | 4_4:-77394047 | None:intergenic |
| CATAAAATATCTTCTATTGC+TGG | 0.387802 | 4_4:+77395611 | Msa0704880:CDS |
| AAAGACTGGTAATTCAATAA+AGG | 0.392051 | 4_4:-77397411 | None:intergenic |
| TAAAGATCAAGAAGATTCTA+TGG | 0.395924 | 4_4:+77398787 | Msa0704880:CDS |
| AGTGTTAGTGTACCTTTGAT+TGG | 0.396209 | 4_4:-77396278 | None:intergenic |
| TCAATGGGGCAGTCAGGATC+AGG | 0.398869 | 4_4:-77395310 | None:intergenic |
| TTTGTCAAGCCTTCATGCCT+TGG | 0.399449 | 4_4:-77395391 | None:intergenic |
| GCTTCTGCTTCTGCTTCATC+TGG | 0.399801 | 4_4:+77394506 | Msa0704880:CDS |
| TGTGCGCAAACCTTAGTTCC+AGG | 0.400334 | 4_4:-77398027 | None:intergenic |
| AACAAAGAACTGCCTACAAA+TGG | 0.403333 | 4_4:+77394035 | Msa0704880:CDS |
| AGTGATGTCCTCCCTGATCC+TGG | 0.404496 | 4_4:+77394335 | Msa0704880:CDS |
| TCGTCAGATTGCTCTGGAAC+TGG | 0.405106 | 4_4:-77398815 | None:intergenic |
| CTAGGTCGTGGCTTAATCTT+GGG | 0.405320 | 4_4:-77394461 | None:intergenic |
| CAAACCTTAGTTCCAGGTGT+TGG | 0.407219 | 4_4:-77398021 | None:intergenic |
| CTTAAATCTTTCAATGTGAA+TGG | 0.409452 | 4_4:+77395104 | Msa0704880:CDS |
| AGCATTATGAGAATCATGTT+TGG | 0.410582 | 4_4:-77393372 | None:intergenic |
| ACAAGGCACCTAGGGGAAAA+TGG | 0.411092 | 4_4:+77397439 | Msa0704880:CDS |
| GATTATCAATCCATGAAATC+TGG | 0.414632 | 4_4:+77395346 | Msa0704880:CDS |
| CATAGTGGACAAGGCTCTGC+TGG | 0.417669 | 4_4:+77396049 | Msa0704880:intron |
| AGAGGTTGCAACAGCTGAGC+AGG | 0.420001 | 4_4:+77398745 | Msa0704880:CDS |
| TGCCTTGGAATTTCAGATGT+TGG | 0.423028 | 4_4:-77395376 | None:intergenic |
| GCATTATGAGAATCATGTTT+GGG | 0.424036 | 4_4:-77393371 | None:intergenic |
| CAAAAGTAGGTCGGAAATAC+AGG | 0.424081 | 4_4:+77395163 | Msa0704880:CDS |
| GAGAGGCAGGTTTGCGCCTA+AGG | 0.424149 | 4_4:+77393229 | Msa0704880:CDS |
| AAACCTTAGTTCCAGGTGTT+GGG | 0.426302 | 4_4:-77398020 | None:intergenic |
| TTAATTAGGTGTCACGCAAT+TGG | 0.432170 | 4_4:-77393049 | None:intergenic |
| ACAAAGAACTGCCTACAAAT+GGG | 0.438146 | 4_4:+77394036 | Msa0704880:CDS |
| ACATTGAAAGATTTAAGATC+TGG | 0.441714 | 4_4:-77395098 | None:intergenic |
| GTCCTCCCTGATCCTGGAAC+CGG | 0.446592 | 4_4:+77394341 | Msa0704880:CDS |
| CCGGAAATGAGAAGAGGAAT+CGG | 0.449413 | 4_4:-77392973 | None:intergenic |
| CCTGATCCTGGAACCGGAAA+GGG | 0.454744 | 4_4:+77394347 | Msa0704880:CDS |
| GGACCCAACACCTGGAACTA+AGG | 0.455739 | 4_4:+77398017 | Msa0704880:CDS |
| ACTGATTTACCAAAGCTAGA+AGG | 0.460360 | 4_4:-77394741 | None:intergenic |
| GCCATGAATAATCGTGGAAA+AGG | 0.463451 | 4_4:+77397749 | Msa0704880:CDS |
| ACATTGTCAATGGGGCAGTC+AGG | 0.469696 | 4_4:-77395316 | None:intergenic |
| TGCAACAGCTGAGCAGGAGC+AGG | 0.470277 | 4_4:+77398751 | Msa0704880:CDS |
| ATTGCTGGTGTGGAGGATAA+AGG | 0.470324 | 4_4:+77395626 | Msa0704880:CDS |
| ATTGTCCCATTTGAGATTTG+AGG | 0.471712 | 4_4:+77398996 | Msa0704880:three_prime_UTR |
| TCATCATAGACATTGTCAAT+GGG | 0.474029 | 4_4:-77395325 | None:intergenic |
| ACATTCTCTACAGCATTAGC+AGG | 0.476336 | 4_4:-77393966 | None:intergenic |
| GTATCTACTACTGACTCAAT+AGG | 0.477186 | 4_4:+77394008 | Msa0704880:CDS |
| TCATTGAATGAGGCTGTTAA+CGG | 0.477993 | 4_4:+77395704 | Msa0704880:CDS |
| GAGAATGAGGACCCAACACC+TGG | 0.480041 | 4_4:+77398009 | Msa0704880:CDS |
| AAATTACAATCACGCGCTAC+CGG | 0.481675 | 4_4:-77392992 | None:intergenic |
| TAAAATGAGATCAAAATTCG+TGG | 0.483463 | 4_4:-77398915 | None:intergenic |
| CAGTATCGTCTTGCTGCAAA+AGG | 0.489581 | 4_4:-77395441 | None:intergenic |
| TTCTGAAGATAATAGAAGCT+TGG | 0.493783 | 4_4:+77394638 | Msa0704880:CDS |
| ATCATCATAGACATTGTCAA+TGG | 0.494759 | 4_4:-77395326 | None:intergenic |
| CGGAAATGAGAAGAGGAATC+GGG | 0.500025 | 4_4:-77392972 | None:intergenic |
| ATTCTCAACCATGATGCAAC+TGG | 0.501051 | 4_4:+77394888 | Msa0704880:CDS |
| TGTAACCTCAAATCTCAAAT+GGG | 0.501769 | 4_4:-77399001 | None:intergenic |
| AACCATGATGCAACTGGTAC+AGG | 0.505460 | 4_4:+77394894 | Msa0704880:CDS |
| CTTGATCTTTAACATTGATG+TGG | 0.506223 | 4_4:-77398775 | None:intergenic |
| GGCTAATGATGATTCAGAAA+AGG | 0.506523 | 4_4:+77395889 | Msa0704880:CDS |
| TCATCTCCATCAATAACATA+AGG | 0.510363 | 4_4:-77395746 | None:intergenic |
| TCACTATCGTCAGATTGCTC+TGG | 0.510890 | 4_4:-77398821 | None:intergenic |
| CTTGTCTGCGGAAATCGAGC+TGG | 0.511468 | 4_4:+77394304 | Msa0704880:CDS |
| TAGCATTCAGGAAGTCAGAA+TGG | 0.511956 | 4_4:-77394677 | None:intergenic |
| TTTCATGGACAAGGCACCTA+GGG | 0.515232 | 4_4:+77397431 | Msa0704880:CDS |
| GACCTGCCGGAAAACGAGGC+CGG | 0.515767 | 4_4:+77392911 | Msa0704880:five_prime_UTR |
| AATAAGGAAGAAGATACTGC+TGG | 0.517268 | 4_4:+77397961 | Msa0704880:CDS |
| ATGCCTCAGATTTAATGATA+GGG | 0.518508 | 4_4:+77397986 | Msa0704880:CDS |
| CCCTGATCCTGGAACCGGAA+AGG | 0.518602 | 4_4:+77394346 | Msa0704880:CDS |
| TTGCACTGTTCTCGACCTGC+CGG | 0.519763 | 4_4:+77392898 | Msa0704880:five_prime_UTR |
| GCAGAAGCAGAAGCAGTAGC+TGG | 0.523053 | 4_4:-77394497 | None:intergenic |
| GTGCCTTGTCCATGAAAGAC+TGG | 0.528971 | 4_4:-77397425 | None:intergenic |
| ATGGCATCAGTTAACAGTAA+AGG | 0.533326 | 4_4:-77397731 | None:intergenic |
| TTTAATGATAGGGGAGAATG+AGG | 0.536462 | 4_4:+77397996 | Msa0704880:CDS |
| CCTTTCCGGTTCCAGGATCA+GGG | 0.543738 | 4_4:-77394346 | None:intergenic |
| TAGAGATGAATTTAGAGACC+TGG | 0.547077 | 4_4:+77397347 | Msa0704880:CDS |
| GCTGATATCGATGTCAATAA+CGG | 0.547205 | 4_4:+77393392 | Msa0704880:CDS |
| CTGCAAAAGGTCAGCCAATG+TGG | 0.547743 | 4_4:-77395428 | None:intergenic |
| AGCATTCAGGAAGTCAGAAT+GGG | 0.548782 | 4_4:-77394676 | None:intergenic |
| TGCAGAACATAAGGAGCGGT+TGG | 0.551127 | 4_4:+77396124 | Msa0704880:CDS |
| AATATCTTCTATTGCTGGTG+TGG | 0.552691 | 4_4:+77395616 | Msa0704880:CDS |
| GTGTACCTTTGATTGGTGGA+AGG | 0.552725 | 4_4:-77396271 | None:intergenic |
| GTTTCCGGCGAGCGAAACTC+CGG | 0.554807 | 4_4:-77392930 | None:intergenic |
| CTTTCATGGACAAGGCACCT+AGG | 0.554899 | 4_4:+77397430 | Msa0704880:CDS |
| CACCTGTACCAGTTGCATCA+TGG | 0.562328 | 4_4:-77394896 | None:intergenic |
| TGGCTCGATCATCATCATCC+AGG | 0.563395 | 4_4:-77397365 | None:intergenic |
| TCTGAAATTCCAAGGCATGA+AGG | 0.563472 | 4_4:+77395382 | Msa0704880:CDS |
| AGAACATAAGGAGCGGTTGG+CGG | 0.564104 | 4_4:+77396127 | Msa0704880:CDS |
| ATCTTCTATTGCTGGTGTGG+AGG | 0.566330 | 4_4:+77395619 | Msa0704880:CDS |
| CTAATTAATTAATTGCGTCA+TGG | 0.572761 | 4_4:+77393064 | Msa0704880:exon |
| GTTAGTGTACCTTTGATTGG+TGG | 0.573797 | 4_4:-77396275 | None:intergenic |
| ATCCAACATCTGAAATTCCA+AGG | 0.574184 | 4_4:+77395374 | Msa0704880:CDS |
| CTCCCCTATCATTAAATCTG+AGG | 0.577536 | 4_4:-77397989 | None:intergenic |
| GAATCGGGAAAATGAATAAG+TGG | 0.579516 | 4_4:-77392957 | None:intergenic |
| TCTCCATCAATAACATAAGG+AGG | 0.580123 | 4_4:-77395743 | None:intergenic |
| TCGTGAACTGCAGACTCTGA+AGG | 0.582141 | 4_4:-77394702 | None:intergenic |
| AAAATGAGATCAAGTGCAAG+AGG | 0.583327 | 4_4:-77399047 | None:intergenic |
| CAGGATACGATGGCAAAAGT+AGG | 0.587039 | 4_4:+77395150 | Msa0704880:CDS |
| TGCCTCAGATTTAATGATAG+GGG | 0.588626 | 4_4:+77397987 | Msa0704880:CDS |
| TGAGTTTGGAGAAGTGCGAG+AGG | 0.590260 | 4_4:+77394196 | Msa0704880:CDS |
| GAGGCCGGAGTTTCGCTCGC+CGG | 0.590324 | 4_4:+77392926 | Msa0704880:five_prime_UTR |
| GTCATCGAGTGATTCTAGCC+CGG | 0.591218 | 4_4:-77394865 | None:intergenic |
| CTTTGGTAAATCAGTTGCAG+AGG | 0.593038 | 4_4:+77394749 | Msa0704880:CDS |
| TCTCGACCTGCCGGAAAACG+AGG | 0.593497 | 4_4:+77392907 | Msa0704880:five_prime_UTR |
| GCTGGTGTATTGCTGACTCT+AGG | 0.593908 | 4_4:-77394479 | None:intergenic |
| CAATCTGACGATAGTGACGA+TGG | 0.595092 | 4_4:+77398827 | Msa0704880:CDS |
| AATTAAGTTGAAGTACAAGA+AGG | 0.595648 | 4_4:+77397694 | Msa0704880:CDS |
| TACAAAATAATGAAGACGCA+TGG | 0.600991 | 4_4:+77398852 | Msa0704880:CDS |
| TTTCTTCGTCGAGATGCATG+GGG | 0.601698 | 4_4:-77395938 | None:intergenic |
| AAACACCTTCCACCAATCAA+AGG | 0.604763 | 4_4:+77396266 | Msa0704880:CDS |
| AAGAGACATTATAAATATCG+TGG | 0.604919 | 4_4:-77399152 | None:intergenic |
| CAATAACATAAGGAGGGTCG+AGG | 0.606753 | 4_4:-77395736 | None:intergenic |
| ATAAAGGTGGTAAAACCTCA+AGG | 0.609003 | 4_4:+77395642 | Msa0704880:CDS |
| ATCTTTCAATGTGAATGGCG+CGG | 0.609959 | 4_4:+77395109 | Msa0704880:CDS |
| ACTGATGCCATGAATAATCG+TGG | 0.614136 | 4_4:+77397743 | Msa0704880:CDS |
| GGCTGATGCTAATTATGAAG+AGG | 0.617871 | 4_4:+77397299 | Msa0704880:CDS |
| AGAGACATTATAAATATCGT+GGG | 0.621493 | 4_4:-77399151 | None:intergenic |
| CTCCATCAATAACATAAGGA+GGG | 0.625247 | 4_4:-77395742 | None:intergenic |
| TGCAAAAGGTCAGCCAATGT+GGG | 0.626313 | 4_4:-77395427 | None:intergenic |
| TTGGTGGAAGGTGTTTGCGA+AGG | 0.627136 | 4_4:-77396259 | None:intergenic |
| TTCTTGTATCTGAAACAAGT+CGG | 0.631555 | 4_4:+77392873 | Msa0704880:five_prime_UTR |
| CAATGGGGCAGTCAGGATCA+GGG | 0.632141 | 4_4:-77395309 | None:intergenic |
| CAAAGAACTGCCTACAAATG+GGG | 0.632541 | 4_4:+77394037 | Msa0704880:CDS |
| TTATGTTCAGGTCTTGTCTG+CGG | 0.632639 | 4_4:+77394292 | Msa0704880:intron |
| TTACCAGTCTTTCATGGACA+AGG | 0.633575 | 4_4:+77397422 | Msa0704880:CDS |
| TAGTTGAGATTCTTTGTGAG+TGG | 0.635988 | 4_4:-77393342 | None:intergenic |
| TTCTCCAGATAGTCCCACAT+TGG | 0.636578 | 4_4:+77395414 | Msa0704880:CDS |
| GTATTGCTGACTCTAGGTCG+TGG | 0.639699 | 4_4:-77394473 | None:intergenic |
| GAACTGCCTACAAATGGGGA+AGG | 0.640951 | 4_4:+77394041 | Msa0704880:CDS |
| GCGCTACCGGAAATGAGAAG+AGG | 0.643266 | 4_4:-77392979 | None:intergenic |
| TTCAGGAAGTCAGAATGGGA+AGG | 0.643999 | 4_4:-77394672 | None:intergenic |
| ATACGATGGCAAAAGTAGGT+CGG | 0.644577 | 4_4:+77395154 | Msa0704880:CDS |
| TTTGTCCTTCCAGGATACGA+TGG | 0.645335 | 4_4:+77395140 | Msa0704880:CDS |
| TCAGGGAGGACATCACTGAA+AGG | 0.647641 | 4_4:-77394329 | None:intergenic |
| AATATCTATATGCAGTGATG+GGG | 0.653102 | 4_4:+77397245 | Msa0704880:intron |
| TCAGAGTCTGCAGTTCACGA+TGG | 0.663364 | 4_4:+77394705 | Msa0704880:CDS |
| CATTCTCTACAGCATTAGCA+GGG | 0.663600 | 4_4:-77393965 | None:intergenic |
| AATCTGACGATAGTGACGAT+GGG | 0.666315 | 4_4:+77398828 | Msa0704880:CDS |
| GCTTCAGGCGACATTTACAA+TGG | 0.666517 | 4_4:+77394143 | Msa0704880:CDS |
| CATCATAGACATTGTCAATG+GGG | 0.666547 | 4_4:-77395324 | None:intergenic |
| TACTTGCAGAACATAAGGAG+CGG | 0.669846 | 4_4:+77396120 | Msa0704880:CDS |
| CTAGAGATTAGCCTAAACGC+GGG | 0.676355 | 4_4:+77394110 | Msa0704880:CDS |
| TTTCAATGTGAATGGCGCGG+AGG | 0.676830 | 4_4:+77395112 | Msa0704880:CDS |
| TTCTTCGTCGAGATGCATGG+GGG | 0.683443 | 4_4:-77395937 | None:intergenic |
| ACTAGAGATTAGCCTAAACG+CGG | 0.695442 | 4_4:+77394109 | Msa0704880:CDS |
| AAGTTCAAAGAAGAAATCAG+TGG | 0.701783 | 4_4:+77395832 | Msa0704880:CDS |
| TTCATGGACAAGGCACCTAG+GGG | 0.703716 | 4_4:+77397432 | Msa0704880:CDS |
| TTCCGGTTCCAGGATCAGGG+AGG | 0.714895 | 4_4:-77394343 | None:intergenic |
| GCTGGTGTGGAGGATAAAGG+TGG | 0.724198 | 4_4:+77395629 | Msa0704880:CDS |
| CAAGAAGAGCAAAGCCACAG+CGG | 0.728849 | 4_4:-77392856 | None:intergenic |
| AGAGAATGTATTGAATAATG+CGG | 0.729081 | 4_4:+77393980 | Msa0704880:CDS |
| TTACAAAGTCAAACTCAGTG+AGG | 0.752683 | 4_4:+77399019 | Msa0704880:three_prime_UTR |
| AAATGACGATGAGAACGACG+TGG | 0.754814 | 4_4:+77395778 | Msa0704880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAACTTATTTGATAAAT+AGG | - | chr4_4:77394595-77394614 | None:intergenic | 10.0% |
| !!! | ATAATTTTTTGGTATAAAAA+TGG | + | chr4_4:77395247-77395266 | Msa0704880:intron | 10.0% |
| !!! | TAATTTTTTGGTATAAAAAT+GGG | + | chr4_4:77395248-77395267 | Msa0704880:intron | 10.0% |
| !!! | ACTTTTCATTTTTTAAATAT+AGG | + | chr4_4:77397604-77397623 | Msa0704880:intron | 10.0% |
| !!! | ATTTGTGTATTTTTTTTTTA+TGG | + | chr4_4:77398376-77398395 | Msa0704880:intron | 10.0% |
| !! | TAAAAATCAATACTATTATA+AGG | + | chr4_4:77398414-77398433 | Msa0704880:intron | 10.0% |
| !!! | TATTATTTTATATCACTAAA+TGG | - | chr4_4:77398894-77398913 | None:intergenic | 10.0% |
| !!! | ATCTCATTTTAAAAAAAAAT+GGG | + | chr4_4:77398927-77398946 | Msa0704880:three_prime_UTR | 10.0% |
| !!! | TTAATCAATGTATTGAATTT+TGG | + | chr4_4:77393185-77393204 | Msa0704880:intron | 15.0% |
| !!! | ATTTTTTTGGCATATATTTT+AGG | - | chr4_4:77395223-77395242 | None:intergenic | 15.0% |
| !! | TAATAAAAATATAGTTTGAC+AGG | - | chr4_4:77395977-77395996 | None:intergenic | 15.0% |
| !! | AAAGTTAATATTTCGATAAA+TGG | + | chr4_4:77396714-77396733 | Msa0704880:intron | 15.0% |
| !!! | ATACATAATAATTGTCTTTT+TGG | + | chr4_4:77397545-77397564 | Msa0704880:intron | 15.0% |
| !!! | TACATAATAATTGTCTTTTT+GGG | + | chr4_4:77397546-77397565 | Msa0704880:intron | 15.0% |
| !! | GAAAAGTTAATTTATTGAAA+AGG | - | chr4_4:77397591-77397610 | None:intergenic | 15.0% |
| !!! | TTTTTTAAATATAGGCTATT+AGG | + | chr4_4:77397612-77397631 | Msa0704880:intron | 15.0% |
| !! | TGAATAAAATATATACTCTT+TGG | + | chr4_4:77397883-77397902 | Msa0704880:intron | 15.0% |
| !!! | AGATCTTTCTTTTTTTAAAT+TGG | + | chr4_4:77397912-77397931 | Msa0704880:intron | 15.0% |
| !!! | CAAAGTAAAAATGTTAATTT+TGG | - | chr4_4:77398200-77398219 | None:intergenic | 15.0% |
| !!! | CAAAATTAACATTTTTACTT+TGG | + | chr4_4:77398198-77398217 | Msa0704880:intron | 15.0% |
| !!! | TATAATTATCTTTATTTGCT+AGG | - | chr4_4:77398608-77398627 | None:intergenic | 15.0% |
| !! | CAAATAAAGATAATTATAAG+TGG | + | chr4_4:77398610-77398629 | Msa0704880:intron | 15.0% |
| !!! | GATCTCATTTTAAAAAAAAA+TGG | + | chr4_4:77398926-77398945 | Msa0704880:three_prime_UTR | 15.0% |
| !!! | TCTCATTTTAAAAAAAAATG+GGG | + | chr4_4:77398928-77398947 | Msa0704880:three_prime_UTR | 15.0% |
| !! | TTTATTTCCATAAACTCTAT+GGG | - | chr4_4:77393485-77393504 | None:intergenic | 20.0% |
| !! | ATTTATTTCCATAAACTCTA+TGG | - | chr4_4:77393486-77393505 | None:intergenic | 20.0% |
| !! | TATGTATATGTTTGATTCTT+TGG | - | chr4_4:77393860-77393879 | None:intergenic | 20.0% |
| !!! | TACAGATAATTTATCTTTTC+AGG | - | chr4_4:77394411-77394430 | None:intergenic | 20.0% |
| !! | AAAATTACAAATCATCTACA+CGG | - | chr4_4:77395540-77395559 | None:intergenic | 20.0% |
| !!! | AAGTATTTTCATTTTCATAG+TGG | + | chr4_4:77396034-77396053 | Msa0704880:intron | 20.0% |
| !! | AGTAAAATAATATCCCTAAT+AGG | - | chr4_4:77396104-77396123 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTGTTTTTGTTGT+TGG | + | chr4_4:77396604-77396623 | Msa0704880:intron | 20.0% |
| !!! | ATTTTCATCGTTCAAAAAAT+TGG | + | chr4_4:77396763-77396782 | Msa0704880:intron | 20.0% |
| !! | TATGAATACCAAAAAAAGAA+GGG | - | chr4_4:77397069-77397088 | None:intergenic | 20.0% |
| !!! | ACATAATAATTGTCTTTTTG+GGG | + | chr4_4:77397547-77397566 | Msa0704880:intron | 20.0% |
| !! | AGTTAATTTATTGAAAAGGA+CGG | - | chr4_4:77397587-77397606 | None:intergenic | 20.0% |
| !! | GGTTAATTATAAGTTTAGAA+TGG | + | chr4_4:77397816-77397835 | Msa0704880:intron | 20.0% |
| !!! | TCTTTCTTTTTTTAAATTGG+TGG | + | chr4_4:77397915-77397934 | Msa0704880:CDS | 20.0% |
| !! | ACAGAAACAAAATTCTAATA+AGG | + | chr4_4:77397945-77397964 | Msa0704880:CDS | 20.0% |
| !!! | AAAATGTTAATTTTGGTAGA+AGG | - | chr4_4:77398193-77398212 | None:intergenic | 20.0% |
| !!! | ATTTTAAAAAAAAATGGGGA+AGG | + | chr4_4:77398932-77398951 | Msa0704880:three_prime_UTR | 20.0% |
| !!! | CTTGATCTCATTTTTTAATT+TGG | + | chr4_4:77399056-77399075 | Msa0704880:three_prime_UTR | 20.0% |
| ! | CATGACGCAATTAATTAATT+AGG | - | chr4_4:77393066-77393085 | None:intergenic | 25.0% |
| ! | CTAATTAATTAATTGCGTCA+TGG | + | chr4_4:77393064-77393083 | Msa0704880:exon | 25.0% |
| !! | TTTACATTAGTTCTTCTGAA+AGG | + | chr4_4:77393541-77393560 | Msa0704880:intron | 25.0% |
| ! | GGTGATTATATCAATGTATT+TGG | + | chr4_4:77393562-77393581 | Msa0704880:intron | 25.0% |
| ! | AATCACATGATAGATATGAA+AGG | - | chr4_4:77393923-77393942 | None:intergenic | 25.0% |
| ! | AGAGAATGTATTGAATAATG+CGG | + | chr4_4:77393980-77393999 | Msa0704880:CDS | 25.0% |
| !!! | TTACATTCAAGTTTTGAGTT+TGG | + | chr4_4:77394182-77394201 | Msa0704880:CDS | 25.0% |
| ! | AAGTTTAATTGTATAAGCTC+AGG | + | chr4_4:77394606-77394625 | Msa0704880:intron | 25.0% |
| ! | CTTCTATTATCTTCAGAAAA+TGG | - | chr4_4:77394636-77394655 | None:intergenic | 25.0% |
| !!! | TAGAATGCAGATATTTTTTC+CGG | + | chr4_4:77394846-77394865 | Msa0704880:intron | 25.0% |
| !! | ACATTGAAAGATTTAAGATC+TGG | - | chr4_4:77395101-77395120 | None:intergenic | 25.0% |
| ! | CTTAAATCTTTCAATGTGAA+TGG | + | chr4_4:77395104-77395123 | Msa0704880:CDS | 25.0% |
| ! | GTGAAAATTATGTGATTCAT+AGG | + | chr4_4:77395185-77395204 | Msa0704880:intron | 25.0% |
| ! | CATAAAATATCTTCTATTGC+TGG | + | chr4_4:77395611-77395630 | Msa0704880:CDS | 25.0% |
| !!! | TCATTCAATGAGTTTTTAGT+AGG | - | chr4_4:77395695-77395714 | None:intergenic | 25.0% |
| ! | TACTAAAAACTCATTGAATG+AGG | + | chr4_4:77395694-77395713 | Msa0704880:CDS | 25.0% |
| !! | TATTTTACTTGCAGAACATA+AGG | + | chr4_4:77396115-77396134 | Msa0704880:CDS | 25.0% |
| !! | TTGTTTCTCTATGTAGAAAA+AGG | + | chr4_4:77396228-77396247 | Msa0704880:intron | 25.0% |
| ! | GTATGAATACCAAAAAAAGA+AGG | - | chr4_4:77397070-77397089 | None:intergenic | 25.0% |
| ! | AAAATATCTATATGCAGTGA+TGG | + | chr4_4:77397243-77397262 | Msa0704880:intron | 25.0% |
| ! | AAATATCTATATGCAGTGAT+GGG | + | chr4_4:77397244-77397263 | Msa0704880:intron | 25.0% |
| !!! | AATTATGAAGAGGAGTTTTT+TGG | + | chr4_4:77397309-77397328 | Msa0704880:CDS | 25.0% |
| ! | AAAGACTGGTAATTCAATAA+AGG | - | chr4_4:77397414-77397433 | None:intergenic | 25.0% |
| !!! | AGATACTGAAAAGTTTTATG+AGG | + | chr4_4:77397470-77397489 | Msa0704880:CDS | 25.0% |
| !! | CATAATAATTGTCTTTTTGG+GGG | + | chr4_4:77397548-77397567 | Msa0704880:intron | 25.0% |
| !!! | AATTAAGTTGAAGTACAAGA+AGG | + | chr4_4:77397694-77397713 | Msa0704880:CDS | 25.0% |
| ! | GTAAGAACTTTAATAAACGA+AGG | - | chr4_4:77398230-77398249 | None:intergenic | 25.0% |
| ! | TTGCAGCAATAAAAATAACT+CGG | - | chr4_4:77398292-77398311 | None:intergenic | 25.0% |
| ! | AACAACATAACTATTAATCG+AGG | - | chr4_4:77398332-77398351 | None:intergenic | 25.0% |
| !!! | TAGTATTGATTTTTATCCAC+TGG | - | chr4_4:77398409-77398428 | None:intergenic | 25.0% |
| ! | TCACATACAATATAGTAAAG+TGG | - | chr4_4:77398558-77398577 | None:intergenic | 25.0% |
| ! | AGATAATTATAAGTGGATGT+AGG | + | chr4_4:77398617-77398636 | Msa0704880:intron | 25.0% |
| !!! | CAAATGTATCGATTTAATCA+AGG | - | chr4_4:77398647-77398666 | None:intergenic | 25.0% |
| ! | CAATATGGGATAAGAAATAT+TGG | - | chr4_4:77398684-77398703 | None:intergenic | 25.0% |
| ! | AAAATTAGCAAGGTCAATAT+GGG | - | chr4_4:77398698-77398717 | None:intergenic | 25.0% |
| ! | TAAAATTAGCAAGGTCAATA+TGG | - | chr4_4:77398699-77398718 | None:intergenic | 25.0% |
| !!! | AAGAGTCTTTAAAATTAGCA+AGG | - | chr4_4:77398708-77398727 | None:intergenic | 25.0% |
| ! | TAAAGATCAAGAAGATTCTA+TGG | + | chr4_4:77398787-77398806 | Msa0704880:CDS | 25.0% |
| ! | TAAAATGAGATCAAAATTCG+TGG | - | chr4_4:77398918-77398937 | None:intergenic | 25.0% |
| !!! | CGTGATATTTTAGTTTTTTG+CGG | + | chr4_4:77399086-77399105 | Msa0704880:three_prime_UTR | 25.0% |
| ! | AGAGACATTATAAATATCGT+GGG | - | chr4_4:77399154-77399173 | None:intergenic | 25.0% |
| ! | AAGAGACATTATAAATATCG+TGG | - | chr4_4:77399155-77399174 | None:intergenic | 25.0% |
| ! | TTCTTGTATCTGAAACAAGT+CGG | + | chr4_4:77392873-77392892 | Msa0704880:five_prime_UTR | 30.0% |
| ! | ATTGCAGATACATTCTTTTG+AGG | - | chr4_4:77393275-77393294 | None:intergenic | 30.0% |
| GCATTATGAGAATCATGTTT+GGG | - | chr4_4:77393374-77393393 | None:intergenic | 30.0% | |
| AGCATTATGAGAATCATGTT+TGG | - | chr4_4:77393375-77393394 | None:intergenic | 30.0% | |
| TTGTTATCCCATAGAGTTTA+TGG | + | chr4_4:77393475-77393494 | Msa0704880:intron | 30.0% | |
| ! | GCTTCATGTAGAATCAATTT+TGG | - | chr4_4:77393678-77393697 | None:intergenic | 30.0% |
| !! | TTTTGGTGGATATTATGTTC+AGG | + | chr4_4:77394280-77394299 | Msa0704880:intron | 30.0% |
| !!! | AATCTTGGGTTGAAACTTTT+TGG | - | chr4_4:77394450-77394469 | None:intergenic | 30.0% |
| AACTTATCATTTGTGCAAGT+GGG | - | chr4_4:77394539-77394558 | None:intergenic | 30.0% | |
| AAACTTATCATTTGTGCAAG+TGG | - | chr4_4:77394540-77394559 | None:intergenic | 30.0% | |
| ! | TTCTGAAGATAATAGAAGCT+TGG | + | chr4_4:77394638-77394657 | Msa0704880:CDS | 30.0% |
| TATCTGCATTCTATATGTGT+AGG | - | chr4_4:77394839-77394858 | None:intergenic | 30.0% | |
| !!! | AGAATGCAGATATTTTTTCC+GGG | + | chr4_4:77394847-77394866 | Msa0704880:intron | 30.0% |
| ! | TTTTGGTATAAAAATGGGAG+CGG | + | chr4_4:77395253-77395272 | Msa0704880:intron | 30.0% |
| GGTTATTATTTGTTTCAGGA+AGG | + | chr4_4:77395274-77395293 | Msa0704880:intron | 30.0% | |
| TCATCATAGACATTGTCAAT+GGG | - | chr4_4:77395328-77395347 | None:intergenic | 30.0% | |
| ATCATCATAGACATTGTCAA+TGG | - | chr4_4:77395329-77395348 | None:intergenic | 30.0% | |
| GATTATCAATCCATGAAATC+TGG | + | chr4_4:77395346-77395365 | Msa0704880:CDS | 30.0% | |
| TCATCTCCATCAATAACATA+AGG | - | chr4_4:77395749-77395768 | None:intergenic | 30.0% | |
| AAGTTCAAAGAAGAAATCAG+TGG | + | chr4_4:77395832-77395851 | Msa0704880:CDS | 30.0% | |
| AAGAAATCAGTGGCTAAAAA+GGG | + | chr4_4:77395842-77395861 | Msa0704880:CDS | 30.0% | |
| AACATCTAAAAAACGCAAGA+AGG | + | chr4_4:77395868-77395887 | Msa0704880:CDS | 30.0% | |
| !!! | TTTCATTTTCATAGTGGACA+AGG | + | chr4_4:77396040-77396059 | Msa0704880:intron | 30.0% |
| ATCAACGAACAATACCTATT+AGG | + | chr4_4:77396087-77396106 | Msa0704880:CDS | 30.0% | |
| TCAACGAACAATACCTATTA+GGG | + | chr4_4:77396088-77396107 | Msa0704880:CDS | 30.0% | |
| TTTCTCTATGTAGAAAAAGG+AGG | + | chr4_4:77396231-77396250 | Msa0704880:intron | 30.0% | |
| TTGATAGAGTTAGTTAGAGT+TGG | + | chr4_4:77396373-77396392 | Msa0704880:intron | 30.0% | |
| ! | AGAACTCTACATGTATTTTC+TGG | + | chr4_4:77396430-77396449 | Msa0704880:intron | 30.0% |
| AGTATACAAGATGTTTACAG+TGG | - | chr4_4:77396487-77396506 | None:intergenic | 30.0% | |
| ! | ATCGTTCAAAAAATTGGTTC+AGG | + | chr4_4:77396769-77396788 | Msa0704880:intron | 30.0% |
| ! | TTCAAAAAATTGGTTCAGGT+GGG | + | chr4_4:77396773-77396792 | Msa0704880:intron | 30.0% |
| AAATCTAGCAGAATCAGTTA+TGG | - | chr4_4:77396914-77396933 | None:intergenic | 30.0% | |
| AGTCAGTGAGTAAAATGTTA+GGG | + | chr4_4:77397028-77397047 | Msa0704880:intron | 30.0% | |
| TGTTAGGGGATATAAATCAA+AGG | + | chr4_4:77397043-77397062 | Msa0704880:intron | 30.0% | |
| TTGGTATTCATACATGCATT+CGG | + | chr4_4:77397077-77397096 | Msa0704880:intron | 30.0% | |
| ! | CTCAGTAGTATTGAACAAAA+AGG | + | chr4_4:77397116-77397135 | Msa0704880:intron | 30.0% |
| AATATCTATATGCAGTGATG+GGG | + | chr4_4:77397245-77397264 | Msa0704880:intron | 30.0% | |
| !! | AGTTGATGTAATCTTTTCAG+TGG | - | chr4_4:77397388-77397407 | None:intergenic | 30.0% |
| ATTGAATTACCAGTCTTTCA+TGG | + | chr4_4:77397416-77397435 | Msa0704880:CDS | 30.0% | |
| ! | TGCATAATTTTTACCATGTC+AGG | + | chr4_4:77397497-77397516 | Msa0704880:intron | 30.0% |
| !!! | TTTGATGACGTGTTTTATCA+GGG | - | chr4_4:77397676-77397695 | None:intergenic | 30.0% |
| !!! | ATTTGATGACGTGTTTTATC+AGG | - | chr4_4:77397677-77397696 | None:intergenic | 30.0% |
| ATGTTGTTCACTCTACTTAA+TGG | + | chr4_4:77397795-77397814 | Msa0704880:intron | 30.0% | |
| TCTTTATATACTCCTTGATG+AGG | + | chr4_4:77397847-77397866 | Msa0704880:intron | 30.0% | |
| CTTTATATACTCCTTGATGA+GGG | + | chr4_4:77397848-77397867 | Msa0704880:intron | 30.0% | |
| !!! | TAAGTTTTATTCCCTCATCA+AGG | - | chr4_4:77397862-77397881 | None:intergenic | 30.0% |
| ATGCCTCAGATTTAATGATA+GGG | + | chr4_4:77397986-77398005 | Msa0704880:CDS | 30.0% | |
| !!! | GAGTTATTTTTATTGCTGCA+AGG | + | chr4_4:77398291-77398310 | Msa0704880:intron | 30.0% |
| !!! | TATTGATTTTTATCCACTGG+AGG | - | chr4_4:77398406-77398425 | None:intergenic | 30.0% |
| CAAGCGATAATTAGAATAAC+TGG | - | chr4_4:77398458-77398477 | None:intergenic | 30.0% | |
| GATATGACATTAAACCTTTC+CGG | + | chr4_4:77398576-77398595 | Msa0704880:intron | 30.0% | |
| ! | TTTATTTGCTAGGTTATGTC+CGG | - | chr4_4:77398598-77398617 | None:intergenic | 30.0% |
| CTTGATCTTTAACATTGATG+TGG | - | chr4_4:77398778-77398797 | None:intergenic | 30.0% | |
| TACAAAATAATGAAGACGCA+TGG | + | chr4_4:77398852-77398871 | Msa0704880:CDS | 30.0% | |
| CAAATGGGACAATTGTAAAA+TGG | - | chr4_4:77398989-77399008 | None:intergenic | 30.0% | |
| TGTAACCTCAAATCTCAAAT+GGG | - | chr4_4:77399004-77399023 | None:intergenic | 30.0% | |
| TTGTAACCTCAAATCTCAAA+TGG | - | chr4_4:77399005-77399024 | None:intergenic | 30.0% | |
| !!! | TTTTTTTGTTTGGAGCTGCT+GGG | - | chr4_4:77392830-77392849 | None:intergenic | 35.0% |
| !!! | TTTTTTTTGTTTGGAGCTGC+TGG | - | chr4_4:77392831-77392850 | None:intergenic | 35.0% |
| !!! | GCGGTTGCATTTTTTTTGTT+TGG | - | chr4_4:77392840-77392859 | None:intergenic | 35.0% |
| GAATCGGGAAAATGAATAAG+TGG | - | chr4_4:77392960-77392979 | None:intergenic | 35.0% | |
| ! | TTAATTAGGTGTCACGCAAT+TGG | - | chr4_4:77393052-77393071 | None:intergenic | 35.0% |
| GTAGTAGTAGTAGTAGTAGT+AGG | - | chr4_4:77393113-77393132 | None:intergenic | 35.0% | |
| !!! | TGTATTGTTTTTACAGCGAG+AGG | + | chr4_4:77393212-77393231 | Msa0704880:intron | 35.0% |
| TAGTTGAGATTCTTTGTGAG+TGG | - | chr4_4:77393345-77393364 | None:intergenic | 35.0% | |
| GCTGATATCGATGTCAATAA+CGG | + | chr4_4:77393392-77393411 | Msa0704880:CDS | 35.0% | |
| ! | TATTTGGTTCCACTTCTAGA+GGG | + | chr4_4:77393578-77393597 | Msa0704880:intron | 35.0% |
| ! | AAGGTGAAGTGATTTGTGTT+TGG | - | chr4_4:77393775-77393794 | None:intergenic | 35.0% |
| ! | TCTGATTAACAGTGAGTTGA+AGG | - | chr4_4:77393794-77393813 | None:intergenic | 35.0% |
| !! | GTATCTACTACTGACTCAAT+AGG | + | chr4_4:77394008-77394027 | Msa0704880:CDS | 35.0% |
| AACAAAGAACTGCCTACAAA+TGG | + | chr4_4:77394035-77394054 | Msa0704880:CDS | 35.0% | |
| ACAAAGAACTGCCTACAAAT+GGG | + | chr4_4:77394036-77394055 | Msa0704880:CDS | 35.0% | |
| TACCATGTATTTCACTGCTT+CGG | + | chr4_4:77394242-77394261 | Msa0704880:intron | 35.0% | |
| ! | GGATGTGTTTAGTCAACTTT+TGG | + | chr4_4:77394263-77394282 | Msa0704880:intron | 35.0% |
| ! | TGTGTTTAGTCAACTTTTGG+TGG | + | chr4_4:77394266-77394285 | Msa0704880:intron | 35.0% |
| ! | AGTTTACCTTTTCACACTTC+AGG | + | chr4_4:77394555-77394574 | Msa0704880:intron | 35.0% |
| !!! | AGAGATTTTCCTTCTAGCTT+TGG | + | chr4_4:77394732-77394751 | Msa0704880:CDS | 35.0% |
| ! | ACTGATTTACCAAAGCTAGA+AGG | - | chr4_4:77394744-77394763 | None:intergenic | 35.0% |
| CATGAGAGTGAGAGAATAAA+TGG | - | chr4_4:77394999-77395018 | None:intergenic | 35.0% | |
| CTCTCACTCTCATGTTTAAT+TGG | + | chr4_4:77395005-77395024 | Msa0704880:intron | 35.0% | |
| ! | GCAAACAATTTTCCAATCAC+TGG | - | chr4_4:77395071-77395090 | None:intergenic | 35.0% |
| GAGCGGTTATTATTTGTTTC+AGG | + | chr4_4:77395270-77395289 | Msa0704880:intron | 35.0% | |
| CATCATAGACATTGTCAATG+GGG | - | chr4_4:77395327-77395346 | None:intergenic | 35.0% | |
| ! | ATCCAACATCTGAAATTCCA+AGG | + | chr4_4:77395374-77395393 | Msa0704880:CDS | 35.0% |
| ! | TTTTATTCGCAAGCTTTCTC+AGG | + | chr4_4:77395556-77395575 | Msa0704880:CDS | 35.0% |
| AATATCTTCTATTGCTGGTG+TGG | + | chr4_4:77395616-77395635 | Msa0704880:CDS | 35.0% | |
| ATAAAGGTGGTAAAACCTCA+AGG | + | chr4_4:77395642-77395661 | Msa0704880:CDS | 35.0% | |
| ! | TTGTTTTCTTGGTTTCCTTG+AGG | - | chr4_4:77395660-77395679 | None:intergenic | 35.0% |
| !! | TTACTAGCTGCTTGTTTTCT+TGG | - | chr4_4:77395671-77395690 | None:intergenic | 35.0% |
| TCATTGAATGAGGCTGTTAA+CGG | + | chr4_4:77395704-77395723 | Msa0704880:CDS | 35.0% | |
| CTCCATCAATAACATAAGGA+GGG | - | chr4_4:77395745-77395764 | None:intergenic | 35.0% | |
| TCTCCATCAATAACATAAGG+AGG | - | chr4_4:77395746-77395765 | None:intergenic | 35.0% | |
| GAAGAAATCAGTGGCTAAAA+AGG | + | chr4_4:77395841-77395860 | Msa0704880:CDS | 35.0% | |
| GGCTAATGATGATTCAGAAA+AGG | + | chr4_4:77395889-77395908 | Msa0704880:CDS | 35.0% | |
| AATGCTAGCAATTGACATTG+TGG | + | chr4_4:77396181-77396200 | Msa0704880:intron | 35.0% | |
| ATGCTAGCAATTGACATTGT+GGG | + | chr4_4:77396182-77396201 | Msa0704880:intron | 35.0% | |
| AGAGAAACAAACGAAACAGT+TGG | - | chr4_4:77396218-77396237 | None:intergenic | 35.0% | |
| AGTGTTAGTGTACCTTTGAT+TGG | - | chr4_4:77396281-77396300 | None:intergenic | 35.0% | |
| TACACAGCTTATGAGTGTAT+CGG | + | chr4_4:77396300-77396319 | Msa0704880:intron | 35.0% | |
| GTTAGTAGCTTGAGAAGTTA+AGG | + | chr4_4:77396338-77396357 | Msa0704880:intron | 35.0% | |
| !!! | CACTCATGCTTTTGAAGTAA+AGG | + | chr4_4:77396534-77396553 | Msa0704880:intron | 35.0% |
| ! | GTTCAAAAAATTGGTTCAGG+TGG | + | chr4_4:77396772-77396791 | Msa0704880:intron | 35.0% |
| CTTCTGTTCAGTCCAAATTT+AGG | + | chr4_4:77396865-77396884 | Msa0704880:intron | 35.0% | |
| GATGTACTAGCTCCTAAATT+TGG | - | chr4_4:77396880-77396899 | None:intergenic | 35.0% | |
| GAGTCAGTGAGTAAAATGTT+AGG | + | chr4_4:77397027-77397046 | Msa0704880:intron | 35.0% | |
| GTCAGTGAGTAAAATGTTAG+GGG | + | chr4_4:77397029-77397048 | Msa0704880:intron | 35.0% | |
| !!! | ATCAAAGGCCCTTCTTTTTT+TGG | + | chr4_4:77397058-77397077 | Msa0704880:intron | 35.0% |
| TGTTCAATACTACTGAGAAG+AGG | - | chr4_4:77397113-77397132 | None:intergenic | 35.0% | |
| TTCAACAGTGACAGTAACAA+TGG | - | chr4_4:77397189-77397208 | None:intergenic | 35.0% | |
| ! | TGATGTGGATTTTCATCATG+AGG | + | chr4_4:77397278-77397297 | Msa0704880:CDS | 35.0% |
| TAGAGATGAATTTAGAGACC+TGG | + | chr4_4:77397347-77397366 | Msa0704880:CDS | 35.0% | |
| GAAAATATTAACGCCTGACA+TGG | - | chr4_4:77397513-77397532 | None:intergenic | 35.0% | |
| !! | ATAATTGTCTTTTTGGGGGA+TGG | + | chr4_4:77397552-77397571 | Msa0704880:intron | 35.0% |
| !! | TAATTGTCTTTTTGGGGGAT+GGG | + | chr4_4:77397553-77397572 | Msa0704880:intron | 35.0% |
| ATATAGGCTATTAGGCAGTT+TGG | + | chr4_4:77397620-77397639 | Msa0704880:intron | 35.0% | |
| ATGGCATCAGTTAACAGTAA+AGG | - | chr4_4:77397734-77397753 | None:intergenic | 35.0% | |
| ! | ACCTTTTCCACGATTATTCA+TGG | - | chr4_4:77397753-77397772 | None:intergenic | 35.0% |
| AATAAGGAAGAAGATACTGC+TGG | + | chr4_4:77397961-77397980 | Msa0704880:CDS | 35.0% | |
| GATGCCTCAGATTTAATGAT+AGG | + | chr4_4:77397985-77398004 | Msa0704880:CDS | 35.0% | |
| TGCCTCAGATTTAATGATAG+GGG | + | chr4_4:77397987-77398006 | Msa0704880:CDS | 35.0% | |
| TTTAATGATAGGGGAGAATG+AGG | + | chr4_4:77397996-77398015 | Msa0704880:CDS | 35.0% | |
| ! | CACAGTTTTGCTTTCTCTTT+TGG | + | chr4_4:77398046-77398065 | Msa0704880:intron | 35.0% |
| !!! | TTTTAGCTTTGAAGTTCAGC+TGG | + | chr4_4:77398266-77398285 | Msa0704880:intron | 35.0% |
| ! | TTTTTATGGAAATCCTCCAG+TGG | + | chr4_4:77398390-77398409 | Msa0704880:intron | 35.0% |
| ! | ATTGTCCCATTTGAGATTTG+AGG | + | chr4_4:77398996-77399015 | Msa0704880:three_prime_UTR | 35.0% |
| TTACAAAGTCAAACTCAGTG+AGG | + | chr4_4:77399019-77399038 | Msa0704880:three_prime_UTR | 35.0% | |
| AAAATGAGATCAAGTGCAAG+AGG | - | chr4_4:77399050-77399069 | None:intergenic | 35.0% | |
| CAAAAAAAATGCAACCGCTG+TGG | + | chr4_4:77392842-77392861 | Msa0704880:five_prime_UTR | 40.0% | |
| TGAATAAGTGGACGAGTTTC+CGG | - | chr4_4:77392948-77392967 | None:intergenic | 40.0% | |
| AAATTACAATCACGCGCTAC+CGG | - | chr4_4:77392995-77393014 | None:intergenic | 40.0% | |
| ACTACTACTACTACTACACG+TGG | + | chr4_4:77393116-77393135 | Msa0704880:CDS | 40.0% | |
| !! | GCAGATACATTCTTTTGAGG+CGG | - | chr4_4:77393272-77393291 | None:intergenic | 40.0% |
| ! | GTATTTGGTTCCACTTCTAG+AGG | + | chr4_4:77393577-77393596 | Msa0704880:intron | 40.0% |
| ! | ATTTGGTTCCACTTCTAGAG+GGG | + | chr4_4:77393579-77393598 | Msa0704880:intron | 40.0% |
| !! | AATTTTAGCCCCTCTAGAAG+TGG | - | chr4_4:77393590-77393609 | None:intergenic | 40.0% |
| ! | GGGGCTAAAATTGATTCTGA+AGG | + | chr4_4:77393598-77393617 | Msa0704880:intron | 40.0% |
| CATTCTCTACAGCATTAGCA+GGG | - | chr4_4:77393968-77393987 | None:intergenic | 40.0% | |
| ACATTCTCTACAGCATTAGC+AGG | - | chr4_4:77393969-77393988 | None:intergenic | 40.0% | |
| CAAAGAACTGCCTACAAATG+GGG | + | chr4_4:77394037-77394056 | Msa0704880:CDS | 40.0% | |
| AATGAACCTTCCCCATTTGT+AGG | - | chr4_4:77394050-77394069 | None:intergenic | 40.0% | |
| TCTTGACAGCAACAAGAGTT+TGG | + | chr4_4:77394070-77394089 | Msa0704880:CDS | 40.0% | |
| !! | ACTAGAGATTAGCCTAAACG+CGG | + | chr4_4:77394109-77394128 | Msa0704880:CDS | 40.0% |
| ATCCGAAGCAGTGAAATACA+TGG | - | chr4_4:77394247-77394266 | None:intergenic | 40.0% | |
| ! | TTATGTTCAGGTCTTGTCTG+CGG | + | chr4_4:77394292-77394311 | Msa0704880:intron | 40.0% |
| CCAATATTCCTAACCCTTTC+CGG | - | chr4_4:77394363-77394382 | None:intergenic | 40.0% | |
| AGAATGCCTGAAGTGTGAAA+AGG | - | chr4_4:77394564-77394583 | None:intergenic | 40.0% | |
| TTCACACTTCAGGCATTCTT+AGG | + | chr4_4:77394565-77394584 | Msa0704880:intron | 40.0% | |
| AGCATTCAGGAAGTCAGAAT+GGG | - | chr4_4:77394679-77394698 | None:intergenic | 40.0% | |
| TAGCATTCAGGAAGTCAGAA+TGG | - | chr4_4:77394680-77394699 | None:intergenic | 40.0% | |
| CTTTGGTAAATCAGTTGCAG+AGG | + | chr4_4:77394749-77394768 | Msa0704880:CDS | 40.0% | |
| ATTCTCAACCATGATGCAAC+TGG | + | chr4_4:77394888-77394907 | Msa0704880:CDS | 40.0% | |
| TTTCAAACTCCCACGAGTTT+CGG | + | chr4_4:77394960-77394979 | Msa0704880:intron | 40.0% | |
| GTAAAACAACCGAAACTCGT+GGG | - | chr4_4:77394972-77394991 | None:intergenic | 40.0% | |
| TGTAAAACAACCGAAACTCG+TGG | - | chr4_4:77394973-77394992 | None:intergenic | 40.0% | |
| CTCAGCCAATTGTAATTACC+TGG | + | chr4_4:77395030-77395049 | Msa0704880:intron | 40.0% | |
| AATTGTAATTACCTGGCCCT+GGG | + | chr4_4:77395037-77395056 | Msa0704880:intron | 40.0% | |
| ATCACTGGTAAAGAATCCCA+GGG | - | chr4_4:77395056-77395075 | None:intergenic | 40.0% | |
| AATCACTGGTAAAGAATCCC+AGG | - | chr4_4:77395057-77395076 | None:intergenic | 40.0% | |
| TGGGATTCTTTACCAGTGAT+TGG | + | chr4_4:77395056-77395075 | Msa0704880:intron | 40.0% | |
| ATCTTTCAATGTGAATGGCG+CGG | + | chr4_4:77395109-77395128 | Msa0704880:CDS | 40.0% | |
| GAGGAAAAATTTGTCCTTCC+AGG | + | chr4_4:77395131-77395150 | Msa0704880:CDS | 40.0% | |
| ATACGATGGCAAAAGTAGGT+CGG | + | chr4_4:77395154-77395173 | Msa0704880:CDS | 40.0% | |
| CAAAAGTAGGTCGGAAATAC+AGG | + | chr4_4:77395163-77395182 | Msa0704880:CDS | 40.0% | |
| TGGATCAATGCCAGATTTCA+TGG | - | chr4_4:77395359-77395378 | None:intergenic | 40.0% | |
| TGCCTTGGAATTTCAGATGT+TGG | - | chr4_4:77395379-77395398 | None:intergenic | 40.0% | |
| ! | TCTGAAATTCCAAGGCATGA+AGG | + | chr4_4:77395382-77395401 | Msa0704880:CDS | 40.0% |
| CAGAATCACAATCAGAGAAG+TGG | - | chr4_4:77395516-77395535 | None:intergenic | 40.0% | |
| GACCCTCCTTATGTTATTGA+TGG | + | chr4_4:77395740-77395759 | Msa0704880:CDS | 40.0% | |
| ! | TTTTCTTCGTCGAGATGCAT+GGG | - | chr4_4:77395942-77395961 | None:intergenic | 40.0% |
| ! | TTTTTCTTCGTCGAGATGCA+TGG | - | chr4_4:77395943-77395962 | None:intergenic | 40.0% |
| TCTCGACGAAGAAAAAGATG+TGG | + | chr4_4:77395947-77395966 | Msa0704880:CDS | 40.0% | |
| TACTTGCAGAACATAAGGAG+CGG | + | chr4_4:77396120-77396139 | Msa0704880:CDS | 40.0% | |
| AAACACCTTCCACCAATCAA+AGG | + | chr4_4:77396266-77396285 | Msa0704880:CDS | 40.0% | |
| GTTAGTGTACCTTTGATTGG+TGG | - | chr4_4:77396278-77396297 | None:intergenic | 40.0% | |
| GTCTAACTGAAAGCAAGCAT+AGG | - | chr4_4:77396404-77396423 | None:intergenic | 40.0% | |
| CATATGATGGTTTCAGTGCA+GGG | - | chr4_4:77396649-77396668 | None:intergenic | 40.0% | |
| TCTAGCAGAATCAGTTATGG+CGG | - | chr4_4:77396911-77396930 | None:intergenic | 40.0% | |
| CATAAACTGCTGCAGAGAAA+AGG | - | chr4_4:77397003-77397022 | None:intergenic | 40.0% | |
| ! | TGGGGATTTTCATCATGATG+TGG | + | chr4_4:77397263-77397282 | Msa0704880:CDS | 40.0% |
| GGCTGATGCTAATTATGAAG+AGG | + | chr4_4:77397299-77397318 | Msa0704880:CDS | 40.0% | |
| TTACCAGTCTTTCATGGACA+AGG | + | chr4_4:77397422-77397441 | Msa0704880:CDS | 40.0% | |
| ACTGATGCCATGAATAATCG+TGG | + | chr4_4:77397743-77397762 | Msa0704880:CDS | 40.0% | |
| GCCATGAATAATCGTGGAAA+AGG | + | chr4_4:77397749-77397768 | Msa0704880:CDS | 40.0% | |
| CTCCCCTATCATTAAATCTG+AGG | - | chr4_4:77397992-77398011 | None:intergenic | 40.0% | |
| AAACCTTAGTTCCAGGTGTT+GGG | - | chr4_4:77398023-77398042 | None:intergenic | 40.0% | |
| CACTATTCTCTTGATGCACA+TGG | + | chr4_4:77398072-77398091 | Msa0704880:intron | 40.0% | |
| CTCTTGATGCACATGGTTTA+TGG | + | chr4_4:77398079-77398098 | Msa0704880:intron | 40.0% | |
| ! | TATTGCATGATGTTTTCCCG+TGG | + | chr4_4:77398147-77398166 | Msa0704880:intron | 40.0% |
| AGTTAAGTTCCACACTTCCA+CGG | - | chr4_4:77398167-77398186 | None:intergenic | 40.0% | |
| TCTATGTAGCAGAGGGATAA+AGG | + | chr4_4:77398523-77398542 | Msa0704880:intron | 40.0% | |
| CTATGTAGCAGAGGGATAAA+GGG | + | chr4_4:77398524-77398543 | Msa0704880:intron | 40.0% | |
| TATGTAGCAGAGGGATAAAG+GGG | + | chr4_4:77398525-77398544 | Msa0704880:intron | 40.0% | |
| AATCTGACGATAGTGACGAT+GGG | + | chr4_4:77398828-77398847 | Msa0704880:CDS | 40.0% | |
| CGGAAATGAGAAGAGGAATC+GGG | - | chr4_4:77392975-77392994 | None:intergenic | 45.0% | |
| CCGGAAATGAGAAGAGGAAT+CGG | - | chr4_4:77392976-77392995 | None:intergenic | 45.0% | |
| CCGATTCCTCTTCTCATTTC+CGG | + | chr4_4:77392973-77392992 | Msa0704880:five_prime_UTR | 45.0% | |
| CTACACGTGGTAACTGCTAA+TGG | + | chr4_4:77393129-77393148 | Msa0704880:intron | 45.0% | |
| !!! | TTGTTTTTACAGCGAGAGGC+AGG | + | chr4_4:77393216-77393235 | Msa0704880:intron | 45.0% |
| !!! | GATACATTCTTTTGAGGCGG+TGG | - | chr4_4:77393269-77393288 | None:intergenic | 45.0% |
| !! | CTAGAGATTAGCCTAAACGC+GGG | + | chr4_4:77394110-77394129 | Msa0704880:CDS | 45.0% |
| GCTTCAGGCGACATTTACAA+TGG | + | chr4_4:77394143-77394162 | Msa0704880:CDS | 45.0% | |
| CCGGAAAGGGTTAGGAATAT+TGG | + | chr4_4:77394360-77394379 | Msa0704880:intron | 45.0% | |
| CTAGGTCGTGGCTTAATCTT+GGG | - | chr4_4:77394464-77394483 | None:intergenic | 45.0% | |
| TCTAGGTCGTGGCTTAATCT+TGG | - | chr4_4:77394465-77394484 | None:intergenic | 45.0% | |
| TTCAGGAAGTCAGAATGGGA+AGG | - | chr4_4:77394675-77394694 | None:intergenic | 45.0% | |
| ! | ACTCTGAAGGCATAGCATTC+AGG | - | chr4_4:77394692-77394711 | None:intergenic | 45.0% |
| AACCATGATGCAACTGGTAC+AGG | + | chr4_4:77394894-77394913 | Msa0704880:CDS | 45.0% | |
| CAGGGCCAGGTAATTACAAT+TGG | - | chr4_4:77395038-77395057 | None:intergenic | 45.0% | |
| CAATTGTAATTACCTGGCCC+TGG | + | chr4_4:77395036-77395055 | Msa0704880:intron | 45.0% | |
| TTTGTCCTTCCAGGATACGA+TGG | + | chr4_4:77395140-77395159 | Msa0704880:CDS | 45.0% | |
| ! | TTTTGCCATCGTATCCTGGA+AGG | - | chr4_4:77395148-77395167 | None:intergenic | 45.0% |
| !! | CTACTTTTGCCATCGTATCC+TGG | - | chr4_4:77395152-77395171 | None:intergenic | 45.0% |
| CAGGATACGATGGCAAAAGT+AGG | + | chr4_4:77395150-77395169 | Msa0704880:CDS | 45.0% | |
| TTTGTCAAGCCTTCATGCCT+TGG | - | chr4_4:77395394-77395413 | None:intergenic | 45.0% | |
| TTCTCCAGATAGTCCCACAT+TGG | + | chr4_4:77395414-77395433 | Msa0704880:CDS | 45.0% | |
| TGCAAAAGGTCAGCCAATGT+GGG | - | chr4_4:77395430-77395449 | None:intergenic | 45.0% | |
| CAGTATCGTCTTGCTGCAAA+AGG | - | chr4_4:77395444-77395463 | None:intergenic | 45.0% | |
| ! | CTTTTGCAGCAAGACGATAC+TGG | + | chr4_4:77395442-77395461 | Msa0704880:CDS | 45.0% |
| ATCTTCTATTGCTGGTGTGG+AGG | + | chr4_4:77395619-77395638 | Msa0704880:CDS | 45.0% | |
| ATTGCTGGTGTGGAGGATAA+AGG | + | chr4_4:77395626-77395645 | Msa0704880:CDS | 45.0% | |
| CAATAACATAAGGAGGGTCG+AGG | - | chr4_4:77395739-77395758 | None:intergenic | 45.0% | |
| AAATGACGATGAGAACGACG+TGG | + | chr4_4:77395778-77395797 | Msa0704880:CDS | 45.0% | |
| TGTTGATGCGCTTGTCTTCT+TGG | - | chr4_4:77395813-77395832 | None:intergenic | 45.0% | |
| ! | GATGCATGGGGGAACTTTTT+AGG | - | chr4_4:77395929-77395948 | None:intergenic | 45.0% |
| TTTCTTCGTCGAGATGCATG+GGG | - | chr4_4:77395941-77395960 | None:intergenic | 45.0% | |
| GTGTACCTTTGATTGGTGGA+AGG | - | chr4_4:77396274-77396293 | None:intergenic | 45.0% | |
| CCATATGATGGTTTCAGTGC+AGG | - | chr4_4:77396650-77396669 | None:intergenic | 45.0% | |
| CCTGCACTGAAACCATCATA+TGG | + | chr4_4:77396647-77396666 | Msa0704880:intron | 45.0% | |
| ACGCAGTGTATGCCATATGA+TGG | - | chr4_4:77396662-77396681 | None:intergenic | 45.0% | |
| CTGCTGCAGAGAAAAGGAAT+TGG | - | chr4_4:77396997-77397016 | None:intergenic | 45.0% | |
| CTACTGAGAAGAGGATGTTG+TGG | - | chr4_4:77397104-77397123 | None:intergenic | 45.0% | |
| GTGACAGTAACAATGGCAAG+TGG | - | chr4_4:77397182-77397201 | None:intergenic | 45.0% | |
| ! | TTTCATGGACAAGGCACCTA+GGG | + | chr4_4:77397431-77397450 | Msa0704880:CDS | 45.0% |
| CAAACCTTAGTTCCAGGTGT+TGG | - | chr4_4:77398024-77398043 | None:intergenic | 45.0% | |
| GTTAAGTTCCACACTTCCAC+GGG | - | chr4_4:77398166-77398185 | None:intergenic | 45.0% | |
| ! | GTGGAAGTGTGGAACTTAAC+TGG | + | chr4_4:77398166-77398185 | Msa0704880:intron | 45.0% |
| TACATAGAGTACGAGAGAGG+GGG | - | chr4_4:77398511-77398530 | None:intergenic | 45.0% | |
| CTACATAGAGTACGAGAGAG+GGG | - | chr4_4:77398512-77398531 | None:intergenic | 45.0% | |
| GCTACATAGAGTACGAGAGA+GGG | - | chr4_4:77398513-77398532 | None:intergenic | 45.0% | |
| TGCTACATAGAGTACGAGAG+AGG | - | chr4_4:77398514-77398533 | None:intergenic | 45.0% | |
| TCTCGTACTCTATGTAGCAG+AGG | + | chr4_4:77398515-77398534 | Msa0704880:intron | 45.0% | |
| CTCGTACTCTATGTAGCAGA+GGG | + | chr4_4:77398516-77398535 | Msa0704880:intron | 45.0% | |
| TTGCTAGGTTATGTCCGGAA+AGG | - | chr4_4:77398593-77398612 | None:intergenic | 45.0% | |
| ! | GACTCTTGTTATCTGAGTGC+AGG | + | chr4_4:77398721-77398740 | Msa0704880:intron | 45.0% |
| TGTTATCTGAGTGCAGGAAG+AGG | + | chr4_4:77398727-77398746 | Msa0704880:intron | 45.0% | |
| TCACTATCGTCAGATTGCTC+TGG | - | chr4_4:77398824-77398843 | None:intergenic | 45.0% | |
| CAATCTGACGATAGTGACGA+TGG | + | chr4_4:77398827-77398846 | Msa0704880:CDS | 45.0% | |
| !!! | AAAAATTATCATTATTTTTT+TGG | - | chr4_4:77395236-77395255 | None:intergenic | 5.0% |
| !!! | AAAAAATAATGATAATTTTT+TGG | + | chr4_4:77395236-77395255 | Msa0704880:intron | 5.0% |
| !! | ATTTATTTATTTGATAAATA+TGG | - | chr4_4:77398122-77398141 | None:intergenic | 5.0% |
| CAAGAAGAGCAAAGCCACAG+CGG | - | chr4_4:77392859-77392878 | None:intergenic | 50.0% | |
| !!! | TTTTGAGGCGGTGGTGGTTT+GGG | - | chr4_4:77393260-77393279 | None:intergenic | 50.0% |
| !!! | ACATTCTTTTGAGGCGGTGG+TGG | - | chr4_4:77393266-77393285 | None:intergenic | 50.0% |
| GAACTGCCTACAAATGGGGA+AGG | + | chr4_4:77394041-77394060 | Msa0704880:CDS | 50.0% | |
| ! | TGAGTTTGGAGAAGTGCGAG+AGG | + | chr4_4:77394196-77394215 | Msa0704880:CDS | 50.0% |
| TCAGGGAGGACATCACTGAA+AGG | - | chr4_4:77394332-77394351 | None:intergenic | 50.0% | |
| !! | GTATTGCTGACTCTAGGTCG+TGG | - | chr4_4:77394476-77394495 | None:intergenic | 50.0% |
| !! | GCTGGTGTATTGCTGACTCT+AGG | - | chr4_4:77394482-77394501 | None:intergenic | 50.0% |
| GCTTCTGCTTCTGCTTCATC+TGG | + | chr4_4:77394506-77394525 | Msa0704880:CDS | 50.0% | |
| TCGTGAACTGCAGACTCTGA+AGG | - | chr4_4:77394705-77394724 | None:intergenic | 50.0% | |
| TCAGAGTCTGCAGTTCACGA+TGG | + | chr4_4:77394705-77394724 | Msa0704880:CDS | 50.0% | |
| GTCATCGAGTGATTCTAGCC+CGG | - | chr4_4:77394868-77394887 | None:intergenic | 50.0% | |
| CACCTGTACCAGTTGCATCA+TGG | - | chr4_4:77394899-77394918 | None:intergenic | 50.0% | |
| TTTCAATGTGAATGGCGCGG+AGG | + | chr4_4:77395112-77395131 | Msa0704880:CDS | 50.0% | |
| ACATTGTCAATGGGGCAGTC+AGG | - | chr4_4:77395319-77395338 | None:intergenic | 50.0% | |
| TCAGCCAATGTGGGACTATC+TGG | - | chr4_4:77395421-77395440 | None:intergenic | 50.0% | |
| CTGCAAAAGGTCAGCCAATG+TGG | - | chr4_4:77395431-77395450 | None:intergenic | 50.0% | |
| !! | GCATGGGGGAACTTTTTAGG+AGG | - | chr4_4:77395926-77395945 | None:intergenic | 50.0% |
| TTCTTCGTCGAGATGCATGG+GGG | - | chr4_4:77395940-77395959 | None:intergenic | 50.0% | |
| TGCAGAACATAAGGAGCGGT+TGG | + | chr4_4:77396124-77396143 | Msa0704880:CDS | 50.0% | |
| AGAACATAAGGAGCGGTTGG+CGG | + | chr4_4:77396127-77396146 | Msa0704880:CDS | 50.0% | |
| !! | TTGGTGGAAGGTGTTTGCGA+AGG | - | chr4_4:77396262-77396281 | None:intergenic | 50.0% |
| !! | AAATTGGTTCAGGTGGGCTG+AGG | + | chr4_4:77396779-77396798 | Msa0704880:intron | 50.0% |
| TGGCTCGATCATCATCATCC+AGG | - | chr4_4:77397368-77397387 | None:intergenic | 50.0% | |
| GTGCCTTGTCCATGAAAGAC+TGG | - | chr4_4:77397428-77397447 | None:intergenic | 50.0% | |
| ! | CTTTCATGGACAAGGCACCT+AGG | + | chr4_4:77397430-77397449 | Msa0704880:CDS | 50.0% |
| ! | TTCATGGACAAGGCACCTAG+GGG | + | chr4_4:77397432-77397451 | Msa0704880:CDS | 50.0% |
| ! | ACAAGGCACCTAGGGGAAAA+TGG | + | chr4_4:77397439-77397458 | Msa0704880:CDS | 50.0% |
| !! | TTGTCTTTTTGGGGGATGGG+AGG | + | chr4_4:77397556-77397575 | Msa0704880:intron | 50.0% |
| TGTGCGCAAACCTTAGTTCC+AGG | - | chr4_4:77398030-77398049 | None:intergenic | 50.0% | |
| ! | GATGTTTTCCCGTGGAAGTG+TGG | + | chr4_4:77398155-77398174 | Msa0704880:intron | 50.0% |
| !! | TCGTCAGATTGCTCTGGAAC+TGG | - | chr4_4:77398818-77398837 | None:intergenic | 50.0% |
| TTGCACTGTTCTCGACCTGC+CGG | + | chr4_4:77392898-77392917 | Msa0704880:five_prime_UTR | 55.0% | |
| ! | GAAACTCCGGCCTCGTTTTC+CGG | - | chr4_4:77392920-77392939 | None:intergenic | 55.0% |
| GCGCTACCGGAAATGAGAAG+AGG | - | chr4_4:77392982-77393001 | None:intergenic | 55.0% | |
| ! | GGTGGTTTGGGCTTAGCCTT+AGG | - | chr4_4:77393248-77393267 | None:intergenic | 55.0% |
| !!! | CTTTTGAGGCGGTGGTGGTT+TGG | - | chr4_4:77393261-77393280 | None:intergenic | 55.0% |
| !!! | CGCTTTTGAAGCCCGCGTTT+AGG | - | chr4_4:77394124-77394143 | None:intergenic | 55.0% |
| CTTGTCTGCGGAAATCGAGC+TGG | + | chr4_4:77394304-77394323 | Msa0704880:CDS | 55.0% | |
| AGTGATGTCCTCCCTGATCC+TGG | + | chr4_4:77394335-77394354 | Msa0704880:CDS | 55.0% | |
| CCTTTCCGGTTCCAGGATCA+GGG | - | chr4_4:77394349-77394368 | None:intergenic | 55.0% | |
| CCTGATCCTGGAACCGGAAA+GGG | + | chr4_4:77394347-77394366 | Msa0704880:CDS | 55.0% | |
| TCCTGGAACCGGAAAGGGTT+AGG | + | chr4_4:77394352-77394371 | Msa0704880:intron | 55.0% | |
| TCCTAACCCTTTCCGGTTCC+AGG | - | chr4_4:77394356-77394375 | None:intergenic | 55.0% | |
| GCAGAAGCAGAAGCAGTAGC+TGG | - | chr4_4:77394500-77394519 | None:intergenic | 55.0% | |
| TGGTAAAGAATCCCAGGGCC+AGG | - | chr4_4:77395051-77395070 | None:intergenic | 55.0% | |
| CAATGGGGCAGTCAGGATCA+GGG | - | chr4_4:77395312-77395331 | None:intergenic | 55.0% | |
| TCAATGGGGCAGTCAGGATC+AGG | - | chr4_4:77395313-77395332 | None:intergenic | 55.0% | |
| GCTGGTGTGGAGGATAAAGG+TGG | + | chr4_4:77395629-77395648 | Msa0704880:CDS | 55.0% | |
| !! | CATAGTGGACAAGGCTCTGC+TGG | + | chr4_4:77396049-77396068 | Msa0704880:intron | 55.0% |
| !! | CGTGCTGACCATTTTCCCCT+AGG | - | chr4_4:77397450-77397469 | None:intergenic | 55.0% |
| !! | CTTTTTGGGGGATGGGAGGA+AGG | + | chr4_4:77397560-77397579 | Msa0704880:intron | 55.0% |
| GAGAATGAGGACCCAACACC+TGG | + | chr4_4:77398009-77398028 | Msa0704880:CDS | 55.0% | |
| GGACCCAACACCTGGAACTA+AGG | + | chr4_4:77398017-77398036 | Msa0704880:CDS | 55.0% | |
| AGAGGTTGCAACAGCTGAGC+AGG | + | chr4_4:77398745-77398764 | Msa0704880:CDS | 55.0% | |
| TCTCGACCTGCCGGAAAACG+AGG | + | chr4_4:77392907-77392926 | Msa0704880:five_prime_UTR | 60.0% | |
| GTTTCCGGCGAGCGAAACTC+CGG | - | chr4_4:77392933-77392952 | None:intergenic | 60.0% | |
| GAGAGGCAGGTTTGCGCCTA+AGG | + | chr4_4:77393229-77393248 | Msa0704880:CDS | 60.0% | |
| !! | GCGGGCTTCAAAAGCGCTTC+AGG | + | chr4_4:77394128-77394147 | Msa0704880:CDS | 60.0% |
| GTCCTCCCTGATCCTGGAAC+CGG | + | chr4_4:77394341-77394360 | Msa0704880:CDS | 60.0% | |
| TTCCGGTTCCAGGATCAGGG+AGG | - | chr4_4:77394346-77394365 | None:intergenic | 60.0% | |
| CCCTGATCCTGGAACCGGAA+AGG | + | chr4_4:77394346-77394365 | Msa0704880:CDS | 60.0% | |
| CCCTTTCCGGTTCCAGGATC+AGG | - | chr4_4:77394350-77394369 | None:intergenic | 60.0% | |
| !! | GGGTACTGGAGGGAGTGGAA+GGG | - | chr4_4:77398491-77398510 | None:intergenic | 60.0% |
| !! | ACGAGAGAGGGGGTACTGGA+GGG | - | chr4_4:77398501-77398520 | None:intergenic | 60.0% |
| !! | TACGAGAGAGGGGGTACTGG+AGG | - | chr4_4:77398502-77398521 | None:intergenic | 60.0% |
| ! | GAGTACGAGAGAGGGGGTAC+TGG | - | chr4_4:77398505-77398524 | None:intergenic | 60.0% |
| TGCAACAGCTGAGCAGGAGC+AGG | + | chr4_4:77398751-77398770 | Msa0704880:CDS | 60.0% | |
| GACCTGCCGGAAAACGAGGC+CGG | + | chr4_4:77392911-77392930 | Msa0704880:five_prime_UTR | 65.0% | |
| !! | GGTTCAGGTGGGCTGAGGCA+TGG | + | chr4_4:77396784-77396803 | Msa0704880:intron | 65.0% |
| !! | TCAGGTGGGCTGAGGCATGG+AGG | + | chr4_4:77396787-77396806 | Msa0704880:intron | 65.0% |
| !! | GGGGTACTGGAGGGAGTGGA+AGG | - | chr4_4:77398492-77398511 | None:intergenic | 65.0% |
| !! | AGAGGGGGTACTGGAGGGAG+TGG | - | chr4_4:77398496-77398515 | None:intergenic | 65.0% |
| ! | CTCCGGCCTCGTTTTCCGGC+AGG | - | chr4_4:77392916-77392935 | None:intergenic | 70.0% |
| GAGGCCGGAGTTTCGCTCGC+CGG | + | chr4_4:77392926-77392945 | Msa0704880:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 77392812 | 77399209 | 77392812 | ID=Msa0704880;Name=Msa0704880 |
| chr4_4 | mRNA | 77392812 | 77399209 | 77392812 | ID=Msa0704880-mRNA-1;Parent=Msa0704880;Name=Msa0704880-mRNA-1;_AED=0.22;_eAED=0.23;_QI=271|0.93|0.93|1|1|1|16|311|788 |
| chr4_4 | exon | 77392812 | 77393137 | 77392812 | ID=Msa0704880-mRNA-1:exon:24520;Parent=Msa0704880-mRNA-1 |
| chr4_4 | exon | 77393228 | 77393413 | 77393228 | ID=Msa0704880-mRNA-1:exon:24521;Parent=Msa0704880-mRNA-1 |
| chr4_4 | exon | 77393946 | 77394217 | 77393946 | ID=Msa0704880-mRNA-1:exon:24522;Parent=Msa0704880-mRNA-1 |
| chr4_4 | exon | 77394302 | 77394368 | 77394302 | ID=Msa0704880-mRNA-1:exon:24523;Parent=Msa0704880-mRNA-1 |
| chr4_4 | exon | 77394447 | 77394527 | 77394447 | ID=Msa0704880-mRNA-1:exon:24524;Parent=Msa0704880-mRNA-1 |
| chr4_4 | exon | 77394628 | 77394770 | 77394628 | ID=Msa0704880-mRNA-1:exon:24525;Parent=Msa0704880-mRNA-1 |
| chr4_4 | exon | 77394849 | 77394915 | 77394849 | ID=Msa0704880-mRNA-1:exon:24526;Parent=Msa0704880-mRNA-1 |
| chr4_4 | exon | 77395093 | 77395184 | 77395093 | ID=Msa0704880-mRNA-1:exon:24527;Parent=Msa0704880-mRNA-1 |
| chr4_4 | exon | 77395292 | 77395474 | 77395292 | ID=Msa0704880-mRNA-1:exon:24528;Parent=Msa0704880-mRNA-1 |
| chr4_4 | exon | 77395545 | 77395968 | 77395545 | ID=Msa0704880-mRNA-1:exon:24529;Parent=Msa0704880-mRNA-1 |
| chr4_4 | exon | 77396054 | 77396148 | 77396054 | ID=Msa0704880-mRNA-1:exon:24530;Parent=Msa0704880-mRNA-1 |
| chr4_4 | exon | 77396244 | 77396287 | 77396244 | ID=Msa0704880-mRNA-1:exon:24531;Parent=Msa0704880-mRNA-1 |
| chr4_4 | exon | 77397260 | 77397491 | 77397260 | ID=Msa0704880-mRNA-1:exon:24532;Parent=Msa0704880-mRNA-1 |
| chr4_4 | exon | 77397626 | 77397770 | 77397626 | ID=Msa0704880-mRNA-1:exon:24533;Parent=Msa0704880-mRNA-1 |
| chr4_4 | exon | 77397914 | 77398038 | 77397914 | ID=Msa0704880-mRNA-1:exon:24534;Parent=Msa0704880-mRNA-1 |
| chr4_4 | exon | 77398743 | 77399209 | 77398743 | ID=Msa0704880-mRNA-1:exon:24535;Parent=Msa0704880-mRNA-1 |
| chr4_4 | five_prime_UTR | 77392812 | 77393082 | 77392812 | ID=Msa0704880-mRNA-1:five_prime_utr;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77393083 | 77393137 | 77393083 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77393228 | 77393413 | 77393228 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77393946 | 77394217 | 77393946 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77394302 | 77394368 | 77394302 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77394447 | 77394527 | 77394447 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77394628 | 77394770 | 77394628 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77394849 | 77394915 | 77394849 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77395093 | 77395184 | 77395093 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77395292 | 77395474 | 77395292 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77395545 | 77395968 | 77395545 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77396054 | 77396148 | 77396054 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77396244 | 77396287 | 77396244 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77397260 | 77397491 | 77397260 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77397626 | 77397770 | 77397626 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77397914 | 77398038 | 77397914 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | CDS | 77398743 | 77398898 | 77398743 | ID=Msa0704880-mRNA-1:cds;Parent=Msa0704880-mRNA-1 |
| chr4_4 | three_prime_UTR | 77398899 | 77399209 | 77398899 | ID=Msa0704880-mRNA-1:three_prime_utr;Parent=Msa0704880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
