AlfalfaGEDB | Msa0706900

M. sativa cultivar zhongmu-4 / Msa0706900

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706900	XP_013447280.1	99.482	386	2	0	1	386	1	386	0.0	798

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706900	sp\|Q8H1E3\|PBL17_ARATH	67.822	404	107	3	1	382	1	403	0.0	559

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706900	A0A072TV36	99.482	386	2	0	1	386	1	386	0.0	798

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0093850	Msa0706900	0.827118	1.866358e-54	-8.615850e-47
Msa0106320	Msa0706900	0.824797	6.643733e-54	-8.615850e-47
Msa0138360	Msa0706900	0.803484	3.409612e-49	-8.615850e-47
Msa0225480	Msa0706900	0.842853	2.006879e-58	-8.615850e-47
Msa0279850	Msa0706900	0.808544	2.940370e-50	-8.615850e-47
Msa0281470	Msa0706900	0.816856	4.456801e-52	-8.615850e-47
Msa0341690	Msa0706900	0.811464	6.909320e-51	-8.615850e-47
Msa0479200	Msa0706900	0.806505	7.964061e-50	-8.615850e-47
Msa0652000	Msa0706900	0.825585	4.325976e-54	-8.615850e-47
Msa0706900	Msa1076560	0.807613	4.640520e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706900	MtrunA17_Chr8g0388941	99.482	386	2	0	1	386	1	386	0.0	798
Msa0706900	MtrunA17_Chr7g0245571	71.429	301	86	0	53	353	73	373	7.29e-161	459
Msa0706900	MtrunA17_Chr4g0070411	66.221	299	101	0	54	352	68	366	2.18e-145	422
Msa0706900	MtrunA17_Chr2g0328171	56.640	369	152	4	1	361	1	369	3.04e-145	418
Msa0706900	MtrunA17_Chr2g0300711	61.584	341	120	2	21	352	22	360	7.09e-144	419
Msa0706900	MtrunA17_Chr1g0150741	63.871	310	111	1	44	352	55	364	6.02e-143	411
Msa0706900	MtrunA17_Chr8g0380441	56.704	358	153	2	1	356	1	358	1.43e-142	410
Msa0706900	MtrunA17_Chr5g0435211	56.474	363	147	5	1	353	1	362	3.06e-142	410
Msa0706900	MtrunA17_Chr7g0216551	59.706	340	125	4	54	385	106	441	3.92e-142	412
Msa0706900	MtrunA17_Chr8g0362661	66.000	300	97	3	54	349	117	415	2.41e-141	411

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706900	AT2G07180.1	67.822	404	107	3	1	382	1	403	0.0	559
Msa0706900	AT2G07180.2	67.822	404	107	3	1	382	1	403	0.0	559
Msa0706900	AT5G01020.1	70.588	306	90	0	48	353	46	351	1.80e-162	462
Msa0706900	AT2G05940.1	66.555	299	100	0	54	352	70	368	4.92e-146	422
Msa0706900	AT5G56460.1	55.495	364	154	4	1	356	1	364	6.39e-141	407
Msa0706900	AT5G02290.2	60.064	313	120	2	54	361	51	363	1.24e-140	405
Msa0706900	AT5G02290.1	60.064	313	120	2	54	361	51	363	1.24e-140	405
Msa0706900	AT2G28930.2	56.787	361	149	3	1	356	1	359	5.36e-139	402
Msa0706900	AT2G28930.3	56.131	367	145	4	1	356	1	362	6.84e-139	402
Msa0706900	AT2G28930.1	62.541	307	110	2	55	356	64	370	1.85e-138	401

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Find 115 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAAAGGAATGGAAG+TGG	0.555557	4_4:-80127166	None:intergenic
AAAGAACTTCGCGAAGGTGC+TGG	0.446855	4_4:+80127462	Msa0706900:CDS
AAATGTCGTGATTGTGATTT+CGG	0.310655	4_4:+80127210	Msa0706900:five_prime_UTR
AAATTTGGTTAGCTCTTAGT+TGG	0.398761	4_4:-80131602	None:intergenic
AACAGAAATGGAAGCAAATG+TGG	0.546295	4_4:+80127018	None:intergenic
AAGAATGATTCAAACAGTGA+AGG	0.616310	4_4:-80127099	None:intergenic
AAGACATTGGTATGCTAAAA+GGG	0.485950	4_4:-80131426	None:intergenic
AAGCAGAACGCAACCTTCAA+AGG	0.510096	4_4:+80131665	Msa0706900:three_prime_UTR
AAGCAGACCTCTTATGAGCC+AGG	0.525580	4_4:+80131463	Msa0706900:CDS
AAGGCCAAAGTCTGAAAGCT+TGG	0.526114	4_4:-80130135	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAATGATTCAAACAGTGA+AGG	-	chr4_4:80127102-80127121	None:intergenic	30.0%
AAATGTCGTGATTGTGATTT+CGG	+	chr4_4:80127210-80127229	Msa0706900:five_prime_UTR	30.0%
GAATCATTTCCAACTGAAAT+CGG	-	chr4_4:80127399-80127418	None:intergenic	30.0%
ATTTCAGTTGGAAATGATTC+CGG	+	chr4_4:80127399-80127418	Msa0706900:intron	30.0%
TTCTTTGATATTCATGGAAC+CGG	-	chr4_4:80127448-80127467	None:intergenic	30.0%
ACCTTCTCCTAAAATGAAAT+CGG	-	chr4_4:80127550-80127569	None:intergenic	30.0%
TATCACATCTAGTAAAACTG+AGG	+	chr4_4:80128252-80128271	Msa0706900:intron	30.0%
AACATATTTGTAACTGGTAC+TGG	+	chr4_4:80128688-80128707	Msa0706900:intron	30.0%
ACATATTTGTAACTGGTACT+GGG	+	chr4_4:80128689-80128708	Msa0706900:intron	30.0%
ACCAAGTCAAATTTCAAAAG+AGG	-	chr4_4:80129052-80129071	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	80127020	80132143	80127020	ID=Msa0706900;Name=Msa0706900
chr4_4	mRNA	80127020	80132143	80127020	ID=Msa0706900-mRNA-1;Parent=Msa0706900;Name=Msa0706900-mRNA-1;_AED=0.12;_eAED=0.12;_QI=228\|1\|1\|1\|1\|1\|6\|527\|386
chr4_4	exon	80127020	80127323	80127020	ID=Msa0706900-mRNA-1:exon:25934;Parent=Msa0706900-mRNA-1
chr4_4	exon	80127406	80127689	80127406	ID=Msa0706900-mRNA-1:exon:25935;Parent=Msa0706900-mRNA-1
chr4_4	exon	80128482	80128617	80128482	ID=Msa0706900-mRNA-1:exon:25936;Parent=Msa0706900-mRNA-1
chr4_4	exon	80129535	80129671	80129535	ID=Msa0706900-mRNA-1:exon:25937;Parent=Msa0706900-mRNA-1
chr4_4	exon	80130125	80130248	80130125	ID=Msa0706900-mRNA-1:exon:25938;Parent=Msa0706900-mRNA-1
chr4_4	exon	80131213	80132143	80131213	ID=Msa0706900-mRNA-1:exon:25939;Parent=Msa0706900-mRNA-1
chr4_4	five_prime_UTR	80127020	80127247	80127020	ID=Msa0706900-mRNA-1:five_prime_utr;Parent=Msa0706900-mRNA-1
chr4_4	CDS	80127248	80127323	80127248	ID=Msa0706900-mRNA-1:cds;Parent=Msa0706900-mRNA-1
chr4_4	CDS	80127406	80127689	80127406	ID=Msa0706900-mRNA-1:cds;Parent=Msa0706900-mRNA-1
chr4_4	CDS	80128482	80128617	80128482	ID=Msa0706900-mRNA-1:cds;Parent=Msa0706900-mRNA-1
chr4_4	CDS	80129535	80129671	80129535	ID=Msa0706900-mRNA-1:cds;Parent=Msa0706900-mRNA-1
chr4_4	CDS	80130125	80130248	80130125	ID=Msa0706900-mRNA-1:cds;Parent=Msa0706900-mRNA-1
chr4_4	CDS	80131213	80131616	80131213	ID=Msa0706900-mRNA-1:cds;Parent=Msa0706900-mRNA-1
chr4_4	three_prime_UTR	80131617	80132143	80131617	ID=Msa0706900-mRNA-1:three_prime_utr;Parent=Msa0706900-mRNA-1

Gene Sequence

>Msa0706900

ATGGGGATTTGCTTCAGCATCATTGAACAAGAACATAATCACATTTCTCTTTCCGATTCTAAACCTAAATCCGCAGTTGGAAATGATTCCGGTGCACGAACGACTCCATTAGGTACCGGTTCCATGAATATCAAAGAACTTCGCGAAGGTGCTGGATACAGCAACGTTCACATTTTTACTTACAACGAATTGAGACTCGCTACCAAACAATTTCGTCCCGATTTCATTTTAGGAGAAGGTGGATTTGGTGTTGTGTATAAAGGTGTTATTGATGATAGTGTAAGGGCTGGTTATAAATCCACTGAAGTCGCCATTAAAGAACTTAACCGCGAAGGATTTCAAGGCGATCGTGAATGGCTTGCTGAAGTTAACTATTTGGGTCAATTCAGTCACCCGAATCTCGTAAAGCTCTTTGGATACTGCTGTGAGGATGAACACCGGTTGTTGGTCTATGAATACATGGCTAGTGACAGCTTGGAGAAACATCTTTTTCGCAGAGCGGGCTCAACATTGACTTGGTCTAAAAGAATGAAGATTGCTTTGCATGCTGCAAGAGGGCTTGCTTTTCTTCATGGTGCAGAAAGGCCTATCATATATCGTGACTTCAAGACATCAAATATCTTGCTAGATGCGGATTTCAATGCCAAGCTTTCAGACTTTGGCCTTGCAAAGGATGGGCCGATGGGGGATCAAACACATGTTTCAACTCGAGTAATGGGCACATATGGATATGCTGCTCCGGAGTATGTCATGACTGGGCATTTGACTGCTCGAAGCGATGTGTATGGTTTTGGAGTGGTGCTACTGGAATTACTTATTGGTAGGAGAGCACTAGACAAGAGTAGGCCTAGCCGAGAGCACAACTTGGTTGAATGGGCTCGCCCGTTGTTGAATCATAATAAAAAACTTCTGAAAATTTTAGACCCGAAAGTTGAAGGGCAATATTCAAGTAAAACTGCAACAAAGGTGGCCCTTTTAGCATACCAATGTCTTAGCCAAAACCCGAAAAGCAGACCTCTTATGAGCCAGGTTGTTGAAATCCTTGAAAACTTTCAGTCAAAGGAGGAAAACGAGGAAGATAAAATCCTTCAAAGTGGTGGTAGCAGTGTAACCATTTATGAGGTTCCAAAGAGCAGCAATGACACTCCAACTAAGAGCTAA

Protein sequence

>Msa0706900

MGICFSIIEQEHNHISLSDSKPKSAVGNDSGARTTPLGTGSMNIKELREGAGYSNVHIFTYNELRLATKQFRPDFILGEGGFGVVYKGVIDDSVRAGYKSTEVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLFGYCCEDEHRLLVYEYMASDSLEKHLFRRAGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLELLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKVEGQYSSKTATKVALLAYQCLSQNPKSRPLMSQVVEILENFQSKEENEEDKILQSGGSSVTIYEVPKSSNDTPTKS*