AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0146770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146770 MtrunA17_Chr1g0156231 86.388 551 15 3 1 540 1 502 0.0 952
Msa0146770 MtrunA17_Chr1g0159451 44.937 158 77 2 142 290 251 407 3.77e-29 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146770 AT5G67240.2 48.478 427 195 7 1 405 1 424 1.78e-133 397
Msa0146770 AT5G67240.3 48.478 427 195 7 1 405 1 424 2.61e-132 399
Msa0146770 AT5G67240.3 32.500 160 102 3 306 461 465 622 2.02e-16 82.8
Msa0146770 AT5G67240.4 48.712 427 194 7 1 405 1 424 3.93e-132 399
Msa0146770 AT5G67240.4 45.000 100 54 1 306 405 465 563 5.79e-19 90.9
Msa0146770 AT5G67240.1 48.712 427 194 7 1 405 1 424 8.13e-131 400
Msa0146770 AT5G67240.1 45.000 100 54 1 306 405 465 563 6.76e-19 90.9
Msa0146770 AT5G67240.1 32.500 160 102 3 306 461 604 761 3.58e-16 82.4
Msa0146770 AT3G50100.1 45.606 421 201 8 1 405 1 409 2.06e-115 348
Msa0146770 AT5G05540.1 43.026 423 218 8 1 405 1 418 3.00e-96 300
Msa0146770 AT3G50100.2 45.541 314 150 5 102 401 2 308 4.44e-85 266
Msa0146770 AT5G05540.2 44.160 351 174 7 1 334 1 346 5.83e-82 259
Msa0146770 AT3G50090.1 40.979 327 155 7 82 390 12 318 1.53e-66 219
Msa0146770 AT5G25800.1 40.854 164 87 2 142 296 215 377 2.02e-24 107
Msa0146770 AT5G25800.2 40.854 164 87 2 142 296 217 379 2.45e-24 107

Find 139 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCTCCTTGACCGTTTC+TGG 0.065636 1_4:+6534867 None:intergenic
GAACTTTGAACTTAAAATTT+TGG 0.163264 1_4:-6533739 Msa0146770:three_prime_UTR
TAACATACAAATACATTATC+TGG 0.167873 1_4:+6533676 None:intergenic
GTTGAGGATTTCTCCAAATT+AGG 0.182713 1_4:+6540567 None:intergenic
AAACCTCTAAAACCCTAATT+TGG 0.189575 1_4:-6540580 Msa0146770:five_prime_UTR
CAGTTTATTTGTTCGGAAAA+TGG 0.222363 1_4:-6534332 Msa0146770:CDS
TAATGTATTTGTATGTTATT+AGG 0.230798 1_4:-6533671 Msa0146770:three_prime_UTR
GGCTCTTGAACCAATGTTAA+TGG 0.248346 1_4:+6535299 None:intergenic
GAAAGGCATGAAGGGTAAAA+TGG 0.250069 1_4:-6538761 Msa0146770:CDS
CAAAGTTCGAATTGATAAAA+AGG 0.262892 1_4:+6533754 None:intergenic
GGGCTATGAAGTTCGGAAAA+AGG 0.268806 1_4:-6535408 Msa0146770:intron
GTTGGTTGATATTGTAAAAT+TGG 0.270086 1_4:-6538791 Msa0146770:CDS
AAAGAGGTCCCATGAGGTTT+TGG 0.280323 1_4:-6538674 Msa0146770:CDS
AGTGATAAACCTTAAGAAAA+AGG 0.280502 1_4:-6536497 Msa0146770:CDS
AATTACTGCTCTGCATAAAA+TGG 0.290293 1_4:-6533951 Msa0146770:CDS
TAAACTGTGTCCAACTAATA+TGG 0.306541 1_4:+6535986 None:intergenic
ATTCTTACGTCAATTCGATA+TGG 0.317448 1_4:-6539902 Msa0146770:exon
TGAACCAATGTTAATGGAAA+TGG 0.321470 1_4:+6535305 None:intergenic
TGCAGTATTATATTATTGTT+TGG 0.336413 1_4:-6533639 Msa0146770:three_prime_UTR
CTCAAACAAATCCAACAAAA+TGG 0.342268 1_4:+6533587 None:intergenic
TTGAGGATTTCTCCAAATTA+GGG 0.346280 1_4:+6540568 None:intergenic
ATTGTATATGTACCTTTGTT+TGG 0.351180 1_4:+6534776 None:intergenic
CTTCACTTTCTTTCAATCGT+TGG 0.364206 1_4:+6534020 None:intergenic
TGTGGTAGATCTTATCCCTT+TGG 0.364944 1_4:+6536474 None:intergenic
GAGAGAACAGTTGAGGAAAA+AGG 0.366768 1_4:-6534128 Msa0146770:CDS
GTACCTTTGTTTGGCTGCCT+TGG 0.368463 1_4:+6534785 None:intergenic
GTAGGCATGGCACTGGAATA+TGG 0.376241 1_4:-6533891 Msa0146770:three_prime_UTR
AGTTTATTTGTTCGGAAAAT+GGG 0.384251 1_4:-6534331 Msa0146770:CDS
GCACTACACGAAATTGTTCC+TGG 0.385982 1_4:-6535109 Msa0146770:CDS
TTATTTGATCATTGAATTCA+AGG 0.391255 1_4:-6533861 Msa0146770:three_prime_UTR
TAACAAACCTTATCAATAGA+TGG 0.392009 1_4:+6537628 None:intergenic
TTCGTTGCCATCTATTGATA+AGG 0.396493 1_4:-6537635 Msa0146770:intron
ATTACACAAACTTGTTAAAC+CGG 0.400307 1_4:-6536209 Msa0146770:CDS
TACTTTGTGTAGGACTCAAA+TGG 0.401193 1_4:-6534403 Msa0146770:intron
ACCTCATGGGACCTCTTTGA+TGG 0.405801 1_4:+6538679 None:intergenic
TCCAATGGAACCATATTAGT+TGG 0.408073 1_4:-6535996 Msa0146770:CDS
TCTGGTAAATCTCTCTTAGA+TGG 0.409357 1_4:+6534283 None:intergenic
TTATGAAAACATACCTGCTC+AGG 0.413500 1_4:+6538414 None:intergenic
TGTTGTAGATCACAATTTAG+AGG 0.418558 1_4:-6536386 Msa0146770:intron
TTGACGGCGGCGCCGGTGAA+TGG 0.429902 1_4:+6540529 None:intergenic
GACTACAAAACAGAGATTAC+TGG 0.429986 1_4:-6536172 Msa0146770:CDS
ATTCATCATTCCACTTGCTC+AGG 0.433202 1_4:+6533715 None:intergenic
GGCAATGTCTTAAAACCGTT+TGG 0.441644 1_4:-6533816 Msa0146770:three_prime_UTR
TGAGTGTCAGTTTATTTGTT+CGG 0.442329 1_4:-6534339 Msa0146770:CDS
TAGGGTGCTGGAGAGTTACT+TGG 0.466593 1_4:+6537674 None:intergenic
TTGCTTCAGCCTTCCAGAAA+CGG 0.466691 1_4:-6534880 Msa0146770:intron
TGCATACATCTTCCAACCCT+TGG 0.468589 1_4:-6535784 Msa0146770:CDS
AAAGGCATGAAGGGTAAAAT+GGG 0.471068 1_4:-6538760 Msa0146770:CDS
TCCAACTAATATGGTTCCAT+TGG 0.471919 1_4:+6535995 None:intergenic
AATGGATCCTGAAGTTGAAA+AGG 0.473741 1_4:-6534221 Msa0146770:CDS
GGTTGCTGTTGATTGTGAAA+TGG 0.476220 1_4:-6536449 Msa0146770:CDS
TGAAGATGGGACTGAAGCTT+TGG 0.477204 1_4:-6536419 Msa0146770:CDS
AGTTATAAGTTTCATCCAAA+CGG 0.479288 1_4:+6533801 None:intergenic
TAGTCTTTGATTGCTTTCTC+CGG 0.480451 1_4:+6536190 None:intergenic
CTCAACGGATGAGGATTTGA+AGG 0.485414 1_4:-6538632 Msa0146770:intron
GAATAATCCATTGGATACAT+AGG 0.485454 1_4:+6537655 None:intergenic
ATTCAAGTGTATAATCTTGA+CGG 0.486818 1_4:+6540513 None:intergenic
AGTGGATCATGAAATTGAAA+AGG 0.487238 1_4:-6534074 Msa0146770:CDS
TTGCTCCTTAGCTGATATAC+AGG 0.488234 1_4:-6536119 Msa0146770:intron
GCTTCAGTGTTCACAGTGGT+TGG 0.489845 1_4:+6535130 None:intergenic
GTAAAATTGGTACAAAAGAA+AGG 0.490743 1_4:-6538778 Msa0146770:CDS
CGATCTATTGTGAAGTCCCC+AGG 0.493552 1_4:+6535091 None:intergenic
TGTCACGTGTCGGCTGAGTA+CGG 0.498224 1_4:-6534365 Msa0146770:CDS
ACATCAACCATCTCGCCCTC+TGG 0.503742 1_4:+6534265 None:intergenic
GATTGACACCGCGGAAAAGA+AGG 0.505994 1_4:-6539872 Msa0146770:intron
CACTACACGAAATTGTTCCT+GGG 0.507092 1_4:-6535108 Msa0146770:CDS
ATCTCACGATTCCCCTGAGC+AGG 0.509513 1_4:-6538427 Msa0146770:intron
GGGTAAAATGGGAGACTGGA+AGG 0.511985 1_4:-6538749 Msa0146770:CDS
AGATTTACCAGAGGGCGAGA+TGG 0.514247 1_4:-6534272 Msa0146770:CDS
TGTTTCAATCTCTTTCAAGT+AGG 0.515025 1_4:+6534195 None:intergenic
ACTTTGTGTAGGACTCAAAT+GGG 0.515289 1_4:-6534402 Msa0146770:intron
AAAGACATTCTCAACGGATG+AGG 0.517939 1_4:-6538641 Msa0146770:CDS
GTCACGTGTCGGCTGAGTAC+GGG 0.526262 1_4:-6534364 Msa0146770:CDS
TATAATCTTGACGGCGGCGC+CGG 0.528437 1_4:+6540522 None:intergenic
AACTGAATTGAAAACTCAAA+GGG 0.530639 1_4:-6540662 Msa0146770:five_prime_UTR
AACATACAAATACATTATCT+GGG 0.531489 1_4:+6533677 None:intergenic
ATGAAGAAGTTGTTATCCAA+TGG 0.538388 1_4:-6536011 Msa0146770:CDS
CCTTGGATGGCTCTATTCAC+AGG 0.539512 1_4:-6535767 Msa0146770:CDS
TGATTCCAAGGAAGGAAAAG+TGG 0.539897 1_4:-6534092 Msa0146770:CDS
GAAATGGTTCTCTGTGAAGA+TGG 0.540693 1_4:-6536433 Msa0146770:CDS
CCATTGGATACATAGGGTGC+TGG 0.541606 1_4:+6537662 None:intergenic
AAAAGTAGTAGGCATGGCAC+TGG 0.544537 1_4:-6533898 Msa0146770:exon
TTCATCATTCCACTTGCTCA+GGG 0.546335 1_4:+6533716 None:intergenic
GAAATGCAGCCAAAACCTCA+TGG 0.548328 1_4:+6538665 None:intergenic
GGTACAAAAGAAAGGCATGA+AGG 0.548788 1_4:-6538770 Msa0146770:CDS
GTGCTTCAATCTCTTTCAAG+TGG 0.549104 1_4:+6534047 None:intergenic
TAAGCCATTTCCATTAACAT+TGG 0.550774 1_4:-6535309 Msa0146770:CDS
AATAATCCATTGGATACATA+GGG 0.550785 1_4:+6537656 None:intergenic
TCTCCTTGACCGTTTCTGGA+AGG 0.551707 1_4:+6534871 None:intergenic
ACGATTGAAAGAGAGTGAGT+TGG 0.554197 1_4:-6534164 Msa0146770:CDS
CAAGTGGATGATTCCAAGGA+AGG 0.556893 1_4:-6534100 Msa0146770:CDS
CCAGCACCCTATGTATCCAA+TGG 0.559697 1_4:-6537662 Msa0146770:CDS
TGAAGGGTAAAATGGGAGAC+TGG 0.560598 1_4:-6538753 Msa0146770:CDS
TACATCTTCCAACCCTTGGA+TGG 0.561701 1_4:-6535780 Msa0146770:CDS
AAACTGAATTGAAAACTCAA+AGG 0.562500 1_4:-6540663 Msa0146770:five_prime_UTR
TGCTTCAATCTCTTTCAAGT+GGG 0.564069 1_4:+6534048 None:intergenic
GATGGCAACGAATAATCCAT+TGG 0.567685 1_4:+6537646 None:intergenic
CTTACAAGTGGATGATTCCA+AGG 0.573419 1_4:-6534104 Msa0146770:CDS
GAATAGAGCCATCCAAGGGT+TGG 0.573837 1_4:+6535772 None:intergenic
AATCATTGAGAGAACAGTTG+AGG 0.578459 1_4:-6534135 Msa0146770:CDS
TCAAGGTTTCAAAGTACAAG+AGG 0.580792 1_4:-6540717 None:intergenic
ATGCATCATGTGCCTCTCGT+TGG 0.582171 1_4:+6534818 None:intergenic
GTACAAAAGAAAGGCATGAA+GGG 0.582899 1_4:-6538769 Msa0146770:CDS
AATTACCTGTATATCAGCTA+AGG 0.584653 1_4:+6536114 None:intergenic
TATGAAAACATACCTGCTCA+GGG 0.585900 1_4:+6538415 None:intergenic
AAATGGTTCTCTGTGAAGAT+GGG 0.588526 1_4:-6536432 Msa0146770:CDS
AAATGCAGCCAAAACCTCAT+GGG 0.595175 1_4:+6538666 None:intergenic
TTAGGTTTCAGAAAGTGAGA+TGG 0.598092 1_4:-6535176 Msa0146770:intron
TCTAAGAGAGATTTACCAGA+GGG 0.607288 1_4:-6534280 Msa0146770:CDS
CAGCCTTCCAGAAACGGTCA+AGG 0.607612 1_4:-6534874 Msa0146770:CDS
ATTCCTTCGAAACCATTCAC+CGG 0.609044 1_4:-6540541 Msa0146770:five_prime_UTR
GCGCCGGTGAATGGTTTCGA+AGG 0.610499 1_4:+6540538 None:intergenic
TGTCCAAGGCAGCCAAACAA+AGG 0.611407 1_4:-6534788 Msa0146770:intron
GATGCATATGAAAATGTCCA+AGG 0.619700 1_4:-6534802 Msa0146770:CDS
GGACTTCACAATAGATCGAA+AGG 0.623377 1_4:-6535086 Msa0146770:intron
CCTGTGAATAGAGCCATCCA+AGG 0.624216 1_4:+6535767 None:intergenic
ACGATTGAAAGAAAGTGAAG+CGG 0.626577 1_4:-6534017 Msa0146770:CDS
GTTTCGAAGGAATGTCGTTG+AGG 0.629479 1_4:+6540551 None:intergenic
GTTCTTGCAAAGATCAAACA+TGG 0.630093 1_4:-6535338 Msa0146770:CDS
ATTTCTAAAGACATTCTCAA+CGG 0.633013 1_4:-6538647 Msa0146770:CDS
TGCAGAAACTTGTCACGTGT+CGG 0.633987 1_4:-6534375 Msa0146770:CDS
CTGCTATTCTTATAAAACTG+TGG 0.635169 1_4:-6533837 Msa0146770:three_prime_UTR
AGCGGAGATTGAATCATCGA+GGG 0.645556 1_4:-6533999 Msa0146770:CDS
GAAGCTTGATTATGTTAGAG+TGG 0.657464 1_4:-6535814 Msa0146770:CDS
CTGTGAATAGAGCCATCCAA+GGG 0.666796 1_4:+6535768 None:intergenic
ACAATCAACAGCAACCATTG+TGG 0.670727 1_4:+6536456 None:intergenic
ACTACACGAAATTGTTCCTG+GGG 0.691492 1_4:-6535107 Msa0146770:CDS
ATAAAATAAAATGAAAGACG+TGG 0.692064 1_4:+6540690 None:intergenic
AAGCGGAGATTGAATCATCG+AGG 0.696061 1_4:-6534000 Msa0146770:CDS
TGACACAAACTATTCAACGA+AGG 0.706014 1_4:+6535741 None:intergenic
AGGGATAAGATCTACCACAA+TGG 0.714725 1_4:-6536470 Msa0146770:CDS
ATCTAAGAGAGATTTACCAG+AGG 0.714858 1_4:-6534281 Msa0146770:CDS
TCCATCAAAGAGGTCCCATG+AGG 0.716207 1_4:-6538680 Msa0146770:CDS
ATGAAAACATACCTGCTCAG+GGG 0.723649 1_4:+6538416 None:intergenic
GGATGAGAAGATTGACACCG+CGG 0.723985 1_4:-6539881 Msa0146770:CDS
GTATGAGCGATCCATCAAAG+AGG 0.733411 1_4:-6538690 Msa0146770:CDS
CAAGTGTATAATCTTGACGG+CGG 0.759053 1_4:+6540516 None:intergenic
TAGTGCTTCAGTGTTCACAG+TGG 0.786374 1_4:+6535126 None:intergenic
AGTTTATATAATGATCTACG+TGG 0.789260 1_4:-6535969 Msa0146770:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTAAATTTTATAA+TGG - chr1_4:6536159-6536178 Msa0146770:CDS 0.0%
!! AAAAAAAAAATCTATAGATA+TGG + chr1_4:6537261-6537280 None:intergenic 10.0%
!! AATAATAAATTGTATATCTT+TGG + chr1_4:6537436-6537455 None:intergenic 10.0%
!! TTATATAGAAATAGAAAATA+TGG + chr1_4:6539627-6539646 None:intergenic 10.0%
!! ATTTCTATATAAATGTTTAA+AGG - chr1_4:6539635-6539654 Msa0146770:intron 10.0%
!! TTTCTATATAAATGTTTAAA+GGG - chr1_4:6539636-6539655 Msa0146770:intron 10.0%
!!! GTCTTTCATTTTATTTTATA+AGG - chr1_4:6533582-6533601 Msa0146770:three_prime_UTR 15.0%
!!! TTCAATTTTTACGAAAAATT+AGG - chr1_4:6533933-6533952 Msa0146770:CDS 15.0%
!!! ATAATTACGTTAAATTGTTT+TGG - chr1_4:6534067-6534086 Msa0146770:CDS 15.0%
!! TTCTATCAATTTATAACTAA+GGG + chr1_4:6534250-6534269 None:intergenic 15.0%
!! AACAGTAATGATAAAAAATA+TGG - chr1_4:6535550-6535569 Msa0146770:intron 15.0%
!! ACAGTAATGATAAAAAATAT+GGG - chr1_4:6535551-6535570 Msa0146770:intron 15.0%
!! TAGAAATACTTATCAATTAT+TGG + chr1_4:6535998-6536017 None:intergenic 15.0%
!!! ATTTTAAAGATAATGCATAA+AGG + chr1_4:6536216-6536235 None:intergenic 15.0%
!! AAATTATAACAATGAAACTA+GGG + chr1_4:6536239-6536258 None:intergenic 15.0%
!! AAAATTATAACAATGAAACT+AGG + chr1_4:6536240-6536259 None:intergenic 15.0%
!!! ATTTTCTTTAATAAAGCTTA+TGG - chr1_4:6536945-6536964 Msa0146770:intron 15.0%
!! AAATTCCTGAAAAAAAATAA+GGG + chr1_4:6537212-6537231 None:intergenic 15.0%
!! AAAATTCCTGAAAAAAAATA+AGG + chr1_4:6537213-6537232 None:intergenic 15.0%
!! TGCAATTAACAATAAATATT+AGG - chr1_4:6537379-6537398 Msa0146770:intron 15.0%
!! AACAATAAATATTAGGAAAA+TGG - chr1_4:6537386-6537405 Msa0146770:intron 15.0%
!! ACAATAAATATTAGGAAAAT+GGG - chr1_4:6537387-6537406 Msa0146770:intron 15.0%
!! TTAGTTAATTTATTTAGTGA+TGG - chr1_4:6537649-6537668 Msa0146770:CDS 15.0%
!! TAATGTATTTGTATGTTATT+AGG - chr1_4:6540597-6540616 Msa0146770:five_prime_UTR 15.0%
!! ATAAAATAAAATGAAAGACG+TGG + chr1_4:6533581-6533600 None:intergenic 20.0%
!! ATAAAAACAGAGAAACAAAT+AGG - chr1_4:6533644-6533663 Msa0146770:three_prime_UTR 20.0%
!!! ATTATACACTTGAATTTTTG+AGG - chr1_4:6533763-6533782 Msa0146770:three_prime_UTR 20.0%
!!! TGAATTTGATTATGATTTTC+TGG - chr1_4:6533891-6533910 Msa0146770:three_prime_UTR 20.0%
!!! TTATGATTTTCTGGAAATAT+AGG - chr1_4:6533900-6533919 Msa0146770:exon 20.0%
!! CTTCTATCAATTTATAACTA+AGG + chr1_4:6534251-6534270 None:intergenic 20.0%
!! ATCTAATCAAGCAATAAAAT+GGG + chr1_4:6534493-6534512 None:intergenic 20.0%
!! AATCTAATCAAGCAATAAAA+TGG + chr1_4:6534494-6534513 None:intergenic 20.0%
!!! ATTTCAAGATTTTCTACTAT+GGG + chr1_4:6534584-6534603 None:intergenic 20.0%
!! CATTTCAAAAACAAAACAAA+AGG + chr1_4:6534691-6534710 None:intergenic 20.0%
!!! TGCATTCATTTGAATATTTT+AGG - chr1_4:6534860-6534879 Msa0146770:CDS 20.0%
!! GGAGAAAATATATTGAATTA+TGG - chr1_4:6535002-6535021 Msa0146770:intron 20.0%
!!! ATTTTGGATAATCATATATC+AGG - chr1_4:6535248-6535267 Msa0146770:intron 20.0%
!!! TTTTGGATAATCATATATCA+GGG - chr1_4:6535249-6535268 Msa0146770:intron 20.0%
!! GGTATAATAAATGTCAATAA+AGG - chr1_4:6535282-6535301 Msa0146770:intron 20.0%
!!! ACATTAAAGTATTAGTTTCT+GGG + chr1_4:6535449-6535468 None:intergenic 20.0%
!!! ATTTTTTATCATTACTGTTC+AGG + chr1_4:6535549-6535568 None:intergenic 20.0%
!!! TTTAACTTTATATTTAGGGA+AGG + chr1_4:6535676-6535695 None:intergenic 20.0%
!!! GGCTTTTAACTTTATATTTA+GGG + chr1_4:6535680-6535699 None:intergenic 20.0%
!!! ATTAACTTTATCTTTAGGAA+AGG + chr1_4:6535717-6535736 None:intergenic 20.0%
!! TTTCATAATGATTGTTATGT+TGG - chr1_4:6535869-6535888 Msa0146770:intron 20.0%
!! AAATAGTCATAAATATGTCA+AGG - chr1_4:6536773-6536792 Msa0146770:intron 20.0%
!!! AAAAGACCATGTTTTTTTTA+AGG + chr1_4:6536867-6536886 None:intergenic 20.0%
!!! TTTTTTTTTGAAGGATAACA+TGG - chr1_4:6536885-6536904 Msa0146770:intron 20.0%
!! TAAAAAAGCTCAAAAAAACA+TGG - chr1_4:6536918-6536937 Msa0146770:intron 20.0%
!!! ATTGAAATTACTTTTTCGTA+CGG - chr1_4:6537028-6537047 Msa0146770:intron 20.0%
!! CATATCTATCAATATTTAAG+AGG + chr1_4:6537476-6537495 None:intergenic 20.0%
!! CTCTTAAATATTGATAGATA+TGG - chr1_4:6537474-6537493 Msa0146770:intron 20.0%
!! AAATATTGATAGATATGGAA+TGG - chr1_4:6537479-6537498 Msa0146770:intron 20.0%
!! TAATATTGATAGATATTGCA+TGG - chr1_4:6537516-6537535 Msa0146770:intron 20.0%
!! AATATTGATAGATATTGCAT+GGG - chr1_4:6537517-6537536 Msa0146770:intron 20.0%
!! AAAGCAAATCATATAGTAAA+AGG + chr1_4:6537631-6537650 None:intergenic 20.0%
!! TGTAAATTATTAGTCATACA+AGG - chr1_4:6537701-6537720 Msa0146770:intron 20.0%
!!! TTATCAATTATTTTTTGCTG+TGG - chr1_4:6537731-6537750 Msa0146770:intron 20.0%
!! CTAATAATTCATAAAGTAGA+TGG + chr1_4:6538608-6538627 None:intergenic 20.0%
!! TCATGTTATTCCAATAATTA+CGG + chr1_4:6539263-6539282 None:intergenic 20.0%
!! TCAATTTATGATAAGAAACT+TGG + chr1_4:6539760-6539779 None:intergenic 20.0%
!! TTATTTGATCATTGAATTCA+AGG - chr1_4:6540407-6540426 Msa0146770:intron 20.0%
!!! GAACTTTGAACTTAAAATTT+TGG - chr1_4:6540529-6540548 Msa0146770:five_prime_UTR 20.0%
!! AACATACAAATACATTATCT+GGG + chr1_4:6540594-6540613 None:intergenic 20.0%
!! TAACATACAAATACATTATC+TGG + chr1_4:6540595-6540614 None:intergenic 20.0%
!! TGCAGTATTATATTATTGTT+TGG - chr1_4:6540629-6540648 Msa0146770:five_prime_UTR 20.0%
!!! GTTTGAGAATTTTTAGTTTA+TGG - chr1_4:6540697-6540716 Msa0146770:five_prime_UTR 20.0%
!!! GAATTTTTAGTTTATGGTTA+TGG - chr1_4:6540703-6540722 Msa0146770:five_prime_UTR 20.0%
! AAACTGAATTGAAAACTCAA+AGG - chr1_4:6533605-6533624 Msa0146770:three_prime_UTR 25.0%
! AACTGAATTGAAAACTCAAA+GGG - chr1_4:6533606-6533625 Msa0146770:three_prime_UTR 25.0%
!!! TTGTTTCTCTGTTTTTATAC+TGG + chr1_4:6533642-6533661 None:intergenic 25.0%
!! TTTAGAGGTTTTCAAAAACA+AGG + chr1_4:6533679-6533698 None:intergenic 25.0%
! ATTCAAGTGTATAATCTTGA+CGG + chr1_4:6533758-6533777 None:intergenic 25.0%
! AAAATACAAGCACAAAGAAA+TGG + chr1_4:6533856-6533875 None:intergenic 25.0%
! TACGAAAAATTAGGTTAACT+TGG - chr1_4:6533942-6533961 Msa0146770:CDS 25.0%
! ACGAAAAATTAGGTTAACTT+GGG - chr1_4:6533943-6533962 Msa0146770:CDS 25.0%
!! ATAAGCGATTTTTATAGCAA+AGG - chr1_4:6534042-6534061 Msa0146770:CDS 25.0%
! ATTGCTTTACTTGTATAATC+AGG - chr1_4:6534328-6534347 Msa0146770:CDS 25.0%
!!! TTGTATAATCAGGTTTTGTT+GGG - chr1_4:6534338-6534357 Msa0146770:CDS 25.0%
! ATTTGCTTCTTTGTTCTATT+CGG - chr1_4:6534455-6534474 Msa0146770:intron 25.0%
! TTATTGCTTGATTAGATTGT+TGG - chr1_4:6534496-6534515 Msa0146770:intron 25.0%
! TATTGCTTGATTAGATTGTT+GGG - chr1_4:6534497-6534516 Msa0146770:intron 25.0%
!!! TGTCACTTTTATTCTCATAT+TGG + chr1_4:6534533-6534552 None:intergenic 25.0%
!! CATTTCAAGATTTTCTACTA+TGG + chr1_4:6534585-6534604 None:intergenic 25.0%
!! TTTGAACTTTTGACATTGTA+AGG - chr1_4:6534728-6534747 Msa0146770:intron 25.0%
!! TTGAACTTTTGACATTGTAA+GGG - chr1_4:6534729-6534748 Msa0146770:intron 25.0%
! TGATAGATAAACAACTGAAA+CGG - chr1_4:6534762-6534781 Msa0146770:intron 25.0%
!! ATTTAAAACCTTGAAAACAG+TGG - chr1_4:6535156-6535175 Msa0146770:CDS 25.0%
!! TCAAGATTCAAAGTGTATTT+TGG - chr1_4:6535232-6535251 Msa0146770:intron 25.0%
! ATATATCAGGGAAAAAACTA+GGG - chr1_4:6535261-6535280 Msa0146770:intron 25.0%
!! CATTAAAGTATTAGTTTCTG+GGG + chr1_4:6535448-6535467 None:intergenic 25.0%
!! CACATTAAAGTATTAGTTTC+TGG + chr1_4:6535450-6535469 None:intergenic 25.0%
! ACTAATACTTTAATGTGCAT+AGG - chr1_4:6535453-6535472 Msa0146770:intron 25.0%
!! GTTGGTTGATATTGTAAAAT+TGG - chr1_4:6535477-6535496 Msa0146770:intron 25.0%
! GTAAAATTGGTACAAAAGAA+AGG - chr1_4:6535490-6535509 Msa0146770:intron 25.0%
! AATGATAAAAAATATGGGTC+AGG - chr1_4:6535556-6535575 Msa0146770:intron 25.0%
!! ATTTCTAAAGACATTCTCAA+CGG - chr1_4:6535621-6535640 Msa0146770:intron 25.0%
!!! GGGCTTTTAACTTTATATTT+AGG + chr1_4:6535681-6535700 None:intergenic 25.0%
! TTTAGGAAAGGATATAAATC+AGG + chr1_4:6535705-6535724 None:intergenic 25.0%
! CTCGTAAAATATAGAAAAGA+TGG + chr1_4:6535921-6535940 None:intergenic 25.0%
! CTGGTAAAATATAGAAAAGA+TGG + chr1_4:6535967-6535986 None:intergenic 25.0%
! TCAATTATTGGTACTATAAC+TGG + chr1_4:6535986-6536005 None:intergenic 25.0%
!!! GTTTTCTGTGTATTTTTTTG+AGG - chr1_4:6536054-6536073 Msa0146770:intron 25.0%
! TAAAAAATGTTGAACCCTTA+AGG + chr1_4:6536146-6536165 None:intergenic 25.0%
! AACTAATAATGAAAAAGTGG+CGG + chr1_4:6536185-6536204 None:intergenic 25.0%
! TGGAACTAATAATGAAAAAG+TGG + chr1_4:6536188-6536207 None:intergenic 25.0%
!! CTTGTAAGTCAACTTTTATA+TGG + chr1_4:6536283-6536302 None:intergenic 25.0%
! TAGGTTCAACATTCAAATTT+GGG + chr1_4:6536328-6536347 None:intergenic 25.0%
! TTAGGTTCAACATTCAAATT+TGG + chr1_4:6536329-6536348 None:intergenic 25.0%
! CAGAAAGTAATATTAGAAGA+TGG + chr1_4:6536410-6536429 None:intergenic 25.0%
!! TAGGAAGCGTAAAAAATAAT+TGG + chr1_4:6536436-6536455 None:intergenic 25.0%
! AATAATCCATTGGATACATA+GGG + chr1_4:6536615-6536634 None:intergenic 25.0%
! TAACAAACCTTATCAATAGA+TGG + chr1_4:6536643-6536662 None:intergenic 25.0%
!!! GTTATATTCTATTTTTCTCG+AGG + chr1_4:6536809-6536828 None:intergenic 25.0%
! GAAAATAACACAGAAAAAAG+TGG - chr1_4:6536840-6536859 Msa0146770:intron 25.0%
!!! CATGGTCTTTTTTTTTTTGA+AGG - chr1_4:6536876-6536895 Msa0146770:intron 25.0%
!!! TCAAACCCTTATTTTTTTTC+AGG - chr1_4:6537204-6537223 Msa0146770:intron 25.0%
! ATTGCATTATAGATTGCTTA+AGG + chr1_4:6537365-6537384 None:intergenic 25.0%
!! ATCATATAGTAAAAGGTGTA+AGG + chr1_4:6537624-6537643 None:intergenic 25.0%
! AGTGATAAACCTTAAGAAAA+AGG - chr1_4:6537771-6537790 Msa0146770:intron 25.0%
! GAGGTAATGTAATTTAATGA+TGG - chr1_4:6537901-6537920 Msa0146770:intron 25.0%
!! CAAACGAAACAATTTCTTTT+CGG - chr1_4:6538000-6538019 Msa0146770:intron 25.0%
!! AAACGAAACAATTTCTTTTC+GGG - chr1_4:6538001-6538020 Msa0146770:intron 25.0%
!!! ATTACACAAACTTGTTAAAC+CGG - chr1_4:6538059-6538078 Msa0146770:intron 25.0%
! AGTTTATATAATGATCTACG+TGG - chr1_4:6538299-6538318 Msa0146770:intron 25.0%
! TTAGTAAACAAAATGAAACC+AGG + chr1_4:6538414-6538433 None:intergenic 25.0%
! TGAATTATTAGTATGAGTTG+TGG - chr1_4:6538617-6538636 Msa0146770:intron 25.0%
! TATACAATACAATGACTTAC+AGG + chr1_4:6538993-6539012 None:intergenic 25.0%
!!! TTGTATACTTTTTTCAGTAC+CGG - chr1_4:6539006-6539025 Msa0146770:intron 25.0%
! TTGTAGTTATACAGTTAAAC+TGG - chr1_4:6539030-6539049 Msa0146770:intron 25.0%
!!! GGACTTTAAAATTTATCCTT+CGG - chr1_4:6539298-6539317 Msa0146770:intron 25.0%
!! TTGGTTCTTAAAAATAGCTA+AGG + chr1_4:6539434-6539453 None:intergenic 25.0%
! ATTGTATATGTACCTTTGTT+TGG + chr1_4:6539495-6539514 None:intergenic 25.0%
! GAAATAGAAAATATGGATTC+AGG + chr1_4:6539620-6539639 None:intergenic 25.0%
!!! GTTATTTTTCCATCAGATTT+TGG + chr1_4:6539692-6539711 None:intergenic 25.0%
! AGTTTATTTGTTCGGAAAAT+GGG - chr1_4:6539937-6539956 Msa0146770:intron 25.0%
!! ATTTTTACTTTCTTGTTCTC+GGG + chr1_4:6540030-6540049 None:intergenic 25.0%
!! CATTTTTACTTTCTTGTTCT+CGG + chr1_4:6540031-6540050 None:intergenic 25.0%
! AGTTATAAGTTTCATCCAAA+CGG + chr1_4:6540470-6540489 None:intergenic 25.0%
! CAAAGTTCGAATTGATAAAA+AGG + chr1_4:6540517-6540536 None:intergenic 25.0%
!! TGACTAAAAATCCATTTTGT+TGG - chr1_4:6540670-6540689 Msa0146770:five_prime_UTR 25.0%
!! AAACCTCTAAAACCCTAATT+TGG - chr1_4:6533688-6533707 Msa0146770:three_prime_UTR 30.0%
TTGAGGATTTCTCCAAATTA+GGG + chr1_4:6533703-6533722 None:intergenic 30.0%
!! ATAAGCAGAAAGTTTGTTAC+CGG + chr1_4:6533826-6533845 None:intergenic 30.0%
!! TGATTTTCTGGAAATATAGG+TGG - chr1_4:6533903-6533922 Msa0146770:exon 30.0%
! CGAAAAATTAGGTTAACTTG+GGG - chr1_4:6533944-6533963 Msa0146770:CDS 30.0%
AAATAAGCTGTTATCCAAAC+AGG + chr1_4:6533970-6533989 None:intergenic 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG + chr1_4:6534190-6534209 None:intergenic 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG + chr1_4:6534191-6534210 None:intergenic 30.0%
CTTCTAACTCATCACTAAAT+TGG + chr1_4:6534283-6534302 None:intergenic 30.0%
ATTTAGTGATGAGTTAGAAG+CGG - chr1_4:6534283-6534302 Msa0146770:CDS 30.0%
!! CTTGTATAATCAGGTTTTGT+TGG - chr1_4:6534337-6534356 Msa0146770:CDS 30.0%
ATTCTTACGTCAATTCGATA+TGG - chr1_4:6534366-6534385 Msa0146770:CDS 30.0%
AAGAAGCAAATGCAAAACAA+AGG + chr1_4:6534446-6534465 None:intergenic 30.0%
! TGAACTTTTGACATTGTAAG+GGG - chr1_4:6534730-6534749 Msa0146770:intron 30.0%
!! TTGGGTTCAAGTTTTGTAAA+TGG - chr1_4:6534981-6535000 Msa0146770:intron 30.0%
AACAAATGTAGCCACAATTA+CGG + chr1_4:6535078-6535097 None:intergenic 30.0%
CATATATCAGGGAAAAAACT+AGG - chr1_4:6535260-6535279 Msa0146770:intron 30.0%
GAAAAACAAAAGGCTAACAA+AGG + chr1_4:6535405-6535424 None:intergenic 30.0%
!!! TTGTTAGCCTTTTGTTTTTC+CGG - chr1_4:6535405-6535424 Msa0146770:intron 30.0%
CTCAATATTTGAGTCAAAAC+TGG + chr1_4:6536028-6536047 None:intergenic 30.0%
! GATAATGCATAAAGGTACAA+TGG + chr1_4:6536208-6536227 None:intergenic 30.0%
! TAAGTCAACTTTTATATGGC+AGG + chr1_4:6536279-6536298 None:intergenic 30.0%
TACGGTTAGAAAAACATAGT+AGG + chr1_4:6536550-6536569 None:intergenic 30.0%
! GTTTTTCTAACCGTAACTTT+TGG - chr1_4:6536555-6536574 Msa0146770:intron 30.0%
GAATAATCCATTGGATACAT+AGG + chr1_4:6536616-6536635 None:intergenic 30.0%
! TTACCATTTTGAATGCACAT+AGG + chr1_4:6536698-6536717 None:intergenic 30.0%
TCTATAAATTCAACAAGGAC+TGG + chr1_4:6536721-6536740 None:intergenic 30.0%
GTGTGTCTATAAATTCAACA+AGG + chr1_4:6536726-6536745 None:intergenic 30.0%
AGTGGACCTTAAAAAAAACA+TGG - chr1_4:6536858-6536877 Msa0146770:intron 30.0%
TTCAGTGCTTGAAAATGAAA+TGG - chr1_4:6536996-6537015 Msa0146770:intron 30.0%
TATGTGCACTGCAATAAAAA+AGG + chr1_4:6537148-6537167 None:intergenic 30.0%
TAAATTTCATCCACAGACAA+TGG + chr1_4:6537184-6537203 None:intergenic 30.0%
TCTATAGATATGGAATACAG+TGG + chr1_4:6537251-6537270 None:intergenic 30.0%
GGAAAATGGGAAATTAAATG+AGG - chr1_4:6537400-6537419 Msa0146770:intron 30.0%
ATTGATAGATATGGAATGGT+AGG - chr1_4:6537483-6537502 Msa0146770:intron 30.0%
ATTGTCCTTGATTTCTCAAT+TGG - chr1_4:6537570-6537589 Msa0146770:intron 30.0%
TGCTACAGTTTATAAGCATT+CGG - chr1_4:6537674-6537693 Msa0146770:CDS 30.0%
!!! TTTTTTGCTGTGGAAAATGA+AGG - chr1_4:6537741-6537760 Msa0146770:intron 30.0%
!! TTTTTGCTGTGGAAAATGAA+GGG - chr1_4:6537742-6537761 Msa0146770:intron 30.0%
TGTTGTAGATCACAATTTAG+AGG - chr1_4:6537882-6537901 Msa0146770:intron 30.0%
! AACGAAACAATTTCTTTTCG+GGG - chr1_4:6538002-6538021 Msa0146770:intron 30.0%
! AGATGATTTCAGAACTTTTC+AGG - chr1_4:6538032-6538051 Msa0146770:intron 30.0%
AATTACCTGTATATCAGCTA+AGG + chr1_4:6538157-6538176 None:intergenic 30.0%
AGCATTTGAAAGGAAGATAA+AGG + chr1_4:6538202-6538221 None:intergenic 30.0%
TCCTTTCAAATGCTTAATGA+AGG - chr1_4:6538208-6538227 Msa0146770:intron 30.0%
TCCTTCATTAAGCATTTGAA+AGG + chr1_4:6538212-6538231 None:intergenic 30.0%
ATGAAGAAGTTGTTATCCAA+TGG - chr1_4:6538257-6538276 Msa0146770:intron 30.0%
TAAACTGTGTCCAACTAATA+TGG + chr1_4:6538285-6538304 None:intergenic 30.0%
AACCAGGAAAAATAACACAA+CGG + chr1_4:6538398-6538417 None:intergenic 30.0%
AATCATAATATTCGCATTGC+GGG + chr1_4:6538573-6538592 None:intergenic 30.0%
GAATCATAATATTCGCATTG+CGG + chr1_4:6538574-6538593 None:intergenic 30.0%
CTTGTGAGTTTGTATTTGTA+TGG + chr1_4:6538754-6538773 None:intergenic 30.0%
ACAAACTCACAAGCAAATTA+CGG - chr1_4:6538761-6538780 Msa0146770:CDS 30.0%
GAGGTAAGATAAATGAAAGA+TGG - chr1_4:6538783-6538802 Msa0146770:CDS 30.0%
! ATCTTTGTAACAGTCTGTTT+TGG - chr1_4:6538839-6538858 Msa0146770:intron 30.0%
! TCTTTGTAACAGTCTGTTTT+GGG - chr1_4:6538840-6538859 Msa0146770:intron 30.0%
TAAGCCATTTCCATTAACAT+TGG - chr1_4:6538959-6538978 Msa0146770:intron 30.0%
TGAACCAATGTTAATGGAAA+TGG + chr1_4:6538966-6538985 None:intergenic 30.0%
!!! TGTATACTTTTTTCAGTACC+GGG - chr1_4:6539007-6539026 Msa0146770:intron 30.0%
TTAACTGTATAACTACAACC+CGG + chr1_4:6539028-6539047 None:intergenic 30.0%
AGTTATACAGTTAAACTGGT+TGG - chr1_4:6539034-6539053 Msa0146770:intron 30.0%
ACATGAATGTCTTCAATTTG+AGG - chr1_4:6539277-6539296 Msa0146770:intron 30.0%
!! TATTTTTAAGAACCAACGAG+AGG - chr1_4:6539438-6539457 Msa0146770:intron 30.0%
! AAATATGGATTCAGGTATTG+TGG + chr1_4:6539612-6539631 None:intergenic 30.0%
! TTTTTCCATCAGATTTTGGA+AGG + chr1_4:6539688-6539707 None:intergenic 30.0%
CTTATGCCTGTTCAAAAAAA+CGG - chr1_4:6539717-6539736 Msa0146770:intron 30.0%
!!! GTATATCCGTTTTTTTGAAC+AGG + chr1_4:6539726-6539745 None:intergenic 30.0%
! AAGCATAGTTAATCCCTTTT+GGG - chr1_4:6539801-6539820 Msa0146770:intron 30.0%
!! ACACTGGTTTGATCAAAAAA+GGG + chr1_4:6539838-6539857 None:intergenic 30.0%
!! AACACTGGTTTGATCAAAAA+AGG + chr1_4:6539839-6539858 None:intergenic 30.0%
TGAGTGTCAGTTTATTTGTT+CGG - chr1_4:6539929-6539948 Msa0146770:intron 30.0%
CAGTTTATTTGTTCGGAAAA+TGG - chr1_4:6539936-6539955 Msa0146770:intron 30.0%
!!! TCTTAGATGGCATTTTTTTG+TGG + chr1_4:6539975-6539994 None:intergenic 30.0%
CGAGAACAAGAAAGTAAAAA+TGG - chr1_4:6540029-6540048 Msa0146770:intron 30.0%
! TGTTTCAATCTCTTTCAAGT+AGG + chr1_4:6540076-6540095 None:intergenic 30.0%
AGTGGATCATGAAATTGAAA+AGG - chr1_4:6540194-6540213 Msa0146770:intron 30.0%
AATTACTGCTCTGCATAAAA+TGG - chr1_4:6540317-6540336 Msa0146770:intron 30.0%
TGGTAGCTAACATACAAAAA+AGG - chr1_4:6540337-6540356 Msa0146770:intron 30.0%
GCAAAAACCTAAAAAGTAGT+AGG - chr1_4:6540359-6540378 Msa0146770:intron 30.0%
CTGCTATTCTTATAAAACTG+TGG - chr1_4:6540431-6540450 Msa0146770:intron 30.0%
CTCAAACAAATCCAACAAAA+TGG + chr1_4:6540684-6540703 None:intergenic 30.0%
!! TCTCCAAATTAGGGTTTTAG+AGG + chr1_4:6533694-6533713 None:intergenic 35.0%
GTTGAGGATTTCTCCAAATT+AGG + chr1_4:6533704-6533723 None:intergenic 35.0%
TCAAATAAGCCAATCTAGAC+AGG - chr1_4:6534224-6534243 Msa0146770:CDS 35.0%
TTTAGTGATGAGTTAGAAGC+GGG - chr1_4:6534284-6534303 Msa0146770:CDS 35.0%
CAAAACAAAGGAGATACTGT+AGG + chr1_4:6534434-6534453 None:intergenic 35.0%
TATTCAATCTGTGACACTCA+TGG + chr1_4:6534656-6534675 None:intergenic 35.0%
GATAAACAACTGAAACGGAA+AGG - chr1_4:6534767-6534786 Msa0146770:intron 35.0%
! AAAGGACTTTTCTCACTAAC+TGG - chr1_4:6534785-6534804 Msa0146770:intron 35.0%
ATGAATGCAAAACAGTACCA+TGG + chr1_4:6534849-6534868 None:intergenic 35.0%
!!! GTTTTTTTATCAGCGAGTTC+TGG - chr1_4:6534920-6534939 Msa0146770:intron 35.0%
AACCCAATACCTTGTTCAAA+GGG + chr1_4:6534968-6534987 None:intergenic 35.0%
TTAAATTCTGATTGAAGCCG+CGG + chr1_4:6535142-6535161 None:intergenic 35.0%
! CGACTAATCTGATTTGAACT+AGG + chr1_4:6535208-6535227 None:intergenic 35.0%
! TTTTTGATGTATACACCTGC+TGG - chr1_4:6535357-6535376 Msa0146770:CDS 35.0%
TTTCATTCATCTAAACCAGC+AGG + chr1_4:6535375-6535394 None:intergenic 35.0%
AACTAGACCGGAAAAACAAA+AGG + chr1_4:6535415-6535434 None:intergenic 35.0%
!! AGTATTAGTTTCTGGGGTTA+AGG + chr1_4:6535442-6535461 None:intergenic 35.0%
ACTTTAATGTGCATAGGTGT+TGG - chr1_4:6535459-6535478 Msa0146770:intron 35.0%
! GTACAAAAGAAAGGCATGAA+GGG - chr1_4:6535499-6535518 Msa0146770:intron 35.0%
! AAAGGCATGAAGGGTAAAAT+GGG - chr1_4:6535508-6535527 Msa0146770:intron 35.0%
GGAAAGGATATAAATCAGGA+GGG + chr1_4:6535701-6535720 None:intergenic 35.0%
AGGAAAGGATATAAATCAGG+AGG + chr1_4:6535702-6535721 None:intergenic 35.0%
GGGCGATTAACTTTATCTTT+AGG + chr1_4:6535722-6535741 None:intergenic 35.0%
GAAAATGAGTAAGACTGATC+TGG + chr1_4:6535746-6535765 None:intergenic 35.0%
!!! TCTTCTTGTGCTCAGTTTTT+TGG - chr1_4:6535764-6535783 Msa0146770:CDS 35.0%
!!! AGTTTTTTGGCAACATCATG+CGG - chr1_4:6535777-6535796 Msa0146770:CDS 35.0%
TATGAAAACATACCTGCTCA+GGG + chr1_4:6535856-6535875 None:intergenic 35.0%
TTATGAAAACATACCTGCTC+AGG + chr1_4:6535857-6535876 None:intergenic 35.0%
TTCTTACTTCACCATCCTTA+AGG - chr1_4:6536128-6536147 Msa0146770:CDS 35.0%
TCTTACTTCACCATCCTTAA+GGG - chr1_4:6536129-6536148 Msa0146770:CDS 35.0%
AAATGTTGAACCCTTAAGGA+TGG + chr1_4:6536142-6536161 None:intergenic 35.0%
! GTCGTGGTCTATTGAATTTT+AGG + chr1_4:6536347-6536366 None:intergenic 35.0%
TTCGTTGCCATCTATTGATA+AGG - chr1_4:6536633-6536652 Msa0146770:intron 35.0%
! AACTCTGATCTCCTATTTTC+TGG - chr1_4:6536668-6536687 Msa0146770:intron 35.0%
CAAGTCAAGAAGTTCACATT+AGG + chr1_4:6536751-6536770 None:intergenic 35.0%
CATGACCAATTGAGAAATCA+AGG + chr1_4:6537578-6537597 None:intergenic 35.0%
GCTACAGTTTATAAGCATTC+GGG - chr1_4:6537675-6537694 Msa0146770:CDS 35.0%
AACCTTAAGAAAAAGGCCAA+AGG - chr1_4:6537778-6537797 Msa0146770:intron 35.0%
ACCTTAAGAAAAAGGCCAAA+GGG - chr1_4:6537779-6537798 Msa0146770:intron 35.0%
AAATGGTTCTCTGTGAAGAT+GGG - chr1_4:6537836-6537855 Msa0146770:intron 35.0%
! TGATGGTTCTTCCTTTTACT+CGG - chr1_4:6537918-6537937 Msa0146770:intron 35.0%
TAGTCTTTGATTGCTTTCTC+CGG + chr1_4:6538081-6538100 None:intergenic 35.0%
GACTACAAAACAGAGATTAC+TGG - chr1_4:6538096-6538115 Msa0146770:intron 35.0%
TCCAATGGAACCATATTAGT+TGG - chr1_4:6538272-6538291 Msa0146770:intron 35.0%
TCCAACTAATATGGTTCCAT+TGG + chr1_4:6538276-6538295 None:intergenic 35.0%
! AGTGTCGTGAACATTTTGTT+TGG - chr1_4:6538324-6538343 Msa0146770:intron 35.0%
TTTGTTTGGCTGTCTTTGAA+TGG - chr1_4:6538338-6538357 Msa0146770:intron 35.0%
TCTACAACGAAATTAGCAGT+AGG + chr1_4:6538364-6538383 None:intergenic 35.0%
!!! TTCCGTTGTGTTATTTTTCC+TGG - chr1_4:6538393-6538412 Msa0146770:intron 35.0%
GAAGCTTGATTATGTTAGAG+TGG - chr1_4:6538454-6538473 Msa0146770:CDS 35.0%
TGACACAAACTATTCAACGA+AGG + chr1_4:6538530-6538549 None:intergenic 35.0%
! TTCGTTGAATAGTTTGTGTC+AGG - chr1_4:6538529-6538548 Msa0146770:intron 35.0%
TAGTATGAGTTGTGGTCATA+TGG - chr1_4:6538625-6538644 Msa0146770:intron 35.0%
TGGTCATATGGTTATTCCTT+TGG - chr1_4:6538637-6538656 Msa0146770:CDS 35.0%
TCATATGGTTATTCCTTTGG+AGG - chr1_4:6538640-6538659 Msa0146770:CDS 35.0%
GTTCTTGCAAAGATCAAACA+TGG - chr1_4:6538930-6538949 Msa0146770:intron 35.0%
!!! GTTTGCTGTTCTCTCATTTT+AGG - chr1_4:6539074-6539093 Msa0146770:intron 35.0%
TTAGGTTTCAGAAAGTGAGA+TGG - chr1_4:6539092-6539111 Msa0146770:intron 35.0%
AGAGGTTCATCCGTAATTAT+TGG - chr1_4:6539250-6539269 Msa0146770:intron 35.0%
!!! CTGGGCTATTTTTCTTGTTT+GGG - chr1_4:6539346-6539365 Msa0146770:intron 35.0%
GATGCATATGAAAATGTCCA+AGG - chr1_4:6539466-6539485 Msa0146770:intron 35.0%
! ATTCGTTTGTTGATTAGCTG+AGG - chr1_4:6539552-6539571 Msa0146770:intron 35.0%
! TTCGTTTGTTGATTAGCTGA+GGG - chr1_4:6539553-6539572 Msa0146770:intron 35.0%
ATTCTCCTTCCAAAATCTGA+TGG - chr1_4:6539680-6539699 Msa0146770:intron 35.0%
!!! CGTTTTTTTGAACAGGCATA+AGG + chr1_4:6539719-6539738 None:intergenic 35.0%
! GAAGCATAGTTAATCCCTTT+TGG - chr1_4:6539800-6539819 Msa0146770:intron 35.0%
!! ACTGGTTTGATCAAAAAAGG+GGG + chr1_4:6539836-6539855 None:intergenic 35.0%
!! CACTGGTTTGATCAAAAAAG+GGG + chr1_4:6539837-6539856 None:intergenic 35.0%
TGTTGTGCATTACTTTGTGT+AGG - chr1_4:6539855-6539874 Msa0146770:intron 35.0%
TACTTTGTGTAGGACTCAAA+TGG - chr1_4:6539865-6539884 Msa0146770:intron 35.0%
ACTTTGTGTAGGACTCAAAT+GGG - chr1_4:6539866-6539885 Msa0146770:intron 35.0%
TCTGGTAAATCTCTCTTAGA+TGG + chr1_4:6539988-6540007 None:intergenic 35.0%
ATCTAAGAGAGATTTACCAG+AGG - chr1_4:6539987-6540006 Msa0146770:intron 35.0%
TCTAAGAGAGATTTACCAGA+GGG - chr1_4:6539988-6540007 Msa0146770:intron 35.0%
AATGGATCCTGAAGTTGAAA+AGG - chr1_4:6540047-6540066 Msa0146770:intron 35.0%
AATCATTGAGAGAACAGTTG+AGG - chr1_4:6540133-6540152 Msa0146770:intron 35.0%
! TGCTTCAATCTCTTTCAAGT+GGG + chr1_4:6540223-6540242 None:intergenic 35.0%
CTTCACTTTCTTTCAATCGT+TGG + chr1_4:6540251-6540270 None:intergenic 35.0%
ACGATTGAAAGAAAGTGAAG+CGG - chr1_4:6540251-6540270 Msa0146770:intron 35.0%
AACCTAAAAAGTAGTAGGCA+TGG - chr1_4:6540364-6540383 Msa0146770:intron 35.0%
ATTCCTTCGAAACCATTCAC+CGG - chr1_4:6533727-6533746 Msa0146770:three_prime_UTR 40.0%
CAAGTGTATAATCTTGACGG+CGG + chr1_4:6533755-6533774 None:intergenic 40.0%
ACTGAACTGAATGAAGGGAA+AGG + chr1_4:6533801-6533820 None:intergenic 40.0%
TTAGTGATGAGTTAGAAGCG+GGG - chr1_4:6534285-6534304 Msa0146770:CDS 40.0%
! GAAAGTTACCTTCTTTTCCG+CGG + chr1_4:6534407-6534426 None:intergenic 40.0%
TGCTTGATTAGATTGTTGGG+TGG - chr1_4:6534500-6534519 Msa0146770:intron 40.0%
AACAAGAGAGAGAGAGAGTT+GGG - chr1_4:6534552-6534571 Msa0146770:intron 40.0%
TATGTCATTATGTCCTGCCA+TGG - chr1_4:6534829-6534848 Msa0146770:CDS 40.0%
!! GAGTTCTGGTTCTAGTGATA+AGG - chr1_4:6534934-6534953 Msa0146770:intron 40.0%
ACCCAATACCTTGTTCAAAG+GGG + chr1_4:6534967-6534986 None:intergenic 40.0%
GAACCCAATACCTTGTTCAA+AGG + chr1_4:6534969-6534988 None:intergenic 40.0%
! CAAAACTGCCACTGTTTTCA+AGG + chr1_4:6535167-6535186 None:intergenic 40.0%
GAACTAGGTAAACCCACTTA+CGG + chr1_4:6535193-6535212 None:intergenic 40.0%
GGTTAAGGAGAAAACTAGAC+CGG + chr1_4:6535427-6535446 None:intergenic 40.0%
! GGTACAAAAGAAAGGCATGA+AGG - chr1_4:6535498-6535517 Msa0146770:intron 40.0%
! GAAAGGCATGAAGGGTAAAA+TGG - chr1_4:6535507-6535526 Msa0146770:intron 40.0%
AAATGCAGCCAAAACCTCAT+GGG + chr1_4:6535605-6535624 None:intergenic 40.0%
AAAGACATTCTCAACGGATG+AGG - chr1_4:6535627-6535646 Msa0146770:intron 40.0%
ATGAGTAAGACTGATCTGGA+GGG + chr1_4:6535742-6535761 None:intergenic 40.0%
AATGAGTAAGACTGATCTGG+AGG + chr1_4:6535743-6535762 None:intergenic 40.0%
ATGAAAACATACCTGCTCAG+GGG + chr1_4:6535855-6535874 None:intergenic 40.0%
CATCAGACAATTATCAGTCG+TGG + chr1_4:6536363-6536382 None:intergenic 40.0%
ATCAGTCACAAGCACATAGT+AGG + chr1_4:6536455-6536474 None:intergenic 40.0%
TATGTGCTTGTGACTGATGA+TGG - chr1_4:6536457-6536476 Msa0146770:CDS 40.0%
ATGTGCTTGTGACTGATGAT+GGG - chr1_4:6536458-6536477 Msa0146770:CDS 40.0%
CTCTGTGATGCCAAAAGTTA+CGG + chr1_4:6536568-6536587 None:intergenic 40.0%
GATGGCAACGAATAATCCAT+TGG + chr1_4:6536625-6536644 None:intergenic 40.0%
ACATAGGCTGACCAGAAAAT+AGG + chr1_4:6536682-6536701 None:intergenic 40.0%
CAGCCTATGTGCATTCAAAA+TGG - chr1_4:6536692-6536711 Msa0146770:intron 40.0%
ATTTCATCCACAGACAATGG+TGG + chr1_4:6537181-6537200 None:intergenic 40.0%
TTTCAACTGTAGCCTCTGTT+AGG - chr1_4:6537332-6537351 Msa0146770:intron 40.0%
!! TCCCTTTGGCCTTTTTCTTA+AGG + chr1_4:6537783-6537802 None:intergenic 40.0%
TGTGGTAGATCTTATCCCTT+TGG + chr1_4:6537797-6537816 None:intergenic 40.0%
AGGGATAAGATCTACCACAA+TGG - chr1_4:6537798-6537817 Msa0146770:intron 40.0%
ACAATCAACAGCAACCATTG+TGG + chr1_4:6537815-6537834 None:intergenic 40.0%
! GGTTGCTGTTGATTGTGAAA+TGG - chr1_4:6537819-6537838 Msa0146770:intron 40.0%
GAAATGGTTCTCTGTGAAGA+TGG - chr1_4:6537835-6537854 Msa0146770:intron 40.0%
TTGCTCCTTAGCTGATATAC+AGG - chr1_4:6538149-6538168 Msa0146770:intron 40.0%
GTGTAACGAAATTCCTCCAA+AGG + chr1_4:6538656-6538675 None:intergenic 40.0%
AACTCACAAGCAAATTACGG+AGG - chr1_4:6538764-6538783 Msa0146770:CDS 40.0%
!! CTGTTTTGGGCTATGAAGTT+CGG - chr1_4:6538853-6538872 Msa0146770:intron 40.0%
GGCTATGAAGTTCGGAAAAA+GGG - chr1_4:6538861-6538880 Msa0146770:intron 40.0%
GGCTCTTGAACCAATGTTAA+TGG + chr1_4:6538972-6538991 None:intergenic 40.0%
CACTACACGAAATTGTTCCT+GGG - chr1_4:6539160-6539179 Msa0146770:intron 40.0%
ACTACACGAAATTGTTCCTG+GGG - chr1_4:6539161-6539180 Msa0146770:intron 40.0%
GGACTTCACAATAGATCGAA+AGG - chr1_4:6539182-6539201 Msa0146770:intron 40.0%
!! AATGTCAACAAGAGTACCGA+AGG + chr1_4:6539317-6539336 None:intergenic 40.0%
!!! GCTGGGCTATTTTTCTTGTT+TGG - chr1_4:6539345-6539364 Msa0146770:intron 40.0%
TTTCGTGATACCAAAGTAGC+AGG + chr1_4:6539533-6539552 None:intergenic 40.0%
! TCAGGTATTGTGGTAGTGAA+TGG + chr1_4:6539602-6539621 None:intergenic 40.0%
AGGGATTAACTATGCTTCAG+TGG + chr1_4:6539798-6539817 None:intergenic 40.0%
CACAAAGTAATGCACAACAC+TGG + chr1_4:6539854-6539873 None:intergenic 40.0%
! TAGGCATCCTTTTCAACTTC+AGG + chr1_4:6540057-6540076 None:intergenic 40.0%
ACGATTGAAAGAGAGTGAGT+TGG - chr1_4:6540104-6540123 Msa0146770:intron 40.0%
GAGAGAACAGTTGAGGAAAA+AGG - chr1_4:6540140-6540159 Msa0146770:intron 40.0%
GAGGAAAAAGGACTTACAAG+TGG - chr1_4:6540152-6540171 Msa0146770:intron 40.0%
CTTACAAGTGGATGATTCCA+AGG - chr1_4:6540164-6540183 Msa0146770:intron 40.0%
TGATTCCAAGGAAGGAAAAG+TGG - chr1_4:6540176-6540195 Msa0146770:intron 40.0%
!! ATGATCCACTTTTCCTTCCT+TGG + chr1_4:6540184-6540203 None:intergenic 40.0%
GTGCTTCAATCTCTTTCAAG+TGG + chr1_4:6540224-6540243 None:intergenic 40.0%
GAGGGAACAGTTGAGAAAAA+AGG - chr1_4:6540287-6540306 Msa0146770:intron 40.0%
!!! TGCCATGCCTACTACTTTTT+AGG + chr1_4:6540369-6540388 None:intergenic 40.0%
GGCAATGTCTTAAAACCGTT+TGG - chr1_4:6540452-6540471 Msa0146770:intron 40.0%
TTCATCATTCCACTTGCTCA+GGG + chr1_4:6540555-6540574 None:intergenic 40.0%
ATTCATCATTCCACTTGCTC+AGG + chr1_4:6540556-6540575 None:intergenic 40.0%
GTTTCGAAGGAATGTCGTTG+AGG + chr1_4:6533720-6533739 None:intergenic 45.0%
AACTAAGGGCCTGTCTAGAT+TGG + chr1_4:6534236-6534255 None:intergenic 45.0%
CAACAAGAGAGAGAGAGAGT+TGG - chr1_4:6534551-6534570 Msa0146770:intron 45.0%
ACAAGAGAGAGAGAGAGTTG+GGG - chr1_4:6534553-6534572 Msa0146770:intron 45.0%
ATGCAAAACAGTACCATGGC+AGG + chr1_4:6534845-6534864 None:intergenic 45.0%
! GAGTTTTCCCCCTTTGAACA+AGG - chr1_4:6534956-6534975 Msa0146770:intron 45.0%
TCCCCCTTTGAACAAGGTAT+TGG - chr1_4:6534962-6534981 Msa0146770:intron 45.0%
CCCAATACCTTGTTCAAAGG+GGG + chr1_4:6534966-6534985 None:intergenic 45.0%
! CCCCCTTTGAACAAGGTATT+GGG - chr1_4:6534963-6534982 Msa0146770:intron 45.0%
CACAATTACGGTCATGATGC+TGG + chr1_4:6535066-6535085 None:intergenic 45.0%
CAGCATCATGACCGTAATTG+TGG - chr1_4:6535064-6535083 Msa0146770:intron 45.0%
TGCTGCAATCTCTTGAATGG+CGG + chr1_4:6535110-6535129 None:intergenic 45.0%
!! GCAGTTTTGTCTCCGTAAGT+GGG - chr1_4:6535178-6535197 Msa0146770:intron 45.0%
TGAAGGGTAAAATGGGAGAC+TGG - chr1_4:6535515-6535534 Msa0146770:intron 45.0%
GTATGAGCGATCCATCAAAG+AGG - chr1_4:6535578-6535597 Msa0146770:intron 45.0%
! AAAGAGGTCCCATGAGGTTT+TGG - chr1_4:6535594-6535613 Msa0146770:intron 45.0%
GAAATGCAGCCAAAACCTCA+TGG + chr1_4:6535606-6535625 None:intergenic 45.0%
CTCAACGGATGAGGATTTGA+AGG - chr1_4:6535636-6535655 Msa0146770:intron 45.0%
CTTCCTCTTAAAGCCATACC+CGG - chr1_4:6536087-6536106 Msa0146770:intron 45.0%
! CGTAACTTTTGGCATCACAG+AGG - chr1_4:6536566-6536585 Msa0146770:intron 45.0%
TGCTGTGGAAAATGAAGGGA+TGG - chr1_4:6537746-6537765 Msa0146770:intron 45.0%
TGAAGATGGGACTGAAGCTT+TGG - chr1_4:6537849-6537868 Msa0146770:intron 45.0%
ATGACGAGTCACCGAGTAAA+AGG + chr1_4:6537932-6537951 None:intergenic 45.0%
AGCGCAATGCCTCAATCTTT+GGG + chr1_4:6537974-6537993 None:intergenic 45.0%
AAGCGCAATGCCTCAATCTT+TGG + chr1_4:6537975-6537994 None:intergenic 45.0%
TGCATACATCTTCCAACCCT+TGG - chr1_4:6538484-6538503 Msa0146770:CDS 45.0%
TACATCTTCCAACCCTTGGA+TGG - chr1_4:6538488-6538507 Msa0146770:CDS 45.0%
CTGTGAATAGAGCCATCCAA+GGG + chr1_4:6538503-6538522 None:intergenic 45.0%
GGGCTATGAAGTTCGGAAAA+AGG - chr1_4:6538860-6538879 Msa0146770:intron 45.0%
TAGTGCTTCAGTGTTCACAG+TGG + chr1_4:6539145-6539164 None:intergenic 45.0%
GCACTACACGAAATTGTTCC+TGG - chr1_4:6539159-6539178 Msa0146770:intron 45.0%
CAGAACAGTGGGATGCTTAA+AGG + chr1_4:6539226-6539245 None:intergenic 45.0%
TTAAGCATCCCACTGTTCTG+AGG - chr1_4:6539226-6539245 Msa0146770:intron 45.0%
AACCTCTTCCTCAGAACAGT+GGG + chr1_4:6539237-6539256 None:intergenic 45.0%
TGTTGACATTCAGTCACTGC+TGG - chr1_4:6539327-6539346 Msa0146770:intron 45.0%
GTTGACATTCAGTCACTGCT+GGG - chr1_4:6539328-6539347 Msa0146770:intron 45.0%
TTGCTTCAGCCTTCCAGAAA+CGG - chr1_4:6539388-6539407 Msa0146770:intron 45.0%
CTTATCTCCTTGACCGTTTC+TGG + chr1_4:6539404-6539423 None:intergenic 45.0%
! ATGCTCAATGCCTGCTACTT+TGG - chr1_4:6539520-6539539 Msa0146770:intron 45.0%
TGCAGAAACTTGTCACGTGT+CGG - chr1_4:6539893-6539912 Msa0146770:exon 45.0%
CAAGTGGATGATTCCAAGGA+AGG - chr1_4:6540168-6540187 Msa0146770:intron 45.0%
AAGCGGAGATTGAATCATCG+AGG - chr1_4:6540268-6540287 Msa0146770:intron 45.0%
AGCGGAGATTGAATCATCGA+GGG - chr1_4:6540269-6540288 Msa0146770:intron 45.0%
AAAAGTAGTAGGCATGGCAC+TGG - chr1_4:6540370-6540389 Msa0146770:intron 45.0%
!! AAATTTTGGCCCTGAGCAAG+TGG - chr1_4:6540543-6540562 Msa0146770:five_prime_UTR 45.0%
CGGCGACTGAACTGAATGAA+GGG + chr1_4:6533806-6533825 None:intergenic 50.0%
CCTTCATTCAGTTCAGTCGC+CGG - chr1_4:6533804-6533823 Msa0146770:three_prime_UTR 50.0%
! AGGTTAACTTGGGGCCTGTT+TGG - chr1_4:6533953-6533972 Msa0146770:CDS 50.0%
TGAGTTAGAAGCGGGGTTAG+TGG - chr1_4:6534292-6534311 Msa0146770:CDS 50.0%
! GAGTTAGAAGCGGGGTTAGT+GGG - chr1_4:6534293-6534312 Msa0146770:CDS 50.0%
GGATGAGAAGATTGACACCG+CGG - chr1_4:6534387-6534406 Msa0146770:CDS 50.0%
GATTGACACCGCGGAAAAGA+AGG - chr1_4:6534396-6534415 Msa0146770:intron 50.0%
GCGTGCTGCAATCTCTTGAA+TGG + chr1_4:6535113-6535132 None:intergenic 50.0%
!! GGCAGTTTTGTCTCCGTAAG+TGG - chr1_4:6535177-6535196 Msa0146770:intron 50.0%
GGGTAAAATGGGAGACTGGA+AGG - chr1_4:6535519-6535538 Msa0146770:intron 50.0%
TCCATCAAAGAGGTCCCATG+AGG - chr1_4:6535588-6535607 Msa0146770:intron 50.0%
ACCTCATGGGACCTCTTTGA+TGG + chr1_4:6535592-6535611 None:intergenic 50.0%
!! CGGGTATGGCTTTAAGAGGA+AGG + chr1_4:6536089-6536108 None:intergenic 50.0%
AAGCCAAAGACACATGCAGC+CGG + chr1_4:6536109-6536128 None:intergenic 50.0%
!! TAGGGTGCTGGAGAGTTACT+TGG + chr1_4:6536597-6536616 None:intergenic 50.0%
CCATTGGATACATAGGGTGC+TGG + chr1_4:6536609-6536628 None:intergenic 50.0%
CCAGCACCCTATGTATCCAA+TGG - chr1_4:6536606-6536625 Msa0146770:intron 50.0%
!! AAAAGCGCCACCATTGTCTG+TGG - chr1_4:6537171-6537190 Msa0146770:intron 50.0%
TGTAGCCTCTGTTAGGAGAG+AGG - chr1_4:6537339-6537358 Msa0146770:intron 50.0%
TAAGGCCTCTCTCCTAACAG+AGG + chr1_4:6537347-6537366 None:intergenic 50.0%
TTTGGGCAGGTAGGGAAGAA+GGG + chr1_4:6537957-6537976 None:intergenic 50.0%
CCTCAATCTTTGGGCAGGTA+GGG + chr1_4:6537965-6537984 None:intergenic 50.0%
CAATGCCTCAATCTTTGGGC+AGG + chr1_4:6537970-6537989 None:intergenic 50.0%
GAATAGAGCCATCCAAGGGT+TGG + chr1_4:6538499-6538518 None:intergenic 50.0%
CCTGTGAATAGAGCCATCCA+AGG + chr1_4:6538504-6538523 None:intergenic 50.0%
! CCTTGGATGGCTCTATTCAC+AGG - chr1_4:6538501-6538520 Msa0146770:intron 50.0%
ATCTGTGCTTGTCTGCGCTT+TGG - chr1_4:6538712-6538731 Msa0146770:CDS 50.0%
GCTTCAGTGTTCACAGTGGT+TGG + chr1_4:6539141-6539160 None:intergenic 50.0%
CGATCTATTGTGAAGTCCCC+AGG + chr1_4:6539180-6539199 None:intergenic 50.0%
!! ATCCCACTGTTCTGAGGAAG+AGG - chr1_4:6539232-6539251 Msa0146770:intron 50.0%
GAACCTCTTCCTCAGAACAG+TGG + chr1_4:6539238-6539257 None:intergenic 50.0%
! TCTCCTTGACCGTTTCTGGA+AGG + chr1_4:6539400-6539419 None:intergenic 50.0%
ATGCATCATGTGCCTCTCGT+TGG + chr1_4:6539453-6539472 None:intergenic 50.0%
TGTCCAAGGCAGCCAAACAA+AGG - chr1_4:6539480-6539499 Msa0146770:intron 50.0%
! GTACCTTTGTTTGGCTGCCT+TGG + chr1_4:6539486-6539505 None:intergenic 50.0%
AGATTTACCAGAGGGCGAGA+TGG - chr1_4:6539996-6540015 Msa0146770:intron 50.0%
! GTAGGCATGGCACTGGAATA+TGG - chr1_4:6540377-6540396 Msa0146770:intron 50.0%
TATAATCTTGACGGCGGCGC+CGG + chr1_4:6533749-6533768 None:intergenic 55.0%
CCGGCGACTGAACTGAATGA+AGG + chr1_4:6533807-6533826 None:intergenic 55.0%
CGGTCATGATGCTGGTGCAA+TGG + chr1_4:6535058-6535077 None:intergenic 55.0%
ATCTCACGATTCCCCTGAGC+AGG - chr1_4:6535841-6535860 Msa0146770:intron 55.0%
!! CAGCCGGGTATGGCTTTAAG+AGG + chr1_4:6536093-6536112 None:intergenic 55.0%
AAGACACATGCAGCCGGGTA+TGG + chr1_4:6536103-6536122 None:intergenic 55.0%
TACCCGGCTGCATGTGTCTT+TGG - chr1_4:6536103-6536122 Msa0146770:intron 55.0%
AGCCAAAGACACATGCAGCC+GGG + chr1_4:6536108-6536127 None:intergenic 55.0%
TTGGGCAGGTAGGGAAGAAG+GGG + chr1_4:6537956-6537975 None:intergenic 55.0%
CTTTGGGCAGGTAGGGAAGA+AGG + chr1_4:6537958-6537977 None:intergenic 55.0%
CCCTACCTGCCCAAAGATTG+AGG - chr1_4:6537962-6537981 Msa0146770:intron 55.0%
GCCTCAATCTTTGGGCAGGT+AGG + chr1_4:6537966-6537985 None:intergenic 55.0%
CAGCCTTCCAGAAACGGTCA+AGG - chr1_4:6539394-6539413 Msa0146770:intron 55.0%
!! TGTCACGTGTCGGCTGAGTA+CGG - chr1_4:6539903-6539922 Msa0146770:exon 55.0%
ACATCAACCATCTCGCCCTC+TGG + chr1_4:6540006-6540025 None:intergenic 55.0%
! GCGCCGGTGAATGGTTTCGA+AGG + chr1_4:6533733-6533752 None:intergenic 60.0%
TTGCAGCACGCTTGCAACCG+CGG - chr1_4:6535122-6535141 Msa0146770:CDS 60.0%
GGGGAGCAGCAAGCCCAAAA+GGG + chr1_4:6539817-6539836 None:intergenic 60.0%
!! GTCACGTGTCGGCTGAGTAC+GGG - chr1_4:6539904-6539923 Msa0146770:exon 60.0%
GGGGGAGCAGCAAGCCCAAA+AGG + chr1_4:6539818-6539837 None:intergenic 65.0%
!! TTGACGGCGGCGCCGGTGAA+TGG + chr1_4:6533742-6533761 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 6533556 6540734 6533556 ID=Msa0146770;Name=Msa0146770
chr1_4 mRNA 6533556 6540734 6533556 ID=Msa0146770-mRNA-1;Parent=Msa0146770;Name=Msa0146770-mRNA-1;_AED=0.08;_eAED=0.08;_QI=264|0.91|0.84|1|0.83|0.69|13|357|540
chr1_4 exon 6533556 6534413 6533556 ID=Msa0146770-mRNA-1:exon:2853;Parent=Msa0146770-mRNA-1
chr1_4 exon 6534789 6534893 6534789 ID=Msa0146770-mRNA-1:exon:2852;Parent=Msa0146770-mRNA-1
chr1_4 exon 6535087 6535194 6535087 ID=Msa0146770-mRNA-1:exon:2851;Parent=Msa0146770-mRNA-1
chr1_4 exon 6535298 6535419 6535298 ID=Msa0146770-mRNA-1:exon:2850;Parent=Msa0146770-mRNA-1
chr1_4 exon 6535751 6535840 6535751 ID=Msa0146770-mRNA-1:exon:2849;Parent=Msa0146770-mRNA-1
chr1_4 exon 6535970 6536039 6535970 ID=Msa0146770-mRNA-1:exon:2848;Parent=Msa0146770-mRNA-1
chr1_4 exon 6536120 6536236 6536120 ID=Msa0146770-mRNA-1:exon:2847;Parent=Msa0146770-mRNA-1
chr1_4 exon 6536387 6536527 6536387 ID=Msa0146770-mRNA-1:exon:2846;Parent=Msa0146770-mRNA-1
chr1_4 exon 6537636 6537704 6537636 ID=Msa0146770-mRNA-1:exon:2845;Parent=Msa0146770-mRNA-1
chr1_4 exon 6538428 6538511 6538428 ID=Msa0146770-mRNA-1:exon:2844;Parent=Msa0146770-mRNA-1
chr1_4 exon 6538633 6538815 6538633 ID=Msa0146770-mRNA-1:exon:2843;Parent=Msa0146770-mRNA-1
chr1_4 exon 6539873 6539940 6539873 ID=Msa0146770-mRNA-1:exon:2842;Parent=Msa0146770-mRNA-1
chr1_4 exon 6540506 6540734 6540506 ID=Msa0146770-mRNA-1:exon:2841;Parent=Msa0146770-mRNA-1
chr1_4 five_prime_UTR 6540506 6540734 6540506 ID=Msa0146770-mRNA-1:five_prime_utr;Parent=Msa0146770-mRNA-1
chr1_4 five_prime_UTR 6539906 6539940 6539906 ID=Msa0146770-mRNA-1:five_prime_utr;Parent=Msa0146770-mRNA-1
chr1_4 CDS 6539873 6539905 6539873 ID=Msa0146770-mRNA-1:cds;Parent=Msa0146770-mRNA-1
chr1_4 CDS 6538633 6538815 6538633 ID=Msa0146770-mRNA-1:cds;Parent=Msa0146770-mRNA-1
chr1_4 CDS 6538428 6538511 6538428 ID=Msa0146770-mRNA-1:cds;Parent=Msa0146770-mRNA-1
chr1_4 CDS 6537636 6537704 6537636 ID=Msa0146770-mRNA-1:cds;Parent=Msa0146770-mRNA-1
chr1_4 CDS 6536387 6536527 6536387 ID=Msa0146770-mRNA-1:cds;Parent=Msa0146770-mRNA-1
chr1_4 CDS 6536120 6536236 6536120 ID=Msa0146770-mRNA-1:cds;Parent=Msa0146770-mRNA-1
chr1_4 CDS 6535970 6536039 6535970 ID=Msa0146770-mRNA-1:cds;Parent=Msa0146770-mRNA-1
chr1_4 CDS 6535751 6535840 6535751 ID=Msa0146770-mRNA-1:cds;Parent=Msa0146770-mRNA-1
chr1_4 CDS 6535298 6535419 6535298 ID=Msa0146770-mRNA-1:cds;Parent=Msa0146770-mRNA-1
chr1_4 CDS 6535087 6535194 6535087 ID=Msa0146770-mRNA-1:cds;Parent=Msa0146770-mRNA-1
chr1_4 CDS 6534789 6534893 6534789 ID=Msa0146770-mRNA-1:cds;Parent=Msa0146770-mRNA-1
chr1_4 CDS 6533913 6534413 6533913 ID=Msa0146770-mRNA-1:cds;Parent=Msa0146770-mRNA-1
chr1_4 three_prime_UTR 6533556 6533912 6533556 ID=Msa0146770-mRNA-1:three_prime_utr;Parent=Msa0146770-mRNA-1
Gene Sequence

>Msa0146770

ATGGATGAGAAGATTGACACCGCGGAAAAGAAGGTGTTGGTTGATATTGTAAAATTGGTACAAAAGAAAGGCATGAAGGGTAAAATGGGAGACTGGAAGGAATTCCTGAACAGTAATGATAAAAAATATGGGTCAGGTATGAGCGATCCATCAAAGAGGTCCCATGAGGTTTTGGCTGCATTTCTAAAGACATTCTCAACGGATGAGGATTTGAAGTTTTTTGGCAACATCATGCGGCATCATTCAAATCAATACACATTAGAGCGACTGAAAGATAGATCTCACGATTCCCCTGAGCAGAGGCTAGTCCAAGTAACTCTCCAGCACCCTATGTATCCAATGGATTATTCGTTGCCATCTATTGATAAGGGATGGTTAGTGATAAACCTTAAGAAAAAGGCCAAAGGGATAAGATCTACCACAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCTTTGGTCAAAGTCTGTGTTGTAGATCACAATTTAGAGGTCAAATTACACAAACTTGTTAAACCGGAGAAAGCAATCAAAGACTACAAAACAGAGATTACTGGTGTCTCTGCTCAAGATCTAGAGACAGTGACTTGCTCCTTAGCTGATATACAGAAATCGATGAAGAAGTTGTTATCCAATGGAACCATATTAGTTGGACACAGTTTATATAATGATCTACGTGTGCTGAAGCTTGATTATGTTAGAGTGGTCGACACTGCATACATCTTCCAACCCTTGGATGGCTCTATTCACAGGAGACCTTCGTTGAATATTCGGAAAAAGGGTGCTTCGCATGATTGTCTAGATGATGCATGTGCAACAATGAAACTTGTTCTTGCAAAGATCAAACATGGTGTTGATAAGCCATTTCCATTAACATTGGTTCAAGAGCCTGTTTCAGAAAGTGAGATGGCGAAGCTGCTTATTCACAGAATACCAACCACTGTGAACACTGAAGCACTACACGAAATTGTTCCTGGGGACTTCACAATAGATCGAAAGCCTTCCAGAAACGGTCAAGGAGATAAGTATTCTGCCTTAGCTATTTTTAAGAACCAACGAGAGGCACATGATGCATATGAAAATGTCCAAGGCAGCCAAACAAAGGACTCAAATGGGCGTCTGCAGAAACTTGTCACGTGTCGGCTGAGTACGGGCATGAGTGTCAGTTTATTTGTTCGGAAAATGGGAATTGATGATCACCACAAAAAAATGCCATCTAAGAGAGATTTACCAGAGGGCGAGATGGTTGATGTTCCCGAGAACAAGAAAGTAAAAATGGATCCTGAAGTTGAAAAGGATGCCTACTTGAAAGAGATTGAAACACTGAATCAACGATTGAAAGAGAGTGAGTTGGAGATTGAATCATTGAGAGAACAGTTGAGGAAAAAGGACTTACAAGTGGATGATTCCAAGGAAGGAAAAGTGGATCATGAAATTGAAAAGGATGCCCACTTGAAAGAGATTGAAGCACTGAACCAACGATTGAAAGAAAGTGAAGCGGAGATTGAATCATCGAGGGAACAGTTGAGAAAAAAGGACTTCGAAATTACTGCTCTGCATAAAATGGTAGCTAACATACAAAAAAGGCAAAAACCTAAAAAGTAG

Protein sequence

>Msa0146770

MDEKIDTAEKKVLVDIVKLVQKKGMKGKMGDWKEFLNSNDKKYGSGMSDPSKRSHEVLAAFLKTFSTDEDLKFFGNIMRHHSNQYTLERLKDRSHDSPEQRLVQVTLQHPMYPMDYSLPSIDKGWLVINLKKKAKGIRSTTMVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLHKLVKPEKAIKDYKTEITGVSAQDLETVTCSLADIQKSMKKLLSNGTILVGHSLYNDLRVLKLDYVRVVDTAYIFQPLDGSIHRRPSLNIRKKGASHDCLDDACATMKLVLAKIKHGVDKPFPLTLVQEPVSESEMAKLLIHRIPTTVNTEALHEIVPGDFTIDRKPSRNGQGDKYSALAIFKNQREAHDAYENVQGSQTKDSNGRLQKLVTCRLSTGMSVSLFVRKMGIDDHHKKMPSKRDLPEGEMVDVPENKKVKMDPEVEKDAYLKEIETLNQRLKESELEIESLREQLRKKDLQVDDSKEGKVDHEIEKDAHLKEIEALNQRLKESEAEIESSREQLRKKDFEITALHKMVANIQKRQKPKK*