AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0830540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0830540 MtrunA17_Chr5g0396231 94.831 503 23 2 1 501 1 502 0.0 895
Msa0830540 MtrunA17_Chr4g0014351 57.143 119 50 1 381 498 750 868 1.02e-38 150
Msa0830540 MtrunA17_Chr4g0014351 37.220 223 121 5 1 217 1 210 1.79e-32 132
Msa0830540 MtrunA17_Chr4g0052911 35.593 177 88 7 333 496 74 237 1.07e-21 94.0
Msa0830540 MtrunA17_Chr8g0339171 53.684 95 37 4 408 498 46 137 1.55e-19 85.5
Msa0830540 MtrunA17_Chr8g0382711 33.333 183 101 7 330 498 31 206 6.56e-18 82.4
Msa0830540 MtrunA17_Chr1g0179681 34.286 140 79 4 369 499 109 244 5.82e-16 77.8
Msa0830540 MtrunA17_Chr8g0352971 46.316 95 48 2 405 496 10 104 8.22e-15 76.6
Msa0830540 MtrunA17_Chr8g0377771 49.438 89 42 3 410 496 54 141 9.32e-15 77.0
Msa0830540 MtrunA17_Chr8g0339141 48.315 89 43 3 410 496 56 143 1.05e-14 76.6
Msa0830540 MtrunA17_Chr7g0234801 47.126 87 43 3 412 496 52 137 1.31e-14 76.3
Msa0830540 MtrunA17_Chr4g0033841 37.857 140 65 6 370 500 97 223 1.65e-12 67.0
Msa0830540 MtrunA17_Chr5g0435521 40.659 91 48 3 415 501 35 123 3.33e-12 65.5
Msa0830540 MtrunA17_Chr1g0179231 36.364 121 44 3 412 499 96 216 1.58e-11 63.9
Msa0830540 MtrunA17_Chr7g0255551 39.773 88 48 2 412 496 39 124 3.67e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0830540 AT4G25340.1 47.776 517 212 16 1 499 1 477 4.08e-117 353
Msa0830540 AT4G25340.2 45.455 473 203 15 1 457 1 434 1.60e-91 286
Msa0830540 AT5G05420.1 64.486 107 38 0 392 498 36 142 5.89e-44 152
Msa0830540 AT3G12340.3 51.562 128 61 1 372 498 250 377 8.50e-36 137
Msa0830540 AT3G12340.2 51.562 128 61 1 372 498 250 377 8.50e-36 137
Msa0830540 AT3G12340.1 51.562 128 61 1 372 498 371 498 1.31e-34 136
Msa0830540 AT3G25220.1 51.546 97 40 4 408 500 48 141 2.21e-19 85.5
Msa0830540 AT5G48580.1 50.526 95 40 4 408 498 48 139 7.52e-19 84.3
Msa0830540 AT5G45680.1 42.500 120 53 5 391 497 90 206 1.14e-18 85.1
Msa0830540 AT3G25230.1 51.685 89 36 4 412 496 57 142 5.57e-16 81.3
Msa0830540 AT3G25230.2 51.685 89 36 4 412 496 57 142 7.24e-16 80.9
Msa0830540 AT5G48570.1 50.000 90 38 4 412 497 65 151 1.03e-15 80.5
Msa0830540 AT3G10060.1 34.194 155 87 5 354 499 69 217 3.54e-15 75.5
Msa0830540 AT3G55520.2 41.758 91 47 3 415 501 35 123 3.24e-13 68.9
Msa0830540 AT3G55520.3 41.758 91 47 3 415 501 35 123 3.24e-13 68.9
Msa0830540 AT3G55520.1 41.758 91 47 3 415 501 35 123 3.24e-13 68.9
Msa0830540 AT2G43560.1 38.261 115 62 4 392 500 106 217 3.79e-13 69.3
Msa0830540 AT2G43560.2 38.136 118 64 4 389 500 47 161 3.93e-12 65.1

Find 139 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCGAAGCATCCATCTTTC+TGG 0.194721 5_4:-3593553 Msa0830540:CDS
CACTGACGACAATGGGATTC+TGG 0.208619 5_4:-3594985 Msa0830540:exon
TTAAGGAATCATTAAATTAA+AGG 0.223146 5_4:-3589874 Msa0830540:three_prime_UTR
AGCTTCTCCTTCAGCCTCTT+TGG 0.225392 5_4:+3591056 None:intergenic
TTTCTTCAGGGATGAGGGTT+GGG 0.234866 5_4:-3590429 Msa0830540:intron
AGGTGATTGCAGAAATATTA+AGG 0.242186 5_4:-3589891 Msa0830540:three_prime_UTR
AGCATTCTTCAGTGCGCTTC+TGG 0.249781 5_4:-3593685 Msa0830540:CDS
ACTTACAATTCCACCATCTA+TGG 0.251042 5_4:-3590395 Msa0830540:CDS
CAGCTTCCAGTTGTCATTAG+AGG 0.251117 5_4:-3592303 Msa0830540:CDS
TCTGAATTTGATAGTGAAAA+TGG 0.258524 5_4:-3593298 Msa0830540:CDS
CATACCAAGTCGAAACTTAA+AGG 0.287309 5_4:+3590661 None:intergenic
TTGCCGCTTCGGCTTCGTTT+TGG 0.304667 5_4:-3590134 Msa0830540:three_prime_UTR
CCTTTGTCGCTAGACTTTAC+AGG 0.307524 5_4:-3590069 Msa0830540:three_prime_UTR
GACGACAATCAGCCTGAAAA+TGG 0.313986 5_4:-3592399 Msa0830540:CDS
TCCAGACAACCAACATTATA+CGG 0.330975 5_4:+3589964 None:intergenic
TTGGGAGAGGACGTGGGAAC+TGG 0.337787 5_4:-3593334 Msa0830540:CDS
AAAATATTTGACTCGTGTAT+TGG 0.338581 5_4:-3590692 Msa0830540:CDS
TGGGATTACAATTAGCGTTT+TGG 0.341341 5_4:+3595082 None:intergenic
GGATAGGTTCTCACGTTAGA+TGG 0.341955 5_4:+3590946 None:intergenic
GGTTATAGAGGACATATCTA+TGG 0.345544 5_4:-3590914 Msa0830540:CDS
AAATGAAATTCAACTTCGTC+AGG 0.350910 5_4:+3595013 None:intergenic
AGCAAAGCAATCGAAGAAAA+AGG 0.355166 5_4:-3592367 Msa0830540:CDS
AACCAGAAAGATGGATGCTT+CGG 0.367662 5_4:+3593551 None:intergenic
TCTCTCGTGTCGTCGTCATC+TGG 0.377480 5_4:+3593520 None:intergenic
ACAATGCAAAAGTGATTCAT+TGG 0.381195 5_4:-3593353 Msa0830540:intron
TGCAAACCTCGCATATTCAT+TGG 0.384699 5_4:-3590092 Msa0830540:three_prime_UTR
GGATGACTTGGTGGCATTCT+CGG 0.384813 5_4:-3593584 Msa0830540:CDS
GGAGTATACCACAAAATTCA+TGG 0.385779 5_4:-3590209 Msa0830540:CDS
TGCCCTTTGAATCTTAAGTT+TGG 0.390870 5_4:-3593610 Msa0830540:CDS
GCTTTGTCTGAAGTGGAAAT+CGG 0.394739 5_4:+3592237 None:intergenic
ACAATTTCATACCCCATAGA+TGG 0.396140 5_4:+3590382 None:intergenic
TCCGTATAATGTTGGTTGTC+TGG 0.398823 5_4:-3589965 Msa0830540:three_prime_UTR
TGCAATCACCTAAAACATAA+AGG 0.401860 5_4:+3589903 None:intergenic
ACTGACGACAATGGGATTCT+GGG 0.403272 5_4:-3594984 Msa0830540:exon
GTTGAGTTGGTTGGCGTTGA+AGG 0.403304 5_4:-3590174 Msa0830540:CDS
GGGTGGGATGTTGGCGTCAA+TGG 0.405209 5_4:-3590537 Msa0830540:intron
AAATTAAAGGAATAATTGTA+TGG 0.411566 5_4:-3589861 Msa0830540:three_prime_UTR
GGGCACGTCTCAACCTTGTT+TGG 0.412493 5_4:+3593628 None:intergenic
TCCTCTATAACCAATCCATT+TGG 0.417967 5_4:+3590925 None:intergenic
TTGCATGAGAGACATTGTTC+TGG 0.419904 5_4:+3591263 None:intergenic
TGAAAACCCTTACTCATCAT+TGG 0.420043 5_4:+3591216 None:intergenic
ACTTTACAGGAGCCGAAGTT+TGG 0.422203 5_4:-3590056 Msa0830540:three_prime_UTR
TTGGTTATTTGAAGGTGCTT+CGG 0.423162 5_4:+3595101 None:intergenic
TCCACATCGTCAGTACTATA+CGG 0.427484 5_4:+3594821 None:intergenic
GGTTGTCTGGAGTAATTTGA+TGG 0.431019 5_4:-3589952 Msa0830540:three_prime_UTR
TTGTCACCTCTAATGACAAC+TGG 0.439166 5_4:+3592297 None:intergenic
AGATTTAGCTTTGTCTGAAG+TGG 0.441957 5_4:+3592230 None:intergenic
TTCTTCAGGGATGAGGGTTG+GGG 0.443024 5_4:-3590428 Msa0830540:intron
GGTTCTCACGTTAGATGGCT+TGG 0.444994 5_4:+3590951 None:intergenic
CATGCAAAGGATGGAGATGA+TGG 0.445035 5_4:-3591247 Msa0830540:CDS
TGATTCATTGGGAGAGGACG+TGG 0.450717 5_4:-3593341 Msa0830540:CDS
GCAAATAGTAACTCTAAATT+GGG 0.452028 5_4:-3595124 None:intergenic
GATGGCAAAAGAGCTGATCT+TGG 0.455967 5_4:-3590883 Msa0830540:CDS
CAGGTCAGTGTTAGATATAC+CGG 0.457744 5_4:-3590734 Msa0830540:CDS
ATACCAAGTCGAAACTTAAA+GGG 0.462033 5_4:+3590662 None:intergenic
TCCAAATGGATTGGTTATAG+AGG 0.465197 5_4:-3590926 Msa0830540:CDS
ACCAGAAAGATGGATGCTTC+GGG 0.470599 5_4:+3593552 None:intergenic
CTAAAATTTCAGGCTACTCT+AGG 0.474162 5_4:-3593730 Msa0830540:intron
AGGTGACAATAAGTTTGTCT+TGG 0.479792 5_4:-3592283 Msa0830540:CDS
ATATTTGATGTTGAGTTGGT+TGG 0.480042 5_4:-3590183 Msa0830540:CDS
CTATACGGAACCGGATTGCC+AGG 0.485280 5_4:+3594836 None:intergenic
GCACAAAATAACCAGAAAGA+TGG 0.487484 5_4:+3593542 None:intergenic
CTTACAATTCCACCATCTAT+GGG 0.490011 5_4:-3590394 Msa0830540:CDS
GTCATCAAGGGGTGGGATGT+TGG 0.490964 5_4:-3590546 Msa0830540:CDS
GCTTATATTTGATGTTGAGT+TGG 0.494265 5_4:-3590187 Msa0830540:CDS
AACGTGAGAACCTATCCAAA+TGG 0.495137 5_4:-3590940 Msa0830540:CDS
AAGAGCTGATCTTGGAAAGA+AGG 0.496054 5_4:-3590875 Msa0830540:intron
CTTTGTCTGAAGTGGAAATC+GGG 0.496076 5_4:+3592238 None:intergenic
TTTCTTTGTCCGTATAATGT+TGG 0.498430 5_4:-3589973 Msa0830540:three_prime_UTR
TGAAGTGAAACCTGGCAATC+CGG 0.499808 5_4:-3594846 Msa0830540:CDS
TTAGATGGCTTGGCTTCAGT+TGG 0.504936 5_4:+3590961 None:intergenic
TCACCAAACTTAAGATTCAA+AGG 0.507727 5_4:+3593607 None:intergenic
CTCAACCTTGTTTGGCAGCA+AGG 0.509715 5_4:+3593636 None:intergenic
TGGGAGAGGACGTGGGAACT+GGG 0.512185 5_4:-3593333 Msa0830540:CDS
AACTGGGAAATCCAAGAAGA+AGG 0.515282 5_4:-3592157 Msa0830540:CDS
GTGTTCCTTGCTGCCAAACA+AGG 0.525261 5_4:-3593641 Msa0830540:CDS
TTTCAGGCTACTCTAGGCGT+TGG 0.525313 5_4:-3593724 Msa0830540:intron
TATAACCAATCCATTTGGAT+AGG 0.528390 5_4:+3590930 None:intergenic
ACAAAATACCTCCACTACTC+CGG 0.530163 5_4:+3593218 None:intergenic
CAATGCAAAAGTGATTCATT+GGG 0.534185 5_4:-3593352 Msa0830540:intron
GTGGTGAGTGTCAATAATTA+AGG 0.537070 5_4:+3589782 None:intergenic
ATGAGAGACATTGTTCTGGT+TGG 0.538743 5_4:+3591267 None:intergenic
GCACCCTTTAAGTTTCGACT+TGG 0.542842 5_4:-3590665 Msa0830540:intron
AGACCAAAACGAAGCCGAAG+CGG 0.546308 5_4:+3590131 None:intergenic
GTGAATTTCCTACCAAACTT+CGG 0.546783 5_4:+3590044 None:intergenic
GTTTGGTGAGGATGACTTGG+TGG 0.548655 5_4:-3593593 Msa0830540:CDS
TGTACACATCTTCGCCAGTC+CGG 0.549126 5_4:-3593237 Msa0830540:CDS
CCTAAAACATAAAGGAATGG+AGG 0.549533 5_4:+3589911 None:intergenic
AAGGCTGAAACAGAAACAAA+AGG 0.552836 5_4:-3592198 Msa0830540:CDS
TCGTCAGTACTATACGGAAC+CGG 0.556211 5_4:+3594827 None:intergenic
CACCAAACTTAAGATTCAAA+GGG 0.556434 5_4:+3593608 None:intergenic
GTTATAGAGGACATATCTAT+GGG 0.558134 5_4:-3590913 Msa0830540:CDS
CAAAAGTGATTCATTGGGAG+AGG 0.559260 5_4:-3593347 Msa0830540:intron
GAGAACCTATCCAAATGGAT+TGG 0.560765 5_4:-3590935 Msa0830540:CDS
TCTTCGCCAGTCCGGAGTAG+TGG 0.561425 5_4:-3593229 Msa0830540:CDS
TAAGTTTGGTGAGGATGACT+TGG 0.562154 5_4:-3593596 Msa0830540:CDS
GGAGGAAAGTGCTCATGTAA+AGG 0.563185 5_4:-3591341 Msa0830540:CDS
TCACCTAAAACATAAAGGAA+TGG 0.566530 5_4:+3589908 None:intergenic
AGGATGAGCAGCTGCAAGAT+GGG 0.567860 5_4:-3592080 Msa0830540:intron
AGGTGTAGGACAAGTCATCA+AGG 0.569087 5_4:-3590559 Msa0830540:CDS
TTGGTGGCATTCTCGGTCGT+CGG 0.569677 5_4:-3593577 Msa0830540:CDS
TCAGGGATTGAAGTGAAACC+TGG 0.572044 5_4:-3594854 Msa0830540:intron
AATAATAAATGCAATTTGTG+TGG 0.574053 5_4:+3589763 None:intergenic
CTAAAACATAAAGGAATGGA+GGG 0.574988 5_4:+3589912 None:intergenic
TTTGAATCTTAAGTTTGGTG+AGG 0.577124 5_4:-3593605 Msa0830540:CDS
CAAGTTGAAAGATCATGGTA+AGG 0.578952 5_4:-3591362 Msa0830540:CDS
AATGTCTCTCATGCAAAGGA+TGG 0.579761 5_4:-3591256 Msa0830540:CDS
CCTGTAAAGTCTAGCGACAA+AGG 0.580442 5_4:+3590069 None:intergenic
TTGGAAAGTGAAGATGAAGA+TGG 0.586293 5_4:-3592264 Msa0830540:CDS
AGCTAAATCTGAGTCTCAGA+AGG 0.587477 5_4:-3592217 Msa0830540:CDS
GATATGGTGACAAACGTGTT+GGG 0.590168 5_4:-3590230 Msa0830540:CDS
AGGAAAGCTTCACGTCACTC+AGG 0.592401 5_4:-3594798 Msa0830540:intron
ATATCTATGGGCAAACCAGA+TGG 0.595038 5_4:-3590901 Msa0830540:CDS
GGTGTAGGACAAGTCATCAA+GGG 0.596781 5_4:-3590558 Msa0830540:CDS
AATGAAATTCAACTTCGTCA+GGG 0.600359 5_4:+3595014 None:intergenic
GAGGATGAGCAGCTGCAAGA+TGG 0.601018 5_4:-3592081 Msa0830540:CDS
GGACGTGGGAACTGGGTCAG+AGG 0.603866 5_4:-3593326 Msa0830540:CDS
AGGACAAGTCATCAAGGGGT+GGG 0.609520 5_4:-3590553 Msa0830540:CDS
ATACCTCCACTACTCCGGAC+TGG 0.610928 5_4:+3593223 None:intergenic
GAACAATGTCTCTCATGCAA+AGG 0.611604 5_4:-3591260 Msa0830540:CDS
TACAGGAGCCGAAGTTTGGT+AGG 0.613619 5_4:-3590052 Msa0830540:three_prime_UTR
TAGGACAAGTCATCAAGGGG+TGG 0.614183 5_4:-3590554 Msa0830540:CDS
TCGCCAGTCCGGAGTAGTGG+AGG 0.614191 5_4:-3593226 Msa0830540:intron
GTTGAAAGATCATGGTAAGG+AGG 0.614660 5_4:-3591359 Msa0830540:CDS
ATGCAAAGGATGGAGATGAT+GGG 0.616446 5_4:-3591246 Msa0830540:CDS
ATTTCATACCCCATAGATGG+TGG 0.621077 5_4:+3590385 None:intergenic
AGATATGGTGACAAACGTGT+TGG 0.627092 5_4:-3590231 Msa0830540:CDS
TCCGTATAGTACTGACGATG+TGG 0.632230 5_4:-3594822 Msa0830540:CDS
TCTAGGCGTTGGTCCATCGA+CGG 0.649382 5_4:-3593713 Msa0830540:CDS
TATAGTACTGACGATGTGGA+AGG 0.650155 5_4:-3594818 Msa0830540:CDS
CTGACGACAATGGGATTCTG+GGG 0.658715 5_4:-3594983 Msa0830540:intron
AAAAGTTCAAGCTGTCGATG+AGG 0.663434 5_4:-3592100 Msa0830540:CDS
GTGTAGGACAAGTCATCAAG+GGG 0.668593 5_4:-3590557 Msa0830540:CDS
GCCAGATGAAAAGTCTGAGG+AGG 0.674614 5_4:-3591302 Msa0830540:CDS
CAAAGGCCAATGAATATGCG+AGG 0.674978 5_4:+3590086 None:intergenic
TGTGCCAGATGAAAAGTCTG+AGG 0.679651 5_4:-3591305 Msa0830540:CDS
GATTCATTGGGAGAGGACGT+GGG 0.690481 5_4:-3593340 Msa0830540:CDS
GCTCACTTGAAAGAGAAACC+CGG 0.694878 5_4:-3592336 Msa0830540:CDS
TTACAATTCCACCATCTATG+GGG 0.701878 5_4:-3590393 Msa0830540:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATTTATTTATGAATC+CGG + chr5_4:3591823-3591842 None:intergenic 10.0%
!! CAATTATTATTTATCATCTA+AGG + chr5_4:3590330-3590349 None:intergenic 15.0%
!! CAAATAAATGCATATTATAT+AGG + chr5_4:3591000-3591019 None:intergenic 15.0%
!! ACGTTAACTAAAATATTATA+GGG - chr5_4:3591872-3591891 Msa0830540:intron 15.0%
!! TAATTACTAAACACTTTAAT+AGG + chr5_4:3591974-3591993 None:intergenic 15.0%
!!! TTAAATTTTAAAAATGTTCC+TGG + chr5_4:3592007-3592026 None:intergenic 15.0%
!!! TTTGAAAATTCAAAAACTTT+TGG - chr5_4:3592965-3592984 Msa0830540:intron 15.0%
!!! CAATTTTTAAAAAACAGATT+TGG + chr5_4:3593345-3593364 None:intergenic 15.0%
!!! ATTTATCTTTTATTTTCTTC+AGG - chr5_4:3594421-3594440 Msa0830540:intron 15.0%
!!! TTTATCTTTTATTTTCTTCA+GGG - chr5_4:3594422-3594441 Msa0830540:intron 15.0%
!! TTAAGGAATCATTAAATTAA+AGG - chr5_4:3594989-3595008 Msa0830540:exon 15.0%
!! AAATTAAAGGAATAATTGTA+TGG - chr5_4:3595002-3595021 Msa0830540:five_prime_UTR 15.0%
!!! AATTTTGAGAAAAAAAATCA+AGG + chr5_4:3595054-3595073 None:intergenic 15.0%
!! AAACAGAAATAAGTGATTAA+CGG + chr5_4:3589931-3589950 None:intergenic 20.0%
!! TGATAAGTTCAAATACAAAA+CGG + chr5_4:3589992-3590011 None:intergenic 20.0%
!!! TTTTGTATTTGAACTTATCA+GGG - chr5_4:3589992-3590011 Msa0830540:three_prime_UTR 20.0%
!!! TGATGTTTTTACTGTTTATT+AGG - chr5_4:3590193-3590212 Msa0830540:CDS 20.0%
!!! GATGTTTTTACTGTTTATTA+GGG - chr5_4:3590194-3590213 Msa0830540:CDS 20.0%
!! AATTGAAGTATATGCATTAT+TGG - chr5_4:3590350-3590369 Msa0830540:intron 20.0%
!! GAATTAATGTGTTGAATTTA+TGG + chr5_4:3590504-3590523 None:intergenic 20.0%
!! TAAATTCAACACATTAATTC+TGG - chr5_4:3590504-3590523 Msa0830540:intron 20.0%
!! CACGTTAACTAAAATATTAT+AGG - chr5_4:3591871-3591890 Msa0830540:intron 20.0%
!! CGTTAACTAAAATATTATAG+GGG - chr5_4:3591873-3591892 Msa0830540:intron 20.0%
!!! AGTAATTAATTTAGTTTTCC+AGG - chr5_4:3591986-3592005 Msa0830540:intron 20.0%
!! AAAGAAAACTGAAAAATACA+AGG - chr5_4:3592315-3592334 Msa0830540:CDS 20.0%
!! AATAAATAATCCAGATACTT+TGG - chr5_4:3592898-3592917 Msa0830540:intron 20.0%
!! ATAAATAATCCAGATACTTT+GGG - chr5_4:3592899-3592918 Msa0830540:intron 20.0%
!!! AAAATTCAAAAACTTTTGCT+AGG - chr5_4:3592969-3592988 Msa0830540:intron 20.0%
!!! AAAATTCAAAAACTTTTGGT+AGG - chr5_4:3593067-3593086 Msa0830540:intron 20.0%
!!! TTTGGTACATTTTTCATTAA+TGG - chr5_4:3593187-3593206 Msa0830540:intron 20.0%
!! CAATATTGTACATTTCTAAA+TGG + chr5_4:3593231-3593250 None:intergenic 20.0%
!! GAATTAAAAGACAAACTATT+TGG + chr5_4:3593317-3593336 None:intergenic 20.0%
!! AAGAAACTGGATTATAAAAT+AGG + chr5_4:3594083-3594102 None:intergenic 20.0%
!! CAAACGATAAATATAGATAA+AGG + chr5_4:3594283-3594302 None:intergenic 20.0%
!! AATCTTATTACGTTATTACT+AGG + chr5_4:3594366-3594385 None:intergenic 20.0%
!! AATAATAAATGCAATTTGTG+TGG + chr5_4:3595103-3595122 None:intergenic 20.0%
!!! CATTTTTAGGGTTTAAAGAA+AGG - chr5_4:3589816-3589835 Msa0830540:three_prime_UTR 25.0%
!! GTTTTGTATTTGAACTTATC+AGG - chr5_4:3589991-3590010 Msa0830540:three_prime_UTR 25.0%
! GTATATCCATGTAATTCTAT+AGG + chr5_4:3590398-3590417 None:intergenic 25.0%
! ACGACAAAATTATCACAAAA+AGG + chr5_4:3590558-3590577 None:intergenic 25.0%
!! TGATAATTTTGTCGTTGAAT+TGG - chr5_4:3590563-3590582 Msa0830540:intron 25.0%
!! AATAATTTCACGACTTTTCT+TGG - chr5_4:3590620-3590639 Msa0830540:intron 25.0%
! AAGTCAATAACTAAAAACCA+AGG + chr5_4:3590883-3590902 None:intergenic 25.0%
!!! TGACAAATCATTTTTATCAG+CGG + chr5_4:3590927-3590946 None:intergenic 25.0%
! AAATCATATTGGACTTCAAA+AGG + chr5_4:3591073-3591092 None:intergenic 25.0%
!! TGAAGTCCAATATGATTTTA+TGG - chr5_4:3591075-3591094 Msa0830540:CDS 25.0%
! TCGTAACCATAAAATCATAT+TGG + chr5_4:3591084-3591103 None:intergenic 25.0%
! ACAAAAGCTAGTTATTCAAA+AGG + chr5_4:3591385-3591404 None:intergenic 25.0%
!!! TTTGAATAACTAGCTTTTGT+TGG - chr5_4:3591385-3591404 Msa0830540:CDS 25.0%
!!! TCTGAATTTGATAGTGAAAA+TGG - chr5_4:3591565-3591584 Msa0830540:intron 25.0%
! TTATATGTATGAGCATTTGA+TGG + chr5_4:3591695-3591714 None:intergenic 25.0%
! TGGAAAAAACATCATGTTAT+TGG + chr5_4:3591763-3591782 None:intergenic 25.0%
!!! GATGTTTTTTCCAGTAAATT+TGG - chr5_4:3591770-3591789 Msa0830540:intron 25.0%
! TTAATAGGATTAAGATTCCT+AGG + chr5_4:3591959-3591978 None:intergenic 25.0%
! TTATTCCCATGTTAAAGTAT+GGG + chr5_4:3592121-3592140 None:intergenic 25.0%
! TTTATTCCCATGTTAAAGTA+TGG + chr5_4:3592122-3592141 None:intergenic 25.0%
! TTTAACATGGGAATAAAAAG+TGG - chr5_4:3592125-3592144 Msa0830540:CDS 25.0%
!! AGTTTTCATAAATTATGCCT+AGG + chr5_4:3592165-3592184 None:intergenic 25.0%
! ATGAAAACTTGAAACAAACA+TGG - chr5_4:3592176-3592195 Msa0830540:CDS 25.0%
! TGAAAACTTGAAACAAACAT+GGG - chr5_4:3592177-3592196 Msa0830540:CDS 25.0%
! AACAAGCTCAAAAAAAAACT+GGG - chr5_4:3592690-3592709 Msa0830540:intron 25.0%
!! TAACTTTTTAATAATCCACG+TGG - chr5_4:3592815-3592834 Msa0830540:intron 25.0%
!!! AAACAGTTTTTCAGATACTT+TGG - chr5_4:3592844-3592863 Msa0830540:intron 25.0%
!!! AACAGTTTTTCAGATACTTT+GGG - chr5_4:3592845-3592864 Msa0830540:intron 25.0%
! TTTCTATTCCTAAATCAAAC+AGG + chr5_4:3592871-3592890 None:intergenic 25.0%
!!! TTTTGAGAACTAAATCAAAC+AGG + chr5_4:3592925-3592944 None:intergenic 25.0%
!! AAAACTGAAACAGATTTTAG+TGG - chr5_4:3593148-3593167 Msa0830540:intron 25.0%
!!! AAACTGAAACAGATTTTAGT+GGG - chr5_4:3593149-3593168 Msa0830540:intron 25.0%
! ACGTTTCTGATAATAATTTC+AGG - chr5_4:3593458-3593477 Msa0830540:intron 25.0%
!! AAAAACAAGTTGAAAGATCA+TGG - chr5_4:3593496-3593515 Msa0830540:intron 25.0%
!! AAAATATTTGACTCGTGTAT+TGG - chr5_4:3594171-3594190 Msa0830540:intron 25.0%
! TATCTATATTTATCGTTTGC+AGG - chr5_4:3594284-3594303 Msa0830540:intron 25.0%
! ATGCCATATTCTTTGTTAAA+TGG - chr5_4:3594564-3594583 Msa0830540:intron 25.0%
! TGCCATATTCTTTGTTAAAT+GGG - chr5_4:3594565-3594584 Msa0830540:intron 25.0%
! ATCCCATTTAACAAAGAATA+TGG + chr5_4:3594570-3594589 None:intergenic 25.0%
!! AATATAAGCCATGAATTTTG+TGG + chr5_4:3594665-3594684 None:intergenic 25.0%
!!! ATTTAAAATTTTTGCCGCTT+CGG - chr5_4:3594718-3594737 Msa0830540:intron 25.0%
! AAAAATCAAGGAGTAAGTAA+GGG + chr5_4:3595042-3595061 None:intergenic 25.0%
! AAAAAATCAAGGAGTAAGTA+AGG + chr5_4:3595043-3595062 None:intergenic 25.0%
!!! TTAGCGTTTTGGTTATTTGA+AGG + chr5_4:3589773-3589792 None:intergenic 30.0%
!!! AAAAATGAGTCTGTCGTTTT+GGG + chr5_4:3589803-3589822 None:intergenic 30.0%
!! TAAAAATGAGTCTGTCGTTT+TGG + chr5_4:3589804-3589823 None:intergenic 30.0%
!! AAAACGACAGACTCATTTTT+AGG - chr5_4:3589803-3589822 Msa0830540:three_prime_UTR 30.0%
!! AAACGACAGACTCATTTTTA+GGG - chr5_4:3589804-3589823 Msa0830540:three_prime_UTR 30.0%
AATGAAATTCAACTTCGTCA+GGG + chr5_4:3589852-3589871 None:intergenic 30.0%
AAATGAAATTCAACTTCGTC+AGG + chr5_4:3589853-3589872 None:intergenic 30.0%
!!! AGCTTTGTTTTCATTGAATC+TGG - chr5_4:3590159-3590178 Msa0830540:exon 30.0%
AACCATTCGTTGTATAATCT+AGG - chr5_4:3590222-3590241 Msa0830540:CDS 30.0%
AACCTAGATTATACAACGAA+TGG + chr5_4:3590227-3590246 None:intergenic 30.0%
TGCATTCCTATAGAATTACA+TGG - chr5_4:3590389-3590408 Msa0830540:intron 30.0%
!!! TGGGCTTATTTTTTAGCTTA+TGG + chr5_4:3590850-3590869 None:intergenic 30.0%
AAAAAATAAGCCCATCCAAA+TGG - chr5_4:3590856-3590875 Msa0830540:intron 30.0%
AAAAATAAGCCCATCCAAAT+GGG - chr5_4:3590857-3590876 Msa0830540:intron 30.0%
TAGTATTTGCTTTGCTTTGT+TGG - chr5_4:3590952-3590971 Msa0830540:CDS 30.0%
ATGCATTTATTTGCTTGCAT+TGG - chr5_4:3591007-3591026 Msa0830540:CDS 30.0%
CACCAAACTTAAGATTCAAA+GGG + chr5_4:3591258-3591277 None:intergenic 30.0%
TCACCAAACTTAAGATTCAA+AGG + chr5_4:3591259-3591278 None:intergenic 30.0%
! TTTGAATCTTAAGTTTGGTG+AGG - chr5_4:3591258-3591277 Msa0830540:CDS 30.0%
ACAATGCAAAAGTGATTCAT+TGG - chr5_4:3591510-3591529 Msa0830540:intron 30.0%
CAATGCAAAAGTGATTCATT+GGG - chr5_4:3591511-3591530 Msa0830540:intron 30.0%
AAGGATTAAATTTACAGTCC+TGG - chr5_4:3591908-3591927 Msa0830540:intron 30.0%
AGGATTAAATTTACAGTCCT+GGG - chr5_4:3591909-3591928 Msa0830540:intron 30.0%
AAGAGTTAAAATAGTGTGAG+TGG - chr5_4:3592050-3592069 Msa0830540:intron 30.0%
AGAGTTAAAATAGTGTGAGT+GGG - chr5_4:3592051-3592070 Msa0830540:intron 30.0%
AAGATTCCCATACTTTAACA+TGG - chr5_4:3592112-3592131 Msa0830540:CDS 30.0%
AGATTCCCATACTTTAACAT+GGG - chr5_4:3592113-3592132 Msa0830540:CDS 30.0%
GAACAAGCTCAAAAAAAAAC+TGG - chr5_4:3592689-3592708 Msa0830540:intron 30.0%
!!! CACTTCCAATTTTGTTTTCA+CGG + chr5_4:3593256-3593275 None:intergenic 30.0%
CCAACACAAATATAGACAAA+GGG + chr5_4:3593418-3593437 None:intergenic 30.0%
TCCAACACAAATATAGACAA+AGG + chr5_4:3593419-3593438 None:intergenic 30.0%
AAACTATCCAATGATGAGTA+AGG - chr5_4:3593640-3593659 Msa0830540:CDS 30.0%
AACTATCCAATGATGAGTAA+GGG - chr5_4:3593641-3593660 Msa0830540:CDS 30.0%
GAAGAATACAAAACAGAGAA+GGG + chr5_4:3593691-3593710 None:intergenic 30.0%
AGAAGAATACAAAACAGAGA+AGG + chr5_4:3593692-3593711 None:intergenic 30.0%
TGCTAACTGTTAAGAGTTTA+TGG - chr5_4:3593727-3593746 Msa0830540:intron 30.0%
AAAGAAGAAAAAGACCAAAG+AGG - chr5_4:3593793-3593812 Msa0830540:intron 30.0%
TATAACCAATCCATTTGGAT+AGG + chr5_4:3593936-3593955 None:intergenic 30.0%
GTTATAGAGGACATATCTAT+GGG - chr5_4:3593950-3593969 Msa0830540:intron 30.0%
GGTCAAACAAAATTACACAT+TGG + chr5_4:3594062-3594081 None:intergenic 30.0%
ATAATCCAGTTTCTTCTGAT+AGG - chr5_4:3594088-3594107 Msa0830540:intron 30.0%
! GAAATCCTTGTTTGATATTC+AGG - chr5_4:3594110-3594129 Msa0830540:intron 30.0%
ATACCAAGTCGAAACTTAAA+GGG + chr5_4:3594204-3594223 None:intergenic 30.0%
!!! TTTTATTTTCTTCAGGGATG+AGG - chr5_4:3594428-3594447 Msa0830540:intron 30.0%
!! TTTATTTTCTTCAGGGATGA+GGG - chr5_4:3594429-3594448 Msa0830540:intron 30.0%
GAAATTGTCCAATATGTCTT+TGG - chr5_4:3594496-3594515 Msa0830540:intron 30.0%
AAATCACACCAAAGACATAT+TGG + chr5_4:3594507-3594526 None:intergenic 30.0%
AAAGAATATGGCATCTAACA+CGG + chr5_4:3594558-3594577 None:intergenic 30.0%
TTAAATGGGATGACTTTGAT+TGG - chr5_4:3594579-3594598 Msa0830540:intron 30.0%
GCTTATATTTGATGTTGAGT+TGG - chr5_4:3594676-3594695 Msa0830540:intron 30.0%
!! ATATTTGATGTTGAGTTGGT+TGG - chr5_4:3594680-3594699 Msa0830540:intron 30.0%
! CGGCAAAAATTTTAAATCAG+CGG + chr5_4:3594715-3594734 None:intergenic 30.0%
TTTCTTTGTCCGTATAATGT+TGG - chr5_4:3594890-3594909 Msa0830540:intron 30.0%
CTAAAACATAAAGGAATGGA+GGG + chr5_4:3594954-3594973 None:intergenic 30.0%
TCACCTAAAACATAAAGGAA+TGG + chr5_4:3594958-3594977 None:intergenic 30.0%
TGCAATCACCTAAAACATAA+AGG + chr5_4:3594963-3594982 None:intergenic 30.0%
AGGTGATTGCAGAAATATTA+AGG - chr5_4:3594972-3594991 Msa0830540:intron 30.0%
!! TTGGTTATTTGAAGGTGCTT+CGG + chr5_4:3589765-3589784 None:intergenic 35.0%
! TGGGATTACAATTAGCGTTT+TGG + chr5_4:3589784-3589803 None:intergenic 35.0%
!! TTTTTCAACACTGACGACAA+TGG - chr5_4:3589870-3589889 Msa0830540:three_prime_UTR 35.0%
! TTTTCAACACTGACGACAAT+GGG - chr5_4:3589871-3589890 Msa0830540:three_prime_UTR 35.0%
ACTTCAAATTCAAACGCAGA+TGG + chr5_4:3590126-3590145 None:intergenic 35.0%
TATACTTGAAATGACACTCG+AGG - chr5_4:3590413-3590432 Msa0830540:CDS 35.0%
ATACTTGAAATGACACTCGA+GGG - chr5_4:3590414-3590433 Msa0830540:CDS 35.0%
!! TTGTCGTTGAATTGGTTTGA+TGG - chr5_4:3590571-3590590 Msa0830540:intron 35.0%
!! GAATTGGTTTGATGGTTACT+TGG - chr5_4:3590579-3590598 Msa0830540:intron 35.0%
AAAAATGATTCGTGCACGTT+TGG - chr5_4:3590664-3590683 Msa0830540:intron 35.0%
! TGTCTGGAGTTTGGTTAATT+GGG - chr5_4:3591039-3591058 Msa0830540:CDS 35.0%
!! TAGCCTGAAATTTTAGAGGA+CGG + chr5_4:3591129-3591148 None:intergenic 35.0%
! AGAGTAGCCTGAAATTTTAG+AGG + chr5_4:3591133-3591152 None:intergenic 35.0%
CTAAAATTTCAGGCTACTCT+AGG - chr5_4:3591133-3591152 Msa0830540:intron 35.0%
AGCAAGGAACACAAAAAAAC+TGG + chr5_4:3591214-3591233 None:intergenic 35.0%
TGCCCTTTGAATCTTAAGTT+TGG - chr5_4:3591253-3591272 Msa0830540:CDS 35.0%
GCACAAAATAACCAGAAAGA+TGG + chr5_4:3591324-3591343 None:intergenic 35.0%
!!! CTTTTTTGACGATAGCGATA+TGG - chr5_4:3591600-3591619 Msa0830540:intron 35.0%
TCATTCTGGACCAAATTTAC+TGG + chr5_4:3591783-3591802 None:intergenic 35.0%
AAATTTGGTCCAGAATGATC+TGG - chr5_4:3591785-3591804 Msa0830540:intron 35.0%
AATTTGGTCCAGAATGATCT+GGG - chr5_4:3591786-3591805 Msa0830540:intron 35.0%
TTCCTAGGAATAATGTTCCA+GGG + chr5_4:3591944-3591963 None:intergenic 35.0%
ATTCCTAGGAATAATGTTCC+AGG + chr5_4:3591945-3591964 None:intergenic 35.0%
TTTATTCCCATGGGAATAAG+AGG + chr5_4:3592093-3592112 None:intergenic 35.0%
! TGGGAATCTTTTATTCCCAT+GGG + chr5_4:3592102-3592121 None:intergenic 35.0%
! ATGGGAATCTTTTATTCCCA+TGG + chr5_4:3592103-3592122 None:intergenic 35.0%
GGATTGCAGAATGTAACATT+GGG + chr5_4:3592214-3592233 None:intergenic 35.0%
TGGATTGCAGAATGTAACAT+TGG + chr5_4:3592215-3592234 None:intergenic 35.0%
!! AAACACCCCCTAAGTTTTAT+CGG - chr5_4:3592241-3592260 Msa0830540:CDS 35.0%
GTATACCGATAAAACTTAGG+GGG + chr5_4:3592249-3592268 None:intergenic 35.0%
GGTATACCGATAAAACTTAG+GGG + chr5_4:3592250-3592269 None:intergenic 35.0%
GGGTATACCGATAAAACTTA+GGG + chr5_4:3592251-3592270 None:intergenic 35.0%
TGGGTATACCGATAAAACTT+AGG + chr5_4:3592252-3592271 None:intergenic 35.0%
ATGAGTGGGAGTAAACAATA+AGG + chr5_4:3592275-3592294 None:intergenic 35.0%
CATTCCTGATGCATGAAAAT+AGG - chr5_4:3592292-3592311 Msa0830540:CDS 35.0%
! CTTTCCTATTTTCATGCATC+AGG + chr5_4:3592299-3592318 None:intergenic 35.0%
TCACGACTTCAAAAAAGGTA+AGG + chr5_4:3592430-3592449 None:intergenic 35.0%
! TTTTTCTTCGATTGCTTTGC+TGG + chr5_4:3592497-3592516 None:intergenic 35.0%
AGCAAAGCAATCGAAGAAAA+AGG - chr5_4:3592496-3592515 Msa0830540:intron 35.0%
AGGTGACAATAAGTTTGTCT+TGG - chr5_4:3592580-3592599 Msa0830540:intron 35.0%
TTGGAAAGTGAAGATGAAGA+TGG - chr5_4:3592599-3592618 Msa0830540:intron 35.0%
!! AGATTTAGCTTTGTCTGAAG+TGG + chr5_4:3592636-3592655 None:intergenic 35.0%
AAGGCTGAAACAGAAACAAA+AGG - chr5_4:3592665-3592684 Msa0830540:intron 35.0%
! AACATCTTTTGCCTTCTTCT+TGG + chr5_4:3592720-3592739 None:intergenic 35.0%
!!! AAACTGTTTTTGAATCCACG+TGG + chr5_4:3592833-3592852 None:intergenic 35.0%
! ACTCCTCTATTCATCAGTTT+TGG - chr5_4:3593020-3593039 Msa0830540:intron 35.0%
! CTCCTCTATTCATCAGTTTT+GGG - chr5_4:3593021-3593040 Msa0830540:intron 35.0%
TTCCCAAAACTGATGAATAG+AGG + chr5_4:3593026-3593045 None:intergenic 35.0%
! ACTCCTCTATTCATCAGTTT+TGG - chr5_4:3593020-3593039 Msa0830540:intron 35.0%
! CTCCTCTATTCATCAGTTTT+GGG - chr5_4:3593021-3593040 Msa0830540:intron 35.0%
TTCCCAAAACTGATGAATAG+AGG + chr5_4:3593026-3593045 None:intergenic 35.0%
!!! GAAACAGATTTTAGTGGGTT+TGG - chr5_4:3593154-3593173 Msa0830540:intron 35.0%
!!! GGGTTTGGTTTTCAGTTTTT+TGG - chr5_4:3593169-3593188 Msa0830540:intron 35.0%
TTGCTCCGTGAAAACAAAAT+TGG - chr5_4:3593248-3593267 Msa0830540:CDS 35.0%
TAAAGCTGTTGTAGAGATGT+TGG + chr5_4:3593281-3593300 None:intergenic 35.0%
CCCTTTGTCTATATTTGTGT+TGG - chr5_4:3593415-3593434 Msa0830540:intron 35.0%
! CAAGTTGAAAGATCATGGTA+AGG - chr5_4:3593501-3593520 Msa0830540:intron 35.0%
TGAAAACCCTTACTCATCAT+TGG + chr5_4:3593650-3593669 None:intergenic 35.0%
!!! TCTTGTTTTTCTTCTCAACG+AGG + chr5_4:3593769-3593788 None:intergenic 35.0%
!! TCCAAATGGATTGGTTATAG+AGG - chr5_4:3593937-3593956 Msa0830540:intron 35.0%
TCCTCTATAACCAATCCATT+TGG + chr5_4:3593941-3593960 None:intergenic 35.0%
GGTTATAGAGGACATATCTA+TGG - chr5_4:3593949-3593968 Msa0830540:intron 35.0%
GATTTCCTATCAGAAGAAAC+TGG + chr5_4:3594096-3594115 None:intergenic 35.0%
ACTGACCTGAATATCAAACA+AGG + chr5_4:3594118-3594137 None:intergenic 35.0%
CATACCAAGTCGAAACTTAA+AGG + chr5_4:3594205-3594224 None:intergenic 35.0%
TATTTATCGTTTGCAGGTGT+AGG - chr5_4:3594290-3594309 Msa0830540:intron 35.0%
ACTTACAATTCCACCATCTA+TGG - chr5_4:3594468-3594487 Msa0830540:intron 35.0%
CTTACAATTCCACCATCTAT+GGG - chr5_4:3594469-3594488 Msa0830540:intron 35.0%
TTACAATTCCACCATCTATG+GGG - chr5_4:3594470-3594489 Msa0830540:intron 35.0%
ACAATTTCATACCCCATAGA+TGG + chr5_4:3594484-3594503 None:intergenic 35.0%
AAGAATATGGCATCTAACAC+GGG + chr5_4:3594557-3594576 None:intergenic 35.0%
TGTTCGTTGTTATGCAGATA+TGG - chr5_4:3594617-3594636 Msa0830540:intron 35.0%
GGAGTATACCACAAAATTCA+TGG - chr5_4:3594654-3594673 Msa0830540:intron 35.0%
GTGAATTTCCTACCAAACTT+CGG + chr5_4:3594822-3594841 None:intergenic 35.0%
TCCAGACAACCAACATTATA+CGG + chr5_4:3594902-3594921 None:intergenic 35.0%
CCTAAAACATAAAGGAATGG+AGG + chr5_4:3594955-3594974 None:intergenic 35.0%
! CCTCCATTCCTTTATGTTTT+AGG - chr5_4:3594952-3594971 Msa0830540:intron 35.0%
GTGGTGAGTGTCAATAATTA+AGG + chr5_4:3595084-3595103 None:intergenic 35.0%
TCCACATCGTCAGTACTATA+CGG + chr5_4:3590045-3590064 None:intergenic 40.0%
!! TATAGTACTGACGATGTGGA+AGG - chr5_4:3590045-3590064 Msa0830540:three_prime_UTR 40.0%
TTGTACATTCCTTCTGCACA+AGG - chr5_4:3590263-3590282 Msa0830540:intron 40.0%
TACTTGAAATGACACTCGAG+GGG - chr5_4:3590415-3590434 Msa0830540:CDS 40.0%
! TTGATGGTTACTTGGCACTT+CGG - chr5_4:3590587-3590606 Msa0830540:intron 40.0%
ACTAAAAACCAAGGCCCATT+TGG + chr5_4:3590874-3590893 None:intergenic 40.0%
! GTGTCTGGAGTTTGGTTAAT+TGG - chr5_4:3591038-3591057 Msa0830540:CDS 40.0%
!! TTCCCGTCCTCTAAAATTTC+AGG - chr5_4:3591123-3591142 Msa0830540:intron 40.0%
!! AGCCTGAAATTTTAGAGGAC+GGG + chr5_4:3591128-3591147 None:intergenic 40.0%
! TAAGTTTGGTGAGGATGACT+TGG - chr5_4:3591267-3591286 Msa0830540:CDS 40.0%
AACCAGAAAGATGGATGCTT+CGG + chr5_4:3591315-3591334 None:intergenic 40.0%
CAAAAGTGATTCATTGGGAG+AGG - chr5_4:3591516-3591535 Msa0830540:intron 40.0%
ACAAAATACCTCCACTACTC+CGG + chr5_4:3591648-3591667 None:intergenic 40.0%
! ATAGGGGTGTGTTTGTTTCA+AGG - chr5_4:3591889-3591908 Msa0830540:intron 40.0%
TTCCCTGGAACATTATTCCT+AGG - chr5_4:3591939-3591958 Msa0830540:intron 40.0%
TAGTGTGAGTGGGAAGTTAT+AGG - chr5_4:3592061-3592080 Msa0830540:intron 40.0%
TGGTTACCTCTTATTCCCAT+GGG - chr5_4:3592084-3592103 Msa0830540:CDS 40.0%
TGGAAAAGTCATGTGTACCT+AGG - chr5_4:3592145-3592164 Msa0830540:CDS 40.0%
TGAAACAAACATGGGAACGT+AGG - chr5_4:3592185-3592204 Msa0830540:CDS 40.0%
!!! CTTAGGGGGTGTTTGTTTTA+TGG + chr5_4:3592235-3592254 None:intergenic 40.0%
GTGGGAGTAAACAATAAGGT+GGG + chr5_4:3592271-3592290 None:intergenic 40.0%
AGTGGGAGTAAACAATAAGG+TGG + chr5_4:3592272-3592291 None:intergenic 40.0%
TTCATGCATCAGGAATGAGT+GGG + chr5_4:3592289-3592308 None:intergenic 40.0%
TTTCATGCATCAGGAATGAG+TGG + chr5_4:3592290-3592309 None:intergenic 40.0%
CTCGATCACGACTTCAAAAA+AGG + chr5_4:3592435-3592454 None:intergenic 40.0%
!!! CTTTTTTGAAGTCGTGATCG+AGG - chr5_4:3592433-3592452 Msa0830540:intron 40.0%
!! ATTTTCAGGCTGATTGTCGT+CGG + chr5_4:3592465-3592484 None:intergenic 40.0%
! GCTGGATTATCTCCATTTTC+AGG + chr5_4:3592479-3592498 None:intergenic 40.0%
TTGTCACCTCTAATGACAAC+TGG + chr5_4:3592569-3592588 None:intergenic 40.0%
! CTTTGTCTGAAGTGGAAATC+GGG + chr5_4:3592628-3592647 None:intergenic 40.0%
! GCTTTGTCTGAAGTGGAAAT+CGG + chr5_4:3592629-3592648 None:intergenic 40.0%
AGCTAAATCTGAGTCTCAGA+AGG - chr5_4:3592646-3592665 Msa0830540:intron 40.0%
AACTGGGAAATCCAAGAAGA+AGG - chr5_4:3592706-3592725 Msa0830540:intron 40.0%
AAAAGTTCAAGCTGTCGATG+AGG - chr5_4:3592763-3592782 Msa0830540:intron 40.0%
! ACTTTGGGCCTGTTTGATTT+AGG - chr5_4:3592860-3592879 Msa0830540:intron 40.0%
GTTGAAAGATCATGGTAAGG+AGG - chr5_4:3593504-3593523 Msa0830540:intron 40.0%
ATGAGAGACATTGTTCTGGT+TGG + chr5_4:3593599-3593618 None:intergenic 40.0%
TTGCATGAGAGACATTGTTC+TGG + chr5_4:3593603-3593622 None:intergenic 40.0%
GAACAATGTCTCTCATGCAA+AGG - chr5_4:3593603-3593622 Msa0830540:CDS 40.0%
AATGTCTCTCATGCAAAGGA+TGG - chr5_4:3593607-3593626 Msa0830540:CDS 40.0%
ATGCAAAGGATGGAGATGAT+GGG - chr5_4:3593617-3593636 Msa0830540:CDS 40.0%
AAAAAGACCAAAGAGGCTGA+AGG - chr5_4:3593800-3593819 Msa0830540:intron 40.0%
AACGTGAGAACCTATCCAAA+TGG - chr5_4:3593923-3593942 Msa0830540:intron 40.0%
GAGAACCTATCCAAATGGAT+TGG - chr5_4:3593928-3593947 Msa0830540:intron 40.0%
ATATCTATGGGCAAACCAGA+TGG - chr5_4:3593962-3593981 Msa0830540:intron 40.0%
AAGAGCTGATCTTGGAAAGA+AGG - chr5_4:3593988-3594007 Msa0830540:intron 40.0%
CAGGTCAGTGTTAGATATAC+CGG - chr5_4:3594129-3594148 Msa0830540:intron 40.0%
ATTTCATACCCCATAGATGG+TGG + chr5_4:3594481-3594500 None:intergenic 40.0%
AGATATGGTGACAAACGTGT+TGG - chr5_4:3594632-3594651 Msa0830540:intron 40.0%
GATATGGTGACAAACGTGTT+GGG - chr5_4:3594633-3594652 Msa0830540:intron 40.0%
TGCAAACCTCGCATATTCAT+TGG - chr5_4:3594771-3594790 Msa0830540:intron 40.0%
! TCCGTATAATGTTGGTTGTC+TGG - chr5_4:3594898-3594917 Msa0830540:intron 40.0%
! GGTTGTCTGGAGTAATTTGA+TGG - chr5_4:3594911-3594930 Msa0830540:intron 40.0%
ACTGACGACAATGGGATTCT+GGG - chr5_4:3589879-3589898 Msa0830540:three_prime_UTR 45.0%
TCAGGGATTGAAGTGAAACC+TGG - chr5_4:3590009-3590028 Msa0830540:three_prime_UTR 45.0%
TGAAGTGAAACCTGGCAATC+CGG - chr5_4:3590017-3590036 Msa0830540:three_prime_UTR 45.0%
TCGTCAGTACTATACGGAAC+CGG + chr5_4:3590039-3590058 None:intergenic 45.0%
!! TCCGTATAGTACTGACGATG+TGG - chr5_4:3590041-3590060 Msa0830540:three_prime_UTR 45.0%
CTTCACGTCACTCAGGTTAT+TGG - chr5_4:3590072-3590091 Msa0830540:three_prime_UTR 45.0%
GACACTTCTGATTGAAGGTG+CGG + chr5_4:3590294-3590313 None:intergenic 45.0%
! GCACCTTCAATCAGAAGTGT+CGG - chr5_4:3590293-3590312 Msa0830540:intron 45.0%
TGATTCGTGCACGTTTGGAT+TGG - chr5_4:3590669-3590688 Msa0830540:CDS 45.0%
AAACCAAGGCCCATTTGGAT+GGG + chr5_4:3590869-3590888 None:intergenic 45.0%
AAAACCAAGGCCCATTTGGA+TGG + chr5_4:3590870-3590889 None:intergenic 45.0%
AGCGGATGTATGCTAGATGA+AGG + chr5_4:3590909-3590928 None:intergenic 45.0%
! TTTGCTTGCATTGGCACTTG+AGG - chr5_4:3591016-3591035 Msa0830540:CDS 45.0%
! AGAATGCTTTTCTCCGTCGA+TGG + chr5_4:3591166-3591185 None:intergenic 45.0%
ACCAGAAAGATGGATGCTTC+GGG + chr5_4:3591314-3591333 None:intergenic 45.0%
GTAACACACCCAGATCATTC+TGG + chr5_4:3591797-3591816 None:intergenic 45.0%
TTCCAGGGAATGTTATACCC+AGG + chr5_4:3591929-3591948 None:intergenic 45.0%
TGTGAGTGGGAAGTTATAGG+TGG - chr5_4:3592064-3592083 Msa0830540:intron 45.0%
GTGGTTACCTCTTATTCCCA+TGG - chr5_4:3592083-3592102 Msa0830540:CDS 45.0%
!! TTTTCAGGCTGATTGTCGTC+GGG + chr5_4:3592464-3592483 None:intergenic 45.0%
GACGACAATCAGCCTGAAAA+TGG - chr5_4:3592464-3592483 Msa0830540:intron 45.0%
GCTCACTTGAAAGAGAAACC+CGG - chr5_4:3592527-3592546 Msa0830540:intron 45.0%
! TGGAAGCTGAGAACTTTTGC+CGG + chr5_4:3592549-3592568 None:intergenic 45.0%
CAGCTTCCAGTTGTCATTAG+AGG - chr5_4:3592560-3592579 Msa0830540:intron 45.0%
! TCAAACAGGCCCAAAGTATC+TGG + chr5_4:3592857-3592876 None:intergenic 45.0%
!! GGAGGAAAGTGCTCATGTAA+AGG - chr5_4:3593522-3593541 Msa0830540:CDS 45.0%
TGTGCCAGATGAAAAGTCTG+AGG - chr5_4:3593558-3593577 Msa0830540:CDS 45.0%
! ACCTCCTCAGACTTTTCATC+TGG + chr5_4:3593565-3593584 None:intergenic 45.0%
CATGCAAAGGATGGAGATGA+TGG - chr5_4:3593616-3593635 Msa0830540:CDS 45.0%
! TTAGATGGCTTGGCTTCAGT+TGG + chr5_4:3593905-3593924 None:intergenic 45.0%
GGATAGGTTCTCACGTTAGA+TGG + chr5_4:3593920-3593939 None:intergenic 45.0%
! AGATCAGCTCTTTTGCCATC+TGG + chr5_4:3593980-3593999 None:intergenic 45.0%
GATGGCAAAAGAGCTGATCT+TGG - chr5_4:3593980-3593999 Msa0830540:intron 45.0%
ACCGGCAAGCTACAAAAAGA+TGG - chr5_4:3594147-3594166 Msa0830540:intron 45.0%
!! CCCATCTTTTTGTAGCTTGC+CGG + chr5_4:3594151-3594170 None:intergenic 45.0%
CCGGCAAGCTACAAAAAGAT+GGG - chr5_4:3594148-3594167 Msa0830540:intron 45.0%
! GCACCCTTTAAGTTTCGACT+TGG - chr5_4:3594198-3594217 Msa0830540:intron 45.0%
AGGTGTAGGACAAGTCATCA+AGG - chr5_4:3594304-3594323 Msa0830540:intron 45.0%
GGTGTAGGACAAGTCATCAA+GGG - chr5_4:3594305-3594324 Msa0830540:intron 45.0%
GTGTAGGACAAGTCATCAAG+GGG - chr5_4:3594306-3594325 Msa0830540:intron 45.0%
! TTTTCTTCAGGGATGAGGGT+TGG - chr5_4:3594433-3594452 Msa0830540:intron 45.0%
TTTCTTCAGGGATGAGGGTT+GGG - chr5_4:3594434-3594453 Msa0830540:intron 45.0%
CAAAGGCCAATGAATATGCG+AGG + chr5_4:3594780-3594799 None:intergenic 45.0%
CCTGTAAAGTCTAGCGACAA+AGG + chr5_4:3594797-3594816 None:intergenic 45.0%
CCTTTGTCGCTAGACTTTAC+AGG - chr5_4:3594794-3594813 Msa0830540:intron 45.0%
ACTTTACAGGAGCCGAAGTT+TGG - chr5_4:3594807-3594826 Msa0830540:CDS 45.0%
CACTGACGACAATGGGATTC+TGG - chr5_4:3589878-3589897 Msa0830540:three_prime_UTR 50.0%
CTGACGACAATGGGATTCTG+GGG - chr5_4:3589880-3589899 Msa0830540:three_prime_UTR 50.0%
AGGAAAGCTTCACGTCACTC+AGG - chr5_4:3590065-3590084 Msa0830540:three_prime_UTR 50.0%
! TTCTGATTGAAGGTGCGGTG+CGG + chr5_4:3590289-3590308 None:intergenic 50.0%
! GCACCGACACTTCTGATTGA+AGG + chr5_4:3590299-3590318 None:intergenic 50.0%
! CACTTGAGGTGTCTGGAGTT+TGG - chr5_4:3591030-3591049 Msa0830540:CDS 50.0%
TTTCAGGCTACTCTAGGCGT+TGG - chr5_4:3591139-3591158 Msa0830540:intron 50.0%
AGCATTCTTCAGTGCGCTTC+TGG - chr5_4:3591178-3591197 Msa0830540:intron 50.0%
GTGTTCCTTGCTGCCAAACA+AGG - chr5_4:3591222-3591241 Msa0830540:intron 50.0%
! CTCAACCTTGTTTGGCAGCA+AGG + chr5_4:3591230-3591249 None:intergenic 50.0%
! GTTTGGTGAGGATGACTTGG+TGG - chr5_4:3591270-3591289 Msa0830540:CDS 50.0%
!! GGATGACTTGGTGGCATTCT+CGG - chr5_4:3591279-3591298 Msa0830540:CDS 50.0%
! TCCCGAAGCATCCATCTTTC+TGG - chr5_4:3591310-3591329 Msa0830540:CDS 50.0%
TGATTCATTGGGAGAGGACG+TGG - chr5_4:3591522-3591541 Msa0830540:intron 50.0%
GATTCATTGGGAGAGGACGT+GGG - chr5_4:3591523-3591542 Msa0830540:intron 50.0%
TGTACACATCTTCGCCAGTC+CGG - chr5_4:3591626-3591645 Msa0830540:intron 50.0%
GATCTGGGTGTGTTACATGC+CGG - chr5_4:3591801-3591820 Msa0830540:intron 50.0%
GTCCTGGGTATAACATTCCC+TGG - chr5_4:3591924-3591943 Msa0830540:intron 50.0%
! GGAAGCTGAGAACTTTTGCC+GGG + chr5_4:3592548-3592567 None:intergenic 50.0%
AGGATGAGCAGCTGCAAGAT+GGG - chr5_4:3592783-3592802 Msa0830540:intron 50.0%
GCCAGATGAAAAGTCTGAGG+AGG - chr5_4:3593561-3593580 Msa0830540:CDS 50.0%
AGCTTCTCCTTCAGCCTCTT+TGG + chr5_4:3593810-3593829 None:intergenic 50.0%
GGTTCTCACGTTAGATGGCT+TGG + chr5_4:3593915-3593934 None:intergenic 50.0%
TAGGACAAGTCATCAAGGGG+TGG - chr5_4:3594309-3594328 Msa0830540:intron 50.0%
AGGACAAGTCATCAAGGGGT+GGG - chr5_4:3594310-3594329 Msa0830540:intron 50.0%
TTCTTCAGGGATGAGGGTTG+GGG - chr5_4:3594435-3594454 Msa0830540:intron 50.0%
!! GTTGAGTTGGTTGGCGTTGA+AGG - chr5_4:3594689-3594708 Msa0830540:intron 50.0%
AGACCAAAACGAAGCCGAAG+CGG + chr5_4:3594735-3594754 None:intergenic 50.0%
TACAGGAGCCGAAGTTTGGT+AGG - chr5_4:3594811-3594830 Msa0830540:CDS 50.0%
CTATACGGAACCGGATTGCC+AGG + chr5_4:3590030-3590049 None:intergenic 55.0%
AAGCCCATCCAAATGGGCCT+TGG - chr5_4:3590863-3590882 Msa0830540:intron 55.0%
! GCATTGGCACTTGAGGTGTC+TGG - chr5_4:3591023-3591042 Msa0830540:CDS 55.0%
!! TCTAGGCGTTGGTCCATCGA+CGG - chr5_4:3591150-3591169 Msa0830540:intron 55.0%
GGGCACGTCTCAACCTTGTT+TGG + chr5_4:3591238-3591257 None:intergenic 55.0%
! TTGGTGGCATTCTCGGTCGT+CGG - chr5_4:3591286-3591305 Msa0830540:CDS 55.0%
TCTCTCGTGTCGTCGTCATC+TGG + chr5_4:3591346-3591365 None:intergenic 55.0%
ATACCTCCACTACTCCGGAC+TGG + chr5_4:3591643-3591662 None:intergenic 55.0%
GAGGATGAGCAGCTGCAAGA+TGG - chr5_4:3592782-3592801 Msa0830540:intron 55.0%
GTCATCAAGGGGTGGGATGT+TGG - chr5_4:3594317-3594336 Msa0830540:intron 55.0%
!! TTGCCGCTTCGGCTTCGTTT+TGG - chr5_4:3594729-3594748 Msa0830540:intron 55.0%
TTGGGAGAGGACGTGGGAAC+TGG - chr5_4:3591529-3591548 Msa0830540:intron 60.0%
TGGGAGAGGACGTGGGAACT+GGG - chr5_4:3591530-3591549 Msa0830540:intron 60.0%
TCTTCGCCAGTCCGGAGTAG+TGG - chr5_4:3591634-3591653 Msa0830540:intron 60.0%
GGGTGGGATGTTGGCGTCAA+TGG - chr5_4:3594326-3594345 Msa0830540:intron 60.0%
GGACGTGGGAACTGGGTCAG+AGG - chr5_4:3591537-3591556 Msa0830540:intron 65.0%
TCGCCAGTCCGGAGTAGTGG+AGG - chr5_4:3591637-3591656 Msa0830540:intron 65.0%
! GCGGTGCGGCCTTGTGCAGA+AGG + chr5_4:3590275-3590294 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 3589754 3595131 3589754 ID=Msa0830540;Name=Msa0830540
chr5_4 mRNA 3589754 3595131 3589754 ID=Msa0830540-mRNA-1;Parent=Msa0830540;Name=Msa0830540-mRNA-1;_AED=0.06;_eAED=0.06;_QI=135|1|1|1|1|1|11|413|501
chr5_4 exon 3589754 3590251 3589754 ID=Msa0830540-mRNA-1:exon:1440;Parent=Msa0830540-mRNA-1
chr5_4 exon 3590394 3590442 3590394 ID=Msa0830540-mRNA-1:exon:1439;Parent=Msa0830540-mRNA-1
chr5_4 exon 3590538 3590579 3590538 ID=Msa0830540-mRNA-1:exon:1438;Parent=Msa0830540-mRNA-1
chr5_4 exon 3590666 3590753 3590666 ID=Msa0830540-mRNA-1:exon:1437;Parent=Msa0830540-mRNA-1
chr5_4 exon 3590876 3591122 3590876 ID=Msa0830540-mRNA-1:exon:1436;Parent=Msa0830540-mRNA-1
chr5_4 exon 3591229 3591405 3591229 ID=Msa0830540-mRNA-1:exon:1435;Parent=Msa0830540-mRNA-1
chr5_4 exon 3592081 3592441 3592081 ID=Msa0830540-mRNA-1:exon:1434;Parent=Msa0830540-mRNA-1
chr5_4 exon 3593227 3593363 3593227 ID=Msa0830540-mRNA-1:exon:1433;Parent=Msa0830540-mRNA-1
chr5_4 exon 3593508 3593740 3593508 ID=Msa0830540-mRNA-1:exon:1432;Parent=Msa0830540-mRNA-1
chr5_4 exon 3594799 3594872 3594799 ID=Msa0830540-mRNA-1:exon:1431;Parent=Msa0830540-mRNA-1
chr5_4 exon 3594984 3595131 3594984 ID=Msa0830540-mRNA-1:exon:1430;Parent=Msa0830540-mRNA-1
chr5_4 five_prime_UTR 3594997 3595131 3594997 ID=Msa0830540-mRNA-1:five_prime_utr;Parent=Msa0830540-mRNA-1
chr5_4 CDS 3594984 3594996 3594984 ID=Msa0830540-mRNA-1:cds;Parent=Msa0830540-mRNA-1
chr5_4 CDS 3594799 3594872 3594799 ID=Msa0830540-mRNA-1:cds;Parent=Msa0830540-mRNA-1
chr5_4 CDS 3593508 3593740 3593508 ID=Msa0830540-mRNA-1:cds;Parent=Msa0830540-mRNA-1
chr5_4 CDS 3593227 3593363 3593227 ID=Msa0830540-mRNA-1:cds;Parent=Msa0830540-mRNA-1
chr5_4 CDS 3592081 3592441 3592081 ID=Msa0830540-mRNA-1:cds;Parent=Msa0830540-mRNA-1
chr5_4 CDS 3591229 3591405 3591229 ID=Msa0830540-mRNA-1:cds;Parent=Msa0830540-mRNA-1
chr5_4 CDS 3590876 3591122 3590876 ID=Msa0830540-mRNA-1:cds;Parent=Msa0830540-mRNA-1
chr5_4 CDS 3590666 3590753 3590666 ID=Msa0830540-mRNA-1:cds;Parent=Msa0830540-mRNA-1
chr5_4 CDS 3590538 3590579 3590538 ID=Msa0830540-mRNA-1:cds;Parent=Msa0830540-mRNA-1
chr5_4 CDS 3590394 3590442 3590394 ID=Msa0830540-mRNA-1:cds;Parent=Msa0830540-mRNA-1
chr5_4 CDS 3590167 3590251 3590167 ID=Msa0830540-mRNA-1:cds;Parent=Msa0830540-mRNA-1
chr5_4 three_prime_UTR 3589754 3590166 3589754 ID=Msa0830540-mRNA-1:three_prime_utr;Parent=Msa0830540-mRNA-1
Gene Sequence

>Msa0830540

ATGGGATTCTGGGGGATTGAAGTGAAACCTGGCAATCCGGTTCCGTATAGTACTGACGATGTGGAAGGAAAGCTTCACGTCACTCAGGCTACTCTAGGCGTTGGTCCATCGACGGAGAAAAGCATTCTTCAGTGCGCTTCTGGACGCAAAAATCCAGTTTTTTTGTGTTCCTTGCTGCCAAACAAGGTTGAGACGTGCCCTTTGAATCTTAAGTTTGGTGAGGATGACTTGGTGGCATTCTCGGTCGTCGGTTCCCGAAGCATCCATCTTTCTGGTTATTTTGTGCCAGATGACGACGACACGAGAGATGACTATGAATATGATTCATTGGGAGAGGACGTGGGAACTGGGTCAGAGGAGTCATCTGAATTTGATAGTGAAAATGGATATGATGATCACTTTTTTGACGATAGCGATATGGAAATGTACACATCTTCGCCAGTCCGGAGTAGTGGAGTCGTGATCGAGGAAATACCCGACGACAATCAGCCTGAAAATGGAGATAATCCAGCAAAGCAATCGAAGAAAAAGGAACAAACAGCTCACTTGAAAGAGAAACCCGGCAAAAGTTCTCAGCTTCCAGTTGTCATTAGAGGTGACAATAAGTTTGTCTTGGAAAGTGAAGATGAAGATGGTTTCCCGATTTCCACTTCAGACAAAGCTAAATCTGAGTCTCAGAAGGCTGAAACAGAAACAAAAGGAGAACAAGCTCAAAAAAAAACTGGGAAATCCAAGAAGAAGGCAAAAGATGTTGATGAGTCTGCTAGCTTAAAACGAAAAGTTCAAGCTGTCGATGAGGATGAGCAGCTGCAAGATGGGAAAAAGAAGAAGAAGAAAAACAAGTTGAAAGATCATGGTAAGGAGGAAAGTGCTCATGTAAAGGAGACTAATGTTACTGTGCCAGATGAAAAGTCTGAGGAGGTTAAAACTACAACCAACCAGAACAATGTCTCTCATGCAAAGGATGGAGATGATGGGAAACTATCCAATGATGAAGTCCTCGTTGAGAAGAAAAACAAGAAGAAAAAGAAGAAAAAGACCAAAGAGGCTGAAGGAGAAGCTGCTAAGAATGAAATTGCTACAACTGTTGAAAATCAGAAGTTGTCTACATCTGAGAAGAAAAAAGAGAAAGAACCAACTGAAGCCAAGCCATCTAACGTGAGAACCTATCCAAATGGATTGGTTATAGAGGACATATCTATGGGCAAACCAGATGGCAAAAGAGCTGATCTTGGAAAGAAGGTCAGTGTTAGATATACCGGCAAGCTACAAAAAGATGGGAAAATATTTGACTCGTGTATTGGAAAAGCACCCTTTAAGTTTCGACTTGGTGTAGGACAAGTCATCAAGGGGTGGGATGTTGGCGTCAATGGGATGAGGGTTGGGGACAAAAGAAGACTTACAATTCCACCATCTATGGGATATGGTGACAAACGTGTTGGGAGTATACCACAAAATTCATGGCTTATATTTGATGTTGAGTTGGTTGGCGTTGAAGGCCGCTGA

Protein sequence

>Msa0830540

MGFWGIEVKPGNPVPYSTDDVEGKLHVTQATLGVGPSTEKSILQCASGRKNPVFLCSLLPNKVETCPLNLKFGEDDLVAFSVVGSRSIHLSGYFVPDDDDTRDDYEYDSLGEDVGTGSEESSEFDSENGYDDHFFDDSDMEMYTSSPVRSSGVVIEEIPDDNQPENGDNPAKQSKKKEQTAHLKEKPGKSSQLPVVIRGDNKFVLESEDEDGFPISTSDKAKSESQKAETETKGEQAQKKTGKSKKKAKDVDESASLKRKVQAVDEDEQLQDGKKKKKKNKLKDHGKEESAHVKETNVTVPDEKSEEVKTTTNQNNVSHAKDGDDGKLSNDEVLVEKKNKKKKKKKTKEAEGEAAKNEIATTVENQKLSTSEKKKEKEPTEAKPSNVRTYPNGLVIEDISMGKPDGKRADLGKKVSVRYTGKLQKDGKIFDSCIGKAPFKFRLGVGQVIKGWDVGVNGMRVGDKRRLTIPPSMGYGDKRVGSIPQNSWLIFDVELVGVEGR*