AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1336710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1336710 MtrunA17_Chr5g0408121 97.744 133 3 0 1 133 1 133 2.62e-93 265
Msa1336710 MtrunA17_Chr5g0408111 37.662 77 48 0 26 102 54 130 1.11e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 65 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGCCGTCGCCGAAATTA+TGG 0.132420 tig0001315:-2923 Msa1336710:CDS
TCATCAAACTCTACAGTTTC+CGG 0.200149 tig0001315:-2798 Msa1336710:CDS
CATAATTTCGGCGACGGCTT+TGG 0.257033 tig0001315:+2924 None:intergenic
AACTTGGTGCCCGTTTGTTT+TGG 0.274389 tig0001315:+3050 None:intergenic
ATGAATCCGGCGGGTTTAAC+AGG 0.280966 tig0001315:-2970 Msa1336710:CDS
GGAAATGATGGAAGCAATTT+CGG 0.295914 tig0001315:+2825 None:intergenic
TTTGAGTATTGAAACTAGTT+TGG 0.342271 tig0001315:-1485 Msa1336710:three_prime_UTR
ATCTAACTTGGTTCCTATCT+AGG 0.344574 tig0001315:+1588 None:intergenic
CGCCGGATTCATCCTTCTGC+TGG 0.358107 tig0001315:+2981 None:intergenic
CAGTGAACTCTGCACTTTCA+TGG 0.368977 tig0001315:-2869 Msa1336710:CDS
CTGCATGATAATTTCATGAA+TGG 0.375196 tig0001315:-1528 Msa1336710:three_prime_UTR
CATCAAACTCTACAGTTTCC+GGG 0.376717 tig0001315:-2797 Msa1336710:intron
ATCGCACCCTGGCTGAATTC+CGG 0.377231 tig0001315:+1726 None:intergenic
TTTGCCGACACCCATAATTT+CGG 0.382001 tig0001315:+2912 None:intergenic
TTTGATGAACTTGGAAATGA+TGG 0.402949 tig0001315:+2813 None:intergenic
ACTGGTAGCTTTGCGTGTCT+TGG 0.404946 tig0001315:+2888 None:intergenic
AAAGCCGTCGCCGAAATTAT+GGG 0.406307 tig0001315:-2922 Msa1336710:CDS
CAGAAAATGAATATTGTCAT+TGG 0.428328 tig0001315:+1447 None:intergenic
GTATCAAGAAAGACAAGCTT+TGG 0.428352 tig0001315:-1821 Msa1336710:CDS
ACTGTAGAGTTTGATGAACT+TGG 0.446589 tig0001315:+2804 None:intergenic
TGTCCCGTTTGCAACTAGTC+AGG 0.457794 tig0001315:-1416 Msa1336710:three_prime_UTR
GGGAAAGGCCAACAGAAGAA+AGG 0.464992 tig0001315:-1657 Msa1336710:CDS
GACAGAATCTTAGCAATCTC+AGG 0.466374 tig0001315:+1750 None:intergenic
TTTGTTAGTCCAAAACAAAC+GGG 0.474481 tig0001315:-3059 Msa1336710:five_prime_UTR
AAAATAATGAAGCAGCAAAC+GGG 0.496036 tig0001315:+1346 None:intergenic
TAATATCAAGGATACTAATA+CGG 0.503603 tig0001315:-1703 Msa1336710:CDS
TCTGTCTCCGGAATTCAGCC+AGG 0.504471 tig0001315:-1733 Msa1336710:CDS
GGAAAGGCCAACAGAAGAAA+GGG 0.508550 tig0001315:-1656 Msa1336710:CDS
GATTGCTAAGATTCTGTCTC+CGG 0.511219 tig0001315:-1745 Msa1336710:CDS
AGTGAACTCTGCACTTTCAT+GGG 0.512210 tig0001315:-2868 Msa1336710:CDS
AAAACAAACGGGCACCAAGT+TGG 0.512519 tig0001315:-3048 Msa1336710:five_prime_UTR
AGCTTGTCTTTCTTGATACC+AGG 0.515565 tig0001315:+1825 None:intergenic
TATGGTGTTGTGCAGAGTCC+TGG 0.516143 tig0001315:-1843 Msa1336710:intron
CCAGGGTGCGATTAATATCA+AGG 0.519238 tig0001315:-1715 Msa1336710:CDS
CATGAAAGTGCAGAGTTCAC+TGG 0.524418 tig0001315:+2870 None:intergenic
ATAGCCTGACTAGTTGCAAA+CGG 0.526284 tig0001315:+1412 None:intergenic
ATCCAGCAGAAGGATGAATC+CGG 0.526821 tig0001315:-2983 Msa1336710:exon
TAGCCTGACTAGTTGCAAAC+GGG 0.535761 tig0001315:+1413 None:intergenic
CTTCGCCCTGTTAAACCCGC+CGG 0.548257 tig0001315:+2964 None:intergenic
GACACCCATAATTTCGGCGA+CGG 0.548577 tig0001315:+2918 None:intergenic
TATCAAGAAAGACAAGCTTT+GGG 0.550356 tig0001315:-1820 Msa1336710:CDS
AGGAAGTGGAGGCATGTGGT+TGG 0.560814 tig0001315:-1623 Msa1336710:three_prime_UTR
TCTTCCGCGGATAACACAAA+GGG 0.561908 tig0001315:-1678 Msa1336710:CDS
GCGGATAACACAAAGGGGAA+AGG 0.582569 tig0001315:-1672 Msa1336710:CDS
GTCGCCGAAATTATGGGTGT+CGG 0.593807 tig0001315:-2916 Msa1336710:CDS
CTAGTTTGGCTATTGCCTTG+TGG 0.596708 tig0001315:-1471 Msa1336710:three_prime_UTR
TTCTTCCGCGGATAACACAA+AGG 0.602214 tig0001315:-1679 Msa1336710:CDS
CGGCGGGTTTAACAGGGCGA+AGG 0.602549 tig0001315:-2963 Msa1336710:CDS
TGAATCCGGCGGGTTTAACA+GGG 0.604481 tig0001315:-2969 Msa1336710:CDS
CGGGCACCAAGTTGGATCAA+CGG 0.605928 tig0001315:-3040 Msa1336710:five_prime_UTR
GTGCTGCCGTTGATCCAACT+TGG 0.607537 tig0001315:+3034 None:intergenic
AGCAGAAGGATGAATCCGGC+GGG 0.612519 tig0001315:-2979 Msa1336710:exon
AATATTGTCATTGGACCACA+AGG 0.613637 tig0001315:+1456 None:intergenic
AAATAGGAAGTGGAGGCATG+TGG 0.631407 tig0001315:-1627 Msa1336710:exon
AATTTGCAAACACTGTTGCG+TGG 0.632781 tig0001315:-1792 Msa1336710:CDS
TTGCGTGGCAGAAACAGCGT+TGG 0.639499 tig0001315:-1777 Msa1336710:CDS
ATTTCGGAACGAGATTGATG+AGG 0.642540 tig0001315:+2841 None:intergenic
CTGTCTCCGGAATTCAGCCA+GGG 0.642587 tig0001315:-1732 Msa1336710:CDS
AGGGCGAAGGAGCATGTCGA+CGG 0.655015 tig0001315:-2950 Msa1336710:CDS
CAGCAGAAGGATGAATCCGG+CGG 0.656372 tig0001315:-2980 Msa1336710:exon
TACTAATACGGATTCTTCCG+CGG 0.657291 tig0001315:-1691 Msa1336710:CDS
CCTTGATATTAATCGCACCC+TGG 0.662781 tig0001315:+1715 None:intergenic
TTTCCCCTTTGTGTTATCCG+CGG 0.666626 tig0001315:+1674 None:intergenic
GGCAGCACATCACAAATCAG+AGG 0.678094 tig0001315:-3019 Msa1336710:five_prime_UTR
CTTCCGCGGATAACACAAAG+GGG 0.722706 tig0001315:-1677 Msa1336710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAAAAAAAAAGAAAAAT+GGG + tig0001315:1639-1658 None:intergenic 10.0%
!! TAATGAAAAAAAAAGAAAAA+TGG + tig0001315:1640-1659 None:intergenic 10.0%
!! CTATAATAAAAGATAAAATA+AGG + tig0001315:2376-2395 None:intergenic 10.0%
!! AATGAAAAAAAAAGAAAAAT+GGG + tig0001315:1639-1658 None:intergenic 10.0%
!! TAATGAAAAAAAAAGAAAAA+TGG + tig0001315:1640-1659 None:intergenic 10.0%
!! CTATAATAAAAGATAAAATA+AGG + tig0001315:2376-2395 None:intergenic 10.0%
!!! TTTATTTACTTTTGCTTATT+TGG - tig0001315:2525-2544 Msa1336710:intron 15.0%
!!! TTTATTTACTTTTGCTTATT+TGG - tig0001315:2525-2544 Msa1336710:intron 15.0%
!! ATTTGAAAATAATCACTAGT+CGG + tig0001315:1968-1987 None:intergenic 20.0%
!! TCAAATAAACCAATTCAAAT+AGG + tig0001315:2007-2026 None:intergenic 20.0%
!!! TAAGTTTGTTTCTATAACAA+AGG + tig0001315:2287-2306 None:intergenic 20.0%
!! ATTAAGCTGTTTATAAAAAC+AGG - tig0001315:2319-2338 Msa1336710:intron 20.0%
!! TTAAGCTGTTTATAAAAACA+GGG - tig0001315:2320-2339 Msa1336710:intron 20.0%
!! CTTTCCATAAAATAAGATAT+AGG + tig0001315:2346-2365 None:intergenic 20.0%
!! TAATATCAAGGATACTAATA+CGG - tig0001315:2696-2715 Msa1336710:intron 20.0%
!! AAAGTTTCAAAAATCTAACT+TGG + tig0001315:2826-2845 None:intergenic 20.0%
!! ATTTGAAAATAATCACTAGT+CGG + tig0001315:1968-1987 None:intergenic 20.0%
!! TCAAATAAACCAATTCAAAT+AGG + tig0001315:2007-2026 None:intergenic 20.0%
!!! TAAGTTTGTTTCTATAACAA+AGG + tig0001315:2287-2306 None:intergenic 20.0%
!! ATTAAGCTGTTTATAAAAAC+AGG - tig0001315:2319-2338 Msa1336710:intron 20.0%
!! TTAAGCTGTTTATAAAAACA+GGG - tig0001315:2320-2339 Msa1336710:intron 20.0%
!! CTTTCCATAAAATAAGATAT+AGG + tig0001315:2346-2365 None:intergenic 20.0%
!! TAATATCAAGGATACTAATA+CGG - tig0001315:2696-2715 Msa1336710:intron 20.0%
!! AAAGTTTCAAAAATCTAACT+TGG + tig0001315:2826-2845 None:intergenic 20.0%
!! TTTTGTTAGTCCAAAACAAA+CGG - tig0001315:1339-1358 Msa1336710:three_prime_UTR 25.0%
!! TAAACTATCTCTGAAAAACA+TGG + tig0001315:1716-1735 None:intergenic 25.0%
! AGATTAAAGACTAATCAGTA+GGG + tig0001315:1879-1898 None:intergenic 25.0%
! AAGATTAAAGACTAATCAGT+AGG + tig0001315:1880-1899 None:intergenic 25.0%
! TTTGAAAATAATCACTAGTC+GGG + tig0001315:1967-1986 None:intergenic 25.0%
!! TTTTCATAAGTTCTCTCAAA+CGG + tig0001315:2151-2170 None:intergenic 25.0%
!! TACTTTTGCTTATTTGGAAA+TGG - tig0001315:2531-2550 Msa1336710:intron 25.0%
!!! GTTTTTTTCTATTCCTAGAT+AGG - tig0001315:2798-2817 Msa1336710:CDS 25.0%
!!! TTTGAGTATTGAAACTAGTT+TGG - tig0001315:2914-2933 Msa1336710:CDS 25.0%
! CAGAAAATGAATATTGTCAT+TGG + tig0001315:2955-2974 None:intergenic 25.0%
! AAAAATAATGAAGCAGCAAA+CGG + tig0001315:3057-3076 None:intergenic 25.0%
!! TTTTGTTAGTCCAAAACAAA+CGG - tig0001315:1339-1358 Msa1336710:three_prime_UTR 25.0%
!! TAAACTATCTCTGAAAAACA+TGG + tig0001315:1716-1735 None:intergenic 25.0%
! AGATTAAAGACTAATCAGTA+GGG + tig0001315:1879-1898 None:intergenic 25.0%
! AAGATTAAAGACTAATCAGT+AGG + tig0001315:1880-1899 None:intergenic 25.0%
! TTTGAAAATAATCACTAGTC+GGG + tig0001315:1967-1986 None:intergenic 25.0%
!! TTTTCATAAGTTCTCTCAAA+CGG + tig0001315:2151-2170 None:intergenic 25.0%
!! TACTTTTGCTTATTTGGAAA+TGG - tig0001315:2531-2550 Msa1336710:intron 25.0%
!!! GTTTTTTTCTATTCCTAGAT+AGG - tig0001315:2798-2817 Msa1336710:CDS 25.0%
!!! TTTGAGTATTGAAACTAGTT+TGG - tig0001315:2914-2933 Msa1336710:CDS 25.0%
! CAGAAAATGAATATTGTCAT+TGG + tig0001315:2955-2974 None:intergenic 25.0%
! AAAAATAATGAAGCAGCAAA+CGG + tig0001315:3057-3076 None:intergenic 25.0%
TTTGTTAGTCCAAAACAAAC+GGG - tig0001315:1340-1359 Msa1336710:three_prime_UTR 30.0%
TTTGATGAACTTGGAAATGA+TGG + tig0001315:1589-1608 None:intergenic 30.0%
TCTGAAAAACATGGAAATGA+TGG + tig0001315:1707-1726 None:intergenic 30.0%
ATTAAAGACTAATCAGTAGG+GGG + tig0001315:1877-1896 None:intergenic 30.0%
GATTAAAGACTAATCAGTAG+GGG + tig0001315:1878-1897 None:intergenic 30.0%
TTGAAAATAATCACTAGTCG+GGG + tig0001315:1966-1985 None:intergenic 30.0%
TTGAGAGAACTTATGAAAAC+AGG - tig0001315:2152-2171 Msa1336710:intron 30.0%
!!! AGGGCCTATATCTTATTTTA+TGG - tig0001315:2339-2358 Msa1336710:intron 30.0%
GCTTATTTGGAAATGGTATA+TGG - tig0001315:2538-2557 Msa1336710:intron 30.0%
TATCAAGAAAGACAAGCTTT+GGG - tig0001315:2579-2598 Msa1336710:intron 30.0%
GAAGAAAGGGAAAAAGAAAT+AGG - tig0001315:2756-2775 Msa1336710:intron 30.0%
CTGCATGATAATTTCATGAA+TGG - tig0001315:2871-2890 Msa1336710:CDS 30.0%
AAAATAATGAAGCAGCAAAC+GGG + tig0001315:3056-3075 None:intergenic 30.0%
TTTGTTAGTCCAAAACAAAC+GGG - tig0001315:1340-1359 Msa1336710:three_prime_UTR 30.0%
TTTGATGAACTTGGAAATGA+TGG + tig0001315:1589-1608 None:intergenic 30.0%
TCTGAAAAACATGGAAATGA+TGG + tig0001315:1707-1726 None:intergenic 30.0%
ATTAAAGACTAATCAGTAGG+GGG + tig0001315:1877-1896 None:intergenic 30.0%
GATTAAAGACTAATCAGTAG+GGG + tig0001315:1878-1897 None:intergenic 30.0%
TTGAAAATAATCACTAGTCG+GGG + tig0001315:1966-1985 None:intergenic 30.0%
TTGAGAGAACTTATGAAAAC+AGG - tig0001315:2152-2171 Msa1336710:intron 30.0%
!!! AGGGCCTATATCTTATTTTA+TGG - tig0001315:2339-2358 Msa1336710:intron 30.0%
GCTTATTTGGAAATGGTATA+TGG - tig0001315:2538-2557 Msa1336710:intron 30.0%
TATCAAGAAAGACAAGCTTT+GGG - tig0001315:2579-2598 Msa1336710:intron 30.0%
GAAGAAAGGGAAAAAGAAAT+AGG - tig0001315:2756-2775 Msa1336710:intron 30.0%
CTGCATGATAATTTCATGAA+TGG - tig0001315:2871-2890 Msa1336710:CDS 30.0%
AAAATAATGAAGCAGCAAAC+GGG + tig0001315:3056-3075 None:intergenic 30.0%
! GGAAATGATGGAAGCAATTT+CGG + tig0001315:1577-1596 None:intergenic 35.0%
ACTGTAGAGTTTGATGAACT+TGG + tig0001315:1598-1617 None:intergenic 35.0%
TCATCAAACTCTACAGTTTC+CGG - tig0001315:1601-1620 Msa1336710:three_prime_UTR 35.0%
AAATGGGAAGAATTGAAACC+CGG + tig0001315:1623-1642 None:intergenic 35.0%
GAGAACATTGATCAAACAGT+TGG + tig0001315:1670-1689 None:intergenic 35.0%
AACCATGAGCCTATTTGAAT+TGG - tig0001315:1995-2014 Msa1336710:intron 35.0%
AACCAATTCAAATAGGCTCA+TGG + tig0001315:2000-2019 None:intergenic 35.0%
CAAGTGCTTGTTTCAATACA+TGG + tig0001315:2036-2055 None:intergenic 35.0%
! AGCGATAAGCTCTTTTCATA+AGG + tig0001315:2235-2254 None:intergenic 35.0%
GGATAAACAACTTCATTGAG+TGG + tig0001315:2450-2469 None:intergenic 35.0%
GTATCAAGAAAGACAAGCTT+TGG - tig0001315:2578-2597 Msa1336710:intron 35.0%
! TCTTTTTCCCTTTCTTCTGT+TGG + tig0001315:2753-2772 None:intergenic 35.0%
AGGGAAAAAGAAATAGGAAG+TGG - tig0001315:2762-2781 Msa1336710:intron 35.0%
GAAAAAGAAATAGGAAGTGG+AGG - tig0001315:2765-2784 Msa1336710:intron 35.0%
ATCTAACTTGGTTCCTATCT+AGG + tig0001315:2814-2833 None:intergenic 35.0%
AATATTGTCATTGGACCACA+AGG + tig0001315:2946-2965 None:intergenic 35.0%
! GGAAATGATGGAAGCAATTT+CGG + tig0001315:1577-1596 None:intergenic 35.0%
ACTGTAGAGTTTGATGAACT+TGG + tig0001315:1598-1617 None:intergenic 35.0%
TCATCAAACTCTACAGTTTC+CGG - tig0001315:1601-1620 Msa1336710:three_prime_UTR 35.0%
AAATGGGAAGAATTGAAACC+CGG + tig0001315:1623-1642 None:intergenic 35.0%
GAGAACATTGATCAAACAGT+TGG + tig0001315:1670-1689 None:intergenic 35.0%
AACCATGAGCCTATTTGAAT+TGG - tig0001315:1995-2014 Msa1336710:intron 35.0%
AACCAATTCAAATAGGCTCA+TGG + tig0001315:2000-2019 None:intergenic 35.0%
CAAGTGCTTGTTTCAATACA+TGG + tig0001315:2036-2055 None:intergenic 35.0%
! AGCGATAAGCTCTTTTCATA+AGG + tig0001315:2235-2254 None:intergenic 35.0%
GGATAAACAACTTCATTGAG+TGG + tig0001315:2450-2469 None:intergenic 35.0%
GTATCAAGAAAGACAAGCTT+TGG - tig0001315:2578-2597 Msa1336710:intron 35.0%
! TCTTTTTCCCTTTCTTCTGT+TGG + tig0001315:2753-2772 None:intergenic 35.0%
AGGGAAAAAGAAATAGGAAG+TGG - tig0001315:2762-2781 Msa1336710:intron 35.0%
GAAAAAGAAATAGGAAGTGG+AGG - tig0001315:2765-2784 Msa1336710:intron 35.0%
ATCTAACTTGGTTCCTATCT+AGG + tig0001315:2814-2833 None:intergenic 35.0%
AATATTGTCATTGGACCACA+AGG + tig0001315:2946-2965 None:intergenic 35.0%
GAAGACAAAAATCCAGCAGA+AGG - tig0001315:1406-1425 Msa1336710:three_prime_UTR 40.0%
TTTGCCGACACCCATAATTT+CGG + tig0001315:1490-1509 None:intergenic 40.0%
AGTGAACTCTGCACTTTCAT+GGG - tig0001315:1531-1550 Msa1336710:three_prime_UTR 40.0%
ATTTCGGAACGAGATTGATG+AGG + tig0001315:1561-1580 None:intergenic 40.0%
CATCAAACTCTACAGTTTCC+GGG - tig0001315:1602-1621 Msa1336710:three_prime_UTR 40.0%
TAGCAGTTAGCAGCTATAAG+CGG - tig0001315:1802-1821 Msa1336710:CDS 40.0%
TCACCCACTTAATCACTGAT+AGG - tig0001315:1915-1934 Msa1336710:intron 40.0%
CACCCACTTAATCACTGATA+GGG - tig0001315:1916-1935 Msa1336710:intron 40.0%
GTCCCTATCAGTGATTAAGT+GGG + tig0001315:1921-1940 None:intergenic 40.0%
AGTCCCTATCAGTGATTAAG+TGG + tig0001315:1922-1941 None:intergenic 40.0%
TTGAGTGGTTATAGCACAAG+CGG + tig0001315:2435-2454 None:intergenic 40.0%
CACTCTTACTTAGGCTCATT+TGG + tig0001315:2471-2490 None:intergenic 40.0%
CAATGGCAACACTCTTACTT+AGG + tig0001315:2480-2499 None:intergenic 40.0%
CTTTCACTTTAGTCGCTCAA+TGG + tig0001315:2497-2516 None:intergenic 40.0%
AGCTTGTCTTTCTTGATACC+AGG + tig0001315:2577-2596 None:intergenic 40.0%
AATTTGCAAACACTGTTGCG+TGG - tig0001315:2607-2626 Msa1336710:intron 40.0%
GACAGAATCTTAGCAATCTC+AGG + tig0001315:2652-2671 None:intergenic 40.0%
GATTGCTAAGATTCTGTCTC+CGG - tig0001315:2654-2673 Msa1336710:intron 40.0%
TACTAATACGGATTCTTCCG+CGG - tig0001315:2708-2727 Msa1336710:intron 40.0%
! ATAGCCTGACTAGTTGCAAA+CGG + tig0001315:2990-3009 None:intergenic 40.0%
GAAGACAAAAATCCAGCAGA+AGG - tig0001315:1406-1425 Msa1336710:three_prime_UTR 40.0%
TTTGCCGACACCCATAATTT+CGG + tig0001315:1490-1509 None:intergenic 40.0%
AGTGAACTCTGCACTTTCAT+GGG - tig0001315:1531-1550 Msa1336710:three_prime_UTR 40.0%
ATTTCGGAACGAGATTGATG+AGG + tig0001315:1561-1580 None:intergenic 40.0%
CATCAAACTCTACAGTTTCC+GGG - tig0001315:1602-1621 Msa1336710:three_prime_UTR 40.0%
TAGCAGTTAGCAGCTATAAG+CGG - tig0001315:1802-1821 Msa1336710:CDS 40.0%
TCACCCACTTAATCACTGAT+AGG - tig0001315:1915-1934 Msa1336710:intron 40.0%
CACCCACTTAATCACTGATA+GGG - tig0001315:1916-1935 Msa1336710:intron 40.0%
GTCCCTATCAGTGATTAAGT+GGG + tig0001315:1921-1940 None:intergenic 40.0%
AGTCCCTATCAGTGATTAAG+TGG + tig0001315:1922-1941 None:intergenic 40.0%
TTGAGTGGTTATAGCACAAG+CGG + tig0001315:2435-2454 None:intergenic 40.0%
CACTCTTACTTAGGCTCATT+TGG + tig0001315:2471-2490 None:intergenic 40.0%
CAATGGCAACACTCTTACTT+AGG + tig0001315:2480-2499 None:intergenic 40.0%
CTTTCACTTTAGTCGCTCAA+TGG + tig0001315:2497-2516 None:intergenic 40.0%
AGCTTGTCTTTCTTGATACC+AGG + tig0001315:2577-2596 None:intergenic 40.0%
AATTTGCAAACACTGTTGCG+TGG - tig0001315:2607-2626 Msa1336710:intron 40.0%
GACAGAATCTTAGCAATCTC+AGG + tig0001315:2652-2671 None:intergenic 40.0%
GATTGCTAAGATTCTGTCTC+CGG - tig0001315:2654-2673 Msa1336710:intron 40.0%
TACTAATACGGATTCTTCCG+CGG - tig0001315:2708-2727 Msa1336710:intron 40.0%
! ATAGCCTGACTAGTTGCAAA+CGG + tig0001315:2990-3009 None:intergenic 40.0%
!!! AACTTGGTGCCCGTTTGTTT+TGG + tig0001315:1352-1371 None:intergenic 45.0%
AAAACAAACGGGCACCAAGT+TGG - tig0001315:1351-1370 Msa1336710:three_prime_UTR 45.0%
ATCCAGCAGAAGGATGAATC+CGG - tig0001315:1416-1435 Msa1336710:three_prime_UTR 45.0%
AAAGCCGTCGCCGAAATTAT+GGG - tig0001315:1477-1496 Msa1336710:three_prime_UTR 45.0%
! CATGAAAGTGCAGAGTTCAC+TGG + tig0001315:1532-1551 None:intergenic 45.0%
CAGTGAACTCTGCACTTTCA+TGG - tig0001315:1530-1549 Msa1336710:three_prime_UTR 45.0%
CCTTGATATTAATCGCACCC+TGG + tig0001315:2687-2706 None:intergenic 45.0%
CCAGGGTGCGATTAATATCA+AGG - tig0001315:2684-2703 Msa1336710:intron 45.0%
TTCTTCCGCGGATAACACAA+AGG - tig0001315:2720-2739 Msa1336710:intron 45.0%
TCTTCCGCGGATAACACAAA+GGG - tig0001315:2721-2740 Msa1336710:intron 45.0%
TTTCCCCTTTGTGTTATCCG+CGG + tig0001315:2728-2747 None:intergenic 45.0%
GGAAAGGCCAACAGAAGAAA+GGG - tig0001315:2743-2762 Msa1336710:intron 45.0%
! AAATAGGAAGTGGAGGCATG+TGG - tig0001315:2772-2791 Msa1336710:intron 45.0%
CTAGTTTGGCTATTGCCTTG+TGG - tig0001315:2928-2947 Msa1336710:CDS 45.0%
! TAGCCTGACTAGTTGCAAAC+GGG + tig0001315:2989-3008 None:intergenic 45.0%
!!! AACTTGGTGCCCGTTTGTTT+TGG + tig0001315:1352-1371 None:intergenic 45.0%
AAAACAAACGGGCACCAAGT+TGG - tig0001315:1351-1370 Msa1336710:three_prime_UTR 45.0%
ATCCAGCAGAAGGATGAATC+CGG - tig0001315:1416-1435 Msa1336710:three_prime_UTR 45.0%
AAAGCCGTCGCCGAAATTAT+GGG - tig0001315:1477-1496 Msa1336710:three_prime_UTR 45.0%
! CATGAAAGTGCAGAGTTCAC+TGG + tig0001315:1532-1551 None:intergenic 45.0%
CAGTGAACTCTGCACTTTCA+TGG - tig0001315:1530-1549 Msa1336710:three_prime_UTR 45.0%
CCTTGATATTAATCGCACCC+TGG + tig0001315:2687-2706 None:intergenic 45.0%
CCAGGGTGCGATTAATATCA+AGG - tig0001315:2684-2703 Msa1336710:intron 45.0%
TTCTTCCGCGGATAACACAA+AGG - tig0001315:2720-2739 Msa1336710:intron 45.0%
TCTTCCGCGGATAACACAAA+GGG - tig0001315:2721-2740 Msa1336710:intron 45.0%
TTTCCCCTTTGTGTTATCCG+CGG + tig0001315:2728-2747 None:intergenic 45.0%
GGAAAGGCCAACAGAAGAAA+GGG - tig0001315:2743-2762 Msa1336710:intron 45.0%
! AAATAGGAAGTGGAGGCATG+TGG - tig0001315:2772-2791 Msa1336710:intron 45.0%
CTAGTTTGGCTATTGCCTTG+TGG - tig0001315:2928-2947 Msa1336710:CDS 45.0%
! TAGCCTGACTAGTTGCAAAC+GGG + tig0001315:2989-3008 None:intergenic 45.0%
GGCAGCACATCACAAATCAG+AGG - tig0001315:1380-1399 Msa1336710:three_prime_UTR 50.0%
! ATGAATCCGGCGGGTTTAAC+AGG - tig0001315:1429-1448 Msa1336710:three_prime_UTR 50.0%
! TGAATCCGGCGGGTTTAACA+GGG - tig0001315:1430-1449 Msa1336710:three_prime_UTR 50.0%
CATAATTTCGGCGACGGCTT+TGG + tig0001315:1478-1497 None:intergenic 50.0%
CAAAGCCGTCGCCGAAATTA+TGG - tig0001315:1476-1495 Msa1336710:three_prime_UTR 50.0%
GACACCCATAATTTCGGCGA+CGG + tig0001315:1484-1503 None:intergenic 50.0%
GTCGCCGAAATTATGGGTGT+CGG - tig0001315:1483-1502 Msa1336710:three_prime_UTR 50.0%
! ACTGGTAGCTTTGCGTGTCT+TGG + tig0001315:1514-1533 None:intergenic 50.0%
!! TATGGTGTTGTGCAGAGTCC+TGG - tig0001315:2556-2575 Msa1336710:intron 50.0%
CTTCCGCGGATAACACAAAG+GGG - tig0001315:2722-2741 Msa1336710:intron 50.0%
GCGGATAACACAAAGGGGAA+AGG - tig0001315:2727-2746 Msa1336710:intron 50.0%
GGGAAAGGCCAACAGAAGAA+AGG - tig0001315:2742-2761 Msa1336710:intron 50.0%
TGTCCCGTTTGCAACTAGTC+AGG - tig0001315:2983-3002 Msa1336710:exon 50.0%
GGCAGCACATCACAAATCAG+AGG - tig0001315:1380-1399 Msa1336710:three_prime_UTR 50.0%
! ATGAATCCGGCGGGTTTAAC+AGG - tig0001315:1429-1448 Msa1336710:three_prime_UTR 50.0%
! TGAATCCGGCGGGTTTAACA+GGG - tig0001315:1430-1449 Msa1336710:three_prime_UTR 50.0%
CATAATTTCGGCGACGGCTT+TGG + tig0001315:1478-1497 None:intergenic 50.0%
CAAAGCCGTCGCCGAAATTA+TGG - tig0001315:1476-1495 Msa1336710:three_prime_UTR 50.0%
GACACCCATAATTTCGGCGA+CGG + tig0001315:1484-1503 None:intergenic 50.0%
GTCGCCGAAATTATGGGTGT+CGG - tig0001315:1483-1502 Msa1336710:three_prime_UTR 50.0%
! ACTGGTAGCTTTGCGTGTCT+TGG + tig0001315:1514-1533 None:intergenic 50.0%
!! TATGGTGTTGTGCAGAGTCC+TGG - tig0001315:2556-2575 Msa1336710:intron 50.0%
CTTCCGCGGATAACACAAAG+GGG - tig0001315:2722-2741 Msa1336710:intron 50.0%
GCGGATAACACAAAGGGGAA+AGG - tig0001315:2727-2746 Msa1336710:intron 50.0%
GGGAAAGGCCAACAGAAGAA+AGG - tig0001315:2742-2761 Msa1336710:intron 50.0%
TGTCCCGTTTGCAACTAGTC+AGG - tig0001315:2983-3002 Msa1336710:exon 50.0%
! CGGGCACCAAGTTGGATCAA+CGG - tig0001315:1359-1378 Msa1336710:three_prime_UTR 55.0%
GTGCTGCCGTTGATCCAACT+TGG + tig0001315:1368-1387 None:intergenic 55.0%
CAGCAGAAGGATGAATCCGG+CGG - tig0001315:1419-1438 Msa1336710:three_prime_UTR 55.0%
AGCAGAAGGATGAATCCGGC+GGG - tig0001315:1420-1439 Msa1336710:three_prime_UTR 55.0%
TTGCGTGGCAGAAACAGCGT+TGG - tig0001315:2622-2641 Msa1336710:intron 55.0%
TCTGTCTCCGGAATTCAGCC+AGG - tig0001315:2666-2685 Msa1336710:intron 55.0%
CTGTCTCCGGAATTCAGCCA+GGG - tig0001315:2667-2686 Msa1336710:intron 55.0%
ATCGCACCCTGGCTGAATTC+CGG + tig0001315:2676-2695 None:intergenic 55.0%
! AGGAAGTGGAGGCATGTGGT+TGG - tig0001315:2776-2795 Msa1336710:intron 55.0%
! CGGGCACCAAGTTGGATCAA+CGG - tig0001315:1359-1378 Msa1336710:three_prime_UTR 55.0%
GTGCTGCCGTTGATCCAACT+TGG + tig0001315:1368-1387 None:intergenic 55.0%
CAGCAGAAGGATGAATCCGG+CGG - tig0001315:1419-1438 Msa1336710:three_prime_UTR 55.0%
AGCAGAAGGATGAATCCGGC+GGG - tig0001315:1420-1439 Msa1336710:three_prime_UTR 55.0%
TTGCGTGGCAGAAACAGCGT+TGG - tig0001315:2622-2641 Msa1336710:intron 55.0%
TCTGTCTCCGGAATTCAGCC+AGG - tig0001315:2666-2685 Msa1336710:intron 55.0%
CTGTCTCCGGAATTCAGCCA+GGG - tig0001315:2667-2686 Msa1336710:intron 55.0%
ATCGCACCCTGGCTGAATTC+CGG + tig0001315:2676-2695 None:intergenic 55.0%
! AGGAAGTGGAGGCATGTGGT+TGG - tig0001315:2776-2795 Msa1336710:intron 55.0%
CGCCGGATTCATCCTTCTGC+TGG + tig0001315:1421-1440 None:intergenic 60.0%
CTTCGCCCTGTTAAACCCGC+CGG + tig0001315:1438-1457 None:intergenic 60.0%
! AGGGCGAAGGAGCATGTCGA+CGG - tig0001315:1449-1468 Msa1336710:three_prime_UTR 60.0%
CGCCGGATTCATCCTTCTGC+TGG + tig0001315:1421-1440 None:intergenic 60.0%
CTTCGCCCTGTTAAACCCGC+CGG + tig0001315:1438-1457 None:intergenic 60.0%
! AGGGCGAAGGAGCATGTCGA+CGG - tig0001315:1449-1468 Msa1336710:three_prime_UTR 60.0%
! CGGCGGGTTTAACAGGGCGA+AGG - tig0001315:1436-1455 Msa1336710:three_prime_UTR 65.0%
! CGGCGGGTTTAACAGGGCGA+AGG - tig0001315:1436-1455 Msa1336710:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
tig0001315 gene 1327 3094 1327 ID=Msa1336710;Name=Msa1336710
tig0001315 mRNA 1327 3094 1327 ID=Msa1336710-mRNA-1;Parent=Msa1336710;Name=Msa1336710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=102|1|1|1|1|1|2|317|133
tig0001315 exon 1327 1850 1327 ID=Msa1336710-mRNA-1:exon:847;Parent=Msa1336710-mRNA-1
tig0001315 exon 2798 3094 2798 ID=Msa1336710-mRNA-1:exon:846;Parent=Msa1336710-mRNA-1
tig0001315 five_prime_UTR 2993 3094 2993 ID=Msa1336710-mRNA-1:five_prime_utr;Parent=Msa1336710-mRNA-1
tig0001315 CDS 2798 2992 2798 ID=Msa1336710-mRNA-1:cds;Parent=Msa1336710-mRNA-1
tig0001315 CDS 1644 1850 1644 ID=Msa1336710-mRNA-1:cds;Parent=Msa1336710-mRNA-1
tig0001315 three_prime_UTR 1327 1643 1327 ID=Msa1336710-mRNA-1:three_prime_utr;Parent=Msa1336710-mRNA-1
Gene Sequence

>Msa1336710

ATGAATCCGGCGGGTTTAACAGGGCGAAGGAGCATGTCGACGGTATCCAAAGCCGTCGCCGAAATTATGGGTGTCGGCAAAACCAAGACACGCAAAGCTACCAGTGAACTCTGCACTTTCATGGGCATTCCTCATCAATCTCGTTCCGAAATTGCTTCCATCATTTCCAAGTTCATCAAACTCTACAGTTTCCGGAGTCCTGGTATCAAGAAAGACAAGCTTTGGGAGCAGAATTTGCAAACACTGTTGCGTGGCAGAAACAGCGTTGGTTTTCCTGAGATTGCTAAGATTCTGTCTCCGGAATTCAGCCAGGGTGCGATTAATATCAAGGATACTAATACGGATTCTTCCGCGGATAACACAAAGGGGAAAGGCCAACAGAAGAAAGGGAAAAAGAAATAG

Protein sequence

>Msa1336710

MNPAGLTGRRSMSTVSKAVAEIMGVGKTKTRKATSELCTFMGIPHQSRSEIASIISKFIKLYSFRSPGIKKDKLWEQNLQTLLRGRNSVGFPEIAKILSPEFSQGAINIKDTNTDSSADNTKGKGQQKKGKKK*