AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479200 MtrunA17_Chr3g0141921 84.835 455 57 3 3 454 21 466 0.0 729
Msa0479200 MtrunA17_Chr2g0331991 30.238 463 226 15 68 449 263 709 1.26e-41 157
Msa0479200 MtrunA17_Chr4g0004211 29.412 442 235 10 68 448 232 657 7.24e-41 154
Msa0479200 MtrunA17_Chr4g0034861 28.764 445 240 11 68 449 202 632 5.04e-39 149
Msa0479200 MtrunA17_Chr3g0141911 50.000 170 48 6 271 439 34 167 2.87e-37 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479200 AT1G75420.2 82.038 373 67 0 80 452 1 373 0.0 636
Msa0479200 AT1G75420.1 80.549 401 78 0 52 452 58 458 0.0 627
Msa0479200 AT1G75420.3 80.549 401 78 0 52 452 32 432 0.0 625
Msa0479200 AT1G19710.1 79.837 367 73 1 87 452 103 469 0.0 600
Msa0479200 AT1G52420.1 30.137 438 241 10 68 449 241 669 1.41e-44 165
Msa0479200 AT3G15940.2 28.970 466 235 12 68 449 243 696 8.94e-38 146
Msa0479200 AT3G15940.1 28.970 466 235 12 68 449 243 696 8.94e-38 146

Find 125 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATCAATTTACAATTTAA+TGG 0.196158 3_3:+84070119 None:intergenic
TGCACATAACATTGTGAAAT+TGG 0.197530 3_3:-84070301 Msa0479200:CDS
ACGAAATGCCATTGCTTCTA+TGG 0.222266 3_3:+84071632 None:intergenic
TCGCACGAACTATCTCTTTC+TGG 0.249455 3_3:-84074196 Msa0479200:CDS
TAAATTGATTCCAAAGAAAA+AGG 0.249712 3_3:-84070108 Msa0479200:three_prime_UTR
CCCACTTCCTTTGTTCTGTA+TGG 0.261172 3_3:-84070049 Msa0479200:three_prime_UTR
GTGGCTGGATGCCGTCTTAA+AGG 0.261650 3_3:-84072956 Msa0479200:CDS
GGGTTCTTCGTGAGCATGTT+AGG 0.272900 3_3:-84072582 Msa0479200:CDS
AATAGGACCAGGGAGAGTTT+AGG 0.282610 3_3:-84072790 Msa0479200:CDS
TGATCAGGTTATTTATAGTT+TGG 0.290255 3_3:-84074083 Msa0479200:CDS
TGGAAATAGCAAGGAACTTA+TGG 0.291694 3_3:-84072632 Msa0479200:CDS
AGATGTACAACATAAGTTTC+AGG 0.314019 3_3:+84072655 None:intergenic
TGAAAGTTTGCAGCTCATTC+AGG 0.315271 3_3:-84072226 Msa0479200:CDS
GAGAGTGAAAGAGAGGTTTC+TGG 0.327030 3_3:-84070232 Msa0479200:CDS
ATAGGACCAGGGAGAGTTTA+GGG 0.339089 3_3:-84072789 Msa0479200:intron
TCTTTGCATGCTATAGTTGT+AGG 0.358411 3_3:-84072183 Msa0479200:CDS
GTCACACCATCCTTGCCTTC+AGG 0.359263 3_3:+84070330 None:intergenic
CAGTCACGGGGAGAATGTTT+TGG 0.367113 3_3:-84071663 Msa0479200:CDS
TGTTGAGAAGAGGCTGACTA+TGG 0.372554 3_3:-84070271 Msa0479200:CDS
ACTGTGGAGATCGTGGTTAA+TGG 0.373098 3_3:-84070372 Msa0479200:CDS
GAAACTTATGTTGTACATCT+TGG 0.390726 3_3:-84072652 Msa0479200:CDS
AATGTTGGACAGAGGAGTTC+AGG 0.395727 3_3:-84074053 Msa0479200:intron
CTGCAGAGTACTGGAAGAAT+AGG 0.404454 3_3:-84072807 Msa0479200:CDS
CTAGGTAAGGAGCCACTGTC+AGG 0.405315 3_3:+84072064 None:intergenic
CTGTGGAGATCGTGGTTAAT+GGG 0.408149 3_3:-84070371 Msa0479200:CDS
TGCTCAGACAAAGTTTGAAA+TGG 0.409480 3_3:-84072148 Msa0479200:CDS
TTCATGAAATCCAAGGGGCT+TGG 0.414417 3_3:+84074240 None:intergenic
GTGTTGGTTCTGATGTTGTT+TGG 0.416917 3_3:-84074132 Msa0479200:CDS
ATCATAGCACCTGCAACAAA+AGG 0.424798 3_3:+84072844 None:intergenic
TACAGCTCTTAAAGCTGATC+TGG 0.435509 3_3:-84073007 Msa0479200:CDS
ATCGTGGTTAATGGGACAAC+CGG 0.438418 3_3:-84070363 Msa0479200:CDS
CAGGTGTTTCACGTGGTAAA+GGG 0.445043 3_3:-84072275 Msa0479200:CDS
GCAGGTGTTTCACGTGGTAA+AGG 0.451121 3_3:-84072276 Msa0479200:intron
TAATGGTGAAGTTCCTAAGC+TGG 0.455786 3_3:+84070136 None:intergenic
ACAATTAAATTAACCAGCTT+AGG 0.455925 3_3:-84070149 Msa0479200:exon
TTGTGCTTCGAAGGTCTTTG+TGG 0.458837 3_3:+84074308 None:intergenic
ATGAAAGCTAGTAACATTAA+CGG 0.460740 3_3:+84074390 None:intergenic
CCTGCCTGCAAAAGGTGAAA+AGG 0.463848 3_3:-84073037 Msa0479200:CDS
CTGATTCTGTTGTGCTTCGA+AGG 0.467931 3_3:+84074299 None:intergenic
CACATATAACTGCAGAGTAC+TGG 0.470342 3_3:-84072816 Msa0479200:CDS
CTTTGTGGTGTTGCATGAAT+CGG 0.474570 3_3:+84074323 None:intergenic
ATTCTAAATACTGCTGTAGC+TGG 0.475189 3_3:-84072982 Msa0479200:CDS
GGCATTTCGTCTGCCTGTAC+TGG 0.475966 3_3:-84071619 Msa0479200:intron
TCCGTCGGAAATGCACCATC+TGG 0.478042 3_3:-84074264 Msa0479200:CDS
TAGTTTGGAGAGTAAAATGT+TGG 0.480059 3_3:-84074068 Msa0479200:CDS
TTGCATGAATCGGAATTGTT+CGG 0.482273 3_3:+84074333 None:intergenic
GCCTTCAGGATGCAGCAAAC+CGG 0.485028 3_3:+84070344 None:intergenic
TGCTGTAGCTGGAAAGTGGC+TGG 0.486096 3_3:-84072971 Msa0479200:CDS
TGATAGGTCCTGCCTGCAAA+AGG 0.486905 3_3:-84073045 Msa0479200:intron
TGTTCTTGTTCAGAATTCTC+AGG 0.489341 3_3:-84072031 Msa0479200:intron
GGTTCTTCGTGAGCATGTTA+GGG 0.489601 3_3:-84072581 Msa0479200:CDS
AGGCTGACTATGGGAAAGAA+AGG 0.492284 3_3:-84070261 Msa0479200:CDS
TGAATCCACCATAAAACCTT+CGG 0.503051 3_3:+84072913 None:intergenic
GTATCCTGCTGAACATGATC+AGG 0.504998 3_3:-84074098 Msa0479200:CDS
CTTTGCATGCTATAGTTGTA+GGG 0.505856 3_3:-84072182 Msa0479200:CDS
CAGAAGATAGTGTAGCAAAG+AGG 0.510374 3_3:-84072603 Msa0479200:CDS
CTTCGATTTCATGAAATCCA+AGG 0.514716 3_3:+84074233 None:intergenic
TTCGATTTCATGAAATCCAA+GGG 0.516013 3_3:+84074234 None:intergenic
GGCGAAGCATTCAGTAGCAT+TGG 0.516216 3_3:-84074427 Msa0479200:five_prime_UTR
TGGTGCATTTCCGACGGAAG+AGG 0.519098 3_3:+84074269 None:intergenic
CTGCAATTCTATGTGACATA+TGG 0.519548 3_3:+84070205 None:intergenic
AGAAAATATGTATTACCCAT+TGG 0.523554 3_3:-84069880 Msa0479200:three_prime_UTR
GGTATGAGAGAGTGAAAGAG+AGG 0.524664 3_3:-84070239 Msa0479200:CDS
GCCAATTCCATCAAAAGTAA+AGG 0.527566 3_3:+84074169 None:intergenic
AGAAGATAGTGTAGCAAAGA+GGG 0.528791 3_3:-84072602 Msa0479200:CDS
ATAACCTGATCATGTTCAGC+AGG 0.529328 3_3:+84074094 None:intergenic
AGTTACCCTCGTTCTTCCGA+AGG 0.529697 3_3:-84072929 Msa0479200:CDS
TCCAAGGGGCTTGGACCAGA+TGG 0.531755 3_3:+84074249 None:intergenic
GAGCATGTTAGGGAATCTCT+TGG 0.531903 3_3:-84072571 Msa0479200:CDS
ACAACTATAGCATGCAAAGA+TGG 0.532628 3_3:+84072186 None:intergenic
TAGCATTGGCGAAGAAAAGA+TGG 0.533158 3_3:-84074413 Msa0479200:exon
GTTCTGTATGGATGCGTAGT+GGG 0.534468 3_3:-84070037 Msa0479200:three_prime_UTR
AGTGAAGGACGTACCAGTAC+AGG 0.541451 3_3:+84071606 None:intergenic
CAAGAACATCAATAGAAGCT+AGG 0.543899 3_3:+84072046 None:intergenic
AACATACCCTAAACTCTCCC+TGG 0.543946 3_3:+84072783 None:intergenic
GGTGCATTTCCGACGGAAGA+GGG 0.544846 3_3:+84074270 None:intergenic
TTCACAATGTTATGTGCAAG+AGG 0.545519 3_3:+84070306 None:intergenic
TCCATACAGAACAAAGGAAG+TGG 0.545757 3_3:+84070048 None:intergenic
AGAACAACTCGATTCAAAAG+AGG 0.547577 3_3:-84074521 Msa0479200:five_prime_UTR
CTTCGCTCGATCGATCGATC+TGG 0.547685 3_3:-84074599 Msa0479200:five_prime_UTR
TTGCAGGGCACTGCAGCTGG+AGG 0.549732 3_3:-84070396 Msa0479200:intron
ACCATCTGGTCCAAGCCCCT+TGG 0.551441 3_3:-84074250 Msa0479200:CDS
GAAATCGAAGCTAGTTCTCA+TGG 0.554299 3_3:-84074220 Msa0479200:CDS
TAGTGACATACTATTTATGA+TGG 0.554440 3_3:+84072522 None:intergenic
CTGCATCCTGAAGGCAAGGA+TGG 0.559919 3_3:-84070336 Msa0479200:CDS
TCATAGCACCTGCAACAAAA+GGG 0.561260 3_3:+84072845 None:intergenic
TGCGTAGTGGGTTGATGTAT+AGG 0.567635 3_3:-84070025 Msa0479200:three_prime_UTR
ACATCAATAGAAGCTAGGTA+AGG 0.568775 3_3:+84072051 None:intergenic
ATGTTCAGCAGGATACTGAT+TGG 0.569395 3_3:+84074105 None:intergenic
TAGAATTGCAGTGGTTCTCA+AGG 0.573300 3_3:-84070193 Msa0479200:CDS
ACCGGTTTGCTGCATCCTGA+AGG 0.579599 3_3:-84070345 Msa0479200:CDS
AGTACTGGAAGAATAGGACC+AGG 0.581747 3_3:-84072801 Msa0479200:CDS
GAGCTGCAAACTTTCATGAA+AGG 0.583871 3_3:+84072233 None:intergenic
GAGAGTAAAATGTTGGACAG+AGG 0.584323 3_3:-84074061 Msa0479200:CDS
CACGAACTATCTCTTTCTGG+TGG 0.584552 3_3:-84074193 Msa0479200:CDS
AAGGATAACCATAGAAGCAA+TGG 0.585803 3_3:-84071640 Msa0479200:CDS
GTTGAGAAGAGGCTGACTAT+GGG 0.594669 3_3:-84070270 Msa0479200:CDS
GGCTGACTATGGGAAAGAAA+GGG 0.596427 3_3:-84070260 Msa0479200:CDS
ACCAGATGGTGCATTTCCGA+CGG 0.597524 3_3:+84074263 None:intergenic
TTTGCTGCATCCTGAAGGCA+AGG 0.599998 3_3:-84070340 Msa0479200:CDS
CAGATTCACCCCTCTTCCGT+CGG 0.601811 3_3:-84074279 Msa0479200:CDS
TGTTCTGTATGGATGCGTAG+TGG 0.606087 3_3:-84070038 Msa0479200:three_prime_UTR
TGGTGGATTCATGAAATGCG+AGG 0.616138 3_3:-84072901 Msa0479200:CDS
TGGCAAGTCATGTTGAGAAG+AGG 0.617321 3_3:-84070281 Msa0479200:CDS
CACTGCAGCTGGAGGCACTG+TGG 0.621939 3_3:-84070388 Msa0479200:CDS
GCGAGGGCATTATTTCAAAG+AGG 0.622892 3_3:-84072884 Msa0479200:CDS
CCATACAGAACAAAGGAAGT+GGG 0.624963 3_3:+84070049 None:intergenic
TGGAGGCACTGTGGAGATCG+TGG 0.626460 3_3:-84070379 Msa0479200:CDS
GTGCATTTCCGACGGAAGAG+GGG 0.627718 3_3:+84074271 None:intergenic
ATACTGCTGTAGCTGGAAAG+TGG 0.634836 3_3:-84072975 Msa0479200:CDS
TGTACATCTTGGAAATAGCA+AGG 0.635730 3_3:-84072641 Msa0479200:CDS
GGTGGATTCATGAAATGCGA+GGG 0.637828 3_3:-84072900 Msa0479200:CDS
TGTTAACAAAACCCTGACAG+TGG 0.644245 3_3:-84072076 Msa0479200:CDS
TAGGTAAGGAGCCACTGTCA+GGG 0.644824 3_3:+84072065 None:intergenic
AACTTTCATGAAAGGCACGA+AGG 0.649061 3_3:+84072241 None:intergenic
CAGTAAAGTTGTGATTACAA+TGG 0.655195 3_3:-84074448 Msa0479200:five_prime_UTR
TTAAATGCAGGTGTTTCACG+TGG 0.656172 3_3:-84072282 Msa0479200:intron
ATAAAACCTTCGGAAGAACG+AGG 0.660037 3_3:+84072923 None:intergenic
TATGTCACATAGAATTGCAG+TGG 0.663579 3_3:-84070202 Msa0479200:CDS
TACGCATCCATACAGAACAA+AGG 0.667502 3_3:+84070042 None:intergenic
TAAAACCTTCGGAAGAACGA+GGG 0.689246 3_3:+84072924 None:intergenic
TAGCACCTGCAACAAAAGGG+AGG 0.690112 3_3:+84072848 None:intergenic
TTCTCTTCATACCAGTCACG+GGG 0.693192 3_3:-84071675 Msa0479200:intron
GTACTGGAAGAATAGGACCA+GGG 0.700205 3_3:-84072800 Msa0479200:CDS
TCGATTTCATGAAATCCAAG+GGG 0.703979 3_3:+84074235 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTATACAATGAATTAT+AGG + chr3_3:84070746-84070765 None:intergenic 10.0%
!! TAATTCATTGTATAAATTAA+CGG - chr3_3:84070747-84070766 Msa0479200:intron 10.0%
!! AATATATTATTAAATGAATC+TGG + chr3_3:84071769-84071788 None:intergenic 10.0%
!!! TAAAGTATTATTTTAGTTTT+TGG - chr3_3:84072808-84072827 Msa0479200:CDS 10.0%
!!! AAAGTATTATTTTAGTTTTT+GGG - chr3_3:84072809-84072828 Msa0479200:CDS 10.0%
!! ATGAAACCAAAATAATAAAA+AGG + chr3_3:84073217-84073236 None:intergenic 15.0%
!! TTAGTAAAAAAATAGTTACA+CGG + chr3_3:84073412-84073431 None:intergenic 15.0%
!!! ACTATTTTTTTACTAATTTG+TGG - chr3_3:84073416-84073435 Msa0479200:intron 15.0%
!! AAAAATAATACTGTTAAAGT+TGG - chr3_3:84073768-84073787 Msa0479200:intron 15.0%
!!! ATATTTTCTTCTCAAAAAAA+GGG + chr3_3:84074634-84074653 None:intergenic 15.0%
!!! TAGTTATGTTTTTCCATATT+TGG - chr3_3:84070607-84070626 Msa0479200:intron 20.0%
!!! CATATTTGGAATTATGAATA+GGG - chr3_3:84070621-84070640 Msa0479200:intron 20.0%
!! TATAAATTAACGGTAGAATT+TGG - chr3_3:84070757-84070776 Msa0479200:intron 20.0%
!!! AACTTTTTTTTTCATCTGAT+TGG - chr3_3:84071453-84071472 Msa0479200:intron 20.0%
!!! CATTTTAATTCTACAAAATC+AGG + chr3_3:84071850-84071869 None:intergenic 20.0%
!!! TTTTGTTAACAAAATGAACA+CGG + chr3_3:84072440-84072459 None:intergenic 20.0%
!! TAACACGTATAGATATAAAA+GGG + chr3_3:84072977-84072996 None:intergenic 20.0%
!! TTAACACGTATAGATATAAA+AGG + chr3_3:84072978-84072997 None:intergenic 20.0%
!!! ATTTTTTAGATTTTTTCGAC+AGG + chr3_3:84073259-84073278 None:intergenic 20.0%
!! TAGTAAAAAAATAGTTACAC+GGG + chr3_3:84073411-84073430 None:intergenic 20.0%
!! ATGAAACTAATATTATTCTG+AGG - chr3_3:84073700-84073719 Msa0479200:intron 20.0%
!! GGAATCAATTTACAATTTAA+TGG + chr3_3:84074409-84074428 None:intergenic 20.0%
!!! TAAATTGATTCCAAAGAAAA+AGG - chr3_3:84074417-84074436 Msa0479200:five_prime_UTR 20.0%
!!! CATATTTTCTTCTCAAAAAA+AGG + chr3_3:84074635-84074654 None:intergenic 20.0%
!!! CGCATCATGTAATTTTTTTA+GGG + chr3_3:84070042-84070061 None:intergenic 25.0%
!!! TCGCATCATGTAATTTTTTT+AGG + chr3_3:84070043-84070062 None:intergenic 25.0%
! ATGAAAGCTAGTAACATTAA+CGG + chr3_3:84070138-84070157 None:intergenic 25.0%
! TGATCAGGTTATTTATAGTT+TGG - chr3_3:84070442-84070461 Msa0479200:intron 25.0%
! CAATAAAGATCAAAACGAAA+AGG + chr3_3:84070519-84070538 None:intergenic 25.0%
!!! GATCTTTATTGTTGTTTACT+TGG - chr3_3:84070528-84070547 Msa0479200:intron 25.0%
! CCTATTCATAATTCCAAATA+TGG + chr3_3:84070623-84070642 None:intergenic 25.0%
!! CCATATTTGGAATTATGAAT+AGG - chr3_3:84070620-84070639 Msa0479200:intron 25.0%
! TGTGAACTATGTTTATCAAA+TGG + chr3_3:84071296-84071315 None:intergenic 25.0%
! TAGTGACATACTATTTATGA+TGG + chr3_3:84072006-84072025 None:intergenic 25.0%
! AATGAATATTGAATGAGTAC+AGG + chr3_3:84072029-84072048 None:intergenic 25.0%
! AGGTACACACTATATTAAAT+TGG + chr3_3:84072165-84072184 None:intergenic 25.0%
!!! ATACATTACCAAGTTGATTA+TGG - chr3_3:84072531-84072550 Msa0479200:intron 25.0%
!! TCAAACTTTTGACATTATGA+TGG - chr3_3:84072577-84072596 Msa0479200:CDS 25.0%
!! TCATGCAATCTAAAGTTTAA+GGG + chr3_3:84072606-84072625 None:intergenic 25.0%
!! ATCATGCAATCTAAAGTTTA+AGG + chr3_3:84072607-84072626 None:intergenic 25.0%
!!! TGCAATATGTTTTGGAAATT+AGG + chr3_3:84072641-84072660 None:intergenic 25.0%
!! TGTCTGCCTTTTTATTATTT+TGG - chr3_3:84073208-84073227 Msa0479200:intron 25.0%
! ATCATTCAAAAAAGGCAATT+TGG + chr3_3:84073322-84073341 None:intergenic 25.0%
! CTGATGTTATCATTCAAAAA+AGG + chr3_3:84073330-84073349 None:intergenic 25.0%
! AAGGAAAATTAGTGAATTTG+AGG + chr3_3:84073551-84073570 None:intergenic 25.0%
! TTAAAACAACTAGGATAACA+TGG + chr3_3:84073604-84073623 None:intergenic 25.0%
! AACTTGTGTAACATTAATTG+AGG - chr3_3:84073829-84073848 Msa0479200:intron 25.0%
! TTACAAATAGATTCCGAAAT+TGG + chr3_3:84074047-84074066 None:intergenic 25.0%
! ACAATTAAATTAACCAGCTT+AGG - chr3_3:84074376-84074395 Msa0479200:CDS 25.0%
! AGAAAATATGTATTACCCAT+TGG - chr3_3:84074645-84074664 Msa0479200:five_prime_UTR 25.0%
! TTATTAAAAAAAGGGCCAAT+GGG + chr3_3:84074663-84074682 None:intergenic 25.0%
! TTTATTAAAAAAAGGGCCAA+TGG + chr3_3:84074664-84074683 None:intergenic 25.0%
CAGTAAAGTTGTGATTACAA+TGG - chr3_3:84070077-84070096 Msa0479200:three_prime_UTR 30.0%
TTCGATTTCATGAAATCCAA+GGG + chr3_3:84070294-84070313 None:intergenic 30.0%
!! ACCTTTACTTTTGATGGAAT+TGG - chr3_3:84070355-84070374 Msa0479200:CDS 30.0%
TAGTTTGGAGAGTAAAATGT+TGG - chr3_3:84070457-84070476 Msa0479200:intron 30.0%
ATTCAGTGTGTCTACAAATA+GGG - chr3_3:84070644-84070663 Msa0479200:intron 30.0%
AAATAGGGATTTGACTCAAA+TGG - chr3_3:84070659-84070678 Msa0479200:intron 30.0%
ACAATGGTGAAATCCAATAA+GGG + chr3_3:84070868-84070887 None:intergenic 30.0%
TACAATGGTGAAATCCAATA+AGG + chr3_3:84070869-84070888 None:intergenic 30.0%
!! ACCATTGTAGTGTTTTTATG+TGG - chr3_3:84070880-84070899 Msa0479200:intron 30.0%
TCCATAAACTTAAGCAATCA+TGG + chr3_3:84070909-84070928 None:intergenic 30.0%
ATGATTGCTTAAGTTTATGG+AGG - chr3_3:84070908-84070927 Msa0479200:intron 30.0%
TCATATATAGACACAGAAGA+GGG + chr3_3:84071144-84071163 None:intergenic 30.0%
ACGTCAAAAAGTTCATTAAG+TGG + chr3_3:84071211-84071230 None:intergenic 30.0%
TGATAAACATAGTTCACATG+TGG - chr3_3:84071298-84071317 Msa0479200:intron 30.0%
!! TGCTTAACTCGTATTTTTGT+GGG + chr3_3:84071334-84071353 None:intergenic 30.0%
!! TTGCTTAACTCGTATTTTTG+TGG + chr3_3:84071335-84071354 None:intergenic 30.0%
TGTAATCAGTTTGATTGAGT+TGG - chr3_3:84071358-84071377 Msa0479200:intron 30.0%
CTTAGAAGTTCAATAACACA+TGG + chr3_3:84071430-84071449 None:intergenic 30.0%
!! GGTAACTTTTTCCTTTAAGA+CGG + chr3_3:84071583-84071602 None:intergenic 30.0%
AGATGTACAACATAAGTTTC+AGG + chr3_3:84071873-84071892 None:intergenic 30.0%
GAAACTTATGTTGTACATCT+TGG - chr3_3:84071873-84071892 Msa0479200:intron 30.0%
! CATGATATTTTCATCCAATG+CGG - chr3_3:84072070-84072089 Msa0479200:CDS 30.0%
TGTAAAAAAGTGAACAGAAG+AGG + chr3_3:84072185-84072204 None:intergenic 30.0%
! TTTTGCTAGTATGTATTCTG+AGG - chr3_3:84072209-84072228 Msa0479200:CDS 30.0%
TGTTTCAGAGAAAAAGATTC+AGG - chr3_3:84072413-84072432 Msa0479200:intron 30.0%
ACAAATCGATATGAGAAGAA+AGG + chr3_3:84072705-84072724 None:intergenic 30.0%
!! ACAAAGTTTGCTAGTTTAGA+AGG - chr3_3:84072747-84072766 Msa0479200:intron 30.0%
!! CAAAGTTTGCTAGTTTAGAA+GGG - chr3_3:84072748-84072767 Msa0479200:intron 30.0%
ACAACTCAAATATCTAGTGA+AGG + chr3_3:84072937-84072956 None:intergenic 30.0%
ACGTATAGATATAAAAGGGA+AGG + chr3_3:84072973-84072992 None:intergenic 30.0%
GATAATGAGAAAATTGACAC+AGG + chr3_3:84073011-84073030 None:intergenic 30.0%
!! AGCATGTCTTTAAAACAACT+AGG + chr3_3:84073613-84073632 None:intergenic 30.0%
CAATCATGTTATCAAAGCAT+TGG + chr3_3:84073745-84073764 None:intergenic 30.0%
AGTTGCAACTAACAAATGAA+TGG + chr3_3:84073813-84073832 None:intergenic 30.0%
! GCTGACTTATAATCAATTCT+TGG - chr3_3:84073853-84073872 Msa0479200:intron 30.0%
! TTTCCGTTAAAAACTTTTGC+AGG - chr3_3:84074113-84074132 Msa0479200:CDS 30.0%
! TTCCGTTAAAAACTTTTGCA+GGG - chr3_3:84074114-84074133 Msa0479200:CDS 30.0%
TGCACATAACATTGTGAAAT+TGG - chr3_3:84074224-84074243 Msa0479200:CDS 30.0%
TTCCAAAGAAAAAGGAAGAA+TGG - chr3_3:84074425-84074444 Msa0479200:five_prime_UTR 30.0%
! AACCATTCTTCCTTTTTCTT+TGG + chr3_3:84074430-84074449 None:intergenic 30.0%
AAGAAAAAGGAAGAATGGTT+CGG - chr3_3:84074430-84074449 Msa0479200:five_prime_UTR 30.0%
!!! ACATGTTTTTTATCTTAGCG+AGG + chr3_3:84074543-84074562 None:intergenic 30.0%
AAGATAAAAAACATGTCCGA+AGG - chr3_3:84074547-84074566 Msa0479200:five_prime_UTR 30.0%
TAAAAAAAGCAGTGTACCTT+CGG + chr3_3:84074566-84074585 None:intergenic 30.0%
AGAACAACTCGATTCAAAAG+AGG - chr3_3:84070004-84070023 Msa0479200:three_prime_UTR 35.0%
TTGCATGAATCGGAATTGTT+CGG + chr3_3:84070195-84070214 None:intergenic 35.0%
TCGATTTCATGAAATCCAAG+GGG + chr3_3:84070293-84070312 None:intergenic 35.0%
CTTCGATTTCATGAAATCCA+AGG + chr3_3:84070295-84070314 None:intergenic 35.0%
GCCAATTCCATCAAAAGTAA+AGG + chr3_3:84070359-84070378 None:intergenic 35.0%
AGTGTTAAATTAATGCTGCG+TGG - chr3_3:84070563-84070582 Msa0479200:intron 35.0%
GATTCAGTGTGTCTACAAAT+AGG - chr3_3:84070643-84070662 Msa0479200:intron 35.0%
! TCATGGATTGTGCTCATTTA+AGG - chr3_3:84070710-84070729 Msa0479200:intron 35.0%
! TGATGTAAGAGAAGCTTTGA+CGG - chr3_3:84070806-84070825 Msa0479200:intron 35.0%
TTTAAGAAACCGTCCCTTAT+TGG - chr3_3:84070852-84070871 Msa0479200:intron 35.0%
GCCACATAAAAACACTACAA+TGG + chr3_3:84070884-84070903 None:intergenic 35.0%
GCCATGATTGCTTAAGTTTA+TGG - chr3_3:84070905-84070924 Msa0479200:intron 35.0%
CATATATAGACACAGAAGAG+GGG + chr3_3:84071143-84071162 None:intergenic 35.0%
CTCATATATAGACACAGAAG+AGG + chr3_3:84071145-84071164 None:intergenic 35.0%
! ACTTTTTGACGTTGCTCTAT+TGG - chr3_3:84071219-84071238 Msa0479200:intron 35.0%
TCTAGGCATTTCATACAGAT+TGG + chr3_3:84071393-84071412 None:intergenic 35.0%
ATTCTAAATACTGCTGTAGC+TGG - chr3_3:84071543-84071562 Msa0479200:intron 35.0%
TGAATCCACCATAAAACCTT+CGG + chr3_3:84071615-84071634 None:intergenic 35.0%
TGTACATCTTGGAAATAGCA+AGG - chr3_3:84071884-84071903 Msa0479200:intron 35.0%
TGGAAATAGCAAGGAACTTA+TGG - chr3_3:84071893-84071912 Msa0479200:intron 35.0%
AGAAGATAGTGTAGCAAAGA+GGG - chr3_3:84071923-84071942 Msa0479200:intron 35.0%
!! TAGTATGTATTCTGAGGTCT+AGG - chr3_3:84072215-84072234 Msa0479200:CDS 35.0%
!! AGTATGTATTCTGAGGTCTA+GGG - chr3_3:84072216-84072235 Msa0479200:CDS 35.0%
!!! GTCTAGGGTTTTTTAAATGC+AGG - chr3_3:84072231-84072250 Msa0479200:CDS 35.0%
ACAACTATAGCATGCAAAGA+TGG + chr3_3:84072342-84072361 None:intergenic 35.0%
TCTTTGCATGCTATAGTTGT+AGG - chr3_3:84072342-84072361 Msa0479200:intron 35.0%
CTTTGCATGCTATAGTTGTA+GGG - chr3_3:84072343-84072362 Msa0479200:intron 35.0%
TGCTCAGACAAAGTTTGAAA+TGG - chr3_3:84072377-84072396 Msa0479200:intron 35.0%
ACATCAATAGAAGCTAGGTA+AGG + chr3_3:84072477-84072496 None:intergenic 35.0%
CAAGAACATCAATAGAAGCT+AGG + chr3_3:84072482-84072501 None:intergenic 35.0%
TGTTCTTGTTCAGAATTCTC+AGG - chr3_3:84072494-84072513 Msa0479200:intron 35.0%
ATGGCAGAACTGAATCAATT+CGG + chr3_3:84072669-84072688 None:intergenic 35.0%
! TGTTTGACTTCCATGATGTA+TGG - chr3_3:84072722-84072741 Msa0479200:intron 35.0%
AACTTTGTCTCCATACATCA+TGG + chr3_3:84072735-84072754 None:intergenic 35.0%
TTTAGAAGGGACTTGAAGAT+AGG - chr3_3:84072761-84072780 Msa0479200:intron 35.0%
AAGGATAACCATAGAAGCAA+TGG - chr3_3:84072885-84072904 Msa0479200:CDS 35.0%
GTATCATGTGCATTTCCTTA+AGG + chr3_3:84073113-84073132 None:intergenic 35.0%
TAAGGAAACAACAACTGAGT+AGG + chr3_3:84073369-84073388 None:intergenic 35.0%
! TGTGGATTCAACTGAGTTTT+AGG - chr3_3:84073434-84073453 Msa0479200:intron 35.0%
TATCTTCATTTCTTCGCCAA+GGG + chr3_3:84073472-84073491 None:intergenic 35.0%
TTATCTTCATTTCTTCGCCA+AGG + chr3_3:84073473-84073492 None:intergenic 35.0%
ACAAAAGAACAGTGCAAATG+TGG + chr3_3:84073515-84073534 None:intergenic 35.0%
TAGGATAACATGGTAGAGAA+AGG + chr3_3:84073594-84073613 None:intergenic 35.0%
AATAACCAGCTGAACTAATG+AGG + chr3_3:84073895-84073914 None:intergenic 35.0%
!! TGTTTCTTGCTGTTTCAACT+TGG - chr3_3:84074016-84074035 Msa0479200:intron 35.0%
! TGCCCTGCAAAAGTTTTTAA+CGG + chr3_3:84074119-84074138 None:intergenic 35.0%
TTCACAATGTTATGTGCAAG+AGG + chr3_3:84074222-84074241 None:intergenic 35.0%
CTGCAATTCTATGTGACATA+TGG + chr3_3:84074323-84074342 None:intergenic 35.0%
TATGTCACATAGAATTGCAG+TGG - chr3_3:84074323-84074342 Msa0479200:CDS 35.0%
! TGGTTCTCAAGGAAGTTTTA+CGG - chr3_3:84074343-84074362 Msa0479200:CDS 35.0%
!! TAGCATTGGCGAAGAAAAGA+TGG - chr3_3:84070112-84070131 Msa0479200:three_prime_UTR 40.0%
!! CTTTGTGGTGTTGCATGAAT+CGG + chr3_3:84070205-84070224 None:intergenic 40.0%
! GAAATCGAAGCTAGTTCTCA+TGG - chr3_3:84070305-84070324 Msa0479200:CDS 40.0%
!! TGGTGGACCTTTACTTTTGA+TGG - chr3_3:84070349-84070368 Msa0479200:CDS 40.0%
! GAATTGGCGTTTTTGTTGAG+AGG - chr3_3:84070371-84070390 Msa0479200:CDS 40.0%
!! GTGTTGGTTCTGATGTTGTT+TGG - chr3_3:84070393-84070412 Msa0479200:CDS 40.0%
ATGTTCAGCAGGATACTGAT+TGG + chr3_3:84070423-84070442 None:intergenic 40.0%
ATAACCTGATCATGTTCAGC+AGG + chr3_3:84070434-84070453 None:intergenic 40.0%
GAGAGTAAAATGTTGGACAG+AGG - chr3_3:84070464-84070483 Msa0479200:intron 40.0%
!! CTGCGTGGAAATGTTTTAAG+AGG - chr3_3:84070578-84070597 Msa0479200:intron 40.0%
TCCACATGTGTAGCAAATCA+TGG - chr3_3:84070693-84070712 Msa0479200:intron 40.0%
!! TCCATGATTTGCTACACATG+TGG + chr3_3:84070697-84070716 None:intergenic 40.0%
! TAACGGTAGAATTTGGTGAG+AGG - chr3_3:84070764-84070783 Msa0479200:intron 40.0%
! GATGTAAGAGAAGCTTTGAC+GGG - chr3_3:84070807-84070826 Msa0479200:intron 40.0%
TGGTGAAATCCAATAAGGGA+CGG + chr3_3:84070864-84070883 None:intergenic 40.0%
!! GCTCTATTGGAGTTGATAGT+TGG - chr3_3:84071232-84071251 Msa0479200:intron 40.0%
AACATAGTTCACATGTGGCA+TGG - chr3_3:84071303-84071322 Msa0479200:intron 40.0%
AACACATGGATATGAACTGC+AGG + chr3_3:84071416-84071435 None:intergenic 40.0%
!! TCATCTGATTGGCTTCTGAT+AGG - chr3_3:84071464-84071483 Msa0479200:intron 40.0%
TACAGCTCTTAAAGCTGATC+TGG - chr3_3:84071518-84071537 Msa0479200:intron 40.0%
TAAAACCTTCGGAAGAACGA+GGG + chr3_3:84071604-84071623 None:intergenic 40.0%
ATAAAACCTTCGGAAGAACG+AGG + chr3_3:84071605-84071624 None:intergenic 40.0%
! TCGTTCTTCCGAAGGTTTTA+TGG - chr3_3:84071604-84071623 Msa0479200:intron 40.0%
!! TTCTTCCGAAGGTTTTATGG+TGG - chr3_3:84071607-84071626 Msa0479200:intron 40.0%
TCATAGCACCTGCAACAAAA+GGG + chr3_3:84071683-84071702 None:intergenic 40.0%
ATCATAGCACCTGCAACAAA+AGG + chr3_3:84071684-84071703 None:intergenic 40.0%
CACATATAACTGCAGAGTAC+TGG - chr3_3:84071709-84071728 Msa0479200:intron 40.0%
TACAGTCACACAGAACACAT+AGG + chr3_3:84071795-84071814 None:intergenic 40.0%
CAGAAGATAGTGTAGCAAAG+AGG - chr3_3:84071922-84071941 Msa0479200:intron 40.0%
CAAGGCAAATTGACATCGTT+TGG - chr3_3:84072108-84072127 Msa0479200:CDS 40.0%
TTAAATGCAGGTGTTTCACG+TGG - chr3_3:84072243-84072262 Msa0479200:CDS 40.0%
! AACTTTCATGAAAGGCACGA+AGG + chr3_3:84072287-84072306 None:intergenic 40.0%
GAGCTGCAAACTTTCATGAA+AGG + chr3_3:84072295-84072314 None:intergenic 40.0%
TGAAAGTTTGCAGCTCATTC+AGG - chr3_3:84072299-84072318 Msa0479200:intron 40.0%
TGTTAACAAAACCCTGACAG+TGG - chr3_3:84072449-84072468 Msa0479200:intron 40.0%
GCTCTGTTCCATAATCAACT+TGG + chr3_3:84072542-84072561 None:intergenic 40.0%
TTCAGTTCTGCCATCTTCAT+TGG - chr3_3:84072675-84072694 Msa0479200:intron 40.0%
! TGGTATGAAGAGAAGCACAT+TGG + chr3_3:84072844-84072863 None:intergenic 40.0%
ACGAAATGCCATTGCTTCTA+TGG + chr3_3:84072896-84072915 None:intergenic 40.0%
TGGCTAGAAATCACACCTTA+AGG - chr3_3:84073095-84073114 Msa0479200:intron 40.0%
!! TTTTTCGACAGGACTGATAG+TGG + chr3_3:84073248-84073267 None:intergenic 40.0%
GTTTCCTTATGCATGCCAAT+TGG - chr3_3:84073380-84073399 Msa0479200:intron 40.0%
! TAGGCACTTGAATTTTCCCT+TGG - chr3_3:84073453-84073472 Msa0479200:intron 40.0%
GATAACATGGTAGAGAAAGG+TGG + chr3_3:84073591-84073610 None:intergenic 40.0%
AACGTAGGAATACCGAATCA+GGG - chr3_3:84073639-84073658 Msa0479200:intron 40.0%
CAACTTGGCTACTCCAATTT+CGG - chr3_3:84074031-84074050 Msa0479200:intron 40.0%
TAGAATTGCAGTGGTTCTCA+AGG - chr3_3:84074332-84074351 Msa0479200:CDS 40.0%
! TCTCAAGGAAGTTTTACGGA+AGG - chr3_3:84074347-84074366 Msa0479200:CDS 40.0%
TAATGGTGAAGTTCCTAAGC+TGG + chr3_3:84074392-84074411 None:intergenic 40.0%
CCATACAGAACAAAGGAAGT+GGG + chr3_3:84074479-84074498 None:intergenic 40.0%
TCCATACAGAACAAAGGAAG+TGG + chr3_3:84074480-84074499 None:intergenic 40.0%
TACGCATCCATACAGAACAA+AGG + chr3_3:84074486-84074505 None:intergenic 40.0%
! GTGTACATTTTCACTGGTAC+AGG + chr3_3:84074610-84074629 None:intergenic 40.0%
!! AAGGGAGTGTACATTTTCAC+TGG + chr3_3:84074616-84074635 None:intergenic 40.0%
TTGTGCTTCGAAGGTCTTTG+TGG + chr3_3:84070220-84070239 None:intergenic 45.0%
CTGATTCTGTTGTGCTTCGA+AGG + chr3_3:84070229-84070248 None:intergenic 45.0%
TTCATGAAATCCAAGGGGCT+TGG + chr3_3:84070288-84070307 None:intergenic 45.0%
TCGCACGAACTATCTCTTTC+TGG - chr3_3:84070329-84070348 Msa0479200:CDS 45.0%
CACGAACTATCTCTTTCTGG+TGG - chr3_3:84070332-84070351 Msa0479200:CDS 45.0%
!! GCGTTTTTGTTGAGAGGTGT+TGG - chr3_3:84070377-84070396 Msa0479200:CDS 45.0%
GTATCCTGCTGAACATGATC+AGG - chr3_3:84070427-84070446 Msa0479200:intron 45.0%
AATGTTGGACAGAGGAGTTC+AGG - chr3_3:84070472-84070491 Msa0479200:intron 45.0%
TGGATATGAACTGCAGGTCT+AGG + chr3_3:84071410-84071429 None:intergenic 45.0%
! ACAGCCTTTTCACCTTTTGC+AGG + chr3_3:84071495-84071514 None:intergenic 45.0%
ATACTGCTGTAGCTGGAAAG+TGG - chr3_3:84071550-84071569 Msa0479200:intron 45.0%
!! TGGTGGATTCATGAAATGCG+AGG - chr3_3:84071624-84071643 Msa0479200:CDS 45.0%
! GGTGGATTCATGAAATGCGA+GGG - chr3_3:84071625-84071644 Msa0479200:CDS 45.0%
!! GCGAGGGCATTATTTCAAAG+AGG - chr3_3:84071641-84071660 Msa0479200:CDS 45.0%
!! CTGCAGAGTACTGGAAGAAT+AGG - chr3_3:84071718-84071737 Msa0479200:intron 45.0%
! AGTACTGGAAGAATAGGACC+AGG - chr3_3:84071724-84071743 Msa0479200:intron 45.0%
GTACTGGAAGAATAGGACCA+GGG - chr3_3:84071725-84071744 Msa0479200:intron 45.0%
AATAGGACCAGGGAGAGTTT+AGG - chr3_3:84071735-84071754 Msa0479200:intron 45.0%
ATAGGACCAGGGAGAGTTTA+GGG - chr3_3:84071736-84071755 Msa0479200:intron 45.0%
AACATACCCTAAACTCTCCC+TGG + chr3_3:84071745-84071764 None:intergenic 45.0%
GGTTCTTCGTGAGCATGTTA+GGG - chr3_3:84071944-84071963 Msa0479200:intron 45.0%
GAGCATGTTAGGGAATCTCT+TGG - chr3_3:84071954-84071973 Msa0479200:intron 45.0%
ATCCAATGCGGTACATGACA+TGG - chr3_3:84072082-84072101 Msa0479200:CDS 45.0%
AACCATGTCATGTACCGCAT+TGG + chr3_3:84072087-84072106 None:intergenic 45.0%
CAGGTGTTTCACGTGGTAAA+GGG - chr3_3:84072250-84072269 Msa0479200:CDS 45.0%
! CGGTGGTGTGCAATATGTTT+TGG + chr3_3:84072649-84072668 None:intergenic 45.0%
GCAGAACTGAATCAATTCGG+TGG + chr3_3:84072666-84072685 None:intergenic 45.0%
GTTCTGCCATCTTCATTGGT+TGG - chr3_3:84072679-84072698 Msa0479200:intron 45.0%
GAAAGGCCAACCAATGAAGA+TGG + chr3_3:84072688-84072707 None:intergenic 45.0%
GCTTCTCTTCATACCAGTCA+CGG - chr3_3:84072848-84072867 Msa0479200:CDS 45.0%
CTTCTCTTCATACCAGTCAC+GGG - chr3_3:84072849-84072868 Msa0479200:CDS 45.0%
TTCTCTTCATACCAGTCACG+GGG - chr3_3:84072850-84072869 Msa0479200:CDS 45.0%
AAAGGGAAGGTCATATCGAC+AGG + chr3_3:84072960-84072979 None:intergenic 45.0%
! CTTTTGGTCAAGTAGCCTAG+TGG - chr3_3:84073075-84073094 Msa0479200:intron 45.0%
!! AGGTGTGATTTCTAGCCACT+AGG + chr3_3:84073093-84073112 None:intergenic 45.0%
GTAGCCAATTGGCATGCATA+AGG + chr3_3:84073387-84073406 None:intergenic 45.0%
ACATGGTAGAGAAAGGTGGA+GGG + chr3_3:84073587-84073606 None:intergenic 45.0%
AACATGGTAGAGAAAGGTGG+AGG + chr3_3:84073588-84073607 None:intergenic 45.0%
ATTCGGTATTCCTACGTTCG+TGG + chr3_3:84073637-84073656 None:intergenic 45.0%
GAACGTAGGAATACCGAATC+AGG - chr3_3:84073638-84073657 Msa0479200:intron 45.0%
ACGTAGGAATACCGAATCAG+GGG - chr3_3:84073640-84073659 Msa0479200:intron 45.0%
CATACATGTCTCCCCTGATT+CGG + chr3_3:84073654-84073673 None:intergenic 45.0%
CAGGGGAGACATGTATGTTT+CGG - chr3_3:84073657-84073676 Msa0479200:intron 45.0%
AGTTGGCTGTCAGATGATAC+AGG - chr3_3:84073785-84073804 Msa0479200:intron 45.0%
AGAGTCCTCATTAGTTCAGC+TGG - chr3_3:84073887-84073906 Msa0479200:intron 45.0%
ACTGTGGAGATCGTGGTTAA+TGG - chr3_3:84074153-84074172 Msa0479200:CDS 45.0%
CTGTGGAGATCGTGGTTAAT+GGG - chr3_3:84074154-84074173 Msa0479200:CDS 45.0%
ATCGTGGTTAATGGGACAAC+CGG - chr3_3:84074162-84074181 Msa0479200:CDS 45.0%
TGGCAAGTCATGTTGAGAAG+AGG - chr3_3:84074244-84074263 Msa0479200:CDS 45.0%
TGTTGAGAAGAGGCTGACTA+TGG - chr3_3:84074254-84074273 Msa0479200:CDS 45.0%
GTTGAGAAGAGGCTGACTAT+GGG - chr3_3:84074255-84074274 Msa0479200:CDS 45.0%
AGGCTGACTATGGGAAAGAA+AGG - chr3_3:84074264-84074283 Msa0479200:CDS 45.0%
GGCTGACTATGGGAAAGAAA+GGG - chr3_3:84074265-84074284 Msa0479200:CDS 45.0%
GGTATGAGAGAGTGAAAGAG+AGG - chr3_3:84074286-84074305 Msa0479200:CDS 45.0%
GAGAGTGAAAGAGAGGTTTC+TGG - chr3_3:84074293-84074312 Msa0479200:CDS 45.0%
! AGGAAGTTTTACGGAAGGCA+AGG - chr3_3:84074352-84074371 Msa0479200:CDS 45.0%
CCCACTTCCTTTGTTCTGTA+TGG - chr3_3:84074476-84074495 Msa0479200:five_prime_UTR 45.0%
TGTTCTGTATGGATGCGTAG+TGG - chr3_3:84074487-84074506 Msa0479200:five_prime_UTR 45.0%
GTTCTGTATGGATGCGTAGT+GGG - chr3_3:84074488-84074507 Msa0479200:five_prime_UTR 45.0%
!! TGCGTAGTGGGTTGATGTAT+AGG - chr3_3:84074500-84074519 Msa0479200:five_prime_UTR 45.0%
!!! TTATTTATTATATATTCTTT+TGG - chr3_3:84073059-84073078 Msa0479200:intron 5.0%
! GGCGAAGCATTCAGTAGCAT+TGG - chr3_3:84070098-84070117 Msa0479200:three_prime_UTR 50.0%
ACCAGATGGTGCATTTCCGA+CGG + chr3_3:84070265-84070284 None:intergenic 50.0%
! GGTAGAATTTGGTGAGAGGC+TGG - chr3_3:84070768-84070787 Msa0479200:intron 50.0%
! AGAGGTATAGTCGCAGAGGT+AGG + chr3_3:84071037-84071056 None:intergenic 50.0%
TAGACACAGAAGAGGGGCAA+GGG + chr3_3:84071137-84071156 None:intergenic 50.0%
ATAGACACAGAAGAGGGGCA+AGG + chr3_3:84071138-84071157 None:intergenic 50.0%
TGATAGGTCCTGCCTGCAAA+AGG - chr3_3:84071480-84071499 Msa0479200:intron 50.0%
! CCTTTTCACCTTTTGCAGGC+AGG + chr3_3:84071491-84071510 None:intergenic 50.0%
CCTGCCTGCAAAAGGTGAAA+AGG - chr3_3:84071488-84071507 Msa0479200:intron 50.0%
AGTTACCCTCGTTCTTCCGA+AGG - chr3_3:84071596-84071615 Msa0479200:intron 50.0%
! AAGCACCTCCCTTTTGTTGC+AGG - chr3_3:84071672-84071691 Msa0479200:intron 50.0%
TAGCACCTGCAACAAAAGGG+AGG + chr3_3:84071680-84071699 None:intergenic 50.0%
GGGTTCTTCGTGAGCATGTT+AGG - chr3_3:84071943-84071962 Msa0479200:intron 50.0%
CGGTACATGACATGGTTGCA+AGG - chr3_3:84072090-84072109 Msa0479200:CDS 50.0%
GCAGGTGTTTCACGTGGTAA+AGG - chr3_3:84072249-84072268 Msa0479200:CDS 50.0%
TAGGTAAGGAGCCACTGTCA+GGG + chr3_3:84072463-84072482 None:intergenic 50.0%
CAAAACATTCTCCCCGTGAC+TGG + chr3_3:84072864-84072883 None:intergenic 50.0%
! CAGTCACGGGGAGAATGTTT+TGG - chr3_3:84072862-84072881 Msa0479200:CDS 50.0%
!! CACGGGGAGAATGTTTTGGA+AGG - chr3_3:84072866-84072885 Msa0479200:CDS 50.0%
AGTGAAGGACGTACCAGTAC+AGG + chr3_3:84072922-84072941 None:intergenic 50.0%
GTTACACGGGTGTAGCCAAT+TGG + chr3_3:84073398-84073417 None:intergenic 50.0%
AGGTGGAGGGTTGAGCAAAT+GGG + chr3_3:84073574-84073593 None:intergenic 50.0%
AAGGTGGAGGGTTGAGCAAA+TGG + chr3_3:84073575-84073594 None:intergenic 50.0%
AGACATGCTTCCACGAACGT+AGG - chr3_3:84073624-84073643 Msa0479200:intron 50.0%
TTTGCTGCATCCTGAAGGCA+AGG - chr3_3:84074185-84074204 Msa0479200:CDS 50.0%
CTTCGCTCGATCGATCGATC+TGG - chr3_3:84069926-84069945 Msa0479200:three_prime_UTR 55.0%
CAGATTCACCCCTCTTCCGT+CGG - chr3_3:84070246-84070265 Msa0479200:CDS 55.0%
GTGCATTTCCGACGGAAGAG+GGG + chr3_3:84070257-84070276 None:intergenic 55.0%
GGTGCATTTCCGACGGAAGA+GGG + chr3_3:84070258-84070277 None:intergenic 55.0%
TGGTGCATTTCCGACGGAAG+AGG + chr3_3:84070259-84070278 None:intergenic 55.0%
TCCGTCGGAAATGCACCATC+TGG - chr3_3:84070261-84070280 Msa0479200:CDS 55.0%
! TCGCAGAGGTATAGTCGCAG+AGG + chr3_3:84071041-84071060 None:intergenic 55.0%
CAGTTGCTCTGTAGTCGCAG+AGG + chr3_3:84071055-84071074 None:intergenic 55.0%
TGCTGTAGCTGGAAAGTGGC+TGG - chr3_3:84071554-84071573 Msa0479200:intron 55.0%
GTGGCTGGATGCCGTCTTAA+AGG - chr3_3:84071569-84071588 Msa0479200:intron 55.0%
CTAGGTAAGGAGCCACTGTC+AGG + chr3_3:84072464-84072483 None:intergenic 55.0%
GGCATTTCGTCTGCCTGTAC+TGG - chr3_3:84072906-84072925 Msa0479200:CDS 55.0%
GGAGGGTTGAGCAAATGGGA+AGG + chr3_3:84073570-84073589 None:intergenic 55.0%
!! ACCGGTTTGCTGCATCCTGA+AGG - chr3_3:84074180-84074199 Msa0479200:CDS 55.0%
GCCTTCAGGATGCAGCAAAC+CGG + chr3_3:84074184-84074203 None:intergenic 55.0%
CTGCATCCTGAAGGCAAGGA+TGG - chr3_3:84074189-84074208 Msa0479200:CDS 55.0%
GTCACACCATCCTTGCCTTC+AGG + chr3_3:84074198-84074217 None:intergenic 55.0%
ACCATCTGGTCCAAGCCCCT+TGG - chr3_3:84070275-84070294 Msa0479200:CDS 60.0%
TCCAAGGGGCTTGGACCAGA+TGG + chr3_3:84070279-84070298 None:intergenic 60.0%
GTCGCAGAGGTAGGCACAAG+CGG + chr3_3:84071028-84071047 None:intergenic 60.0%
ACAGAAGAGGGGCAAGGGAC+GGG + chr3_3:84071132-84071151 None:intergenic 60.0%
CACAGAAGAGGGGCAAGGGA+CGG + chr3_3:84071133-84071152 None:intergenic 60.0%
!!! CTTTTGCAGGGCACTGCAGC+TGG - chr3_3:84074126-84074145 Msa0479200:CDS 60.0%
!! TGGAGGCACTGTGGAGATCG+TGG - chr3_3:84074146-84074165 Msa0479200:CDS 60.0%
AGAAGAGGGGCAAGGGACGG+GGG + chr3_3:84071130-84071149 None:intergenic 65.0%
CAGAAGAGGGGCAAGGGACG+GGG + chr3_3:84071131-84071150 None:intergenic 65.0%
!! TTGCAGGGCACTGCAGCTGG+AGG - chr3_3:84074129-84074148 Msa0479200:CDS 65.0%
!! CACTGCAGCTGGAGGCACTG+TGG - chr3_3:84074137-84074156 Msa0479200:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 84069858 84074689 84069858 ID=Msa0479200;Name=Msa0479200
chr3_3 mRNA 84069858 84074689 84069858 ID=Msa0479200-mRNA-1;Parent=Msa0479200;Name=Msa0479200-mRNA-1;_AED=0.21;_eAED=0.21;_QI=273|1|1|1|1|1|6|306|454
chr3_3 exon 84069858 84070412 84069858 ID=Msa0479200-mRNA-1:exon:23834;Parent=Msa0479200-mRNA-1
chr3_3 exon 84071620 84071682 84071620 ID=Msa0479200-mRNA-1:exon:23833;Parent=Msa0479200-mRNA-1
chr3_3 exon 84072032 84072294 84072032 ID=Msa0479200-mRNA-1:exon:23832;Parent=Msa0479200-mRNA-1
chr3_3 exon 84072533 84072687 84072533 ID=Msa0479200-mRNA-1:exon:23831;Parent=Msa0479200-mRNA-1
chr3_3 exon 84072790 84073061 84072790 ID=Msa0479200-mRNA-1:exon:23830;Parent=Msa0479200-mRNA-1
chr3_3 exon 84074054 84074689 84074054 ID=Msa0479200-mRNA-1:exon:23829;Parent=Msa0479200-mRNA-1
chr3_3 five_prime_UTR 84074417 84074689 84074417 ID=Msa0479200-mRNA-1:five_prime_utr;Parent=Msa0479200-mRNA-1
chr3_3 CDS 84074054 84074416 84074054 ID=Msa0479200-mRNA-1:cds;Parent=Msa0479200-mRNA-1
chr3_3 CDS 84072790 84073061 84072790 ID=Msa0479200-mRNA-1:cds;Parent=Msa0479200-mRNA-1
chr3_3 CDS 84072533 84072687 84072533 ID=Msa0479200-mRNA-1:cds;Parent=Msa0479200-mRNA-1
chr3_3 CDS 84072032 84072294 84072032 ID=Msa0479200-mRNA-1:cds;Parent=Msa0479200-mRNA-1
chr3_3 CDS 84071620 84071682 84071620 ID=Msa0479200-mRNA-1:cds;Parent=Msa0479200-mRNA-1
chr3_3 CDS 84070164 84070412 84070164 ID=Msa0479200-mRNA-1:cds;Parent=Msa0479200-mRNA-1
chr3_3 three_prime_UTR 84069858 84070163 84069858 ID=Msa0479200-mRNA-1:three_prime_utr;Parent=Msa0479200-mRNA-1
Gene Sequence

>Msa0479200

ATGGCCGTTAATGTTACTAGCTTTCATATCAATTTCAACAGTGATGATTCTTTTCATGAGACCGAACAATTCCGATTCATGCAACACCACAAAGACCTTCGAAGCACAACAGAATCAGATTCACCCCTCTTCCGTCGGAAATGCACCATCTGGTCCAAGCCCCTTGGATTTCATGAAATCGAAGCTAGTTCTCATGGTTCGCACGAACTATCTCTTTCTGGTGGACCTTTACTTTTGATGGAATTGGCGTTTTTGTTGAGAGGTGTTGGTTCTGATGTTGTTTGGATTACCAATCAGTATCCTGCTGAACATGATCAGGTTATTTATAGTTTGGAGAGTAAAATGTTGGACAGAGGAGTTCAGGTCCTGCCTGCAAAAGGTGAAAAGGCTGTAGATACAGCTCTTAAAGCTGATCTGGTCATTCTAAATACTGCTGTAGCTGGAAAGTGGCTGGATGCCGTCTTAAAGGAAAAAGTTACCCTCGTTCTTCCGAAGGTTTTATGGTGGATTCATGAAATGCGAGGGCATTATTTCAAAGAGGCATATGTCAAGCACCTCCCTTTTGTTGCAGGTGCTATGATTGATTCACATATAACTGCAGAGTACTGGAAGAATAGGACCAGGGAGAGTTTAGGAATTAAAATGCCTGAAACTTATGTTGTACATCTTGGAAATAGCAAGGAACTTATGGAAGTTGCAGAAGATAGTGTAGCAAAGAGGGTTCTTCGTGAGCATGTTAGGGAATCTCTTGGAGTAAGAAATGATGATCTACTTTTTGCCATCATAAATAGTGTTTCACGTGGTAAAGGGCAAAATCTATTCCTTCGTGCCTTTCATGAAAGTTTGCAGCTCATTCAGGAGAAGAAACTCAAGTTGCCATCTTTGCATGCTATAGTTGTAGGGAGTGATATGAATGCTCAGACAAAGTTTGAAATGGAACTGCGCGATTTTGTTTCAGAGAAAAAGATTCAGGACCGTGTTCATTTTGTTAACAAAACCCTGACAGTGGCTCCTTACCTAGCTTCTATTGATGTTCTTGTTCAGAATTCTCAGTCACGGGGAGAATGTTTTGGAAGGATAACCATAGAAGCAATGGCATTTCGTCTGCCTGTACTGGGCACTGCAGCTGGAGGCACTGTGGAGATCGTGGTTAATGGGACAACCGGTTTGCTGCATCCTGAAGGCAAGGATGGTGTGACACCTCTTGCACATAACATTGTGAAATTGGCAAGTCATGTTGAGAAGAGGCTGACTATGGGAAAGAAAGGGTATGAGAGAGTGAAAGAGAGGTTTCTGGAGCACCATATGTCACATAGAATTGCAGTGGTTCTCAAGGAAGTTTTACGGAAGGCAAGGCACAATTAA

Protein sequence

>Msa0479200

MAVNVTSFHINFNSDDSFHETEQFRFMQHHKDLRSTTESDSPLFRRKCTIWSKPLGFHEIEASSHGSHELSLSGGPLLLMELAFLLRGVGSDVVWITNQYPAEHDQVIYSLESKMLDRGVQVLPAKGEKAVDTALKADLVILNTAVAGKWLDAVLKEKVTLVLPKVLWWIHEMRGHYFKEAYVKHLPFVAGAMIDSHITAEYWKNRTRESLGIKMPETYVVHLGNSKELMEVAEDSVAKRVLREHVRESLGVRNDDLLFAIINSVSRGKGQNLFLRAFHESLQLIQEKKLKLPSLHAIVVGSDMNAQTKFEMELRDFVSEKKIQDRVHFVNKTLTVAPYLASIDVLVQNSQSRGECFGRITIEAMAFRLPVLGTAAGGTVEIVVNGTTGLLHPEGKDGVTPLAHNIVKLASHVEKRLTMGKKGYERVKERFLEHHMSHRIAVVLKEVLRKARHN*