Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707470 | XP_003625515.1 | 79.888 | 179 | 0 | 1 | 1 | 179 | 1 | 143 | 8.99e-93 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707470 | sp|O82201|AP4S_ARATH | 72.472 | 178 | 13 | 1 | 1 | 178 | 1 | 142 | 4.99e-88 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707470 | G7L0L8 | 79.888 | 179 | 0 | 1 | 1 | 179 | 1 | 143 | 4.29e-93 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0049790 | Msa0707470 | 0.808707 | 2.713169e-50 | -8.615850e-47 |
| Msa0081520 | Msa0707470 | 0.802949 | 4.401497e-49 | -8.615850e-47 |
| Msa0707470 | Msa1208160 | 0.800249 | 1.574857e-48 | -8.615850e-47 |
| Msa0707470 | Msa1445190 | 0.801525 | 8.640114e-49 | -8.615850e-47 |
| Msa0181230 | Msa0707470 | 0.800332 | 1.514531e-48 | -8.615850e-47 |
| Msa0417880 | Msa0707470 | 0.800679 | 1.286828e-48 | -8.615850e-47 |
| Msa0428240 | Msa0707470 | 0.803016 | 4.263320e-49 | -8.615850e-47 |
| Msa0513160 | Msa0707470 | 0.802157 | 6.410508e-49 | -8.615850e-47 |
| Msa0573380 | Msa0707470 | 0.844069 | 9.496566e-59 | -8.615850e-47 |
| Msa0574890 | Msa0707470 | 0.801150 | 1.031388e-48 | -8.615850e-47 |
| Msa0587940 | Msa0707470 | 0.802448 | 5.584412e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707470 | MtrunA17_Chr7g0263061 | 79.888 | 179 | 0 | 1 | 1 | 179 | 1 | 143 | 8.27e-97 | 276 |
| Msa0707470 | MtrunA17_Chr8g0389621 | 79.888 | 179 | 0 | 1 | 1 | 179 | 1 | 143 | 8.27e-97 | 276 |
| Msa0707470 | MtrunA17_Chr1g0156591 | 37.714 | 175 | 73 | 1 | 3 | 177 | 2 | 140 | 1.19e-31 | 111 |
| Msa0707470 | MtrunA17_Chr5g0448531 | 33.908 | 174 | 79 | 1 | 3 | 176 | 2 | 139 | 2.77e-31 | 110 |
| Msa0707470 | MtrunA17_Chr8g0373311 | 30.435 | 184 | 79 | 4 | 3 | 177 | 2 | 145 | 3.07e-23 | 90.5 |
| Msa0707470 | MtrunA17_Chr5g0440601 | 35.606 | 132 | 49 | 2 | 41 | 172 | 17 | 112 | 2.72e-19 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707470 | AT2G19790.1 | 72.472 | 178 | 13 | 1 | 1 | 178 | 1 | 142 | 5.08e-89 | 257 |
| Msa0707470 | AT1G47830.1 | 38.286 | 175 | 72 | 1 | 3 | 177 | 2 | 140 | 3.41e-32 | 113 |
| Msa0707470 | AT2G17380.1 | 33.714 | 175 | 80 | 1 | 3 | 177 | 2 | 140 | 5.89e-31 | 110 |
| Msa0707470 | AT4G35410.2 | 34.857 | 175 | 78 | 2 | 3 | 177 | 2 | 140 | 1.05e-29 | 107 |
| Msa0707470 | AT3G50860.2 | 32.222 | 180 | 81 | 2 | 3 | 177 | 2 | 145 | 2.37e-27 | 100 |
| Msa0707470 | AT3G50860.1 | 32.222 | 180 | 81 | 2 | 3 | 177 | 2 | 145 | 2.75e-27 | 101 |
| Msa0707470 | AT4G35410.1 | 35.338 | 133 | 50 | 2 | 3 | 135 | 2 | 98 | 4.24e-18 | 75.9 |
Find 31 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAATGAGCTTGCTATTT+TGG | 0.125124 | 4_4:+80780797 | Msa0707470:CDS |
| GAAACCATGGATCGACATTT+TGG | 0.210891 | 4_4:+80780840 | Msa0707470:CDS |
| GGGGATCCGATTCGTGTTAA+TGG | 0.262612 | 4_4:+80779367 | Msa0707470:CDS |
| GAAGAACGACGAACACTTGA+AGG | 0.412781 | 4_4:+80779443 | Msa0707470:CDS |
| GCAACTACAAAATTGTATAT+AGG | 0.416024 | 4_4:+80780407 | Msa0707470:CDS |
| TGTTCACCATTAACACGAAT+CGG | 0.437301 | 4_4:-80779373 | None:intergenic |
| TATCATGTTTCATTTAGAAA+AGG | 0.473226 | 4_4:+80781061 | Msa0707470:CDS |
| ATATTTATCTTCAATGAAAG+TGG | 0.482470 | 4_4:-80780715 | None:intergenic |
| TCTTCAATGAAAGTGGTACA+TGG | 0.497155 | 4_4:-80780708 | None:intergenic |
| TTCATAATACTGAGCAAGAC+GGG | 0.525077 | 4_4:-80779408 | None:intergenic |
| TCTGACTCCTATTCAGCTGA+TGG | 0.529053 | 4_4:+80781148 | Msa0707470:CDS |
| TTCCTGGTTGGAGTTGATGA+CGG | 0.536130 | 4_4:+80780448 | Msa0707470:CDS |
| TTCAATACAGTCAAGCAGAA+AGG | 0.542872 | 4_4:-80781345 | None:intergenic |
| TTGGTTGCAGAAAGAGAAAG+AGG | 0.565774 | 4_4:+80779335 | Msa0707470:five_prime_UTR |
| CGCCGTCATCAACTCCAACC+AGG | 0.570939 | 4_4:-80780450 | None:intergenic |
| CCATGGTTTCGACTAAGAGA+TGG | 0.572456 | 4_4:-80780827 | None:intergenic |
| GGTCATGAATGGTTGTATTG+TGG | 0.573456 | 4_4:+80781106 | Msa0707470:CDS |
| ACACATAAAGCAGCAGTGAC+AGG | 0.577419 | 4_4:-80781236 | None:intergenic |
| CCTCGCCCGTAATGAAAACC+AGG | 0.578527 | 4_4:+80779484 | Msa0707470:CDS |
| GTTGCCAAAATGTCGATCCA+TGG | 0.581731 | 4_4:-80780844 | None:intergenic |
| AAACATCATAAGAGATACAA+AGG | 0.582694 | 4_4:+80781174 | Msa0707470:exon |
| GTGTTAATGGTGAACAAACA+AGG | 0.589164 | 4_4:+80779380 | Msa0707470:CDS |
| CAAGTGAATATAAACTGCAT+CGG | 0.591607 | 4_4:+80781264 | Msa0707470:three_prime_UTR |
| TCTGCAAAATTGTCGACAGA+AGG | 0.592031 | 4_4:-80780779 | None:intergenic |
| AATTGTAACATAGAAATACA+TGG | 0.596701 | 4_4:-80781212 | None:intergenic |
| TTGGAGGAAATGGTCATGAA+TGG | 0.600198 | 4_4:+80781095 | Msa0707470:CDS |
| CCATCTCTTAGTCGAAACCA+TGG | 0.604583 | 4_4:+80780827 | Msa0707470:CDS |
| ATTCATAATACTGAGCAAGA+CGG | 0.623435 | 4_4:-80779409 | None:intergenic |
| TATTTCAGTTGTGTGAGCGT+TGG | 0.633020 | 4_4:+80779316 | None:intergenic |
| TTCGTCGTTCTTCAACAGTG+AGG | 0.697820 | 4_4:-80779433 | None:intergenic |
| GGTTGGAGTTGATGACGGCG+AGG | 0.701215 | 4_4:+80780453 | Msa0707470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAAAATCAATTTGTTT+TGG | - | chr4_4:80779808-80779827 | None:intergenic | 10.0% |
| !!! | AAAATAAAATCAATTTGTTT+TGG | - | chr4_4:80779808-80779827 | None:intergenic | 10.0% |
| !! | ATGAAAATAAAAGAAAAGAA+TGG | - | chr4_4:80779517-80779536 | None:intergenic | 15.0% |
| !!! | GTTTTATTCATAAAGAAAAT+TGG | - | chr4_4:80781297-80781316 | None:intergenic | 15.0% |
| !! | ATGAAAATAAAAGAAAAGAA+TGG | - | chr4_4:80779517-80779536 | None:intergenic | 15.0% |
| !!! | GTTTTATTCATAAAGAAAAT+TGG | - | chr4_4:80781297-80781316 | None:intergenic | 15.0% |
| !!! | TGAATATTTTTACTATAGAC+AGG | + | chr4_4:80779946-80779965 | Msa0707470:intron | 20.0% |
| !! | TGAAATTGGAAAGAAAAAAA+AGG | - | chr4_4:80780085-80780104 | None:intergenic | 20.0% |
| !! | ATTTAAACATGTGATGAAAT+TGG | - | chr4_4:80780099-80780118 | None:intergenic | 20.0% |
| !!! | ATTCTAGTTGATTTATACAA+AGG | + | chr4_4:80780500-80780519 | Msa0707470:intron | 20.0% |
| !! | ATATTTATCTTCAATGAAAG+TGG | - | chr4_4:80780718-80780737 | None:intergenic | 20.0% |
| !! | TATCATGTTTCATTTAGAAA+AGG | + | chr4_4:80781061-80781080 | Msa0707470:CDS | 20.0% |
| !! | AATTGTAACATAGAAATACA+TGG | - | chr4_4:80781215-80781234 | None:intergenic | 20.0% |
| !!! | GCTTTAATTTTTTTTTCTCT+TGG | + | chr4_4:80781386-80781405 | Msa0707470:three_prime_UTR | 20.0% |
| !!! | AATTTTTTTTTCTCTTGGTA+TGG | + | chr4_4:80781391-80781410 | Msa0707470:three_prime_UTR | 20.0% |
| !!! | TGAATATTTTTACTATAGAC+AGG | + | chr4_4:80779946-80779965 | Msa0707470:intron | 20.0% |
| !! | TGAAATTGGAAAGAAAAAAA+AGG | - | chr4_4:80780085-80780104 | None:intergenic | 20.0% |
| !! | ATTTAAACATGTGATGAAAT+TGG | - | chr4_4:80780099-80780118 | None:intergenic | 20.0% |
| !!! | ATTCTAGTTGATTTATACAA+AGG | + | chr4_4:80780500-80780519 | Msa0707470:intron | 20.0% |
| !! | ATATTTATCTTCAATGAAAG+TGG | - | chr4_4:80780718-80780737 | None:intergenic | 20.0% |
| !! | TATCATGTTTCATTTAGAAA+AGG | + | chr4_4:80781061-80781080 | Msa0707470:CDS | 20.0% |
| !! | AATTGTAACATAGAAATACA+TGG | - | chr4_4:80781215-80781234 | None:intergenic | 20.0% |
| !!! | GCTTTAATTTTTTTTTCTCT+TGG | + | chr4_4:80781386-80781405 | Msa0707470:three_prime_UTR | 20.0% |
| !!! | AATTTTTTTTTCTCTTGGTA+TGG | + | chr4_4:80781391-80781410 | Msa0707470:three_prime_UTR | 20.0% |
| ! | AAGAGAAAGAGGAATAAAAA+TGG | + | chr4_4:80779346-80779365 | Msa0707470:exon | 25.0% |
| ! | AGAGAAAGAGGAATAAAAAT+GGG | + | chr4_4:80779347-80779366 | Msa0707470:exon | 25.0% |
| ! | ATTAGGTAAAATTGAAGGTA+AGG | - | chr4_4:80779555-80779574 | None:intergenic | 25.0% |
| ! | TGTGAATTAGGTAAAATTGA+AGG | - | chr4_4:80779560-80779579 | None:intergenic | 25.0% |
| ! | AAACAATGACAATGTGAATT+AGG | - | chr4_4:80779572-80779591 | None:intergenic | 25.0% |
| ! | TGTTTATTATTATTCAACCC+TGG | + | chr4_4:80779587-80779606 | Msa0707470:intron | 25.0% |
| ! | TAAATAAGACATAGATGTCT+TGG | + | chr4_4:80779910-80779929 | Msa0707470:intron | 25.0% |
| !!! | CACTGTGTTATATTTTAGTT+GGG | + | chr4_4:80780057-80780076 | Msa0707470:intron | 25.0% |
| ! | TAGATTATATAATCTGTGAG+TGG | + | chr4_4:80780144-80780163 | Msa0707470:intron | 25.0% |
| ! | TTGAATAATAAAGAATGACG+AGG | - | chr4_4:80780187-80780206 | None:intergenic | 25.0% |
| ! | GCAACTACAAAATTGTATAT+AGG | + | chr4_4:80780407-80780426 | Msa0707470:CDS | 25.0% |
| ! | GGAAGAAAACAATAGAATTA+TGG | - | chr4_4:80780951-80780970 | None:intergenic | 25.0% |
| ! | AGAAACAAAAAATCAGTGTT+TGG | - | chr4_4:80780999-80781018 | None:intergenic | 25.0% |
| !!! | AGAAAAGGTACATTTTATGT+TGG | + | chr4_4:80781076-80781095 | Msa0707470:CDS | 25.0% |
| ! | AAACATCATAAGAGATACAA+AGG | + | chr4_4:80781174-80781193 | Msa0707470:exon | 25.0% |
| ! | AAGAGAAAGAGGAATAAAAA+TGG | + | chr4_4:80779346-80779365 | Msa0707470:exon | 25.0% |
| ! | AGAGAAAGAGGAATAAAAAT+GGG | + | chr4_4:80779347-80779366 | Msa0707470:exon | 25.0% |
| ! | ATTAGGTAAAATTGAAGGTA+AGG | - | chr4_4:80779555-80779574 | None:intergenic | 25.0% |
| ! | TGTGAATTAGGTAAAATTGA+AGG | - | chr4_4:80779560-80779579 | None:intergenic | 25.0% |
| ! | AAACAATGACAATGTGAATT+AGG | - | chr4_4:80779572-80779591 | None:intergenic | 25.0% |
| ! | TGTTTATTATTATTCAACCC+TGG | + | chr4_4:80779587-80779606 | Msa0707470:intron | 25.0% |
| ! | TAAATAAGACATAGATGTCT+TGG | + | chr4_4:80779910-80779929 | Msa0707470:intron | 25.0% |
| !!! | CACTGTGTTATATTTTAGTT+GGG | + | chr4_4:80780057-80780076 | Msa0707470:intron | 25.0% |
| ! | TAGATTATATAATCTGTGAG+TGG | + | chr4_4:80780144-80780163 | Msa0707470:intron | 25.0% |
| ! | TTGAATAATAAAGAATGACG+AGG | - | chr4_4:80780187-80780206 | None:intergenic | 25.0% |
| ! | GCAACTACAAAATTGTATAT+AGG | + | chr4_4:80780407-80780426 | Msa0707470:CDS | 25.0% |
| ! | GGAAGAAAACAATAGAATTA+TGG | - | chr4_4:80780951-80780970 | None:intergenic | 25.0% |
| ! | AGAAACAAAAAATCAGTGTT+TGG | - | chr4_4:80780999-80781018 | None:intergenic | 25.0% |
| !!! | AGAAAAGGTACATTTTATGT+TGG | + | chr4_4:80781076-80781095 | Msa0707470:CDS | 25.0% |
| ! | AAACATCATAAGAGATACAA+AGG | + | chr4_4:80781174-80781193 | Msa0707470:exon | 25.0% |
| GAGAAAGAGGAATAAAAATG+GGG | + | chr4_4:80779348-80779367 | Msa0707470:exon | 30.0% | |
| ATTCATAATACTGAGCAAGA+CGG | - | chr4_4:80779412-80779431 | None:intergenic | 30.0% | |
| !! | AACATACCTGGTTTTCATTA+CGG | - | chr4_4:80779493-80779512 | None:intergenic | 30.0% |
| TTATTATTATTCAACCCTGG+AGG | + | chr4_4:80779590-80779609 | Msa0707470:intron | 30.0% | |
| ! | CATAAACACTTCTGAGAATA+TGG | + | chr4_4:80779688-80779707 | Msa0707470:intron | 30.0% |
| TTTCATAATCTATCATGGAG+AGG | - | chr4_4:80779762-80779781 | None:intergenic | 30.0% | |
| ! | GCTGATTTCATAATCTATCA+TGG | - | chr4_4:80779767-80779786 | None:intergenic | 30.0% |
| TATAGACAGGAGATAATTGT+TGG | + | chr4_4:80779959-80779978 | Msa0707470:intron | 30.0% | |
| CCAACTAAAATATAACACAG+TGG | - | chr4_4:80780059-80780078 | None:intergenic | 30.0% | |
| !!! | CCACTGTGTTATATTTTAGT+TGG | + | chr4_4:80780056-80780075 | Msa0707470:intron | 30.0% |
| TGAGTGGAATGAAATTGAAA+TGG | + | chr4_4:80780160-80780179 | Msa0707470:intron | 30.0% | |
| ATTCTTTATTATTCAACCCG+AGG | + | chr4_4:80780191-80780210 | Msa0707470:intron | 30.0% | |
| AGTAAGAGAAAGTCAAAAGA+TGG | - | chr4_4:80780262-80780281 | None:intergenic | 30.0% | |
| TCTTACTCATATTGATGTGT+TGG | + | chr4_4:80780275-80780294 | Msa0707470:intron | 30.0% | |
| TGGTTTATACCAGAAACATA+AGG | + | chr4_4:80780295-80780314 | Msa0707470:intron | 30.0% | |
| GGTTTATACCAGAAACATAA+GGG | + | chr4_4:80780296-80780315 | Msa0707470:intron | 30.0% | |
| ! | CTAGTTGATTTATACAAAGG+CGG | + | chr4_4:80780503-80780522 | Msa0707470:intron | 30.0% |
| GCATATTGTGTTAAATAGTC+TGG | + | chr4_4:80780543-80780562 | Msa0707470:intron | 30.0% | |
| TTAACAAGACTAAGAACTTC+AGG | - | chr4_4:80780664-80780683 | None:intergenic | 30.0% | |
| AGAATTATGGAAGTAATGTG+AGG | - | chr4_4:80780938-80780957 | None:intergenic | 30.0% | |
| !! | AAAGGTACATTTTATGTTGG+AGG | + | chr4_4:80781079-80781098 | Msa0707470:CDS | 30.0% |
| ! | ACATTTTATGTTGGAGGAAA+TGG | + | chr4_4:80781085-80781104 | Msa0707470:CDS | 30.0% |
| CAAGTGAATATAAACTGCAT+CGG | + | chr4_4:80781264-80781283 | Msa0707470:three_prime_UTR | 30.0% | |
| GAGAAAGAGGAATAAAAATG+GGG | + | chr4_4:80779348-80779367 | Msa0707470:exon | 30.0% | |
| ATTCATAATACTGAGCAAGA+CGG | - | chr4_4:80779412-80779431 | None:intergenic | 30.0% | |
| !! | AACATACCTGGTTTTCATTA+CGG | - | chr4_4:80779493-80779512 | None:intergenic | 30.0% |
| TTATTATTATTCAACCCTGG+AGG | + | chr4_4:80779590-80779609 | Msa0707470:intron | 30.0% | |
| ! | CATAAACACTTCTGAGAATA+TGG | + | chr4_4:80779688-80779707 | Msa0707470:intron | 30.0% |
| TTTCATAATCTATCATGGAG+AGG | - | chr4_4:80779762-80779781 | None:intergenic | 30.0% | |
| ! | GCTGATTTCATAATCTATCA+TGG | - | chr4_4:80779767-80779786 | None:intergenic | 30.0% |
| TATAGACAGGAGATAATTGT+TGG | + | chr4_4:80779959-80779978 | Msa0707470:intron | 30.0% | |
| CCAACTAAAATATAACACAG+TGG | - | chr4_4:80780059-80780078 | None:intergenic | 30.0% | |
| !!! | CCACTGTGTTATATTTTAGT+TGG | + | chr4_4:80780056-80780075 | Msa0707470:intron | 30.0% |
| TGAGTGGAATGAAATTGAAA+TGG | + | chr4_4:80780160-80780179 | Msa0707470:intron | 30.0% | |
| ATTCTTTATTATTCAACCCG+AGG | + | chr4_4:80780191-80780210 | Msa0707470:intron | 30.0% | |
| AGTAAGAGAAAGTCAAAAGA+TGG | - | chr4_4:80780262-80780281 | None:intergenic | 30.0% | |
| TCTTACTCATATTGATGTGT+TGG | + | chr4_4:80780275-80780294 | Msa0707470:intron | 30.0% | |
| TGGTTTATACCAGAAACATA+AGG | + | chr4_4:80780295-80780314 | Msa0707470:intron | 30.0% | |
| GGTTTATACCAGAAACATAA+GGG | + | chr4_4:80780296-80780315 | Msa0707470:intron | 30.0% | |
| ! | CTAGTTGATTTATACAAAGG+CGG | + | chr4_4:80780503-80780522 | Msa0707470:intron | 30.0% |
| GCATATTGTGTTAAATAGTC+TGG | + | chr4_4:80780543-80780562 | Msa0707470:intron | 30.0% | |
| TTAACAAGACTAAGAACTTC+AGG | - | chr4_4:80780664-80780683 | None:intergenic | 30.0% | |
| AGAATTATGGAAGTAATGTG+AGG | - | chr4_4:80780938-80780957 | None:intergenic | 30.0% | |
| !! | AAAGGTACATTTTATGTTGG+AGG | + | chr4_4:80781079-80781098 | Msa0707470:CDS | 30.0% |
| ! | ACATTTTATGTTGGAGGAAA+TGG | + | chr4_4:80781085-80781104 | Msa0707470:CDS | 30.0% |
| CAAGTGAATATAAACTGCAT+CGG | + | chr4_4:80781264-80781283 | Msa0707470:three_prime_UTR | 30.0% | |
| TGTTCACCATTAACACGAAT+CGG | - | chr4_4:80779376-80779395 | None:intergenic | 35.0% | |
| GTGTTAATGGTGAACAAACA+AGG | + | chr4_4:80779380-80779399 | Msa0707470:CDS | 35.0% | |
| TTCATAATACTGAGCAAGAC+GGG | - | chr4_4:80779411-80779430 | None:intergenic | 35.0% | |
| !! | ACATACCTGGTTTTCATTAC+GGG | - | chr4_4:80779492-80779511 | None:intergenic | 35.0% |
| GAAAAGAATGGAAACATACC+TGG | - | chr4_4:80779505-80779524 | None:intergenic | 35.0% | |
| AGGTAAAATTGAAGGTAAGG+AGG | - | chr4_4:80779552-80779571 | None:intergenic | 35.0% | |
| AATCTATCATGGAGAGGTTA+TGG | - | chr4_4:80779756-80779775 | None:intergenic | 35.0% | |
| ! | ATTATTCAACCCGAGGTTTT+AGG | + | chr4_4:80780198-80780217 | Msa0707470:intron | 35.0% |
| AGCAAACTTGAATCCAAAGA+TGG | - | chr4_4:80780224-80780243 | None:intergenic | 35.0% | |
| AAGTCAATCCCTTATGTTTC+TGG | - | chr4_4:80780307-80780326 | None:intergenic | 35.0% | |
| ! | TGGCTGATACATTTTTGTCA+TGG | + | chr4_4:80780361-80780380 | Msa0707470:intron | 35.0% |
| !!! | CTATGCATCTTTGTTTTTCC+TGG | + | chr4_4:80780432-80780451 | Msa0707470:CDS | 35.0% |
| TCTTCAATGAAAGTGGTACA+TGG | - | chr4_4:80780711-80780730 | None:intergenic | 35.0% | |
| TTGAAGCTAAGTTCAGAAGA+TGG | - | chr4_4:80780976-80780995 | None:intergenic | 35.0% | |
| ! | GTTTTATCCATCAGCTGAAT+AGG | - | chr4_4:80781158-80781177 | None:intergenic | 35.0% |
| TTCAATACAGTCAAGCAGAA+AGG | - | chr4_4:80781348-80781367 | None:intergenic | 35.0% | |
| TGTTCACCATTAACACGAAT+CGG | - | chr4_4:80779376-80779395 | None:intergenic | 35.0% | |
| GTGTTAATGGTGAACAAACA+AGG | + | chr4_4:80779380-80779399 | Msa0707470:CDS | 35.0% | |
| TTCATAATACTGAGCAAGAC+GGG | - | chr4_4:80779411-80779430 | None:intergenic | 35.0% | |
| !! | ACATACCTGGTTTTCATTAC+GGG | - | chr4_4:80779492-80779511 | None:intergenic | 35.0% |
| GAAAAGAATGGAAACATACC+TGG | - | chr4_4:80779505-80779524 | None:intergenic | 35.0% | |
| AGGTAAAATTGAAGGTAAGG+AGG | - | chr4_4:80779552-80779571 | None:intergenic | 35.0% | |
| AATCTATCATGGAGAGGTTA+TGG | - | chr4_4:80779756-80779775 | None:intergenic | 35.0% | |
| ! | ATTATTCAACCCGAGGTTTT+AGG | + | chr4_4:80780198-80780217 | Msa0707470:intron | 35.0% |
| AGCAAACTTGAATCCAAAGA+TGG | - | chr4_4:80780224-80780243 | None:intergenic | 35.0% | |
| AAGTCAATCCCTTATGTTTC+TGG | - | chr4_4:80780307-80780326 | None:intergenic | 35.0% | |
| ! | TGGCTGATACATTTTTGTCA+TGG | + | chr4_4:80780361-80780380 | Msa0707470:intron | 35.0% |
| !!! | CTATGCATCTTTGTTTTTCC+TGG | + | chr4_4:80780432-80780451 | Msa0707470:CDS | 35.0% |
| TCTTCAATGAAAGTGGTACA+TGG | - | chr4_4:80780711-80780730 | None:intergenic | 35.0% | |
| TTGAAGCTAAGTTCAGAAGA+TGG | - | chr4_4:80780976-80780995 | None:intergenic | 35.0% | |
| ! | GTTTTATCCATCAGCTGAAT+AGG | - | chr4_4:80781158-80781177 | None:intergenic | 35.0% |
| TTCAATACAGTCAAGCAGAA+AGG | - | chr4_4:80781348-80781367 | None:intergenic | 35.0% | |
| TTGGTTGCAGAAAGAGAAAG+AGG | + | chr4_4:80779335-80779354 | Msa0707470:five_prime_UTR | 40.0% | |
| CAATCTAATTGCTACCTCCA+GGG | - | chr4_4:80779607-80779626 | None:intergenic | 40.0% | |
| TCAATCTAATTGCTACCTCC+AGG | - | chr4_4:80779608-80779627 | None:intergenic | 40.0% | |
| TTTCCTTTCACACCCAGAAT+TGG | + | chr4_4:80779982-80780001 | Msa0707470:intron | 40.0% | |
| TTCCTTTCACACCCAGAATT+GGG | + | chr4_4:80779983-80780002 | Msa0707470:intron | 40.0% | |
| ACTTTCTCTTCCCCAATTCT+GGG | - | chr4_4:80779997-80780016 | None:intergenic | 40.0% | |
| AACTTTCTCTTCCCCAATTC+TGG | - | chr4_4:80779998-80780017 | None:intergenic | 40.0% | |
| AAAAGATGGCCTAAAACCTC+GGG | - | chr4_4:80780248-80780267 | None:intergenic | 40.0% | |
| CAAAAGATGGCCTAAAACCT+CGG | - | chr4_4:80780249-80780268 | None:intergenic | 40.0% | |
| TGTATCAGCCAGATGAATCA+TGG | - | chr4_4:80780352-80780371 | None:intergenic | 40.0% | |
| !!! | GCATCTTTGTTTTTCCTGGT+TGG | + | chr4_4:80780436-80780455 | Msa0707470:CDS | 40.0% |
| AGTGGTCATCACTATGTGAT+CGG | + | chr4_4:80780583-80780602 | Msa0707470:intron | 40.0% | |
| CCAGTTTCTTTAGACAAGCA+AGG | - | chr4_4:80780614-80780633 | None:intergenic | 40.0% | |
| CCTTGCTTGTCTAAAGAAAC+TGG | + | chr4_4:80780611-80780630 | Msa0707470:intron | 40.0% | |
| TCTGCAAAATTGTCGACAGA+AGG | - | chr4_4:80780782-80780801 | None:intergenic | 40.0% | |
| !!! | GCAGAATGAGCTTGCTATTT+TGG | + | chr4_4:80780797-80780816 | Msa0707470:CDS | 40.0% |
| ! | GAAACCATGGATCGACATTT+TGG | + | chr4_4:80780840-80780859 | Msa0707470:CDS | 40.0% |
| AGCTAAGTTCAGAAGATGGA+AGG | - | chr4_4:80780972-80780991 | None:intergenic | 40.0% | |
| TTGGAGGAAATGGTCATGAA+TGG | + | chr4_4:80781095-80781114 | Msa0707470:CDS | 40.0% | |
| GGTCATGAATGGTTGTATTG+TGG | + | chr4_4:80781106-80781125 | Msa0707470:CDS | 40.0% | |
| TTGGTTGCAGAAAGAGAAAG+AGG | + | chr4_4:80779335-80779354 | Msa0707470:five_prime_UTR | 40.0% | |
| CAATCTAATTGCTACCTCCA+GGG | - | chr4_4:80779607-80779626 | None:intergenic | 40.0% | |
| TCAATCTAATTGCTACCTCC+AGG | - | chr4_4:80779608-80779627 | None:intergenic | 40.0% | |
| TTTCCTTTCACACCCAGAAT+TGG | + | chr4_4:80779982-80780001 | Msa0707470:intron | 40.0% | |
| TTCCTTTCACACCCAGAATT+GGG | + | chr4_4:80779983-80780002 | Msa0707470:intron | 40.0% | |
| ACTTTCTCTTCCCCAATTCT+GGG | - | chr4_4:80779997-80780016 | None:intergenic | 40.0% | |
| AACTTTCTCTTCCCCAATTC+TGG | - | chr4_4:80779998-80780017 | None:intergenic | 40.0% | |
| AAAAGATGGCCTAAAACCTC+GGG | - | chr4_4:80780248-80780267 | None:intergenic | 40.0% | |
| CAAAAGATGGCCTAAAACCT+CGG | - | chr4_4:80780249-80780268 | None:intergenic | 40.0% | |
| TGTATCAGCCAGATGAATCA+TGG | - | chr4_4:80780352-80780371 | None:intergenic | 40.0% | |
| !!! | GCATCTTTGTTTTTCCTGGT+TGG | + | chr4_4:80780436-80780455 | Msa0707470:CDS | 40.0% |
| AGTGGTCATCACTATGTGAT+CGG | + | chr4_4:80780583-80780602 | Msa0707470:intron | 40.0% | |
| CCAGTTTCTTTAGACAAGCA+AGG | - | chr4_4:80780614-80780633 | None:intergenic | 40.0% | |
| CCTTGCTTGTCTAAAGAAAC+TGG | + | chr4_4:80780611-80780630 | Msa0707470:intron | 40.0% | |
| TCTGCAAAATTGTCGACAGA+AGG | - | chr4_4:80780782-80780801 | None:intergenic | 40.0% | |
| !!! | GCAGAATGAGCTTGCTATTT+TGG | + | chr4_4:80780797-80780816 | Msa0707470:CDS | 40.0% |
| ! | GAAACCATGGATCGACATTT+TGG | + | chr4_4:80780840-80780859 | Msa0707470:CDS | 40.0% |
| AGCTAAGTTCAGAAGATGGA+AGG | - | chr4_4:80780972-80780991 | None:intergenic | 40.0% | |
| TTGGAGGAAATGGTCATGAA+TGG | + | chr4_4:80781095-80781114 | Msa0707470:CDS | 40.0% | |
| GGTCATGAATGGTTGTATTG+TGG | + | chr4_4:80781106-80781125 | Msa0707470:CDS | 40.0% | |
| TTCGTCGTTCTTCAACAGTG+AGG | - | chr4_4:80779436-80779455 | None:intergenic | 45.0% | |
| GAAGAACGACGAACACTTGA+AGG | + | chr4_4:80779443-80779462 | Msa0707470:CDS | 45.0% | |
| TCCTTTCACACCCAGAATTG+GGG | + | chr4_4:80779984-80780003 | Msa0707470:intron | 45.0% | |
| CAAAGATGGCCTAAAACCTC+GGG | - | chr4_4:80780210-80780229 | None:intergenic | 45.0% | |
| CCAAAGATGGCCTAAAACCT+CGG | - | chr4_4:80780211-80780230 | None:intergenic | 45.0% | |
| !!! | AGTTTGCTACCCGAGGTTTT+AGG | + | chr4_4:80780236-80780255 | Msa0707470:intron | 45.0% |
| TCTGCTCACCATGATTCATC+TGG | + | chr4_4:80780341-80780360 | Msa0707470:intron | 45.0% | |
| !! | TTCCTGGTTGGAGTTGATGA+CGG | + | chr4_4:80780448-80780467 | Msa0707470:CDS | 45.0% |
| GCTTTGATCTTACTGACCAG+TGG | + | chr4_4:80780565-80780584 | Msa0707470:intron | 45.0% | |
| GATCACATAGTGATGACCAC+TGG | - | chr4_4:80780584-80780603 | None:intergenic | 45.0% | |
| CCATGGTTTCGACTAAGAGA+TGG | - | chr4_4:80780830-80780849 | None:intergenic | 45.0% | |
| CCATCTCTTAGTCGAAACCA+TGG | + | chr4_4:80780827-80780846 | Msa0707470:CDS | 45.0% | |
| GTTGCCAAAATGTCGATCCA+TGG | - | chr4_4:80780847-80780866 | None:intergenic | 45.0% | |
| TCTGACTCCTATTCAGCTGA+TGG | + | chr4_4:80781148-80781167 | Msa0707470:CDS | 45.0% | |
| ACACATAAAGCAGCAGTGAC+AGG | - | chr4_4:80781239-80781258 | None:intergenic | 45.0% | |
| TTCGTCGTTCTTCAACAGTG+AGG | - | chr4_4:80779436-80779455 | None:intergenic | 45.0% | |
| GAAGAACGACGAACACTTGA+AGG | + | chr4_4:80779443-80779462 | Msa0707470:CDS | 45.0% | |
| TCCTTTCACACCCAGAATTG+GGG | + | chr4_4:80779984-80780003 | Msa0707470:intron | 45.0% | |
| CAAAGATGGCCTAAAACCTC+GGG | - | chr4_4:80780210-80780229 | None:intergenic | 45.0% | |
| CCAAAGATGGCCTAAAACCT+CGG | - | chr4_4:80780211-80780230 | None:intergenic | 45.0% | |
| !!! | AGTTTGCTACCCGAGGTTTT+AGG | + | chr4_4:80780236-80780255 | Msa0707470:intron | 45.0% |
| TCTGCTCACCATGATTCATC+TGG | + | chr4_4:80780341-80780360 | Msa0707470:intron | 45.0% | |
| !! | TTCCTGGTTGGAGTTGATGA+CGG | + | chr4_4:80780448-80780467 | Msa0707470:CDS | 45.0% |
| GCTTTGATCTTACTGACCAG+TGG | + | chr4_4:80780565-80780584 | Msa0707470:intron | 45.0% | |
| GATCACATAGTGATGACCAC+TGG | - | chr4_4:80780584-80780603 | None:intergenic | 45.0% | |
| CCATGGTTTCGACTAAGAGA+TGG | - | chr4_4:80780830-80780849 | None:intergenic | 45.0% | |
| CCATCTCTTAGTCGAAACCA+TGG | + | chr4_4:80780827-80780846 | Msa0707470:CDS | 45.0% | |
| GTTGCCAAAATGTCGATCCA+TGG | - | chr4_4:80780847-80780866 | None:intergenic | 45.0% | |
| TCTGACTCCTATTCAGCTGA+TGG | + | chr4_4:80781148-80781167 | Msa0707470:CDS | 45.0% | |
| ACACATAAAGCAGCAGTGAC+AGG | - | chr4_4:80781239-80781258 | None:intergenic | 45.0% | |
| ! | GGGGATCCGATTCGTGTTAA+TGG | + | chr4_4:80779367-80779386 | Msa0707470:CDS | 50.0% |
| TCCCCAATTCTGGGTGTGAA+AGG | - | chr4_4:80779988-80780007 | None:intergenic | 50.0% | |
| !!! | CCGAGGTTTTAGGCCATCTT+TGG | + | chr4_4:80780208-80780227 | Msa0707470:intron | 50.0% |
| !! | GGATTCAAGTTTGCTACCCG+AGG | + | chr4_4:80780229-80780248 | Msa0707470:intron | 50.0% |
| !! | GGATCGACATTTTGGCAACG+TGG | + | chr4_4:80780848-80780867 | Msa0707470:CDS | 50.0% |
| ACAGAGACTCTAGTCACAGC+AGG | - | chr4_4:80780879-80780898 | None:intergenic | 50.0% | |
| ! | GGGGATCCGATTCGTGTTAA+TGG | + | chr4_4:80779367-80779386 | Msa0707470:CDS | 50.0% |
| TCCCCAATTCTGGGTGTGAA+AGG | - | chr4_4:80779988-80780007 | None:intergenic | 50.0% | |
| !!! | CCGAGGTTTTAGGCCATCTT+TGG | + | chr4_4:80780208-80780227 | Msa0707470:intron | 50.0% |
| !! | GGATTCAAGTTTGCTACCCG+AGG | + | chr4_4:80780229-80780248 | Msa0707470:intron | 50.0% |
| !! | GGATCGACATTTTGGCAACG+TGG | + | chr4_4:80780848-80780867 | Msa0707470:CDS | 50.0% |
| ACAGAGACTCTAGTCACAGC+AGG | - | chr4_4:80780879-80780898 | None:intergenic | 50.0% | |
| !! | CCTGGTTTTCATTACGGGCG+AGG | - | chr4_4:80779487-80779506 | None:intergenic | 55.0% |
| CCTCGCCCGTAATGAAAACC+AGG | + | chr4_4:80779484-80779503 | Msa0707470:CDS | 55.0% | |
| !! | CCTGGTTTTCATTACGGGCG+AGG | - | chr4_4:80779487-80779506 | None:intergenic | 55.0% |
| CCTCGCCCGTAATGAAAACC+AGG | + | chr4_4:80779484-80779503 | Msa0707470:CDS | 55.0% | |
| CGCCGTCATCAACTCCAACC+AGG | - | chr4_4:80780453-80780472 | None:intergenic | 60.0% | |
| !! | GGTTGGAGTTGATGACGGCG+AGG | + | chr4_4:80780453-80780472 | Msa0707470:CDS | 60.0% |
| CGCCGTCATCAACTCCAACC+AGG | - | chr4_4:80780453-80780472 | None:intergenic | 60.0% | |
| !! | GGTTGGAGTTGATGACGGCG+AGG | + | chr4_4:80780453-80780472 | Msa0707470:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 80779320 | 80781424 | 80779320 | ID=Msa0707470;Name=Msa0707470 |
| chr4_4 | mRNA | 80779320 | 80781424 | 80779320 | ID=Msa0707470-mRNA-1;Parent=Msa0707470;Name=Msa0707470-mRNA-1;_AED=0.11;_eAED=0.11;_QI=45|0.66|0.75|1|0.66|0.75|4|240|179 |
| chr4_4 | exon | 80779320 | 80779505 | 80779320 | ID=Msa0707470-mRNA-1:exon:26341;Parent=Msa0707470-mRNA-1 |
| chr4_4 | exon | 80780388 | 80780474 | 80780388 | ID=Msa0707470-mRNA-1:exon:26342;Parent=Msa0707470-mRNA-1 |
| chr4_4 | exon | 80780693 | 80780869 | 80780693 | ID=Msa0707470-mRNA-1:exon:26343;Parent=Msa0707470-mRNA-1 |
| chr4_4 | exon | 80781050 | 80781424 | 80781050 | ID=Msa0707470-mRNA-1:exon:26344;Parent=Msa0707470-mRNA-1 |
| chr4_4 | five_prime_UTR | 80779320 | 80779364 | 80779320 | ID=Msa0707470-mRNA-1:five_prime_utr;Parent=Msa0707470-mRNA-1 |
| chr4_4 | CDS | 80779365 | 80779505 | 80779365 | ID=Msa0707470-mRNA-1:cds;Parent=Msa0707470-mRNA-1 |
| chr4_4 | CDS | 80780388 | 80780474 | 80780388 | ID=Msa0707470-mRNA-1:cds;Parent=Msa0707470-mRNA-1 |
| chr4_4 | CDS | 80780693 | 80780869 | 80780693 | ID=Msa0707470-mRNA-1:cds;Parent=Msa0707470-mRNA-1 |
| chr4_4 | CDS | 80781050 | 80781184 | 80781050 | ID=Msa0707470-mRNA-1:cds;Parent=Msa0707470-mRNA-1 |
| chr4_4 | three_prime_UTR | 80781185 | 80781424 | 80781185 | ID=Msa0707470-mRNA-1:three_prime_utr;Parent=Msa0707470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
