AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0551890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0551890 MtrunA17_Chr4g0037241 78.409 88 6 1 3 90 79 153 4.99e-41 132
Msa0551890 MtrunA17_Chr4g0037241 68.539 89 15 1 1 89 1 76 9.14e-34 113
Msa0551890 MtrunA17_Chr5g0444101 78.409 88 6 1 3 90 79 153 4.99e-41 132
Msa0551890 MtrunA17_Chr5g0444101 68.539 89 15 1 1 89 1 76 9.14e-34 113
Msa0551890 MtrunA17_Chr6g0475951 68.539 89 15 1 1 89 1 76 6.81e-35 114
Msa0551890 MtrunA17_Chr7g0266661 68.539 89 15 1 1 89 1 76 1.09e-34 115
Msa0551890 MtrunA17_Chr1g0178381 68.539 89 15 1 1 89 1 76 1.09e-34 115
Msa0551890 MtrunA17_Chr3g0127481 68.539 89 15 1 1 89 1 76 1.09e-34 115
Msa0551890 MtrunA17_Chr5g0413361 68.539 89 15 1 1 89 1 76 4.36e-34 114
Msa0551890 MtrunA17_Chr8g0380181 68.539 89 15 1 1 89 1 76 4.51e-34 114
Msa0551890 MtrunA17_Chr6g0475961 68.539 89 15 1 1 89 4 79 1.30e-33 114
Msa0551890 MtrunA17_Chr6g0475961 68.539 89 15 1 1 89 80 155 1.30e-33 114
Msa0551890 MtrunA17_Chr6g0475961 70.000 50 2 1 1 50 156 192 1.70e-13 62.8
Msa0551890 MtrunA17_Chr7g0274921 68.539 89 15 1 1 89 3 78 3.41e-33 114
Msa0551890 MtrunA17_Chr7g0274921 68.539 89 15 1 1 89 79 154 3.41e-33 114
Msa0551890 MtrunA17_Chr7g0274921 68.539 89 15 1 1 89 155 230 3.41e-33 114
Msa0551890 MtrunA17_Chr1g0181441 68.539 89 15 1 1 89 1 76 4.48e-33 114
Msa0551890 MtrunA17_Chr1g0181441 68.539 89 15 1 1 89 77 152 4.48e-33 114
Msa0551890 MtrunA17_Chr1g0181441 68.539 89 15 1 1 89 153 228 4.48e-33 114
Msa0551890 MtrunA17_Chr4g0041751 68.539 89 15 1 1 89 77 152 5.97e-33 113
Msa0551890 MtrunA17_Chr4g0041751 67.416 89 16 1 1 89 1 76 2.95e-32 112
Msa0551890 MtrunA17_Chr4g0041751 52.809 89 29 1 1 89 153 228 2.46e-20 81.3
Msa0551890 MtrunA17_Chr8g0377821 68.889 90 15 1 1 90 313 389 8.97e-33 116
Msa0551890 MtrunA17_Chr8g0377821 68.539 89 15 1 1 89 9 84 7.87e-32 114
Msa0551890 MtrunA17_Chr8g0377821 68.539 89 15 1 1 89 85 160 7.87e-32 114
Msa0551890 MtrunA17_Chr8g0377821 68.539 89 15 1 1 89 161 236 7.87e-32 114
Msa0551890 MtrunA17_Chr8g0377821 68.539 89 15 1 1 89 237 312 7.87e-32 114
Msa0551890 MtrunA17_Chr4g0046801 68.539 89 15 1 1 89 4 79 1.51e-31 114
Msa0551890 MtrunA17_Chr4g0046801 68.539 89 15 1 1 89 80 155 1.51e-31 114
Msa0551890 MtrunA17_Chr4g0046801 68.539 89 15 1 1 89 156 231 1.51e-31 114
Msa0551890 MtrunA17_Chr4g0046801 68.539 89 15 1 1 89 232 307 1.51e-31 114
Msa0551890 MtrunA17_Chr4g0046801 68.539 89 15 1 1 89 308 383 1.51e-31 114
Msa0551890 MtrunA17_Chr4g0046801 68.539 89 15 1 1 89 384 459 1.51e-31 114
Msa0551890 MtrunA17_Chr4g0041641 68.539 89 15 1 1 89 5 80 1.59e-31 114
Msa0551890 MtrunA17_Chr4g0041641 68.539 89 15 1 1 89 81 156 1.59e-31 114
Msa0551890 MtrunA17_Chr4g0041641 68.539 89 15 1 1 89 157 232 1.59e-31 114
Msa0551890 MtrunA17_Chr4g0041641 68.539 89 15 1 1 89 233 308 1.59e-31 114
Msa0551890 MtrunA17_Chr4g0041641 68.539 89 15 1 1 89 309 384 1.59e-31 114
Msa0551890 MtrunA17_Chr4g0041641 68.539 89 15 1 1 89 385 460 1.59e-31 114
Msa0551890 MtrunA17_Chr8g0342711 68.539 89 15 1 1 89 4 79 2.47e-31 114
Msa0551890 MtrunA17_Chr8g0342711 68.539 89 15 1 1 89 80 155 2.47e-31 114
Msa0551890 MtrunA17_Chr8g0342711 68.539 89 15 1 1 89 156 231 2.47e-31 114
Msa0551890 MtrunA17_Chr8g0342711 68.539 89 15 1 1 89 232 307 2.47e-31 114
Msa0551890 MtrunA17_Chr8g0342711 68.539 89 15 1 1 89 308 383 2.47e-31 114
Msa0551890 MtrunA17_Chr8g0342711 68.539 89 15 1 1 89 384 459 2.47e-31 114
Msa0551890 MtrunA17_Chr8g0342711 68.539 89 15 1 1 89 460 535 2.47e-31 114
Msa0551890 MtrunA17_Chr4g0048591 68.539 89 15 1 1 89 4 79 2.54e-31 114
Msa0551890 MtrunA17_Chr4g0048591 68.539 89 15 1 1 89 80 155 2.54e-31 114
Msa0551890 MtrunA17_Chr4g0048591 68.539 89 15 1 1 89 156 231 2.54e-31 114
Msa0551890 MtrunA17_Chr4g0048591 68.539 89 15 1 1 89 232 307 2.54e-31 114
Msa0551890 MtrunA17_Chr4g0048591 68.539 89 15 1 1 89 384 459 2.54e-31 114
Msa0551890 MtrunA17_Chr4g0048591 68.539 89 15 1 1 89 460 535 2.54e-31 114
Msa0551890 MtrunA17_Chr4g0048591 67.416 89 16 1 1 89 308 383 2.57e-30 111
Msa0551890 MtrunA17_Chr4g0041701 68.539 89 15 1 1 89 1 76 2.66e-31 114
Msa0551890 MtrunA17_Chr4g0041701 68.539 89 15 1 1 89 77 152 2.66e-31 114
Msa0551890 MtrunA17_Chr4g0041701 68.539 89 15 1 1 89 153 228 2.66e-31 114
Msa0551890 MtrunA17_Chr4g0041701 68.539 89 15 1 1 89 229 304 2.66e-31 114
Msa0551890 MtrunA17_Chr4g0041701 68.539 89 15 1 1 89 305 380 2.66e-31 114
Msa0551890 MtrunA17_Chr4g0041701 68.539 89 15 1 1 89 381 456 2.66e-31 114
Msa0551890 MtrunA17_Chr4g0041701 68.539 89 15 1 1 89 457 532 2.66e-31 114
Msa0551890 MtrunA17_Chr4g0046831 68.539 89 15 1 1 89 80 155 3.04e-31 114
Msa0551890 MtrunA17_Chr4g0046831 68.539 89 15 1 1 89 156 231 3.04e-31 114
Msa0551890 MtrunA17_Chr4g0046831 68.539 89 15 1 1 89 232 307 3.04e-31 114
Msa0551890 MtrunA17_Chr4g0046831 68.539 89 15 1 1 89 368 443 3.04e-31 114
Msa0551890 MtrunA17_Chr4g0046831 68.539 89 15 1 1 89 444 519 3.04e-31 114
Msa0551890 MtrunA17_Chr4g0046831 68.539 89 15 1 1 89 520 595 3.04e-31 114
Msa0551890 MtrunA17_Chr4g0046831 68.539 89 15 1 1 89 4 79 3.23e-31 114
Msa0551890 MtrunA17_Chr8g0374171 66.292 89 17 1 1 89 74 149 3.35e-24 89.7
Msa0551890 MtrunA17_Chr8g0374161 71.930 57 3 1 1 57 9 52 3.33e-19 73.6
Msa0551890 MtrunA17_Chr5g0433631 53.571 84 26 1 1 84 266 336 1.50e-18 77.8
Msa0551890 MtrunA17_Chr5g0433721 51.111 90 30 2 1 89 194 270 2.43e-18 76.6
Msa0551890 MtrunA17_Chr1g0169371 48.864 88 32 1 1 88 215 289 1.39e-17 74.7
Msa0551890 MtrunA17_Chr5g0428191 50.000 88 31 1 1 88 241 315 4.70e-17 73.6
Msa0551890 MtrunA17_Chr5g0424981 43.182 88 37 1 1 88 2 76 1.30e-15 65.1
Msa0551890 MtrunA17_Chr5g0433681 42.697 89 37 2 1 88 1 76 1.67e-14 62.4
Msa0551890 MtrunA17_Chr5g0433411 46.512 86 33 1 1 86 267 339 4.38e-14 65.5
Msa0551890 MtrunA17_Chr5g0433661 44.318 88 36 1 1 88 278 352 4.55e-14 65.5
Msa0551890 MtrunA17_Chr2g0298941 42.045 88 38 1 1 88 177 251 2.66e-13 62.8
Msa0551890 MtrunA17_Chr2g0298951 42.045 88 38 2 1 88 236 310 2.86e-13 63.2
Msa0551890 MtrunA17_Chr1g0169401 43.373 83 34 1 7 89 2 71 4.43e-13 58.5
Msa0551890 MtrunA17_Chr5g0433521 38.636 88 41 1 1 88 240 314 8.71e-13 62.0
Msa0551890 MtrunA17_Chr5g0424971 42.045 88 38 1 1 88 252 326 9.82e-13 61.6
Msa0551890 MtrunA17_Chr7g0259431 40.909 88 39 1 1 88 223 297 1.14e-12 61.6
Msa0551890 MtrunA17_Chr4g0003111 37.500 88 42 1 1 88 4 78 5.01e-12 56.2
Msa0551890 MtrunA17_Chr7g0223111 46.591 88 35 2 1 88 267 342 1.67e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0551890 AT1G31340.1 77.011 87 7 1 3 89 79 152 3.34e-39 127
Msa0551890 AT1G31340.1 67.778 90 16 1 1 90 1 77 1.62e-33 113
Msa0551890 AT2G35635.1 75.862 87 8 1 3 89 79 152 3.64e-38 125
Msa0551890 AT2G35635.1 67.778 90 16 1 1 90 1 77 1.19e-33 113
Msa0551890 AT2G36170.1 68.539 89 15 1 1 89 1 76 1.47e-34 115
Msa0551890 AT3G52590.1 68.539 89 15 1 1 89 1 76 1.47e-34 115
Msa0551890 AT1G23410.1 68.539 89 15 1 1 89 1 76 7.06e-34 114
Msa0551890 AT4G05320.7 68.539 89 15 1 1 89 1 76 7.15e-34 114
Msa0551890 AT4G05320.7 68.539 89 15 1 1 89 77 152 7.15e-34 114
Msa0551890 AT4G05050.4 68.539 89 15 1 1 89 1 76 7.15e-34 114
Msa0551890 AT4G05050.4 68.539 89 15 1 1 89 77 152 7.15e-34 114
Msa0551890 AT2G47110.2 68.539 89 15 1 1 89 1 76 1.06e-33 114
Msa0551890 AT2G47110.1 68.539 89 15 1 1 89 1 76 1.06e-33 114
Msa0551890 AT3G62250.1 68.539 89 15 1 1 89 1 76 1.10e-33 114
Msa0551890 AT1G11980.1 65.169 89 18 1 1 89 1 76 1.55e-33 110
Msa0551890 AT4G02890.2 68.539 89 15 1 1 89 1 76 5.05e-33 114
Msa0551890 AT4G02890.2 68.539 89 15 1 1 89 77 152 5.05e-33 114
Msa0551890 AT4G02890.2 68.539 89 15 1 1 89 153 228 5.05e-33 114
Msa0551890 AT4G02890.1 68.539 89 15 1 1 89 1 76 5.05e-33 114
Msa0551890 AT4G02890.1 68.539 89 15 1 1 89 77 152 5.05e-33 114
Msa0551890 AT4G02890.1 68.539 89 15 1 1 89 153 228 5.05e-33 114
Msa0551890 AT4G05050.2 68.539 89 15 1 1 89 1 76 5.05e-33 114
Msa0551890 AT4G05050.2 68.539 89 15 1 1 89 77 152 5.05e-33 114
Msa0551890 AT4G05050.2 68.539 89 15 1 1 89 153 228 5.05e-33 114
Msa0551890 AT4G05050.1 68.539 89 15 1 1 89 1 76 5.05e-33 114
Msa0551890 AT4G05050.1 68.539 89 15 1 1 89 77 152 5.05e-33 114
Msa0551890 AT4G05050.1 68.539 89 15 1 1 89 153 228 5.05e-33 114
Msa0551890 AT4G05050.3 68.539 89 15 1 1 89 1 76 5.05e-33 114
Msa0551890 AT4G05050.3 68.539 89 15 1 1 89 77 152 5.05e-33 114
Msa0551890 AT4G05050.3 68.539 89 15 1 1 89 153 228 5.05e-33 114
Msa0551890 AT1G55060.1 67.416 89 16 1 1 89 77 152 1.37e-32 113
Msa0551890 AT1G55060.1 65.556 90 18 1 1 90 153 229 8.16e-31 108
Msa0551890 AT1G55060.1 59.551 89 23 1 1 89 1 76 8.18e-28 100
Msa0551890 AT5G03240.3 67.778 90 16 1 1 90 229 305 1.88e-32 114
Msa0551890 AT5G03240.3 68.539 89 15 1 1 89 1 76 2.55e-32 114
Msa0551890 AT5G03240.3 68.539 89 15 1 1 89 77 152 2.55e-32 114
Msa0551890 AT5G03240.3 68.539 89 15 1 1 89 153 228 2.55e-32 114
Msa0551890 AT5G03240.2 67.778 90 16 1 1 90 229 305 1.88e-32 114
Msa0551890 AT5G03240.2 68.539 89 15 1 1 89 1 76 2.55e-32 114
Msa0551890 AT5G03240.2 68.539 89 15 1 1 89 77 152 2.55e-32 114
Msa0551890 AT5G03240.2 68.539 89 15 1 1 89 153 228 2.55e-32 114
Msa0551890 AT5G03240.1 67.778 90 16 1 1 90 229 305 1.88e-32 114
Msa0551890 AT5G03240.1 68.539 89 15 1 1 89 1 76 2.55e-32 114
Msa0551890 AT5G03240.1 68.539 89 15 1 1 89 77 152 2.55e-32 114
Msa0551890 AT5G03240.1 68.539 89 15 1 1 89 153 228 2.55e-32 114
Msa0551890 AT5G20620.2 67.778 90 16 1 1 90 229 305 1.88e-32 114
Msa0551890 AT5G20620.2 68.539 89 15 1 1 89 1 76 2.55e-32 114
Msa0551890 AT5G20620.2 68.539 89 15 1 1 89 77 152 2.55e-32 114
Msa0551890 AT5G20620.2 68.539 89 15 1 1 89 153 228 2.55e-32 114
Msa0551890 AT4G05320.5 68.539 89 15 1 1 89 1 76 2.45e-32 114
Msa0551890 AT4G05320.5 68.539 89 15 1 1 89 77 152 2.45e-32 114
Msa0551890 AT4G05320.5 68.539 89 15 1 1 89 153 228 2.45e-32 114
Msa0551890 AT4G05320.5 68.539 89 15 1 1 89 229 304 2.45e-32 114
Msa0551890 AT4G05320.8 68.539 89 15 1 1 89 1 76 2.45e-32 114
Msa0551890 AT4G05320.8 68.539 89 15 1 1 89 77 152 2.45e-32 114
Msa0551890 AT4G05320.8 68.539 89 15 1 1 89 153 228 2.45e-32 114
Msa0551890 AT4G05320.8 68.539 89 15 1 1 89 229 304 2.45e-32 114
Msa0551890 AT4G02890.3 68.539 89 15 1 1 89 1 76 2.45e-32 114
Msa0551890 AT4G02890.3 68.539 89 15 1 1 89 77 152 2.45e-32 114
Msa0551890 AT4G02890.3 68.539 89 15 1 1 89 153 228 2.45e-32 114
Msa0551890 AT4G02890.3 68.539 89 15 1 1 89 229 304 2.45e-32 114
Msa0551890 AT4G02890.4 68.539 89 15 1 1 89 1 76 2.45e-32 114
Msa0551890 AT4G02890.4 68.539 89 15 1 1 89 77 152 2.45e-32 114
Msa0551890 AT4G02890.4 68.539 89 15 1 1 89 153 228 2.45e-32 114
Msa0551890 AT4G02890.4 68.539 89 15 1 1 89 229 304 2.45e-32 114
Msa0551890 AT1G65350.1 68.539 89 15 1 1 89 1 76 3.26e-32 114
Msa0551890 AT1G65350.1 67.416 89 16 1 1 89 152 227 3.69e-31 111
Msa0551890 AT1G65350.1 67.416 89 15 2 1 89 77 151 3.24e-29 106
Msa0551890 AT1G65350.1 55.769 104 19 2 1 90 228 318 1.90e-25 96.7
Msa0551890 AT5G37640.1 67.416 89 16 1 1 89 79 154 5.14e-32 114
Msa0551890 AT5G37640.1 62.921 89 20 1 1 89 155 230 4.75e-28 103
Msa0551890 AT5G37640.1 63.333 90 19 2 1 89 231 307 4.44e-26 98.2
Msa0551890 AT5G37640.1 53.933 89 28 1 1 89 3 78 2.84e-21 85.5
Msa0551890 AT5G20620.1 67.778 90 16 1 1 90 305 381 6.43e-32 114
Msa0551890 AT5G20620.1 68.539 89 15 1 1 89 1 76 8.71e-32 114
Msa0551890 AT5G20620.1 68.539 89 15 1 1 89 77 152 8.71e-32 114
Msa0551890 AT5G20620.1 68.539 89 15 1 1 89 153 228 8.71e-32 114
Msa0551890 AT5G20620.1 68.539 89 15 1 1 89 229 304 8.71e-32 114
Msa0551890 AT4G05320.1 68.539 89 15 1 1 89 1 76 8.95e-32 114
Msa0551890 AT4G05320.1 68.539 89 15 1 1 89 77 152 8.95e-32 114
Msa0551890 AT4G05320.1 68.539 89 15 1 1 89 153 228 8.95e-32 114
Msa0551890 AT4G05320.1 68.539 89 15 1 1 89 229 304 8.95e-32 114
Msa0551890 AT4G05320.1 68.539 89 15 1 1 89 305 380 8.95e-32 114
Msa0551890 AT4G05320.6 68.539 89 15 1 1 89 1 76 8.95e-32 114
Msa0551890 AT4G05320.6 68.539 89 15 1 1 89 77 152 8.95e-32 114
Msa0551890 AT4G05320.6 68.539 89 15 1 1 89 153 228 8.95e-32 114
Msa0551890 AT4G05320.6 68.539 89 15 1 1 89 229 304 8.95e-32 114
Msa0551890 AT4G05320.6 68.539 89 15 1 1 89 305 380 8.95e-32 114
Msa0551890 AT4G05320.3 68.539 89 15 1 1 89 1 76 8.95e-32 114
Msa0551890 AT4G05320.3 68.539 89 15 1 1 89 77 152 8.95e-32 114
Msa0551890 AT4G05320.3 68.539 89 15 1 1 89 153 228 8.95e-32 114
Msa0551890 AT4G05320.3 68.539 89 15 1 1 89 229 304 8.95e-32 114
Msa0551890 AT4G05320.3 68.539 89 15 1 1 89 305 380 8.95e-32 114
Msa0551890 AT4G05320.2 68.539 89 15 1 1 89 1 76 2.09e-31 114
Msa0551890 AT4G05320.2 68.539 89 15 1 1 89 77 152 2.09e-31 114
Msa0551890 AT4G05320.2 68.539 89 15 1 1 89 153 228 2.09e-31 114
Msa0551890 AT4G05320.2 68.539 89 15 1 1 89 229 304 2.09e-31 114
Msa0551890 AT4G05320.2 68.539 89 15 1 1 89 305 380 2.09e-31 114
Msa0551890 AT4G05320.2 68.539 89 15 1 1 89 381 456 2.09e-31 114
Msa0551890 AT4G05320.4 68.539 89 15 1 1 89 1 76 2.09e-31 114
Msa0551890 AT4G05320.4 68.539 89 15 1 1 89 77 152 2.09e-31 114
Msa0551890 AT4G05320.4 68.539 89 15 1 1 89 153 228 2.09e-31 114
Msa0551890 AT4G05320.4 68.539 89 15 1 1 89 229 304 2.09e-31 114
Msa0551890 AT4G05320.4 68.539 89 15 1 1 89 305 380 2.09e-31 114
Msa0551890 AT4G05320.4 68.539 89 15 1 1 89 381 456 2.09e-31 114
Msa0551890 AT3G09790.2 64.045 89 19 1 1 89 79 154 1.80e-27 104
Msa0551890 AT3G09790.2 58.427 89 24 1 1 89 3 78 1.99e-23 92.8
Msa0551890 AT3G09790.2 56.322 87 25 1 1 87 552 625 5.14e-20 83.2
Msa0551890 AT3G09790.2 48.958 96 29 2 1 89 469 551 1.60e-18 79.0
Msa0551890 AT3G09790.2 50.562 89 31 1 1 89 393 468 7.73e-18 77.0
Msa0551890 AT3G09790.2 51.685 89 28 2 1 87 319 394 1.64e-17 75.9
Msa0551890 AT3G09790.2 48.936 94 30 2 1 89 238 318 6.52e-17 74.3
Msa0551890 AT3G09790.2 46.316 95 31 3 1 88 155 236 3.84e-16 72.0
Msa0551890 AT3G09790.1 64.045 89 19 1 1 89 79 154 1.80e-27 104
Msa0551890 AT3G09790.1 58.427 89 24 1 1 89 3 78 1.99e-23 92.8
Msa0551890 AT3G09790.1 56.322 87 25 1 1 87 552 625 5.14e-20 83.2
Msa0551890 AT3G09790.1 48.958 96 29 2 1 89 469 551 1.60e-18 79.0
Msa0551890 AT3G09790.1 50.562 89 31 1 1 89 393 468 7.73e-18 77.0
Msa0551890 AT3G09790.1 51.685 89 28 2 1 87 319 394 1.64e-17 75.9
Msa0551890 AT3G09790.1 48.936 94 30 2 1 89 238 318 6.52e-17 74.3
Msa0551890 AT3G09790.1 46.316 95 31 3 1 88 155 236 3.84e-16 72.0
Msa0551890 AT1G53930.1 52.326 86 28 1 1 86 86 158 4.15e-22 84.3
Msa0551890 AT1G53950.1 47.727 88 33 1 1 88 69 143 9.26e-18 72.8

Find 46 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTCGTCGTTCTTTCT+TGG 0.186573 4_1:+48140680 None:intergenic
CGATGCGGAGTATGGGTAAT+TGG 0.206513 4_1:+48140766 None:intergenic
CTCGAGAGTGATAGACTTTC+CGG 0.231294 4_1:+48140604 None:intergenic
CTTGGTCACTTTCTAGTTCT+TGG 0.254399 4_1:-48137211 Msa0551890:three_prime_UTR
AGTTTGAGCGATGCGGAGTA+TGG 0.275126 4_1:+48140758 None:intergenic
GAGCTTCCTTTCATGTCTTT+AGG 0.290193 4_1:+48137163 None:intergenic
TATAAATTTGGGGTAACTAT+TGG 0.336842 4_1:-48137090 Msa0551890:three_prime_UTR
TCACTTGGTGCTTGCATTGA+GGG 0.346912 4_1:-48137290 Msa0551890:CDS
AGAGAGAACCTCTGCTGCAC+AGG 0.431937 4_1:+48139398 None:intergenic
TTCACTTGGTGCTTGCATTG+AGG 0.449045 4_1:-48137291 Msa0551890:CDS
TTGAGGGGTGGTAATTAGTA+AGG 0.455140 4_1:-48137274 Msa0551890:exon
GGGTGGTTCTGTGCTTCACT+TGG 0.473264 4_1:-48137305 Msa0551890:CDS
ATCTTCGTCAAAACTTTGAC+CGG 0.482710 4_1:-48140623 Msa0551890:CDS
ATACGATCAATTGTATCAGT+TGG 0.484906 4_1:+48139455 None:intergenic
CACTTGGTGCTTGCATTGAG+GGG 0.485261 4_1:-48137289 Msa0551890:CDS
AACAATTATGTCCTCAGAGA+TGG 0.486416 4_1:+48137131 None:intergenic
GATGCGGAGTATGGGTAATT+GGG 0.487568 4_1:+48140767 None:intergenic
AAATTTGGGGTAACTATTGG+TGG 0.492106 4_1:-48137087 Msa0551890:three_prime_UTR
ACCCTAACTAACCTGGATCT+TGG 0.496140 4_1:+48140547 None:intergenic
CAACGTCAAGGCCAAGATCC+AGG 0.500226 4_1:-48140558 Msa0551890:intron
TGAAGCAACTACCCTGTGGC+GGG 0.503500 4_1:+48140794 None:intergenic
AGAGCGCGATAGAGACAGAA+AGG 0.507710 4_1:+48140710 None:intergenic
GACATTAGCTTGTTTAGACT+TGG 0.510967 4_1:-48137229 Msa0551890:three_prime_UTR
TGCTGCAGGCTCATATATGC+TGG 0.530859 4_1:-48137373 Msa0551890:intron
GAGAACCTCTGCTGCACAGG+TGG 0.536260 4_1:+48139401 None:intergenic
TAGAAACGGAATCCCGCCAC+AGG 0.536418 4_1:-48140806 Msa0551890:five_prime_UTR
CTTGGCCTTGACGTTGTCGA+TGG 0.546175 4_1:+48140565 None:intergenic
ACAAGCTAATGTCTTGAGAT+CGG 0.547092 4_1:+48137239 None:intergenic
GGGGAACTGTTAGATAGAAA+CGG 0.554012 4_1:-48140820 Msa0551890:five_prime_UTR
GTTTGAGCGATGCGGAGTAT+GGG 0.557728 4_1:+48140759 None:intergenic
TGATACAATTGATCGTATCA+AGG 0.564246 4_1:-48139450 Msa0551890:CDS
GCTAAAGAGTACAACATTGA+GGG 0.566179 4_1:-48137325 Msa0551890:CDS
GAATTCCACCTGTGCAGCAG+AGG 0.571422 4_1:-48139406 Msa0551890:intron
AGCTAAAGAGTACAACATTG+AGG 0.583787 4_1:-48137326 Msa0551890:CDS
GAGCGCGATAGAGACAGAAA+GGG 0.587611 4_1:+48140711 None:intergenic
GTTATTTAGTTTGAGCGATG+CGG 0.602160 4_1:+48140751 None:intergenic
TTGGTGCTTGCATTGAGGGG+TGG 0.618700 4_1:-48137286 Msa0551890:CDS
TCTGAACCTAAAGACATGAA+AGG 0.620725 4_1:-48137169 Msa0551890:three_prime_UTR
TTGAAGCAACTACCCTGTGG+CGG 0.632496 4_1:+48140793 None:intergenic
ATTCATAAACAGAAGTACAA+TGG 0.633072 4_1:-48137003 Msa0551890:three_prime_UTR
CGGAAAGTCTATCACTCTCG+AGG 0.653149 4_1:-48140603 Msa0551890:CDS
CGACACCATCGACAACGTCA+AGG 0.661901 4_1:-48140570 Msa0551890:CDS
AGAAACGGAATCCCGCCACA+GGG 0.670011 4_1:-48140805 Msa0551890:five_prime_UTR
AAAGAGTACAACATTGAGGG+TGG 0.697133 4_1:-48137322 Msa0551890:CDS
TCTATGCTCGTCCATCTCTG+AGG 0.699148 4_1:-48137142 Msa0551890:three_prime_UTR
TATTTGAAGCAACTACCCTG+TGG 0.724318 4_1:+48140790 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATATAAATATAAATTGTA+TGG - chr4_1:48138707-48138726 Msa0551890:intron 10.0%
!! TCTCATAATAAAAAAAATTA+TGG + chr4_1:48139563-48139582 None:intergenic 10.0%
!! AATTTAAGAGTTATAACATT+TGG + chr4_1:48138472-48138491 None:intergenic 15.0%
!!! ACTTTTGAATTGAAAATTAT+TGG - chr4_1:48138890-48138909 Msa0551890:intron 15.0%
!! AAATAAATAAATCTCTTAAC+AGG + chr4_1:48139939-48139958 None:intergenic 15.0%
!! GTTAAGAGATTTATTTATTT+AGG - chr4_1:48139939-48139958 Msa0551890:intron 15.0%
!!! ATTATATGCCAGTATTATTT+TGG - chr4_1:48138539-48138558 Msa0551890:intron 20.0%
!! TAAGCATATAAAAGAATGTT+TGG - chr4_1:48138821-48138840 Msa0551890:intron 20.0%
!!! TGCATGAATATTTAACTTAT+AGG + chr4_1:48138851-48138870 None:intergenic 20.0%
!!! TTTTCAATTCAAAAGTCAAA+CGG + chr4_1:48138886-48138905 None:intergenic 20.0%
!!! TTATTTCTCTAATGATTTGT+AGG + chr4_1:48139164-48139183 None:intergenic 20.0%
!! TACAAATCATTAGAGAAATA+AGG - chr4_1:48139163-48139182 Msa0551890:intron 20.0%
!!! TGTTTTTTAAAGTTTAGAAC+AGG + chr4_1:48139352-48139371 None:intergenic 20.0%
!! ATCTATTATTTCACAAACAT+CGG - chr4_1:48139817-48139836 Msa0551890:intron 20.0%
!!! TTATGAAGAGAACTAGTTTT+GGG + chr4_1:48137442-48137461 None:intergenic 25.0%
!!! ATTATGAAGAGAACTAGTTT+TGG + chr4_1:48137443-48137462 None:intergenic 25.0%
!! ATGATATTTAAGAAAAGTGC+TGG + chr4_1:48137602-48137621 None:intergenic 25.0%
! TTAAAAAATAGCACATAGAC+AGG + chr4_1:48137926-48137945 None:intergenic 25.0%
! AGCTTAGTTTCAGTTTATTT+GGG + chr4_1:48138000-48138019 None:intergenic 25.0%
! TAGCTTAGTTTCAGTTTATT+TGG + chr4_1:48138001-48138020 None:intergenic 25.0%
! ACGTCATATAAAACAGATAA+AGG + chr4_1:48138029-48138048 None:intergenic 25.0%
! TAAAGTCTTCACTTTAATCA+TGG + chr4_1:48138290-48138309 None:intergenic 25.0%
! ATTAAAGTGAAGACTTTAAC+TGG - chr4_1:48138292-48138311 Msa0551890:intron 25.0%
! TTTATCTGCCAAAATAATAC+TGG + chr4_1:48138550-48138569 None:intergenic 25.0%
!!! TTTTAAAGCTTACTCATGTA+AGG - chr4_1:48138623-48138642 Msa0551890:intron 25.0%
! CCAAAAATCATATTAAACAG+AGG + chr4_1:48138779-48138798 None:intergenic 25.0%
!! CCTCTGTTTAATATGATTTT+TGG - chr4_1:48138776-48138795 Msa0551890:intron 25.0%
! CATATAAAAGAATGTTTGGA+GGG - chr4_1:48138825-48138844 Msa0551890:intron 25.0%
!! GTATTTCTTGTTTACATAGT+TGG + chr4_1:48139135-48139154 None:intergenic 25.0%
! GTGTAATATGAGTAAATCTA+TGG + chr4_1:48139433-48139452 None:intergenic 25.0%
!! CCTTTTAGTATGATTCTTTT+CGG - chr4_1:48139496-48139515 Msa0551890:intron 25.0%
!! CTTTTAGTATGATTCTTTTC+GGG - chr4_1:48139497-48139516 Msa0551890:intron 25.0%
! TAGCTCAAAAAATTTCAGTT+CGG - chr4_1:48139526-48139545 Msa0551890:intron 25.0%
! TTCAGTTAATTGTTTGAGAA+GGG + chr4_1:48139695-48139714 None:intergenic 25.0%
! TTTCAGTTAATTGTTTGAGA+AGG + chr4_1:48139696-48139715 None:intergenic 25.0%
! GTTTGTGAAATAATAGATAC+TGG + chr4_1:48139815-48139834 None:intergenic 25.0%
!! TTGTATCTTTTGAATATCCA+GGG - chr4_1:48140069-48140088 Msa0551890:intron 25.0%
!! TAATTGTTCTTTTATGTGCT+TGG - chr4_1:48140679-48140698 Msa0551890:five_prime_UTR 25.0%
!!! TGTGCTTGGTTTTATAAATT+TGG - chr4_1:48140693-48140712 Msa0551890:five_prime_UTR 25.0%
!!! GTGCTTGGTTTTATAAATTT+GGG - chr4_1:48140694-48140713 Msa0551890:five_prime_UTR 25.0%
!!! TGCTTGGTTTTATAAATTTG+GGG - chr4_1:48140695-48140714 Msa0551890:five_prime_UTR 25.0%
!! TATAAATTTGGGGTAACTAT+TGG - chr4_1:48140705-48140724 Msa0551890:five_prime_UTR 25.0%
!!! TGATTAAGATACCACTTTTT+GGG + chr4_1:48140757-48140776 None:intergenic 25.0%
!!! TTGATTAAGATACCACTTTT+TGG + chr4_1:48140758-48140777 None:intergenic 25.0%
!! ATTCATAAACAGAAGTACAA+TGG - chr4_1:48140792-48140811 Msa0551890:five_prime_UTR 25.0%
ACTGTTAACTTATGTGTGTT+AGG - chr4_1:48137395-48137414 Msa0551890:intron 30.0%
GAATTGAATATCAGATCGTA+TGG - chr4_1:48137622-48137641 Msa0551890:intron 30.0%
TCTATAAGATTTAGTGATCC+TGG - chr4_1:48137794-48137813 Msa0551890:intron 30.0%
ATAAACTGAAACTAAGCTAC+AGG - chr4_1:48138002-48138021 Msa0551890:intron 30.0%
TAAACTGAAACTAAGCTACA+GGG - chr4_1:48138003-48138022 Msa0551890:intron 30.0%
! TGCTGATTACAACATACAAA+AGG - chr4_1:48138225-48138244 Msa0551890:intron 30.0%
ATACGATCAATTGTATCAGT+TGG + chr4_1:48138343-48138362 None:intergenic 30.0%
TGATACAATTGATCGTATCA+AGG - chr4_1:48138345-48138364 Msa0551890:intron 30.0%
TCCATGCATTTATATGTCAT+TGG - chr4_1:48138581-48138600 Msa0551890:intron 30.0%
ACCAATGACATATAAATGCA+TGG + chr4_1:48138585-48138604 None:intergenic 30.0%
GCATATAAAAGAATGTTTGG+AGG - chr4_1:48138824-48138843 Msa0551890:intron 30.0%
AACTTGATCTCAAATTTCCT+CGG - chr4_1:48138984-48139003 Msa0551890:intron 30.0%
GCACATAGATAGTATTAATG+CGG - chr4_1:48139099-48139118 Msa0551890:intron 30.0%
TCATCAGTTTCAATTCTTTC+TGG - chr4_1:48139279-48139298 Msa0551890:intron 30.0%
!!! TAGAACAGGTTTTGAAAAAC+CGG + chr4_1:48139338-48139357 None:intergenic 30.0%
!!! TACACGACTGGTTTTTTAAA+AGG + chr4_1:48139465-48139484 None:intergenic 30.0%
CCGAAAAGAATCATACTAAA+AGG + chr4_1:48139499-48139518 None:intergenic 30.0%
TCAAAAAATTTCAGTTCGGA+AGG - chr4_1:48139530-48139549 Msa0551890:intron 30.0%
!! TAGCGGATACTAATATTTTG+AGG + chr4_1:48139730-48139749 None:intergenic 30.0%
TTATTTCACAAACATCGGTA+TGG - chr4_1:48139822-48139841 Msa0551890:intron 30.0%
!! ATTTGGTGCTAATTAGAACT+GGG - chr4_1:48140033-48140052 Msa0551890:intron 30.0%
! CTTGTATCTTTTGAATATCC+AGG - chr4_1:48140068-48140087 Msa0551890:intron 30.0%
! ATGCTTTTAAACCCAAAAAG+TGG - chr4_1:48140743-48140762 Msa0551890:five_prime_UTR 30.0%
!! GTTATTTAGTTTGAGCGATG+CGG + chr4_1:48137047-48137066 None:intergenic 35.0%
ATCTTCGTCAAAACTTTGAC+CGG - chr4_1:48137172-48137191 Msa0551890:three_prime_UTR 35.0%
ATAAGAAACCCTAACTAACC+TGG + chr4_1:48137258-48137277 None:intergenic 35.0%
!!! ATTGTGTGCCTTTTAGAGTT+GGG - chr4_1:48137484-48137503 Msa0551890:intron 35.0%
GATCTCTTAGTAATAACGAG+AGG - chr4_1:48137519-48137538 Msa0551890:intron 35.0%
GGGCCATTTATTTCAATATG+CGG - chr4_1:48137554-48137573 Msa0551890:intron 35.0%
GAGCCGCATATTGAAATAAA+TGG + chr4_1:48137560-48137579 None:intergenic 35.0%
!! TGGGTTTTCACGATTTTGAT+CGG + chr4_1:48137678-48137697 None:intergenic 35.0%
GAGTGAAATCACAAAATCGT+GGG + chr4_1:48137697-48137716 None:intergenic 35.0%
TGAGTGAAATCACAAAATCG+TGG + chr4_1:48137698-48137717 None:intergenic 35.0%
ATCGCATGCAAACATGAAAT+CGG - chr4_1:48137755-48137774 Msa0551890:intron 35.0%
AACATAAACAACTCAAAGCC+AGG + chr4_1:48137815-48137834 None:intergenic 35.0%
TTTGTCTGTTAGAGGATAAG+TGG - chr4_1:48138062-48138081 Msa0551890:intron 35.0%
CATTCATTTCTAACTGCTAG+TGG - chr4_1:48138113-48138132 Msa0551890:intron 35.0%
CTAGTGGAATATGTTGTTGT+AGG - chr4_1:48138129-48138148 Msa0551890:intron 35.0%
ATGTTGTTGTAGGACAAAGA+AGG - chr4_1:48138139-48138158 Msa0551890:intron 35.0%
!!! TCTCTCTCTCTCATGTTTTT+TGG - chr4_1:48138429-48138448 Msa0551890:intron 35.0%
!!! CTCTCTCTCTCATGTTTTTT+GGG - chr4_1:48138430-48138449 Msa0551890:intron 35.0%
!! GAGTAAGCTTTAAAAGTGAG+TGG + chr4_1:48138618-48138637 None:intergenic 35.0%
!! GATTTTTGGATGCTTCATCT+AGG - chr4_1:48138790-48138809 Msa0551890:intron 35.0%
TTCAAAAGTCAAACGGTGTA+TGG + chr4_1:48138879-48138898 None:intergenic 35.0%
AAAATCCCTCTTCTCATCAT+AGG + chr4_1:48139198-48139217 None:intergenic 35.0%
! ATGATGAGAAGAGGGATTTT+AGG - chr4_1:48138946-48138965 Msa0551890:intron 35.0%
! TGATGAGAAGAGGGATTTTA+GGG - chr4_1:48138947-48138966 Msa0551890:intron 35.0%
CTAAACCTAGAAACTAGTTC+AGG + chr4_1:48139043-48139062 None:intergenic 35.0%
AGATAGTATTAATGCGGATC+TGG - chr4_1:48139105-48139124 Msa0551890:intron 35.0%
GTTTCAGCTTCATTTCTGTT+TGG - chr4_1:48139301-48139320 Msa0551890:intron 35.0%
ATGGTTGTACTGCAATTCTA+GGG + chr4_1:48139414-48139433 None:intergenic 35.0%
TATGGTTGTACTGCAATTCT+AGG + chr4_1:48139415-48139434 None:intergenic 35.0%
GTTTGAAAACTATACACGAC+TGG + chr4_1:48139477-48139496 None:intergenic 35.0%
! TCATTTTCTCCATCAACTGT+GGG - chr4_1:48139596-48139615 Msa0551890:intron 35.0%
!! ATTGGGAAAAGTGTTGTCTA+CGG + chr4_1:48139636-48139655 None:intergenic 35.0%
CAAACTAGAGGATGCTTATT+GGG + chr4_1:48139653-48139672 None:intergenic 35.0%
TCAAACTAGAGGATGCTTAT+TGG + chr4_1:48139654-48139673 None:intergenic 35.0%
!! TTAGTATCCGCTATTTCTAG+TGG - chr4_1:48139737-48139756 Msa0551890:intron 35.0%
CGAAAGTTATTGTACTCTTC+CGG - chr4_1:48139769-48139788 Msa0551890:intron 35.0%
ATAATGTGTGAAGTCTGTAC+CGG + chr4_1:48139791-48139810 None:intergenic 35.0%
CAATTAAGCTATTCACCTTG+AGG - chr4_1:48139875-48139894 Msa0551890:intron 35.0%
! AGGACAGGGTTAATGTTTTT+GGG - chr4_1:48139895-48139914 Msa0551890:intron 35.0%
TGTATTGCCTATGAATGAAG+AGG - chr4_1:48139994-48140013 Msa0551890:intron 35.0%
GTATTGCCTATGAATGAAGA+GGG - chr4_1:48139995-48140014 Msa0551890:intron 35.0%
!! CATTTGGTGCTAATTAGAAC+TGG - chr4_1:48140032-48140051 Msa0551890:intron 35.0%
CATAAAGTTATGTAGATCCC+TGG + chr4_1:48140089-48140108 None:intergenic 35.0%
! TGCACTGATATGATAGAAAG+CGG + chr4_1:48140135-48140154 None:intergenic 35.0%
TTATACAAGCTTCATCGAGT+TGG - chr4_1:48140182-48140201 Msa0551890:intron 35.0%
GAGTTGGATTGCATATTTAC+TGG - chr4_1:48140198-48140217 Msa0551890:intron 35.0%
TTGATTCTGACGCTTTAATC+TGG - chr4_1:48140270-48140289 Msa0551890:intron 35.0%
!!! ATGTTTTAGCTTTCTTCGCT+AGG - chr4_1:48140325-48140344 Msa0551890:intron 35.0%
! AGCTAAAGAGTACAACATTG+AGG - chr4_1:48140469-48140488 Msa0551890:intron 35.0%
! GCTAAAGAGTACAACATTGA+GGG - chr4_1:48140470-48140489 Msa0551890:intron 35.0%
ACAAGCTAATGTCTTGAGAT+CGG + chr4_1:48140559-48140578 None:intergenic 35.0%
!! GACATTAGCTTGTTTAGACT+TGG - chr4_1:48140566-48140585 Msa0551890:CDS 35.0%
TCTGAACCTAAAGACATGAA+AGG - chr4_1:48140626-48140645 Msa0551890:CDS 35.0%
AACAATTATGTCCTCAGAGA+TGG + chr4_1:48140667-48140686 None:intergenic 35.0%
! AAATTTGGGGTAACTATTGG+TGG - chr4_1:48140708-48140727 Msa0551890:five_prime_UTR 35.0%
! TATTTGAAGCAACTACCCTG+TGG + chr4_1:48137008-48137027 None:intergenic 40.0%
TTCTTCTCGTCGTTCTTTCT+TGG + chr4_1:48137118-48137137 None:intergenic 40.0%
ATCAAAATTTCGCGTCTGCT+AGG - chr4_1:48137333-48137352 Msa0551890:CDS 40.0%
TCAAAATTTCGCGTCTGCTA+GGG - chr4_1:48137334-48137353 Msa0551890:CDS 40.0%
GTGTTAGGTATCACAGAACT+AGG - chr4_1:48137410-48137429 Msa0551890:intron 40.0%
!!! GATTGTGTGCCTTTTAGAGT+TGG - chr4_1:48137483-48137502 Msa0551890:intron 40.0%
!!! TGCCTTTTAGAGTTGGGAAT+GGG - chr4_1:48137490-48137509 Msa0551890:intron 40.0%
TTCCCATTCCCAACTCTAAA+AGG + chr4_1:48137495-48137514 None:intergenic 40.0%
! AACGAGAGGTTATTGCTGTT+TGG - chr4_1:48137533-48137552 Msa0551890:intron 40.0%
!! ACGAGAGGTTATTGCTGTTT+GGG - chr4_1:48137534-48137553 Msa0551890:intron 40.0%
!! GGGTTTTCACGATTTTGATC+GGG + chr4_1:48137677-48137696 None:intergenic 40.0%
! TGTTTGCATGCGATTTTGCA+CGG + chr4_1:48137749-48137768 None:intergenic 40.0%
GCAGTAGCATGGATCAATTA+AGG + chr4_1:48137967-48137986 None:intergenic 40.0%
TCCATGCTACTGCAATAGAT+TGG - chr4_1:48137974-48137993 Msa0551890:intron 40.0%
TGACTGAGTTTGTCTGTTAG+AGG - chr4_1:48138054-48138073 Msa0551890:intron 40.0%
GAGCGTGTTGAAGAAAAAGA+AGG - chr4_1:48138367-48138386 Msa0551890:intron 40.0%
!!! TCTCTCATGTTTTTTGGGCT+TGG - chr4_1:48138435-48138454 Msa0551890:intron 40.0%
CTCATGTAAGGATTTACTCG+AGG - chr4_1:48138635-48138654 Msa0551890:intron 40.0%
TGTTGCCTATGATGAGAAGA+GGG - chr4_1:48138938-48138957 Msa0551890:intron 40.0%
! ACAGAAAGTATGCAAATCCG+AGG + chr4_1:48139004-48139023 None:intergenic 40.0%
! CTCAACCTGAACTAGTTTCT+AGG - chr4_1:48139035-48139054 Msa0551890:intron 40.0%
AATCCCTCTTCTCATCATAG+TGG - chr4_1:48139200-48139219 Msa0551890:intron 40.0%
! CTGTTTGGCTTAGACAAAAC+CGG - chr4_1:48139316-48139335 Msa0551890:intron 40.0%
! CTCATTTTCTCCATCAACTG+TGG - chr4_1:48139595-48139614 Msa0551890:intron 40.0%
! ATCCTCTAGTTTGATCACTG+AGG - chr4_1:48139660-48139679 Msa0551890:intron 40.0%
CATGACACCACTAGAAATAG+CGG + chr4_1:48139747-48139766 None:intergenic 40.0%
!! GCTATTTCTAGTGGTGTCAT+GGG - chr4_1:48139746-48139765 Msa0551890:intron 40.0%
AAACATTAACCCTGTCCTCA+AGG + chr4_1:48139893-48139912 None:intergenic 40.0%
! GAGGACAGGGTTAATGTTTT+TGG - chr4_1:48139894-48139913 Msa0551890:intron 40.0%
!!! ACAGGGTTAATGTTTTTGGG+TGG - chr4_1:48139898-48139917 Msa0551890:intron 40.0%
!!! CAGGGTTAATGTTTTTGGGT+GGG - chr4_1:48139899-48139918 Msa0551890:intron 40.0%
!!! AGGGTTAATGTTTTTGGGTG+GGG - chr4_1:48139900-48139919 Msa0551890:intron 40.0%
TCAATGCCCTCTTCATTCAT+AGG + chr4_1:48140004-48140023 None:intergenic 40.0%
TGCTAATTAGAACTGGGACT+AGG - chr4_1:48140039-48140058 Msa0551890:intron 40.0%
! AAAGAGTACAACATTGAGGG+TGG - chr4_1:48140473-48140492 Msa0551890:intron 40.0%
TTGAGGGGTGGTAATTAGTA+AGG - chr4_1:48140521-48140540 Msa0551890:intron 40.0%
!! CTTGGTCACTTTCTAGTTCT+TGG - chr4_1:48140584-48140603 Msa0551890:CDS 40.0%
GAGCTTCCTTTCATGTCTTT+AGG + chr4_1:48140635-48140654 None:intergenic 40.0%
GATGCGGAGTATGGGTAATT+GGG + chr4_1:48137031-48137050 None:intergenic 45.0%
CTCGAGAGTGATAGACTTTC+CGG + chr4_1:48137194-48137213 None:intergenic 45.0%
! GCCAAGATCCAGGTTAGTTA+GGG - chr4_1:48137247-48137266 Msa0551890:three_prime_UTR 45.0%
ACCCTAACTAACCTGGATCT+TGG + chr4_1:48137251-48137270 None:intergenic 45.0%
!!! GTGCCTTTTAGAGTTGGGAA+TGG - chr4_1:48137489-48137508 Msa0551890:intron 45.0%
!! AGTGCTGGCTGATGACTATA+AGG + chr4_1:48137587-48137606 None:intergenic 45.0%
!! TGATCGGGATTTTGACAGCA+AGG + chr4_1:48137662-48137681 None:intergenic 45.0%
ACTCAACTCAGCATCAGTAG+CGG + chr4_1:48137721-48137740 None:intergenic 45.0%
GCCAATCTATTGCAGTAGCA+TGG + chr4_1:48137978-48137997 None:intergenic 45.0%
AAAATCAACCTCTGCTGGTC+AGG + chr4_1:48138172-48138191 None:intergenic 45.0%
! GATTTTCGCTGGTAAGCAAC+TGG - chr4_1:48138186-48138205 Msa0551890:intron 45.0%
CAACTCTTCACTTGATCCTG+AGG - chr4_1:48138251-48138270 Msa0551890:intron 45.0%
GTGTTGCCTATGATGAGAAG+AGG - chr4_1:48138937-48138956 Msa0551890:intron 45.0%
CCACCACTATGATGAGAAGA+GGG + chr4_1:48139206-48139225 None:intergenic 45.0%
CCTCTTCTCATCATAGTGGT+GGG - chr4_1:48139204-48139223 Msa0551890:intron 45.0%
TTTGCACCACGATGAATCAG+AGG + chr4_1:48139231-48139250 None:intergenic 45.0%
TTCATCGTGGTGCAAAGCAT+CGG - chr4_1:48139235-48139254 Msa0551890:intron 45.0%
GAAACTGATGAACAACACCG+AGG + chr4_1:48139270-48139289 None:intergenic 45.0%
! GGAGTATTTCCCACAGTTGA+TGG + chr4_1:48139608-48139627 None:intergenic 45.0%
CTCCTCAGTGATCAAACTAG+AGG + chr4_1:48139665-48139684 None:intergenic 45.0%
!! CGCTATTTCTAGTGGTGTCA+TGG - chr4_1:48139745-48139764 Msa0551890:intron 45.0%
AAGCTATTCACCTTGAGGAC+AGG - chr4_1:48139880-48139899 Msa0551890:intron 45.0%
AGCTATTCACCTTGAGGACA+GGG - chr4_1:48139881-48139900 Msa0551890:intron 45.0%
!!! GGGTTAATGTTTTTGGGTGG+GGG - chr4_1:48139901-48139920 Msa0551890:intron 45.0%
!! TGAATGAAGAGGGCATTGAG+AGG - chr4_1:48140005-48140024 Msa0551890:intron 45.0%
!! GAATGAAGAGGGCATTGAGA+GGG - chr4_1:48140006-48140025 Msa0551890:intron 45.0%
!! TTCACTTGGTGCTTGCATTG+AGG - chr4_1:48140504-48140523 Msa0551890:intron 45.0%
!! TCACTTGGTGCTTGCATTGA+GGG - chr4_1:48140505-48140524 Msa0551890:intron 45.0%
!!! TTTTTTTTTCTTAATTATAT+TGG - chr4_1:48140369-48140388 Msa0551890:intron 5.0%
TTGAAGCAACTACCCTGTGG+CGG + chr4_1:48137005-48137024 None:intergenic 50.0%
CGATGCGGAGTATGGGTAAT+TGG + chr4_1:48137032-48137051 None:intergenic 50.0%
GTTTGAGCGATGCGGAGTAT+GGG + chr4_1:48137039-48137058 None:intergenic 50.0%
AGTTTGAGCGATGCGGAGTA+TGG + chr4_1:48137040-48137059 None:intergenic 50.0%
GAGCGCGATAGAGACAGAAA+GGG + chr4_1:48137087-48137106 None:intergenic 50.0%
AGAGCGCGATAGAGACAGAA+AGG + chr4_1:48137088-48137107 None:intergenic 50.0%
CGGAAAGTCTATCACTCTCG+AGG - chr4_1:48137192-48137211 Msa0551890:three_prime_UTR 50.0%
! GGCCAAGATCCAGGTTAGTT+AGG - chr4_1:48137246-48137265 Msa0551890:three_prime_UTR 50.0%
CAGCGAAAATCAACCTCTGC+TGG + chr4_1:48138177-48138196 None:intergenic 50.0%
!! CAGCAGAGGTTGATTTTCGC+TGG - chr4_1:48138175-48138194 Msa0551890:intron 50.0%
GCTGGTAAGCAACTGGAAGA+TGG - chr4_1:48138193-48138212 Msa0551890:intron 50.0%
TTCACTTGATCCTGAGGCTC+AGG - chr4_1:48138257-48138276 Msa0551890:intron 50.0%
TCACTTGATCCTGAGGCTCA+GGG - chr4_1:48138258-48138277 Msa0551890:intron 50.0%
GGATTTACTCGAGGATCACG+TGG - chr4_1:48138644-48138663 Msa0551890:intron 50.0%
CCCTCTTCTCATCATAGTGG+TGG - chr4_1:48139203-48139222 Msa0551890:intron 50.0%
CCCACCACTATGATGAGAAG+AGG + chr4_1:48139207-48139226 None:intergenic 50.0%
! AGCATCGGAGTTCTGTTCCT+CGG - chr4_1:48139250-48139269 Msa0551890:intron 50.0%
!! AAAGTGTTGTCTACGGCGGA+TGG + chr4_1:48139629-48139648 None:intergenic 50.0%
!! GGGAAAAGTGTTGTCTACGG+CGG + chr4_1:48139633-48139652 None:intergenic 50.0%
!! TTGGGTGGGGGAGTATTGAT+AGG - chr4_1:48139913-48139932 Msa0551890:intron 50.0%
! GGCATTGAGAGGGAGTCATT+TGG - chr4_1:48140016-48140035 Msa0551890:intron 50.0%
!! CACCTGTTGTAACTTGCTGC+AGG - chr4_1:48140408-48140427 Msa0551890:intron 50.0%
AGCCTGCAGCAAGTTACAAC+AGG + chr4_1:48140413-48140432 None:intergenic 50.0%
TGCTGCAGGCTCATATATGC+TGG - chr4_1:48140422-48140441 Msa0551890:intron 50.0%
!! CACTTGGTGCTTGCATTGAG+GGG - chr4_1:48140506-48140525 Msa0551890:intron 50.0%
TCTATGCTCGTCCATCTCTG+AGG - chr4_1:48140653-48140672 Msa0551890:five_prime_UTR 50.0%
TAGAAACGGAATCCCGCCAC+AGG - chr4_1:48136989-48137008 Msa0551890:three_prime_UTR 55.0%
AGAAACGGAATCCCGCCACA+GGG - chr4_1:48136990-48137009 Msa0551890:three_prime_UTR 55.0%
TGAAGCAACTACCCTGTGGC+GGG + chr4_1:48137004-48137023 None:intergenic 55.0%
CGACACCATCGACAACGTCA+AGG - chr4_1:48137225-48137244 Msa0551890:three_prime_UTR 55.0%
!! CTTGGCCTTGACGTTGTCGA+TGG + chr4_1:48137233-48137252 None:intergenic 55.0%
CAACGTCAAGGCCAAGATCC+AGG - chr4_1:48137237-48137256 Msa0551890:three_prime_UTR 55.0%
TCAACCTCTGCTGGTCAGGA+GGG + chr4_1:48138168-48138187 None:intergenic 55.0%
ATCAACCTCTGCTGGTCAGG+AGG + chr4_1:48138169-48138188 None:intergenic 55.0%
CACTTGATCCTGAGGCTCAG+GGG - chr4_1:48138259-48138278 Msa0551890:intron 55.0%
GAATTCCACCTGTGCAGCAG+AGG - chr4_1:48138389-48138408 Msa0551890:intron 55.0%
AGAGAGAACCTCTGCTGCAC+AGG + chr4_1:48138400-48138419 None:intergenic 55.0%
ACTCGAGGATCACGTGGTCT+AGG - chr4_1:48138650-48138669 Msa0551890:intron 55.0%
GTGGGTCCTCTGATTCATCG+TGG - chr4_1:48139222-48139241 Msa0551890:intron 55.0%
! GGGTGGTTCTGTGCTTCACT+TGG - chr4_1:48140490-48140509 Msa0551890:intron 55.0%
! TTGGTGCTTGCATTGAGGGG+TGG - chr4_1:48140509-48140528 Msa0551890:intron 55.0%
TTGATCCTGAGGCTCAGGGG+AGG - chr4_1:48138262-48138281 Msa0551890:intron 60.0%
GAGAACCTCTGCTGCACAGG+TGG + chr4_1:48138397-48138416 None:intergenic 60.0%
GCATCCCTCCTGACCAGCAG+AGG - chr4_1:48138161-48138180 Msa0551890:intron 65.0%
TGGTTCCTCCCCTGAGCCTC+AGG + chr4_1:48138270-48138289 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 48136976 48140841 48136976 ID=Msa0551890;Name=Msa0551890
chr4_1 mRNA 48136976 48140841 48136976 ID=Msa0551890-mRNA-1;Parent=Msa0551890;Name=Msa0551890-mRNA-1;_AED=0.18;_eAED=0.18;_QI=190|0.5|0.66|1|1|1|3|303|90
chr4_1 exon 48136976 48137387 48136976 ID=Msa0551890-mRNA-1:exon:13133;Parent=Msa0551890-mRNA-1
chr4_1 exon 48139407 48139477 48139407 ID=Msa0551890-mRNA-1:exon:13132;Parent=Msa0551890-mRNA-1
chr4_1 exon 48140559 48140841 48140559 ID=Msa0551890-mRNA-1:exon:13131;Parent=Msa0551890-mRNA-1
chr4_1 five_prime_UTR 48140652 48140841 48140652 ID=Msa0551890-mRNA-1:five_prime_utr;Parent=Msa0551890-mRNA-1
chr4_1 CDS 48140559 48140651 48140559 ID=Msa0551890-mRNA-1:cds;Parent=Msa0551890-mRNA-1
chr4_1 CDS 48139407 48139477 48139407 ID=Msa0551890-mRNA-1:cds;Parent=Msa0551890-mRNA-1
chr4_1 CDS 48137279 48137387 48137279 ID=Msa0551890-mRNA-1:cds;Parent=Msa0551890-mRNA-1
chr4_1 three_prime_UTR 48136976 48137278 48136976 ID=Msa0551890-mRNA-1:three_prime_utr;Parent=Msa0551890-mRNA-1
Gene Sequence

>Msa0551890

ATGCAGATCTTCGTCAAAACTTTGACCGGAAAGTCTATCACTCTCGAGGTTGAGAGTAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGCCAACTGATACAATTGATCGTATCAAGGAGCGTGTTGAAGAAAAAGAAGGAATTCCACCTGTGCAGCAGAGGCTCATATATGCTGGTAAGCAGCTTGCTGATGACAAAACAGCTAAAGAGTACAACATTGAGGGTGGTTCTGTGCTTCACTTGGTGCTTGCATTGAGGGGTGGTAATTAG
Protein sequence

>Msa0551890

MQIFVKTLTGKSITLEVESSDTIDNVKAKIQPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGN*