Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706940 | RHN43535.1 | 89.100 | 211 | 2 | 2 | 26 | 234 | 125 | 316 | 1.09e-119 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706940 | sp|O48726|RPN13_ARATH | 54.976 | 211 | 59 | 5 | 26 | 233 | 123 | 300 | 2.06e-58 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706940 | A0A396GXI2 | 89.100 | 211 | 2 | 2 | 26 | 234 | 125 | 316 | 5.20e-120 | 353 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0706940 | 0.801893 | 7.261415e-49 | -8.615850e-47 |
| Msa0602870 | Msa0706940 | 0.803304 | 3.715523e-49 | -8.615850e-47 |
| Msa0643890 | Msa0706940 | 0.801756 | 7.746993e-49 | -8.615850e-47 |
| Msa0706940 | Msa1082500 | 0.805657 | 1.200758e-49 | -8.615850e-47 |
| Msa0706940 | Msa1172670 | 0.811878 | 5.616543e-51 | -8.615850e-47 |
| Msa0706940 | Msa1294480 | 0.804091 | 2.551555e-49 | -8.615850e-47 |
| Msa0706940 | Msa1336710 | 0.811202 | 7.877721e-51 | -8.615850e-47 |
| Msa0706940 | Msa1452240 | 0.807504 | 4.893698e-50 | -8.615850e-47 |
| Msa0157290 | Msa0706940 | 0.801717 | 7.890942e-49 | -8.615850e-47 |
| Msa0523460 | Msa0706940 | 0.828555 | 8.421558e-55 | -8.615850e-47 |
| Msa0551890 | Msa0706940 | 0.802289 | 6.019486e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706940 | MtrunA17_Chr8g0388971 | 89.100 | 211 | 2 | 2 | 26 | 234 | 125 | 316 | 1.00e-123 | 353 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706940 | AT2G26590.2 | 54.976 | 211 | 59 | 5 | 26 | 233 | 123 | 300 | 2.09e-59 | 189 |
| Msa0706940 | AT2G26590.3 | 54.976 | 211 | 59 | 5 | 26 | 233 | 123 | 300 | 2.09e-59 | 189 |
| Msa0706940 | AT2G26590.1 | 54.976 | 211 | 59 | 5 | 26 | 233 | 123 | 300 | 2.09e-59 | 189 |
| Msa0706940 | AT2G26590.4 | 54.067 | 209 | 60 | 5 | 26 | 233 | 123 | 296 | 1.59e-57 | 184 |
Find 58 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCTGGTCCAGTTAAAT+TGG | 0.244685 | 4_4:-80156630 | Msa0706940:CDS |
| TAACATTACCTCTGGTAAAT+AGG | 0.276133 | 4_4:+80156079 | None:intergenic |
| AAACTAGCTTGTAAAGTAAA+TGG | 0.296241 | 4_4:+80155087 | None:intergenic |
| CAGATAGATTTGTCCCAGTT+TGG | 0.317934 | 4_4:-80155813 | Msa0706940:CDS |
| AGCGTGTTACTCTTCACTTC+TGG | 0.333307 | 4_4:+80156984 | None:intergenic |
| TACTTGGATCAATTCCAAAC+TGG | 0.345350 | 4_4:+80155799 | None:intergenic |
| TGGAGATCTGCCAATTTAAC+TGG | 0.349597 | 4_4:+80156620 | None:intergenic |
| ACTAGCGATGTAACATCTTC+TGG | 0.352930 | 4_4:-80156644 | Msa0706940:CDS |
| ATTTCATTTCAGAAGATATT+CGG | 0.358560 | 4_4:-80155876 | Msa0706940:intron |
| GGCTACTTGGATTCATCCAT+TGG | 0.381548 | 4_4:+80155238 | None:intergenic |
| TGATCTGATATTGCCATTGA+TGG | 0.395309 | 4_4:-80156132 | Msa0706940:CDS |
| GGAATCTAGGCAAGATGATC+AGG | 0.427826 | 4_4:-80155284 | Msa0706940:CDS |
| TCTCCAAGTCTGAGGAATCT+AGG | 0.438245 | 4_4:-80155297 | Msa0706940:CDS |
| AAGTAGCCTGCCAGGCTACT+TGG | 0.438982 | 4_4:+80155225 | None:intergenic |
| GTTGCATCCACACCAAAGTT+CGG | 0.439990 | 4_4:+80156665 | None:intergenic |
| CAATGTTGCTCAATATTCTC+TGG | 0.443937 | 4_4:+80156600 | None:intergenic |
| TTGCATCCACACCAAAGTTC+GGG | 0.455855 | 4_4:+80156666 | None:intergenic |
| TCGCTGCAGGTACTTCGAAC+AGG | 0.457627 | 4_4:-80155837 | Msa0706940:intron |
| GCTACTTGGATTCATCCATT+GGG | 0.458064 | 4_4:+80155239 | None:intergenic |
| TTCTATAGATACAAGAAACT+TGG | 0.464123 | 4_4:-80155193 | Msa0706940:three_prime_UTR |
| GCCAAGTGATTACCTTCGTC+AGG | 0.468536 | 4_4:+80156465 | None:intergenic |
| ATCAATGGCAATATCAGATC+AGG | 0.469632 | 4_4:+80156134 | None:intergenic |
| TTGGTCTCCAGAAGATATAT+TGG | 0.495383 | 4_4:-80155984 | Msa0706940:CDS |
| AACAACTCCAATATATCTTC+TGG | 0.501293 | 4_4:+80155977 | None:intergenic |
| AATGGTAACGTCTCCATCAA+TGG | 0.501612 | 4_4:+80156119 | None:intergenic |
| ATTCTATGATGTAGGGTACT+TGG | 0.504079 | 4_4:-80156003 | Msa0706940:intron |
| TTGCCTAGATTCCTCAGACT+TGG | 0.504515 | 4_4:+80155294 | None:intergenic |
| GCTTGAAGTTTCTGAAGATA+CGG | 0.509208 | 4_4:-80156901 | Msa0706940:CDS |
| GTTGGAAAGAGCTGCAAACT+TGG | 0.509813 | 4_4:-80156693 | Msa0706940:intron |
| AACTTGGTTGTCCCGAACTT+TGG | 0.511711 | 4_4:-80156677 | Msa0706940:CDS |
| TTCTCACTAACAGAGCTCCT+TGG | 0.514456 | 4_4:-80156951 | Msa0706940:CDS |
| CAGAGAATATTGAGCAACAT+TGG | 0.515670 | 4_4:-80156599 | Msa0706940:CDS |
| AAAGATGAAAGTAGCCTGCC+AGG | 0.515923 | 4_4:+80155217 | None:intergenic |
| AGCAACATTGGACCTGCTGC+AGG | 0.516938 | 4_4:-80156587 | Msa0706940:intron |
| TAGGCAAATAGCTAAATGTA+TGG | 0.517341 | 4_4:-80157029 | None:intergenic |
| ATTGATGGAGACGTTACCAT+TGG | 0.528804 | 4_4:-80156117 | Msa0706940:CDS |
| ATGAATCCAAGTAGCCTGGC+AGG | 0.537000 | 4_4:-80155231 | Msa0706940:exon |
| ACTTGGATCAATTCCAAACT+GGG | 0.539991 | 4_4:+80155800 | None:intergenic |
| GAAGCTAGACGCTGCTCCAA+TGG | 0.546492 | 4_4:+80156101 | None:intergenic |
| ATGGATGAATCCAAGTAGCC+TGG | 0.548773 | 4_4:-80155235 | Msa0706940:exon |
| ATCTCAATCTTGTACCCCAA+TGG | 0.549644 | 4_4:-80155254 | Msa0706940:CDS |
| TTCAGAAACTTCAAGCGGAA+GGG | 0.552715 | 4_4:+80156908 | None:intergenic |
| TCTACTTGCTGACGGAAAGG+TGG | 0.554317 | 4_4:+80155947 | None:intergenic |
| TGTAACTTATTACCTGCAGC+AGG | 0.562977 | 4_4:+80156575 | None:intergenic |
| CTACTTGCTGACGGAAAGGT+GGG | 0.563809 | 4_4:+80155948 | None:intergenic |
| GAATCTACTTGCTGACGGAA+AGG | 0.566905 | 4_4:+80155944 | None:intergenic |
| CTTCAGAAACTTCAAGCGGA+AGG | 0.572912 | 4_4:+80156907 | None:intergenic |
| TCAAGCGGAAGGGATACATC+AGG | 0.576564 | 4_4:+80156918 | None:intergenic |
| TAAAAGAATCTACTTGCTGA+CGG | 0.580735 | 4_4:+80155939 | None:intergenic |
| ATTTAATTAGGCTTTGAACT+CGG | 0.598507 | 4_4:-80156170 | Msa0706940:intron |
| GGTTGTCCCGAACTTTGGTG+TGG | 0.640547 | 4_4:-80156672 | Msa0706940:CDS |
| TTGAAGATGACATCTCATCC+AGG | 0.641031 | 4_4:-80156878 | Msa0706940:intron |
| TCTAGCTTCCTATTTACCAG+AGG | 0.641283 | 4_4:-80156087 | Msa0706940:intron |
| GGATTCTGTCTCCAAGTCTG+AGG | 0.641302 | 4_4:-80155305 | Msa0706940:CDS |
| CTACTTGGATTCATCCATTG+GGG | 0.648704 | 4_4:+80155240 | None:intergenic |
| AGCATTCTTGATCCTGACGA+AGG | 0.660593 | 4_4:-80156477 | Msa0706940:intron |
| CATCAGGTTCTTCTTCACCA+AGG | 0.686746 | 4_4:+80156934 | None:intergenic |
| GTATCTTCAGAAACTTCAAG+CGG | 0.690380 | 4_4:+80156903 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAAAATATTAGCAAA+AGG | - | chr4_4:80155873-80155892 | Msa0706940:intron | 10.0% |
| !! | TAAAAATAAACAAAAAATGA+AGG | - | chr4_4:80156639-80156658 | Msa0706940:CDS | 10.0% |
| !! | TTATAAAAAATATTAGCAAA+AGG | - | chr4_4:80155873-80155892 | Msa0706940:intron | 10.0% |
| !! | TAAAAATAAACAAAAAATGA+AGG | - | chr4_4:80156639-80156658 | Msa0706940:CDS | 10.0% |
| !! | TGAAATGTAAAAAAGAAAAA+GGG | + | chr4_4:80156206-80156225 | None:intergenic | 15.0% |
| !! | ATGAAATGTAAAAAAGAAAA+AGG | + | chr4_4:80156207-80156226 | None:intergenic | 15.0% |
| !! | ATCAAAATCAATAACAATTA+AGG | + | chr4_4:80156361-80156380 | None:intergenic | 15.0% |
| !! | TGAAATGTAAAAAAGAAAAA+GGG | + | chr4_4:80156206-80156225 | None:intergenic | 15.0% |
| !! | ATGAAATGTAAAAAAGAAAA+AGG | + | chr4_4:80156207-80156226 | None:intergenic | 15.0% |
| !! | ATCAAAATCAATAACAATTA+AGG | + | chr4_4:80156361-80156380 | None:intergenic | 15.0% |
| !!! | TTTGGATATTCAAATGTTTT+CGG | - | chr4_4:80155248-80155267 | Msa0706940:CDS | 20.0% |
| !!! | CTAAAAGTTTGTTTTTTTGT+TGG | - | chr4_4:80155385-80155404 | Msa0706940:intron | 20.0% |
| !! | CATATCATCAAAAAAGTAAT+AGG | + | chr4_4:80155594-80155613 | None:intergenic | 20.0% |
| !!! | AGATTCTTTTACTTATGTAA+AGG | - | chr4_4:80156169-80156188 | Msa0706940:intron | 20.0% |
| !! | ATTTCATTTCAGAAGATATT+CGG | - | chr4_4:80156220-80156239 | Msa0706940:intron | 20.0% |
| !! | ACTAAAAACTTACATTTACT+TGG | + | chr4_4:80156316-80156335 | None:intergenic | 20.0% |
| !! | AAAATCAATAACAATTAAGG+TGG | + | chr4_4:80156358-80156377 | None:intergenic | 20.0% |
| !!! | TTTGGATATTCAAATGTTTT+CGG | - | chr4_4:80155248-80155267 | Msa0706940:CDS | 20.0% |
| !!! | CTAAAAGTTTGTTTTTTTGT+TGG | - | chr4_4:80155385-80155404 | Msa0706940:intron | 20.0% |
| !! | CATATCATCAAAAAAGTAAT+AGG | + | chr4_4:80155594-80155613 | None:intergenic | 20.0% |
| !!! | AGATTCTTTTACTTATGTAA+AGG | - | chr4_4:80156169-80156188 | Msa0706940:intron | 20.0% |
| !! | ATTTCATTTCAGAAGATATT+CGG | - | chr4_4:80156220-80156239 | Msa0706940:intron | 20.0% |
| !! | ACTAAAAACTTACATTTACT+TGG | + | chr4_4:80156316-80156335 | None:intergenic | 20.0% |
| !! | AAAATCAATAACAATTAAGG+TGG | + | chr4_4:80156358-80156377 | None:intergenic | 20.0% |
| ! | TATCTATTTATTTACCTGAC+TGG | - | chr4_4:80155359-80155378 | Msa0706940:intron | 25.0% |
| !! | CAGTTTTCTTGCATTTAATT+AGG | - | chr4_4:80155914-80155933 | Msa0706940:CDS | 25.0% |
| !!! | ATTTAATTAGGCTTTGAACT+CGG | - | chr4_4:80155926-80155945 | Msa0706940:CDS | 25.0% |
| ! | ATGTAGTATTCTATGATGTA+GGG | - | chr4_4:80156086-80156105 | Msa0706940:intron | 25.0% |
| ! | ATGTAAAAAAGAAAAAGGGA+GGG | + | chr4_4:80156202-80156221 | None:intergenic | 25.0% |
| ! | AATGTAAAAAAGAAAAAGGG+AGG | + | chr4_4:80156203-80156222 | None:intergenic | 25.0% |
| ! | CAAATGGAAAATGTGAATAA+AGG | + | chr4_4:80156462-80156481 | None:intergenic | 25.0% |
| !! | CTTTATTCACATTTTCCATT+TGG | - | chr4_4:80156460-80156479 | Msa0706940:intron | 25.0% |
| !!! | TATTTTCTGAGAATTACTAC+TGG | - | chr4_4:80156679-80156698 | Msa0706940:CDS | 25.0% |
| ! | TTCTATAGATACAAGAAACT+TGG | - | chr4_4:80156903-80156922 | Msa0706940:CDS | 25.0% |
| !! | AAACTAGCTTGTAAAGTAAA+TGG | + | chr4_4:80157012-80157031 | None:intergenic | 25.0% |
| ! | TATCTATTTATTTACCTGAC+TGG | - | chr4_4:80155359-80155378 | Msa0706940:intron | 25.0% |
| !! | CAGTTTTCTTGCATTTAATT+AGG | - | chr4_4:80155914-80155933 | Msa0706940:CDS | 25.0% |
| !!! | ATTTAATTAGGCTTTGAACT+CGG | - | chr4_4:80155926-80155945 | Msa0706940:CDS | 25.0% |
| ! | ATGTAGTATTCTATGATGTA+GGG | - | chr4_4:80156086-80156105 | Msa0706940:intron | 25.0% |
| ! | ATGTAAAAAAGAAAAAGGGA+GGG | + | chr4_4:80156202-80156221 | None:intergenic | 25.0% |
| ! | AATGTAAAAAAGAAAAAGGG+AGG | + | chr4_4:80156203-80156222 | None:intergenic | 25.0% |
| ! | CAAATGGAAAATGTGAATAA+AGG | + | chr4_4:80156462-80156481 | None:intergenic | 25.0% |
| !! | CTTTATTCACATTTTCCATT+TGG | - | chr4_4:80156460-80156479 | Msa0706940:intron | 25.0% |
| !!! | TATTTTCTGAGAATTACTAC+TGG | - | chr4_4:80156679-80156698 | Msa0706940:CDS | 25.0% |
| ! | TTCTATAGATACAAGAAACT+TGG | - | chr4_4:80156903-80156922 | Msa0706940:CDS | 25.0% |
| !! | AAACTAGCTTGTAAAGTAAA+TGG | + | chr4_4:80157012-80157031 | None:intergenic | 25.0% |
| AGATCTCAACACAGTTAAAA+GGG | + | chr4_4:80155569-80155588 | None:intergenic | 30.0% | |
| AGAGTCTTAATAGATAGCAA+GGG | + | chr4_4:80155669-80155688 | None:intergenic | 30.0% | |
| TATCTATTAAGACTCTGTGA+TGG | - | chr4_4:80155673-80155692 | Msa0706940:intron | 30.0% | |
| TAACATTACCTCTGGTAAAT+AGG | + | chr4_4:80156020-80156039 | None:intergenic | 30.0% | |
| CTACATGAATCACTAAACAA+AGG | + | chr4_4:80156072-80156091 | None:intergenic | 30.0% | |
| CATGTAGTATTCTATGATGT+AGG | - | chr4_4:80156085-80156104 | Msa0706940:intron | 30.0% | |
| AACAACTCCAATATATCTTC+TGG | + | chr4_4:80156122-80156141 | None:intergenic | 30.0% | |
| ! | TAAAAGAATCTACTTGCTGA+CGG | + | chr4_4:80156160-80156179 | None:intergenic | 30.0% |
| GATTATATATTTATCGCTGC+AGG | - | chr4_4:80156246-80156265 | Msa0706940:intron | 30.0% | |
| TGGAAAATGTGAATAAAGGT+GGG | + | chr4_4:80156458-80156477 | None:intergenic | 30.0% | |
| ATGGAAAATGTGAATAAAGG+TGG | + | chr4_4:80156459-80156478 | None:intergenic | 30.0% | |
| ! | CACATTTTCCATTTGGTATA+CGG | - | chr4_4:80156467-80156486 | Msa0706940:intron | 30.0% |
| ! | ACAAATTTGCTTTCTAGTAC+TGG | - | chr4_4:80156506-80156525 | Msa0706940:intron | 30.0% |
| TTGCTAATGAGTACAATACT+TGG | - | chr4_4:80156548-80156567 | Msa0706940:intron | 30.0% | |
| TTCAAAGTTTCATGTCTTGT+AGG | - | chr4_4:80156576-80156595 | Msa0706940:intron | 30.0% | |
| AATGAAGGAAAAAAGATACG+AGG | - | chr4_4:80156654-80156673 | Msa0706940:CDS | 30.0% | |
| AGATCTCAACACAGTTAAAA+GGG | + | chr4_4:80155569-80155588 | None:intergenic | 30.0% | |
| AGAGTCTTAATAGATAGCAA+GGG | + | chr4_4:80155669-80155688 | None:intergenic | 30.0% | |
| TATCTATTAAGACTCTGTGA+TGG | - | chr4_4:80155673-80155692 | Msa0706940:intron | 30.0% | |
| TAACATTACCTCTGGTAAAT+AGG | + | chr4_4:80156020-80156039 | None:intergenic | 30.0% | |
| CTACATGAATCACTAAACAA+AGG | + | chr4_4:80156072-80156091 | None:intergenic | 30.0% | |
| CATGTAGTATTCTATGATGT+AGG | - | chr4_4:80156085-80156104 | Msa0706940:intron | 30.0% | |
| AACAACTCCAATATATCTTC+TGG | + | chr4_4:80156122-80156141 | None:intergenic | 30.0% | |
| ! | TAAAAGAATCTACTTGCTGA+CGG | + | chr4_4:80156160-80156179 | None:intergenic | 30.0% |
| GATTATATATTTATCGCTGC+AGG | - | chr4_4:80156246-80156265 | Msa0706940:intron | 30.0% | |
| TGGAAAATGTGAATAAAGGT+GGG | + | chr4_4:80156458-80156477 | None:intergenic | 30.0% | |
| ATGGAAAATGTGAATAAAGG+TGG | + | chr4_4:80156459-80156478 | None:intergenic | 30.0% | |
| ! | CACATTTTCCATTTGGTATA+CGG | - | chr4_4:80156467-80156486 | Msa0706940:intron | 30.0% |
| ! | ACAAATTTGCTTTCTAGTAC+TGG | - | chr4_4:80156506-80156525 | Msa0706940:intron | 30.0% |
| TTGCTAATGAGTACAATACT+TGG | - | chr4_4:80156548-80156567 | Msa0706940:intron | 30.0% | |
| TTCAAAGTTTCATGTCTTGT+AGG | - | chr4_4:80156576-80156595 | Msa0706940:intron | 30.0% | |
| AATGAAGGAAAAAAGATACG+AGG | - | chr4_4:80156654-80156673 | Msa0706940:CDS | 30.0% | |
| GTATCTTCAGAAACTTCAAG+CGG | + | chr4_4:80155196-80155215 | None:intergenic | 35.0% | |
| ! | GCTTGAAGTTTCTGAAGATA+CGG | - | chr4_4:80155195-80155214 | Msa0706940:three_prime_UTR | 35.0% |
| GAATATCCAAACTAAGTACC+TGG | + | chr4_4:80155239-80155258 | None:intergenic | 35.0% | |
| GATATGCAATGCACTAGTAA+GGG | + | chr4_4:80155343-80155362 | None:intergenic | 35.0% | |
| AGATATGCAATGCACTAGTA+AGG | + | chr4_4:80155344-80155363 | None:intergenic | 35.0% | |
| ATCTTCTGGTCCAGTTAAAT+TGG | - | chr4_4:80155466-80155485 | Msa0706940:intron | 35.0% | |
| CAATGTTGCTCAATATTCTC+TGG | + | chr4_4:80155499-80155518 | None:intergenic | 35.0% | |
| CAGAGAATATTGAGCAACAT+TGG | - | chr4_4:80155497-80155516 | Msa0706940:intron | 35.0% | |
| CAGATCTCAACACAGTTAAA+AGG | + | chr4_4:80155570-80155589 | None:intergenic | 35.0% | |
| CAGAGTCTTAATAGATAGCA+AGG | + | chr4_4:80155670-80155689 | None:intergenic | 35.0% | |
| AAAACTGTATCCCATGATGA+GGG | - | chr4_4:80155807-80155826 | Msa0706940:CDS | 35.0% | |
| ATCAATGGCAATATCAGATC+AGG | + | chr4_4:80155965-80155984 | None:intergenic | 35.0% | |
| TGATCTGATATTGCCATTGA+TGG | - | chr4_4:80155964-80155983 | Msa0706940:CDS | 35.0% | |
| CATTGGTATAACATTACCTC+TGG | + | chr4_4:80156028-80156047 | None:intergenic | 35.0% | |
| ! | ATTCTATGATGTAGGGTACT+TGG | - | chr4_4:80156093-80156112 | Msa0706940:CDS | 35.0% |
| TTGGTCTCCAGAAGATATAT+TGG | - | chr4_4:80156112-80156131 | Msa0706940:CDS | 35.0% | |
| ACTTGGATCAATTCCAAACT+GGG | + | chr4_4:80156299-80156318 | None:intergenic | 35.0% | |
| TACTTGGATCAATTCCAAAC+TGG | + | chr4_4:80156300-80156319 | None:intergenic | 35.0% | |
| AAAATGTGAATAAAGGTGGG+AGG | + | chr4_4:80156455-80156474 | None:intergenic | 35.0% | |
| TTTCATGTCTTGTAGGTTTC+AGG | - | chr4_4:80156583-80156602 | Msa0706940:intron | 35.0% | |
| !! | GTTCACAGTTTTGTCTTTTC+TGG | - | chr4_4:80156758-80156777 | Msa0706940:intron | 35.0% |
| GTATCTTCAGAAACTTCAAG+CGG | + | chr4_4:80155196-80155215 | None:intergenic | 35.0% | |
| ! | GCTTGAAGTTTCTGAAGATA+CGG | - | chr4_4:80155195-80155214 | Msa0706940:three_prime_UTR | 35.0% |
| GAATATCCAAACTAAGTACC+TGG | + | chr4_4:80155239-80155258 | None:intergenic | 35.0% | |
| GATATGCAATGCACTAGTAA+GGG | + | chr4_4:80155343-80155362 | None:intergenic | 35.0% | |
| AGATATGCAATGCACTAGTA+AGG | + | chr4_4:80155344-80155363 | None:intergenic | 35.0% | |
| ATCTTCTGGTCCAGTTAAAT+TGG | - | chr4_4:80155466-80155485 | Msa0706940:intron | 35.0% | |
| CAATGTTGCTCAATATTCTC+TGG | + | chr4_4:80155499-80155518 | None:intergenic | 35.0% | |
| CAGAGAATATTGAGCAACAT+TGG | - | chr4_4:80155497-80155516 | Msa0706940:intron | 35.0% | |
| CAGATCTCAACACAGTTAAA+AGG | + | chr4_4:80155570-80155589 | None:intergenic | 35.0% | |
| CAGAGTCTTAATAGATAGCA+AGG | + | chr4_4:80155670-80155689 | None:intergenic | 35.0% | |
| AAAACTGTATCCCATGATGA+GGG | - | chr4_4:80155807-80155826 | Msa0706940:CDS | 35.0% | |
| ATCAATGGCAATATCAGATC+AGG | + | chr4_4:80155965-80155984 | None:intergenic | 35.0% | |
| TGATCTGATATTGCCATTGA+TGG | - | chr4_4:80155964-80155983 | Msa0706940:CDS | 35.0% | |
| CATTGGTATAACATTACCTC+TGG | + | chr4_4:80156028-80156047 | None:intergenic | 35.0% | |
| ! | ATTCTATGATGTAGGGTACT+TGG | - | chr4_4:80156093-80156112 | Msa0706940:CDS | 35.0% |
| TTGGTCTCCAGAAGATATAT+TGG | - | chr4_4:80156112-80156131 | Msa0706940:CDS | 35.0% | |
| ACTTGGATCAATTCCAAACT+GGG | + | chr4_4:80156299-80156318 | None:intergenic | 35.0% | |
| TACTTGGATCAATTCCAAAC+TGG | + | chr4_4:80156300-80156319 | None:intergenic | 35.0% | |
| AAAATGTGAATAAAGGTGGG+AGG | + | chr4_4:80156455-80156474 | None:intergenic | 35.0% | |
| TTTCATGTCTTGTAGGTTTC+AGG | - | chr4_4:80156583-80156602 | Msa0706940:intron | 35.0% | |
| !! | GTTCACAGTTTTGTCTTTTC+TGG | - | chr4_4:80156758-80156777 | Msa0706940:intron | 35.0% |
| TTCAGAAACTTCAAGCGGAA+GGG | + | chr4_4:80155191-80155210 | None:intergenic | 40.0% | |
| TTGAAGATGACATCTCATCC+AGG | - | chr4_4:80155218-80155237 | Msa0706940:three_prime_UTR | 40.0% | |
| TCTCATCCAGGTACTTAGTT+TGG | - | chr4_4:80155230-80155249 | Msa0706940:exon | 40.0% | |
| CAATGCACTAGTAAGGGATT+TGG | + | chr4_4:80155337-80155356 | None:intergenic | 40.0% | |
| ! | CAAACTTTTAGTGTCCAGTC+AGG | + | chr4_4:80155376-80155395 | None:intergenic | 40.0% |
| ACTAGCGATGTAACATCTTC+TGG | - | chr4_4:80155452-80155471 | Msa0706940:intron | 40.0% | |
| TGGAGATCTGCCAATTTAAC+TGG | + | chr4_4:80155479-80155498 | None:intergenic | 40.0% | |
| TGTAACTTATTACCTGCAGC+AGG | + | chr4_4:80155524-80155543 | None:intergenic | 40.0% | |
| CAAAACTGTATCCCATGATG+AGG | - | chr4_4:80155806-80155825 | Msa0706940:CDS | 40.0% | |
| AAACTGTATCCCATGATGAG+GGG | - | chr4_4:80155808-80155827 | Msa0706940:CDS | 40.0% | |
| ATACTAATGCCCCTCATCAT+GGG | + | chr4_4:80155820-80155839 | None:intergenic | 40.0% | |
| GGCATTAGTATGCAGTTTGA+CGG | - | chr4_4:80155829-80155848 | Msa0706940:CDS | 40.0% | |
| GCATTAGTATGCAGTTTGAC+GGG | - | chr4_4:80155830-80155849 | Msa0706940:CDS | 40.0% | |
| ! | AATGGTAACGTCTCCATCAA+TGG | + | chr4_4:80155980-80155999 | None:intergenic | 40.0% |
| ATTGATGGAGACGTTACCAT+TGG | - | chr4_4:80155979-80155998 | Msa0706940:CDS | 40.0% | |
| ! | TCTAGCTTCCTATTTACCAG+AGG | - | chr4_4:80156009-80156028 | Msa0706940:intron | 40.0% |
| CGAAAAGTCAATCGCTACAT+TGG | + | chr4_4:80156045-80156064 | None:intergenic | 40.0% | |
| CAGATAGATTTGTCCCAGTT+TGG | - | chr4_4:80156283-80156302 | Msa0706940:intron | 40.0% | |
| TCTCCAATCTAGTGTGTTGT+AGG | - | chr4_4:80156416-80156435 | Msa0706940:intron | 40.0% | |
| CTCCAATCTAGTGTGTTGTA+GGG | - | chr4_4:80156417-80156436 | Msa0706940:intron | 40.0% | |
| TTCCATTTGGTATACGGTAG+AGG | - | chr4_4:80156473-80156492 | Msa0706940:intron | 40.0% | |
| ! | TTTGCTTTCTAGTACTGGAG+TGG | - | chr4_4:80156511-80156530 | Msa0706940:intron | 40.0% |
| !!! | CTGATTCTTTGTTTTCCCCT+TGG | - | chr4_4:80156728-80156747 | Msa0706940:intron | 40.0% |
| !! | CACAGTTTTGTCTTTTCTGG+AGG | - | chr4_4:80156761-80156780 | Msa0706940:intron | 40.0% |
| ATCTCAATCTTGTACCCCAA+TGG | - | chr4_4:80156842-80156861 | Msa0706940:intron | 40.0% | |
| CTACTTGGATTCATCCATTG+GGG | + | chr4_4:80156859-80156878 | None:intergenic | 40.0% | |
| GCTACTTGGATTCATCCATT+GGG | + | chr4_4:80156860-80156879 | None:intergenic | 40.0% | |
| TTCAGAAACTTCAAGCGGAA+GGG | + | chr4_4:80155191-80155210 | None:intergenic | 40.0% | |
| TTGAAGATGACATCTCATCC+AGG | - | chr4_4:80155218-80155237 | Msa0706940:three_prime_UTR | 40.0% | |
| TCTCATCCAGGTACTTAGTT+TGG | - | chr4_4:80155230-80155249 | Msa0706940:exon | 40.0% | |
| CAATGCACTAGTAAGGGATT+TGG | + | chr4_4:80155337-80155356 | None:intergenic | 40.0% | |
| ! | CAAACTTTTAGTGTCCAGTC+AGG | + | chr4_4:80155376-80155395 | None:intergenic | 40.0% |
| ACTAGCGATGTAACATCTTC+TGG | - | chr4_4:80155452-80155471 | Msa0706940:intron | 40.0% | |
| TGGAGATCTGCCAATTTAAC+TGG | + | chr4_4:80155479-80155498 | None:intergenic | 40.0% | |
| TGTAACTTATTACCTGCAGC+AGG | + | chr4_4:80155524-80155543 | None:intergenic | 40.0% | |
| CAAAACTGTATCCCATGATG+AGG | - | chr4_4:80155806-80155825 | Msa0706940:CDS | 40.0% | |
| AAACTGTATCCCATGATGAG+GGG | - | chr4_4:80155808-80155827 | Msa0706940:CDS | 40.0% | |
| ATACTAATGCCCCTCATCAT+GGG | + | chr4_4:80155820-80155839 | None:intergenic | 40.0% | |
| GGCATTAGTATGCAGTTTGA+CGG | - | chr4_4:80155829-80155848 | Msa0706940:CDS | 40.0% | |
| GCATTAGTATGCAGTTTGAC+GGG | - | chr4_4:80155830-80155849 | Msa0706940:CDS | 40.0% | |
| ! | AATGGTAACGTCTCCATCAA+TGG | + | chr4_4:80155980-80155999 | None:intergenic | 40.0% |
| ATTGATGGAGACGTTACCAT+TGG | - | chr4_4:80155979-80155998 | Msa0706940:CDS | 40.0% | |
| ! | TCTAGCTTCCTATTTACCAG+AGG | - | chr4_4:80156009-80156028 | Msa0706940:intron | 40.0% |
| CGAAAAGTCAATCGCTACAT+TGG | + | chr4_4:80156045-80156064 | None:intergenic | 40.0% | |
| CAGATAGATTTGTCCCAGTT+TGG | - | chr4_4:80156283-80156302 | Msa0706940:intron | 40.0% | |
| TCTCCAATCTAGTGTGTTGT+AGG | - | chr4_4:80156416-80156435 | Msa0706940:intron | 40.0% | |
| CTCCAATCTAGTGTGTTGTA+GGG | - | chr4_4:80156417-80156436 | Msa0706940:intron | 40.0% | |
| TTCCATTTGGTATACGGTAG+AGG | - | chr4_4:80156473-80156492 | Msa0706940:intron | 40.0% | |
| ! | TTTGCTTTCTAGTACTGGAG+TGG | - | chr4_4:80156511-80156530 | Msa0706940:intron | 40.0% |
| !!! | CTGATTCTTTGTTTTCCCCT+TGG | - | chr4_4:80156728-80156747 | Msa0706940:intron | 40.0% |
| !! | CACAGTTTTGTCTTTTCTGG+AGG | - | chr4_4:80156761-80156780 | Msa0706940:intron | 40.0% |
| ATCTCAATCTTGTACCCCAA+TGG | - | chr4_4:80156842-80156861 | Msa0706940:intron | 40.0% | |
| CTACTTGGATTCATCCATTG+GGG | + | chr4_4:80156859-80156878 | None:intergenic | 40.0% | |
| GCTACTTGGATTCATCCATT+GGG | + | chr4_4:80156860-80156879 | None:intergenic | 40.0% | |
| ! | AGCGTGTTACTCTTCACTTC+TGG | + | chr4_4:80155115-80155134 | None:intergenic | 45.0% |
| TTCTCACTAACAGAGCTCCT+TGG | - | chr4_4:80155145-80155164 | Msa0706940:three_prime_UTR | 45.0% | |
| CATCAGGTTCTTCTTCACCA+AGG | + | chr4_4:80155165-80155184 | None:intergenic | 45.0% | |
| CTTCAGAAACTTCAAGCGGA+AGG | + | chr4_4:80155192-80155211 | None:intergenic | 45.0% | |
| GTTGGAAAGAGCTGCAAACT+TGG | - | chr4_4:80155403-80155422 | Msa0706940:intron | 45.0% | |
| AACTTGGTTGTCCCGAACTT+TGG | - | chr4_4:80155419-80155438 | Msa0706940:intron | 45.0% | |
| TTGCATCCACACCAAAGTTC+GGG | + | chr4_4:80155433-80155452 | None:intergenic | 45.0% | |
| GTTGCATCCACACCAAAGTT+CGG | + | chr4_4:80155434-80155453 | None:intergenic | 45.0% | |
| AGCATTCTTGATCCTGACGA+AGG | - | chr4_4:80155619-80155638 | Msa0706940:intron | 45.0% | |
| TCCTGACGAAGGTAATCACT+TGG | - | chr4_4:80155630-80155649 | Msa0706940:intron | 45.0% | |
| CATACTAATGCCCCTCATCA+TGG | + | chr4_4:80155821-80155840 | None:intergenic | 45.0% | |
| ! | GAATCTACTTGCTGACGGAA+AGG | + | chr4_4:80156155-80156174 | None:intergenic | 45.0% |
| GGAGAAGTAACAACTACAGC+TGG | + | chr4_4:80156401-80156420 | None:intergenic | 45.0% | |
| GTCCCTACAACACACTAGAT+TGG | + | chr4_4:80156422-80156441 | None:intergenic | 45.0% | |
| AGCCTCTACCGTATACCAAA+TGG | + | chr4_4:80156478-80156497 | None:intergenic | 45.0% | |
| ACTGTGAACTTGTCTGCCAA+GGG | + | chr4_4:80156747-80156766 | None:intergenic | 45.0% | |
| AACTGTGAACTTGTCTGCCA+AGG | + | chr4_4:80156748-80156767 | None:intergenic | 45.0% | |
| TCTCCAAGTCTGAGGAATCT+AGG | - | chr4_4:80156799-80156818 | Msa0706940:intron | 45.0% | |
| TTGCCTAGATTCCTCAGACT+TGG | + | chr4_4:80156805-80156824 | None:intergenic | 45.0% | |
| GGAATCTAGGCAAGATGATC+AGG | - | chr4_4:80156812-80156831 | Msa0706940:intron | 45.0% | |
| GGCTACTTGGATTCATCCAT+TGG | + | chr4_4:80156861-80156880 | None:intergenic | 45.0% | |
| ATGGATGAATCCAAGTAGCC+TGG | - | chr4_4:80156861-80156880 | Msa0706940:intron | 45.0% | |
| AAAGATGAAAGTAGCCTGCC+AGG | + | chr4_4:80156882-80156901 | None:intergenic | 45.0% | |
| ! | AGCGTGTTACTCTTCACTTC+TGG | + | chr4_4:80155115-80155134 | None:intergenic | 45.0% |
| TTCTCACTAACAGAGCTCCT+TGG | - | chr4_4:80155145-80155164 | Msa0706940:three_prime_UTR | 45.0% | |
| CATCAGGTTCTTCTTCACCA+AGG | + | chr4_4:80155165-80155184 | None:intergenic | 45.0% | |
| CTTCAGAAACTTCAAGCGGA+AGG | + | chr4_4:80155192-80155211 | None:intergenic | 45.0% | |
| GTTGGAAAGAGCTGCAAACT+TGG | - | chr4_4:80155403-80155422 | Msa0706940:intron | 45.0% | |
| AACTTGGTTGTCCCGAACTT+TGG | - | chr4_4:80155419-80155438 | Msa0706940:intron | 45.0% | |
| TTGCATCCACACCAAAGTTC+GGG | + | chr4_4:80155433-80155452 | None:intergenic | 45.0% | |
| GTTGCATCCACACCAAAGTT+CGG | + | chr4_4:80155434-80155453 | None:intergenic | 45.0% | |
| AGCATTCTTGATCCTGACGA+AGG | - | chr4_4:80155619-80155638 | Msa0706940:intron | 45.0% | |
| TCCTGACGAAGGTAATCACT+TGG | - | chr4_4:80155630-80155649 | Msa0706940:intron | 45.0% | |
| CATACTAATGCCCCTCATCA+TGG | + | chr4_4:80155821-80155840 | None:intergenic | 45.0% | |
| ! | GAATCTACTTGCTGACGGAA+AGG | + | chr4_4:80156155-80156174 | None:intergenic | 45.0% |
| GGAGAAGTAACAACTACAGC+TGG | + | chr4_4:80156401-80156420 | None:intergenic | 45.0% | |
| GTCCCTACAACACACTAGAT+TGG | + | chr4_4:80156422-80156441 | None:intergenic | 45.0% | |
| AGCCTCTACCGTATACCAAA+TGG | + | chr4_4:80156478-80156497 | None:intergenic | 45.0% | |
| ACTGTGAACTTGTCTGCCAA+GGG | + | chr4_4:80156747-80156766 | None:intergenic | 45.0% | |
| AACTGTGAACTTGTCTGCCA+AGG | + | chr4_4:80156748-80156767 | None:intergenic | 45.0% | |
| TCTCCAAGTCTGAGGAATCT+AGG | - | chr4_4:80156799-80156818 | Msa0706940:intron | 45.0% | |
| TTGCCTAGATTCCTCAGACT+TGG | + | chr4_4:80156805-80156824 | None:intergenic | 45.0% | |
| GGAATCTAGGCAAGATGATC+AGG | - | chr4_4:80156812-80156831 | Msa0706940:intron | 45.0% | |
| GGCTACTTGGATTCATCCAT+TGG | + | chr4_4:80156861-80156880 | None:intergenic | 45.0% | |
| ATGGATGAATCCAAGTAGCC+TGG | - | chr4_4:80156861-80156880 | Msa0706940:intron | 45.0% | |
| AAAGATGAAAGTAGCCTGCC+AGG | + | chr4_4:80156882-80156901 | None:intergenic | 45.0% | |
| TCAAGCGGAAGGGATACATC+AGG | + | chr4_4:80155181-80155200 | None:intergenic | 50.0% | |
| GCCAAGTGATTACCTTCGTC+AGG | + | chr4_4:80155634-80155653 | None:intergenic | 50.0% | |
| ! | CTACTTGCTGACGGAAAGGT+GGG | + | chr4_4:80156151-80156170 | None:intergenic | 50.0% |
| ! | TCTACTTGCTGACGGAAAGG+TGG | + | chr4_4:80156152-80156171 | None:intergenic | 50.0% |
| TGTAGGTTTCAGGCGTGTGT+AGG | - | chr4_4:80156593-80156612 | Msa0706940:CDS | 50.0% | |
| CTGTGAACTTGTCTGCCAAG+GGG | + | chr4_4:80156746-80156765 | None:intergenic | 50.0% | |
| !! | GTCTTTTCTGGAGGCTCTTG+AGG | - | chr4_4:80156770-80156789 | Msa0706940:intron | 50.0% |
| GGATTCTGTCTCCAAGTCTG+AGG | - | chr4_4:80156791-80156810 | Msa0706940:intron | 50.0% | |
| ATGAATCCAAGTAGCCTGGC+AGG | - | chr4_4:80156865-80156884 | Msa0706940:intron | 50.0% | |
| TCAAGCGGAAGGGATACATC+AGG | + | chr4_4:80155181-80155200 | None:intergenic | 50.0% | |
| GCCAAGTGATTACCTTCGTC+AGG | + | chr4_4:80155634-80155653 | None:intergenic | 50.0% | |
| ! | CTACTTGCTGACGGAAAGGT+GGG | + | chr4_4:80156151-80156170 | None:intergenic | 50.0% |
| ! | TCTACTTGCTGACGGAAAGG+TGG | + | chr4_4:80156152-80156171 | None:intergenic | 50.0% |
| TGTAGGTTTCAGGCGTGTGT+AGG | - | chr4_4:80156593-80156612 | Msa0706940:CDS | 50.0% | |
| CTGTGAACTTGTCTGCCAAG+GGG | + | chr4_4:80156746-80156765 | None:intergenic | 50.0% | |
| !! | GTCTTTTCTGGAGGCTCTTG+AGG | - | chr4_4:80156770-80156789 | Msa0706940:intron | 50.0% |
| GGATTCTGTCTCCAAGTCTG+AGG | - | chr4_4:80156791-80156810 | Msa0706940:intron | 50.0% | |
| ATGAATCCAAGTAGCCTGGC+AGG | - | chr4_4:80156865-80156884 | Msa0706940:intron | 50.0% | |
| GGTTGTCCCGAACTTTGGTG+TGG | - | chr4_4:80155424-80155443 | Msa0706940:intron | 55.0% | |
| AGCAACATTGGACCTGCTGC+AGG | - | chr4_4:80155509-80155528 | Msa0706940:intron | 55.0% | |
| GAAGCTAGACGCTGCTCCAA+TGG | + | chr4_4:80155998-80156017 | None:intergenic | 55.0% | |
| TCGCTGCAGGTACTTCGAAC+AGG | - | chr4_4:80156259-80156278 | Msa0706940:intron | 55.0% | |
| AAGTAGCCTGCCAGGCTACT+TGG | + | chr4_4:80156874-80156893 | None:intergenic | 55.0% | |
| GGTTGTCCCGAACTTTGGTG+TGG | - | chr4_4:80155424-80155443 | Msa0706940:intron | 55.0% | |
| AGCAACATTGGACCTGCTGC+AGG | - | chr4_4:80155509-80155528 | Msa0706940:intron | 55.0% | |
| GAAGCTAGACGCTGCTCCAA+TGG | + | chr4_4:80155998-80156017 | None:intergenic | 55.0% | |
| TCGCTGCAGGTACTTCGAAC+AGG | - | chr4_4:80156259-80156278 | Msa0706940:intron | 55.0% | |
| AAGTAGCCTGCCAGGCTACT+TGG | + | chr4_4:80156874-80156893 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 80155082 | 80157036 | 80155082 | ID=Msa0706940;Name=Msa0706940 |
| chr4_4 | mRNA | 80155082 | 80157036 | 80155082 | ID=Msa0706940-mRNA-1;Parent=Msa0706940;Name=Msa0706940-mRNA-1;_AED=0.50;_eAED=0.53;_QI=0|0.66|0.57|1|1|1|7|158|234 |
| chr4_4 | exon | 80155082 | 80155364 | 80155082 | ID=Msa0706940-mRNA-1:exon:25984;Parent=Msa0706940-mRNA-1 |
| chr4_4 | exon | 80155802 | 80155850 | 80155802 | ID=Msa0706940-mRNA-1:exon:25983;Parent=Msa0706940-mRNA-1 |
| chr4_4 | exon | 80155877 | 80156011 | 80155877 | ID=Msa0706940-mRNA-1:exon:25982;Parent=Msa0706940-mRNA-1 |
| chr4_4 | exon | 80156088 | 80156182 | 80156088 | ID=Msa0706940-mRNA-1:exon:25981;Parent=Msa0706940-mRNA-1 |
| chr4_4 | exon | 80156478 | 80156501 | 80156478 | ID=Msa0706940-mRNA-1:exon:25980;Parent=Msa0706940-mRNA-1 |
| chr4_4 | exon | 80156588 | 80156706 | 80156588 | ID=Msa0706940-mRNA-1:exon:25979;Parent=Msa0706940-mRNA-1 |
| chr4_4 | exon | 80156879 | 80157036 | 80156879 | ID=Msa0706940-mRNA-1:exon:25978;Parent=Msa0706940-mRNA-1 |
| chr4_4 | CDS | 80156879 | 80157036 | 80156879 | ID=Msa0706940-mRNA-1:cds;Parent=Msa0706940-mRNA-1 |
| chr4_4 | CDS | 80156588 | 80156706 | 80156588 | ID=Msa0706940-mRNA-1:cds;Parent=Msa0706940-mRNA-1 |
| chr4_4 | CDS | 80156478 | 80156501 | 80156478 | ID=Msa0706940-mRNA-1:cds;Parent=Msa0706940-mRNA-1 |
| chr4_4 | CDS | 80156088 | 80156182 | 80156088 | ID=Msa0706940-mRNA-1:cds;Parent=Msa0706940-mRNA-1 |
| chr4_4 | CDS | 80155877 | 80156011 | 80155877 | ID=Msa0706940-mRNA-1:cds;Parent=Msa0706940-mRNA-1 |
| chr4_4 | CDS | 80155802 | 80155850 | 80155802 | ID=Msa0706940-mRNA-1:cds;Parent=Msa0706940-mRNA-1 |
| chr4_4 | CDS | 80155240 | 80155364 | 80155240 | ID=Msa0706940-mRNA-1:cds;Parent=Msa0706940-mRNA-1 |
| chr4_4 | three_prime_UTR | 80155082 | 80155239 | 80155082 | ID=Msa0706940-mRNA-1:three_prime_utr;Parent=Msa0706940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
