AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0181230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181230 MtrunA17_Chr1g0203361 97.658 854 19 1 1 854 1 853 0.0 1687
Msa0181230 MtrunA17_Chr8g0386571 37.662 770 396 12 1 698 1 758 9.35e-140 441
Msa0181230 MtrunA17_Chr8g0386571 35.938 192 92 4 691 853 845 1034 2.06e-17 87.4
Msa0181230 MtrunA17_Chr5g0397721 36.386 797 429 14 1 727 1 789 4.84e-136 431
Msa0181230 MtrunA17_Chr5g0397721 72.727 55 15 0 799 853 1007 1061 3.93e-15 80.1
Msa0181230 MtrunA17_Chr3g0115391 27.681 401 219 10 5 342 7 399 6.31e-36 147
Msa0181230 MtrunA17_Chr3g0115391 54.545 55 25 0 798 852 1906 1960 7.49e-11 66.6
Msa0181230 MtrunA17_Chr1g0179821 27.021 470 254 12 1 413 1 438 1.49e-25 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181230 AT5G52280.1 43.407 910 400 20 1 853 1 852 0.0 593
Msa0181230 AT5G41140.1 36.673 998 471 25 1 853 1 982 1.32e-157 486
Msa0181230 AT5G41140.2 36.575 987 480 23 1 853 1 975 3.89e-154 477
Msa0181230 AT1G63300.1 39.130 782 421 16 1 732 1 777 1.90e-138 437
Msa0181230 AT1G22060.2 25.953 682 411 16 5 617 7 663 1.83e-38 156
Msa0181230 AT1G22060.1 25.953 682 411 16 5 617 7 663 1.83e-38 156

Find 173 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGCTCTTGATTGCATTTC+TGG 0.028652 1_4:-69423531 None:intergenic
CATGACTTGAACATGCTTTC+AGG 0.116840 1_4:-69420527 None:intergenic
TGATGCTTTGATTGAGAATT+TGG 0.128846 1_4:+69425231 Msa0181230:three_prime_UTR
CTCAAATTCTGAACTTCTTT+TGG 0.164026 1_4:+69422793 Msa0181230:CDS
TCTTATAAGCTAAACATTAT+TGG 0.177334 1_4:-69420446 None:intergenic
TTCAAGATGGGACTTGTTTA+TGG 0.179533 1_4:+69420921 Msa0181230:CDS
GCCCTTGAAATTTGCAAATT+CGG 0.204924 1_4:+69421241 Msa0181230:CDS
TTCAGGTTGATTAATAAATA+TGG 0.219031 1_4:-69420510 None:intergenic
TGAAAATCAAGTTAAGTCTT+TGG 0.245483 1_4:+69423231 Msa0181230:CDS
TTCAAAAGCAGTTTGGTTCT+TGG 0.250839 1_4:+69425434 Msa0181230:three_prime_UTR
AAAATAGAAACTACTAAAAT+TGG 0.254158 1_4:-69425356 None:intergenic
TATTCGTGTTCCTTTCCTTT+AGG 0.262189 1_4:-69424742 None:intergenic
CCCTTGAAATTTGCAAATTC+GGG 0.262697 1_4:+69421242 Msa0181230:CDS
TTGAATCTGTTAAACTTGTT+AGG 0.276431 1_4:+69420957 Msa0181230:CDS
CAGGGACTCTTCTGCTTGAA+TGG 0.294165 1_4:-69423338 None:intergenic
GATCAAAGCTGTATTCAAAT+TGG 0.298730 1_4:+69420565 Msa0181230:CDS
AATTCTCTATTTCACTATTC+TGG 0.302012 1_4:-69422955 None:intergenic
ACAAAAGAATAAGGAAATAT+TGG 0.304705 1_4:+69422844 Msa0181230:CDS
AAGTCACACTCCTTATTTCT+TGG 0.311739 1_4:-69420299 None:intergenic
CTTGTTAGGGATTCAAAATC+AGG 0.313625 1_4:+69420971 Msa0181230:CDS
TCTCAATCAACCAAGAAATA+AGG 0.316778 1_4:+69420289 Msa0181230:five_prime_UTR
TATTGTGTCTCGTCTTTCTC+AGG 0.325981 1_4:-69423357 None:intergenic
GCAGTCAGCGCAGCAAATTT+TGG 0.329795 1_4:-69425064 None:intergenic
AAAGGAAAGGAACACGAATA+TGG 0.334534 1_4:+69424745 Msa0181230:CDS
GAGTTCTGTCTGAAGCTATA+GGG 0.337641 1_4:-69422242 None:intergenic
GAATGCATTGATGGTATCTT+TGG 0.340165 1_4:+69420850 Msa0181230:CDS
AATGCTAGAACAAAAGAATA+AGG 0.342812 1_4:+69422835 Msa0181230:CDS
AGTTGATGTACAGGATAAAT+AGG 0.345911 1_4:-69425019 None:intergenic
CTGTACTGCCATAGCTCAAT+TGG 0.348542 1_4:-69421920 None:intergenic
TTCTTCAAAATCTGGCTACT+TGG 0.349811 1_4:+69421157 Msa0181230:CDS
TATGATGTTGTAGCCTCATA+TGG 0.360562 1_4:+69425136 Msa0181230:three_prime_UTR
TCAGCATCAGATGGAAGTTT+AGG 0.361910 1_4:+69422347 Msa0181230:CDS
TCAGTCCTGGGGTAGCTTCA+TGG 0.364313 1_4:+69422213 Msa0181230:CDS
TTGTAGGGTTCTTCAAAATC+TGG 0.365525 1_4:+69421149 Msa0181230:intron
TTTGTTCTAGCATTGCTTCA+AGG 0.366988 1_4:-69422826 None:intergenic
TTGTAACCCCTGTATATGTT+TGG 0.372707 1_4:-69424920 None:intergenic
CATTCAATAATTCCTTTGTA+AGG 0.376479 1_4:-69424709 None:intergenic
CAGATGGAAGTTTAGGTGAT+TGG 0.379221 1_4:+69422354 Msa0181230:CDS
TCAAGATGGGACTTGTTTAT+GGG 0.381612 1_4:+69420922 Msa0181230:CDS
GCCTCAACTGTTCCTCTTGG+TGG 0.382303 1_4:-69422269 None:intergenic
TATCGCATCTGAGCAGCTTC+AGG 0.385097 1_4:+69423384 Msa0181230:CDS
CACAAAATCAAGTGCATAAG+AGG 0.388926 1_4:+69422300 Msa0181230:CDS
TGAGTTCTGTCTGAAGCTAT+AGG 0.391702 1_4:-69422243 None:intergenic
GCTTCAGTTAGATGCAATAA+AGG 0.391713 1_4:+69422706 Msa0181230:CDS
GAAGAGGCAGGCAGAATTAT+CGG 0.394976 1_4:+69422475 Msa0181230:CDS
GCGGAACCACAACAGGCTTA+TGG 0.395493 1_4:+69423498 Msa0181230:CDS
GAAGAACTAGAACTCTTTGC+AGG 0.398652 1_4:+69424883 Msa0181230:exon
TGAATCTGTTAAACTTGTTA+GGG 0.399721 1_4:+69420958 Msa0181230:CDS
GGAAACTGAACTGAAAGAAA+TGG 0.401729 1_4:+69424766 Msa0181230:CDS
GTTTCATACCAAACATATAC+AGG 0.407755 1_4:+69424912 Msa0181230:three_prime_UTR
TATTGGATCTATCTTCCAAT+AGG 0.408356 1_4:+69422861 Msa0181230:CDS
CAAGACAAATCAATGGTCTC+AGG 0.409972 1_4:+69422561 Msa0181230:CDS
TTTCTTCTAGTCTCTTCACT+TGG 0.412470 1_4:-69423153 None:intergenic
AATCTTCTGAGATTTCCTAT+TGG 0.412717 1_4:-69422876 None:intergenic
AAACATATATCTCAATTAGA+AGG 0.412778 1_4:+69423799 Msa0181230:CDS
TGTTACTTTCAAAAGCAGTT+TGG 0.414328 1_4:+69425427 Msa0181230:three_prime_UTR
GCCCGAATTTGCAAATTTCA+AGG 0.415467 1_4:-69421243 None:intergenic
GCATCAAATGGCATCAGTCC+TGG 0.418524 1_4:+69422200 Msa0181230:CDS
TGTGTTTCATTTCATTGTGC+TGG 0.418901 1_4:-69423738 None:intergenic
TGCAGAAATGGGGAAGATAA+TGG 0.433442 1_4:+69421861 Msa0181230:intron
CTCATTGTCTCTTGAGGTCA+TGG 0.434335 1_4:-69423896 None:intergenic
ATTATTATTGAAGTTCTGTT+GGG 0.435565 1_4:-69422627 None:intergenic
TTACAGTTGCAACAATGAAA+TGG 0.436006 1_4:-69421015 None:intergenic
TGCAGTGTTGTGTTGTGTTG+TGG 0.436593 1_4:-69420483 None:intergenic
ATGAATTGCGGAACCACAAC+AGG 0.437283 1_4:+69423491 Msa0181230:CDS
ATAAAACAGACTATGTAGTC+TGG 0.441515 1_4:+69425269 Msa0181230:three_prime_UTR
GTCAAATACAGGCTGGTCAA+TGG 0.441874 1_4:+69422322 Msa0181230:CDS
CAGTCCTGGGGTAGCTTCAT+GGG 0.444592 1_4:+69422214 Msa0181230:CDS
GTTGGTTTCCCAACATCATC+TGG 0.444751 1_4:-69420875 None:intergenic
TTGGCCTCAACTGTTCCTCT+TGG 0.447378 1_4:-69422272 None:intergenic
GACTACATGTGGCCCATATG+AGG 0.448512 1_4:-69425149 None:intergenic
TATTATTATTGAAGTTCTGT+TGG 0.451599 1_4:-69422628 None:intergenic
AGAAGAAAAGATAGTGATGC+AGG 0.463135 1_4:+69423168 Msa0181230:CDS
ATCGTCATTGGTCTCCATCA+AGG 0.466927 1_4:+69423204 Msa0181230:CDS
TTCTTCTAGTCTCTTCACTT+GGG 0.467384 1_4:-69423152 None:intergenic
GGAGAAAGAACTGAGAATAC+AGG 0.469997 1_4:+69423252 Msa0181230:CDS
GCTGTACGTAATCTCAAGAA+TGG 0.473934 1_4:+69424857 Msa0181230:CDS
AGAAGCAGAATTAAATGCTA+TGG 0.479810 1_4:+69423837 Msa0181230:CDS
TCAAATACAGGCTGGTCAAT+GGG 0.480928 1_4:+69422323 Msa0181230:CDS
CATCAAATGGCATCAGTCCT+GGG 0.483449 1_4:+69422201 Msa0181230:CDS
ATCAAAATCAGAAATGCATA+AGG 0.483727 1_4:+69423942 Msa0181230:CDS
GAATGAAGTGGCAGTCCTAA+AGG 0.485055 1_4:+69424727 Msa0181230:CDS
ACAAAGGCACAGGGATGAAA+AGG 0.486938 1_4:+69423678 Msa0181230:CDS
ATTCTCAATCAAAGCATCAT+AGG 0.487620 1_4:-69425227 None:intergenic
TCTGAAATTTGCAGAGGTAG+AGG 0.487867 1_4:+69424811 Msa0181230:CDS
GTTACAAGCACTTCGGAAGC+AGG 0.487924 1_4:+69422505 Msa0181230:CDS
AGTTTAGGTGATTGGACAAA+CGG 0.490146 1_4:+69422362 Msa0181230:CDS
GTGAGATTGTTTCTCTGAAG+AGG 0.495168 1_4:+69422459 Msa0181230:CDS
AAATTAATTTGTGACAAAGT+CGG 0.499986 1_4:-69420375 None:intergenic
TCTTCAAAATCTGGCTACTT+GGG 0.505506 1_4:+69421158 Msa0181230:CDS
TAAATTTGAAGATGAACTCC+AGG 0.505676 1_4:+69423279 Msa0181230:CDS
AAGAGACAATGAGGCTGCTA+AGG 0.508811 1_4:+69423906 Msa0181230:CDS
AGCAGCCTCATTGTCTCTTG+AGG 0.509235 1_4:-69423902 None:intergenic
TTGAAGATGCACAAAGGCAC+AGG 0.510046 1_4:+69423668 Msa0181230:CDS
ATTGTGTCTCGTCTTTCTCA+GGG 0.510679 1_4:-69423356 None:intergenic
GCTGTGGAAATTTATAATGA+TGG 0.510768 1_4:+69421885 Msa0181230:CDS
CTTTGGTGCCAGATGATGTT+GGG 0.511310 1_4:+69420867 Msa0181230:CDS
GGTACATTGTCAAGGTAACC+AGG 0.511359 1_4:+69425111 Msa0181230:three_prime_UTR
ACACAGTTTGCAGAAAGAAC+AGG 0.512040 1_4:+69423756 Msa0181230:CDS
TGATGCATCAGATCTACTCT+TGG 0.513932 1_4:-69422183 None:intergenic
TTTCTTCCATAAGCCTGTTG+TGG 0.519288 1_4:-69423504 None:intergenic
AGATCAACATGAATTGAAAG+TGG 0.519867 1_4:+69423564 Msa0181230:CDS
CCCGAATTTGCAAATTTCAA+GGG 0.521489 1_4:-69421242 None:intergenic
AGTAGATCTGATGCATCAAA+TGG 0.522587 1_4:+69422188 Msa0181230:CDS
CTGAAATTTGCAGAGGTAGA+GGG 0.524057 1_4:+69424812 Msa0181230:CDS
AGAAAGACAACAGCTTGTTA+TGG 0.526698 1_4:+69424835 Msa0181230:CDS
TAAATTTGGTTACACCATCC+TGG 0.527114 1_4:-69424968 None:intergenic
AAAGGAATTATTGAATGAAG+TGG 0.532662 1_4:+69424715 Msa0181230:CDS
AGAAATGCAATCAAGAGCTC+AGG 0.533105 1_4:+69423533 Msa0181230:CDS
AGTCTGATATTGATAATACT+AGG 0.533275 1_4:+69422684 Msa0181230:CDS
GAGAAAACCGCTGTTCAAGA+TGG 0.533381 1_4:+69420908 Msa0181230:CDS
ATTGGAATTTCAAGCAACTC+AGG 0.543027 1_4:+69420583 Msa0181230:CDS
GAAAGATTACAGGAGCCTAC+AGG 0.545292 1_4:+69422407 Msa0181230:CDS
GGCTCCTGTAATCTTTCTCT+CGG 0.545598 1_4:-69422401 None:intergenic
GATTGTTTCTCTGAAGAGGC+AGG 0.546222 1_4:+69422463 Msa0181230:CDS
CTGAAAGCATGTTCAAGTCA+TGG 0.552384 1_4:+69420528 Msa0181230:exon
GGAATGGATGCTGCAAGCAC+TGG 0.552828 1_4:+69424478 Msa0181230:CDS
TTACAGGAGCCTACAGGCAA+TGG 0.552874 1_4:+69422413 Msa0181230:CDS
CTCAAGAATAACAGAGGACG+AGG 0.553689 1_4:+69423868 Msa0181230:CDS
GTGGCATTGCCATTGCCTGT+AGG 0.555357 1_4:-69422422 None:intergenic
AGAAAACCGCTGTTCAAGAT+GGG 0.556863 1_4:+69420909 Msa0181230:CDS
ATGATGTTGTAGCCTCATAT+GGG 0.558962 1_4:+69425137 Msa0181230:three_prime_UTR
GTGCATAAGAGGTCAAATAC+AGG 0.566002 1_4:+69422311 Msa0181230:CDS
TACCTTGACAATGTACCATA+CGG 0.568597 1_4:-69425105 None:intergenic
AGTTCTGTCTGAAGCTATAG+GGG 0.571501 1_4:-69422241 None:intergenic
TAATTTGTGACAAAGTCGGT+TGG 0.574688 1_4:-69420371 None:intergenic
TCATCCCATGAAGCTACCCC+AGG 0.575983 1_4:-69422218 None:intergenic
TATCTTATAGAATAGCAACT+TGG 0.578135 1_4:+69422160 Msa0181230:intron
CATGTTACAAAATGAACACT+CGG 0.582030 1_4:+69423099 Msa0181230:CDS
AATTTGCTGCGCTGACTGCA+CGG 0.583309 1_4:+69425068 Msa0181230:three_prime_UTR
TCTTTGGTGCCAGATGATGT+TGG 0.584848 1_4:+69420866 Msa0181230:CDS
GTCCGTATGGTACATTGTCA+AGG 0.587568 1_4:+69425103 Msa0181230:three_prime_UTR
TTGAAACACCAATTGAGCTA+TGG 0.589258 1_4:+69421912 Msa0181230:CDS
TATATCTCAATTAGAAGGAG+AGG 0.593443 1_4:+69423804 Msa0181230:CDS
ACAGGTAACTATTCAGAATG+TGG 0.594916 1_4:+69421725 Msa0181230:intron
CGCATCTGAGCAGCTTCAGG+AGG 0.596198 1_4:+69423387 Msa0181230:CDS
GATAAACATTTGACTACATG+TGG 0.600184 1_4:-69425160 None:intergenic
GTAACTATTCAGAATGTGGA+AGG 0.605000 1_4:+69421729 Msa0181230:CDS
AACATATACAGGGGTTACAA+AGG 0.605528 1_4:+69424923 Msa0181230:three_prime_UTR
AAGTGGCAGTCCTAAAGGAA+AGG 0.605693 1_4:+69424732 Msa0181230:CDS
CTACCTTATTTGCAGAAATG+GGG 0.606617 1_4:+69421851 Msa0181230:intron
AATTTATCAAGACAAATCAA+TGG 0.606801 1_4:+69422554 Msa0181230:CDS
TCGAAGAAGCTGATGAATTG+CGG 0.607639 1_4:+69423479 Msa0181230:CDS
AGGCTACAACATCATACCCC+TGG 0.610084 1_4:-69425129 None:intergenic
TCTTCTTAAGAATGAAAATG+TGG 0.611817 1_4:+69423036 Msa0181230:CDS
GATTAGTCTGAAATTTGCAG+AGG 0.613349 1_4:+69424805 Msa0181230:CDS
GGTTAATGAGTTGAAGAAAG+CGG 0.615136 1_4:-69420350 None:intergenic
TCAATGGGTTCAGCATCAGA+TGG 0.615920 1_4:+69422338 Msa0181230:CDS
AAGACAAATCAATGGTCTCA+GGG 0.617123 1_4:+69422562 Msa0181230:CDS
TTTCATACCAAACATATACA+GGG 0.623324 1_4:+69424913 Msa0181230:three_prime_UTR
GTACATTGTCAAGGTAACCA+GGG 0.625975 1_4:+69425112 Msa0181230:three_prime_UTR
TGGGGAAGATAATGGTGCTG+TGG 0.626676 1_4:+69421869 Msa0181230:CDS
ACAAGTCCCATCTTGAACAG+CGG 0.628267 1_4:-69420915 None:intergenic
ATAAGAGGTCAAATACAGGC+TGG 0.635907 1_4:+69422315 Msa0181230:CDS
AACTAGAGTTACAAGCACTT+CGG 0.636170 1_4:+69422498 Msa0181230:CDS
ACTGGTATTAGCAAGTCTGA+AGG 0.642094 1_4:+69424496 Msa0181230:CDS
TATCATGATTACTACCAGGA+TGG 0.644495 1_4:+69424954 Msa0181230:three_prime_UTR
TGAAGATGCACAAAGGCACA+GGG 0.646468 1_4:+69423669 Msa0181230:CDS
CAGTTTGCAGAAAGAACAGG+TGG 0.646491 1_4:+69423759 Msa0181230:CDS
TGATGCTGAACGCCTTACAA+AGG 0.649461 1_4:+69424697 Msa0181230:CDS
GTATTAGCAAGTCTGAAGGA+AGG 0.654276 1_4:+69424500 Msa0181230:CDS
AAGATATCATGATTACTACC+AGG 0.654676 1_4:+69424950 Msa0181230:three_prime_UTR
CATGACCTCAAGAGACAATG+AGG 0.664100 1_4:+69423897 Msa0181230:CDS
ATCAAATGGCATCAGTCCTG+GGG 0.667145 1_4:+69422202 Msa0181230:CDS
TGGAAGGATATACTGCCGAA+AGG 0.668488 1_4:+69421745 Msa0181230:CDS
CAGAACTCAATGCCACCAAG+AGG 0.670351 1_4:+69422257 Msa0181230:CDS
AAGAAGCTCAAGAATAACAG+AGG 0.670995 1_4:+69423862 Msa0181230:CDS
GCCACCAAGAGGAACAGTTG+AGG 0.674754 1_4:+69422268 Msa0181230:CDS
AAGAACTTGAAGATGCACAA+AGG 0.694127 1_4:+69423662 Msa0181230:CDS
TTCATACCAAACATATACAG+GGG 0.700618 1_4:+69424914 Msa0181230:three_prime_UTR
TACATTGTCAAGGTAACCAG+GGG 0.707139 1_4:+69425113 Msa0181230:three_prime_UTR
GAATTGTTATAAGCAACGCG+AGG 0.741429 1_4:+69422973 Msa0181230:CDS
GCTTATAAAAGAGCTCACAG+TGG 0.747992 1_4:+69423006 Msa0181230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTTTTTTTTTGAG+AGG + chr1_4:69421084-69421103 Msa0181230:intron 10.0%
!!! GTAAATATAATTTTATTCAA+TGG - chr1_4:69422125-69422144 None:intergenic 10.0%
!!! TACAATAACATTTTTTATTT+TGG + chr1_4:69424179-69424198 Msa0181230:intron 10.0%
!! ATCAACAAAATATATTATTA+TGG - chr1_4:69424441-69424460 None:intergenic 10.0%
!!! AAATAATAAAAGTTAGTTTT+TGG - chr1_4:69424656-69424675 None:intergenic 10.0%
!!! AAACTAACTTTTATTATTTT+TGG + chr1_4:69424657-69424676 Msa0181230:intron 10.0%
!!! TTTTTCATTATACAACAATT+AGG - chr1_4:69420672-69420691 None:intergenic 15.0%
!!! GAAAGTTTAAATCTTTTTTA+TGG + chr1_4:69421122-69421141 Msa0181230:intron 15.0%
!!! TGATTTTGTAAAATTGATTA+TGG + chr1_4:69421414-69421433 Msa0181230:intron 15.0%
!! TTAATATCTGATAATAAGTA+TGG - chr1_4:69423982-69424001 None:intergenic 15.0%
!! AAAATAGAAACTACTAAAAT+TGG - chr1_4:69425359-69425378 None:intergenic 15.0%
!!! AAATTAATTTGTGACAAAGT+CGG - chr1_4:69420378-69420397 None:intergenic 20.0%
!! TCTTATAAGCTAAACATTAT+TGG - chr1_4:69420449-69420468 None:intergenic 20.0%
!!! TTCAGGTTGATTAATAAATA+TGG - chr1_4:69420513-69420532 None:intergenic 20.0%
!! TATACTTTCAAATCTGAAAA+TGG + chr1_4:69420639-69420658 Msa0181230:intron 20.0%
!! ATACTTTCAAATCTGAAAAT+GGG + chr1_4:69420640-69420659 Msa0181230:intron 20.0%
!! AGTTTAACAGATTCAAAAAT+TGG - chr1_4:69420953-69420972 None:intergenic 20.0%
!! AATTTATCAAGACAAATCAA+TGG + chr1_4:69422554-69422573 Msa0181230:CDS 20.0%
!! ATTATTATTGAAGTTCTGTT+GGG - chr1_4:69422630-69422649 None:intergenic 20.0%
!! TATTATTATTGAAGTTCTGT+TGG - chr1_4:69422631-69422650 None:intergenic 20.0%
!! ACAAAAGAATAAGGAAATAT+TGG + chr1_4:69422844-69422863 Msa0181230:CDS 20.0%
!! AAGTACAAAAGAAAAAACAA+TGG + chr1_4:69423606-69423625 Msa0181230:CDS 20.0%
!! AAACATATATCTCAATTAGA+AGG + chr1_4:69423799-69423818 Msa0181230:CDS 20.0%
!! AGTTATTACTCACAATAAAA+AGG + chr1_4:69424082-69424101 Msa0181230:intron 20.0%
!!! TTGATTTTTGTAACATGAAA+AGG + chr1_4:69424456-69424475 Msa0181230:intron 20.0%
!!! TGATTTTTGTAACATGAAAA+GGG + chr1_4:69424457-69424476 Msa0181230:intron 20.0%
!! CAAAAAAAATTAGTATACAG+AGG - chr1_4:69425328-69425347 None:intergenic 20.0%
!!! CTCTGTATACTAATTTTTTT+TGG + chr1_4:69425326-69425345 Msa0181230:three_prime_UTR 20.0%
!!! TTATGTTTTATGTTGTACAT+AGG + chr1_4:69425378-69425397 Msa0181230:three_prime_UTR 20.0%
!!! TATGTTTTATGTTGTACATA+GGG + chr1_4:69425379-69425398 Msa0181230:three_prime_UTR 20.0%
! TACTTTCAAATCTGAAAATG+GGG + chr1_4:69420641-69420660 Msa0181230:intron 25.0%
! ATGAAAAAAACATGTTTCCT+AGG + chr1_4:69420684-69420703 Msa0181230:intron 25.0%
! GTTTAAATTTCAAACATCCT+AGG - chr1_4:69420704-69420723 None:intergenic 25.0%
!!! AATGCATTCTTTTTCATCTT+TGG - chr1_4:69420839-69420858 None:intergenic 25.0%
!! TTGAATCTGTTAAACTTGTT+AGG + chr1_4:69420957-69420976 Msa0181230:CDS 25.0%
!!! TGAATCTGTTAAACTTGTTA+GGG + chr1_4:69420958-69420977 Msa0181230:CDS 25.0%
! ATTGTTACGTACTTAAAAGA+AGG + chr1_4:69421060-69421079 Msa0181230:intron 25.0%
!!! TTTTTGAGAGGATTTAATGT+TGG + chr1_4:69421096-69421115 Msa0181230:intron 25.0%
!!! TGATTTTTTAACAGAAACTG+AGG + chr1_4:69421202-69421221 Msa0181230:CDS 25.0%
! AATGTAAAGTGATTCATGTT+TGG + chr1_4:69421450-69421469 Msa0181230:intron 25.0%
!! AATTTTATCTCCTTCAAAAG+TGG + chr1_4:69421558-69421577 Msa0181230:intron 25.0%
! GTTAAATTAACTGTAGGTTA+TGG - chr1_4:69421781-69421800 None:intergenic 25.0%
! CAAAGGAAAAATTATTGCAA+TGG - chr1_4:69421803-69421822 None:intergenic 25.0%
! TCAAATGAATAAATCCAAAC+AGG - chr1_4:69422017-69422036 None:intergenic 25.0%
! TATCTTATAGAATAGCAACT+TGG + chr1_4:69422160-69422179 Msa0181230:intron 25.0%
!!! AATCTCACTTTTGAGATTTT+CGG - chr1_4:69422447-69422466 None:intergenic 25.0%
!! AGTCTGATATTGATAATACT+AGG + chr1_4:69422684-69422703 Msa0181230:CDS 25.0%
! GTTTATGAAAAAGAAATGAG+TGG + chr1_4:69422737-69422756 Msa0181230:CDS 25.0%
! AATGCTAGAACAAAAGAATA+AGG + chr1_4:69422835-69422854 Msa0181230:CDS 25.0%
!! ACACAGAATTAAATGTTTTG+CGG + chr1_4:69422918-69422937 Msa0181230:CDS 25.0%
! AATTCTCTATTTCACTATTC+TGG - chr1_4:69422958-69422977 None:intergenic 25.0%
! TCTTCTTAAGAATGAAAATG+TGG + chr1_4:69423036-69423055 Msa0181230:CDS 25.0%
! TGAAAATCAAGTTAAGTCTT+TGG + chr1_4:69423231-69423250 Msa0181230:CDS 25.0%
! ATCAAAATCAGAAATGCATA+AGG + chr1_4:69423942-69423961 Msa0181230:CDS 25.0%
! AGTAATAACCTTAGAATCTA+AGG + chr1_4:69424116-69424135 Msa0181230:intron 25.0%
!!! GAAAAGTGTACATATCATTT+TGG - chr1_4:69424152-69424171 None:intergenic 25.0%
!!! CAAATGTTTTGTTATATGGA+TGG - chr1_4:69424593-69424612 None:intergenic 25.0%
! CATCCATATAACAAAACATT+TGG + chr1_4:69424591-69424610 Msa0181230:intron 25.0%
! CATTCAATAATTCCTTTGTA+AGG - chr1_4:69424712-69424731 None:intergenic 25.0%
! AAAGGAATTATTGAATGAAG+TGG + chr1_4:69424715-69424734 Msa0181230:CDS 25.0%
! TTTCATACCAAACATATACA+GGG + chr1_4:69424913-69424932 Msa0181230:three_prime_UTR 25.0%
!!! CAAAAAGTACTGGTTAAATT+TGG - chr1_4:69424985-69425004 None:intergenic 25.0%
!! AAAAATGTTAGTTGATGTAC+AGG - chr1_4:69425031-69425050 None:intergenic 25.0%
!! TATCATCTGTTTGACATTTT+TGG + chr1_4:69425179-69425198 Msa0181230:three_prime_UTR 25.0%
TCTCAATCAACCAAGAAATA+AGG + chr1_4:69420289-69420308 Msa0181230:five_prime_UTR 30.0%
GATCAAAGCTGTATTCAAAT+TGG + chr1_4:69420565-69420584 Msa0181230:CDS 30.0%
!! GTATGAATCTGCTTTTGATT+AGG + chr1_4:69420811-69420830 Msa0181230:intron 30.0%
GATGAAAAAGAATGCATTGA+TGG + chr1_4:69420841-69420860 Msa0181230:CDS 30.0%
TTACAGTTGCAACAATGAAA+TGG - chr1_4:69421018-69421037 None:intergenic 30.0%
!!! TCTTTTTTATGGATGCTTGT+AGG + chr1_4:69421133-69421152 Msa0181230:intron 30.0%
!!! CTTTTTTATGGATGCTTGTA+GGG + chr1_4:69421134-69421153 Msa0181230:intron 30.0%
AAGAAAGTAAGAGAGATAGA+GGG - chr1_4:69421288-69421307 None:intergenic 30.0%
GATTAAGAGACGAATAATGT+GGG - chr1_4:69421346-69421365 None:intergenic 30.0%
AGATTAAGAGACGAATAATG+TGG - chr1_4:69421347-69421366 None:intergenic 30.0%
! GGAGATAAAATTGATTCTAG+AGG - chr1_4:69421550-69421569 None:intergenic 30.0%
ATACACTAAGAATCAGTGTT+TGG + chr1_4:69421589-69421608 Msa0181230:intron 30.0%
GCAATGGTTAAATTAACTGT+AGG - chr1_4:69421787-69421806 None:intergenic 30.0%
!! GTAGACTTTTTAGTGCATTT+AGG - chr1_4:69421835-69421854 None:intergenic 30.0%
! TCTACCTTATTTGCAGAAAT+GGG + chr1_4:69421850-69421869 Msa0181230:intron 30.0%
GCTGTGGAAATTTATAATGA+TGG + chr1_4:69421885-69421904 Msa0181230:CDS 30.0%
GTTACAATCTTGATGAAGTA+AGG + chr1_4:69421949-69421968 Msa0181230:intron 30.0%
CTAAACAGAAACTTCTAACA+AGG + chr1_4:69422079-69422098 Msa0181230:intron 30.0%
! CTCAAATTCTGAACTTCTTT+TGG + chr1_4:69422793-69422812 Msa0181230:CDS 30.0%
TATTGGATCTATCTTCCAAT+AGG + chr1_4:69422861-69422880 Msa0181230:CDS 30.0%
!! AATCTTCTGAGATTTCCTAT+TGG - chr1_4:69422879-69422898 None:intergenic 30.0%
CATGTTACAAAATGAACACT+CGG + chr1_4:69423099-69423118 Msa0181230:CDS 30.0%
! AGATGAATTTTCATCGTCAT+TGG + chr1_4:69423192-69423211 Msa0181230:CDS 30.0%
!!! TTGATTTTCAAGTTCCTTGA+TGG - chr1_4:69423221-69423240 None:intergenic 30.0%
TAAATTTGAAGATGAACTCC+AGG + chr1_4:69423279-69423298 Msa0181230:CDS 30.0%
AGATCAACATGAATTGAAAG+TGG + chr1_4:69423564-69423583 Msa0181230:CDS 30.0%
TATATCTCAATTAGAAGGAG+AGG + chr1_4:69423804-69423823 Msa0181230:CDS 30.0%
AGAAGCAGAATTAAATGCTA+TGG + chr1_4:69423837-69423856 Msa0181230:CDS 30.0%
AAATTCAACTGTAATGAGTG+AGG + chr1_4:69424280-69424299 Msa0181230:intron 30.0%
AATTCAACTGTAATGAGTGA+GGG + chr1_4:69424281-69424300 Msa0181230:intron 30.0%
TTTGTAACATGAAAAGGGAA+TGG + chr1_4:69424462-69424481 Msa0181230:intron 30.0%
TTGTTATATGGATGGTAAGA+GGG - chr1_4:69424585-69424604 None:intergenic 30.0%
! TTTGTTATATGGATGGTAAG+AGG - chr1_4:69424586-69424605 None:intergenic 30.0%
!! GCACCAAATGTTTTGTTATA+TGG - chr1_4:69424597-69424616 None:intergenic 30.0%
GTTTCATACCAAACATATAC+AGG + chr1_4:69424912-69424931 Msa0181230:three_prime_UTR 30.0%
TTCATACCAAACATATACAG+GGG + chr1_4:69424914-69424933 Msa0181230:three_prime_UTR 30.0%
AAGATATCATGATTACTACC+AGG + chr1_4:69424950-69424969 Msa0181230:three_prime_UTR 30.0%
! AGTTGATGTACAGGATAAAT+AGG - chr1_4:69425022-69425041 None:intergenic 30.0%
GATAAACATTTGACTACATG+TGG - chr1_4:69425163-69425182 None:intergenic 30.0%
!!! TGTTTGACATTTTTGGTTTG+CGG + chr1_4:69425186-69425205 Msa0181230:three_prime_UTR 30.0%
! ATTCTCAATCAAAGCATCAT+AGG - chr1_4:69425230-69425249 None:intergenic 30.0%
TGATGCTTTGATTGAGAATT+TGG + chr1_4:69425231-69425250 Msa0181230:three_prime_UTR 30.0%
ATAAAACAGACTATGTAGTC+TGG + chr1_4:69425269-69425288 Msa0181230:three_prime_UTR 30.0%
!! TGTTACTTTCAAAAGCAGTT+TGG + chr1_4:69425427-69425446 Msa0181230:three_prime_UTR 30.0%
! AAGTCACACTCCTTATTTCT+TGG - chr1_4:69420302-69420321 None:intergenic 35.0%
! GGTTAATGAGTTGAAGAAAG+CGG - chr1_4:69420353-69420372 None:intergenic 35.0%
! TAATTTGTGACAAAGTCGGT+TGG - chr1_4:69420374-69420393 None:intergenic 35.0%
ATTGGAATTTCAAGCAACTC+AGG + chr1_4:69420583-69420602 Msa0181230:CDS 35.0%
TCAAATCTGAAAATGGGGTT+TGG + chr1_4:69420646-69420665 Msa0181230:intron 35.0%
! GAATGCATTGATGGTATCTT+TGG + chr1_4:69420850-69420869 Msa0181230:CDS 35.0%
!! GTTTTCTCTAGTTTCACTGT+TGG - chr1_4:69420896-69420915 None:intergenic 35.0%
! TTCAAGATGGGACTTGTTTA+TGG + chr1_4:69420921-69420940 Msa0181230:CDS 35.0%
! TCAAGATGGGACTTGTTTAT+GGG + chr1_4:69420922-69420941 Msa0181230:CDS 35.0%
CTTGTTAGGGATTCAAAATC+AGG + chr1_4:69420971-69420990 Msa0181230:CDS 35.0%
TGAGAGGATTTAATGTTGGT+TGG + chr1_4:69421100-69421119 Msa0181230:intron 35.0%
TTGTAGGGTTCTTCAAAATC+TGG + chr1_4:69421149-69421168 Msa0181230:intron 35.0%
TTCTTCAAAATCTGGCTACT+TGG + chr1_4:69421157-69421176 Msa0181230:CDS 35.0%
TCTTCAAAATCTGGCTACTT+GGG + chr1_4:69421158-69421177 Msa0181230:CDS 35.0%
GCCCTTGAAATTTGCAAATT+CGG + chr1_4:69421241-69421260 Msa0181230:CDS 35.0%
CCCGAATTTGCAAATTTCAA+GGG - chr1_4:69421245-69421264 None:intergenic 35.0%
CCCTTGAAATTTGCAAATTC+GGG + chr1_4:69421242-69421261 Msa0181230:CDS 35.0%
CAAGAAAGTAAGAGAGATAG+AGG - chr1_4:69421289-69421308 None:intergenic 35.0%
!! ATGTGAAGTTCCACTTTTGA+AGG - chr1_4:69421571-69421590 None:intergenic 35.0%
AAGAATCAGTGTTTGGACAT+TGG + chr1_4:69421596-69421615 Msa0181230:intron 35.0%
CACATAAGAATTGTCGAAAC+AGG + chr1_4:69421707-69421726 Msa0181230:intron 35.0%
ACAGGTAACTATTCAGAATG+TGG + chr1_4:69421725-69421744 Msa0181230:intron 35.0%
GTAACTATTCAGAATGTGGA+AGG + chr1_4:69421729-69421748 Msa0181230:CDS 35.0%
TATGGTTCATCTTCACCTTT+CGG - chr1_4:69421763-69421782 None:intergenic 35.0%
CATTTAGGAGAGAAAGTCAA+AGG - chr1_4:69421820-69421839 None:intergenic 35.0%
! GTCTACCTTATTTGCAGAAA+TGG + chr1_4:69421849-69421868 Msa0181230:intron 35.0%
! CTACCTTATTTGCAGAAATG+GGG + chr1_4:69421851-69421870 Msa0181230:intron 35.0%
TTGAAACACCAATTGAGCTA+TGG + chr1_4:69421912-69421931 Msa0181230:CDS 35.0%
AATTCTATTAAGCGCCTGTT+TGG + chr1_4:69422000-69422019 Msa0181230:intron 35.0%
AGTAGATCTGATGCATCAAA+TGG + chr1_4:69422188-69422207 Msa0181230:CDS 35.0%
! CACTTGATTTTGTGTTGCAT+TGG - chr1_4:69422294-69422313 None:intergenic 35.0%
CACAAAATCAAGTGCATAAG+AGG + chr1_4:69422300-69422319 Msa0181230:CDS 35.0%
AGTTTAGGTGATTGGACAAA+CGG + chr1_4:69422362-69422381 Msa0181230:CDS 35.0%
! TTTTCCGAGAGAAAGATTAC+AGG + chr1_4:69422397-69422416 Msa0181230:CDS 35.0%
AACTAGAGTTACAAGCACTT+CGG + chr1_4:69422498-69422517 Msa0181230:CDS 35.0%
AGGTAGAAAAAGAAAGCAGT+CGG + chr1_4:69422525-69422544 Msa0181230:CDS 35.0%
AAGACAAATCAATGGTCTCA+GGG + chr1_4:69422562-69422581 Msa0181230:CDS 35.0%
! ATCAGACTTCAAGCTTTTAG+AGG - chr1_4:69422672-69422691 None:intergenic 35.0%
GCTTCAGTTAGATGCAATAA+AGG + chr1_4:69422706-69422725 Msa0181230:CDS 35.0%
TTTGTTCTAGCATTGCTTCA+AGG - chr1_4:69422829-69422848 None:intergenic 35.0%
TTCTTCTAGTCTCTTCACTT+GGG - chr1_4:69423155-69423174 None:intergenic 35.0%
TTTCTTCTAGTCTCTTCACT+TGG - chr1_4:69423156-69423175 None:intergenic 35.0%
AGAAGAAAAGATAGTGATGC+AGG + chr1_4:69423168-69423187 Msa0181230:CDS 35.0%
!!! TTTTTTCACTTTGCATAGCC+TGG - chr1_4:69423300-69423319 None:intergenic 35.0%
AAAAAACTGAGCAGGAAGAA+CGG + chr1_4:69423314-69423333 Msa0181230:CDS 35.0%
AAGAACTTGAAGATGCACAA+AGG + chr1_4:69423662-69423681 Msa0181230:CDS 35.0%
TGTGTTTCATTTCATTGTGC+TGG - chr1_4:69423741-69423760 None:intergenic 35.0%
AAGAAGCTCAAGAATAACAG+AGG + chr1_4:69423862-69423881 Msa0181230:CDS 35.0%
AATGCATAAGGTAATTGCTC+AGG + chr1_4:69423954-69423973 Msa0181230:intron 35.0%
ACTTATTGACGTCGCATATT+AGG + chr1_4:69424008-69424027 Msa0181230:intron 35.0%
GCATATTAGGACAGGTTAAA+TGG + chr1_4:69424021-69424040 Msa0181230:intron 35.0%
ACTGAACTCCTTAGATTCTA+AGG - chr1_4:69424127-69424146 None:intergenic 35.0%
!! AACAGTTTTGTAGTGAGTGA+GGG + chr1_4:69424221-69424240 Msa0181230:intron 35.0%
GATTGTGTTAAAGGGAACAA+GGG - chr1_4:69424557-69424576 None:intergenic 35.0%
TGATTGTGTTAAAGGGAACA+AGG - chr1_4:69424558-69424577 None:intergenic 35.0%
GGGTTCATGATTGTGTTAAA+GGG - chr1_4:69424565-69424584 None:intergenic 35.0%
AGGGTTCATGATTGTGTTAA+AGG - chr1_4:69424566-69424585 None:intergenic 35.0%
ATAACTCAAATACGACGTTG+TGG - chr1_4:69424619-69424638 None:intergenic 35.0%
TATTCGTGTTCCTTTCCTTT+AGG - chr1_4:69424745-69424764 None:intergenic 35.0%
AAAGGAAAGGAACACGAATA+TGG + chr1_4:69424745-69424764 Msa0181230:CDS 35.0%
GGAAACTGAACTGAAAGAAA+TGG + chr1_4:69424766-69424785 Msa0181230:CDS 35.0%
!! GATTAGTCTGAAATTTGCAG+AGG + chr1_4:69424805-69424824 Msa0181230:CDS 35.0%
!! AGAAAGACAACAGCTTGTTA+TGG + chr1_4:69424835-69424854 Msa0181230:CDS 35.0%
TTGTAACCCCTGTATATGTT+TGG - chr1_4:69424923-69424942 None:intergenic 35.0%
AACATATACAGGGGTTACAA+AGG + chr1_4:69424923-69424942 Msa0181230:three_prime_UTR 35.0%
TATCATGATTACTACCAGGA+TGG + chr1_4:69424954-69424973 Msa0181230:three_prime_UTR 35.0%
TAAATTTGGTTACACCATCC+TGG - chr1_4:69424971-69424990 None:intergenic 35.0%
TACCTTGACAATGTACCATA+CGG - chr1_4:69425108-69425127 None:intergenic 35.0%
TATGATGTTGTAGCCTCATA+TGG + chr1_4:69425136-69425155 Msa0181230:three_prime_UTR 35.0%
ATGATGTTGTAGCCTCATAT+GGG + chr1_4:69425137-69425156 Msa0181230:three_prime_UTR 35.0%
!!! TTGTACATAGGGCTAGTTTT+TGG + chr1_4:69425390-69425409 Msa0181230:three_prime_UTR 35.0%
!! TTCAAAAGCAGTTTGGTTCT+TGG + chr1_4:69425434-69425453 Msa0181230:three_prime_UTR 35.0%
CATGACTTGAACATGCTTTC+AGG - chr1_4:69420530-69420549 None:intergenic 40.0%
! CTGAAAGCATGTTCAAGTCA+TGG + chr1_4:69420528-69420547 Msa0181230:exon 40.0%
AGAAAACCGCTGTTCAAGAT+GGG + chr1_4:69420909-69420928 Msa0181230:CDS 40.0%
GCCCGAATTTGCAAATTTCA+AGG - chr1_4:69421246-69421265 None:intergenic 40.0%
AATCAGTGTTTGGACATTGG+TGG + chr1_4:69421599-69421618 Msa0181230:intron 40.0%
ATCAGTGTTTGGACATTGGT+GGG + chr1_4:69421600-69421619 Msa0181230:intron 40.0%
CTTCCCCATTTCTGCAAATA+AGG - chr1_4:69421857-69421876 None:intergenic 40.0%
TGCAGAAATGGGGAAGATAA+TGG + chr1_4:69421861-69421880 Msa0181230:intron 40.0%
TGATGCATCAGATCTACTCT+TGG - chr1_4:69422186-69422205 None:intergenic 40.0%
! AGTTCTGTCTGAAGCTATAG+GGG - chr1_4:69422244-69422263 None:intergenic 40.0%
! GAGTTCTGTCTGAAGCTATA+GGG - chr1_4:69422245-69422264 None:intergenic 40.0%
! TGAGTTCTGTCTGAAGCTAT+AGG - chr1_4:69422246-69422265 None:intergenic 40.0%
GTGCATAAGAGGTCAAATAC+AGG + chr1_4:69422311-69422330 Msa0181230:CDS 40.0%
ATAAGAGGTCAAATACAGGC+TGG + chr1_4:69422315-69422334 Msa0181230:CDS 40.0%
! TCAAATACAGGCTGGTCAAT+GGG + chr1_4:69422323-69422342 Msa0181230:CDS 40.0%
TCAGCATCAGATGGAAGTTT+AGG + chr1_4:69422347-69422366 Msa0181230:CDS 40.0%
CAGATGGAAGTTTAGGTGAT+TGG + chr1_4:69422354-69422373 Msa0181230:CDS 40.0%
!!! CTCACTTTTGAGATTTTCGG+TGG - chr1_4:69422444-69422463 None:intergenic 40.0%
! GTGAGATTGTTTCTCTGAAG+AGG + chr1_4:69422459-69422478 Msa0181230:CDS 40.0%
GGTAGAAAAAGAAAGCAGTC+GGG + chr1_4:69422526-69422545 Msa0181230:CDS 40.0%
GTAGAAAAAGAAAGCAGTCG+GGG + chr1_4:69422527-69422546 Msa0181230:CDS 40.0%
CAAGACAAATCAATGGTCTC+AGG + chr1_4:69422561-69422580 Msa0181230:CDS 40.0%
!! CTTCAAGCTTTTAGAGGTCT+TGG - chr1_4:69422666-69422685 None:intergenic 40.0%
GAATTGTTATAAGCAACGCG+AGG + chr1_4:69422973-69422992 Msa0181230:CDS 40.0%
GCTTATAAAAGAGCTCACAG+TGG + chr1_4:69423006-69423025 Msa0181230:CDS 40.0%
GGAGAAAGAACTGAGAATAC+AGG + chr1_4:69423252-69423271 Msa0181230:CDS 40.0%
GCAAAGTGAAAAAACTGAGC+AGG + chr1_4:69423306-69423325 Msa0181230:CDS 40.0%
AAAAACTGAGCAGGAAGAAC+GGG + chr1_4:69423315-69423334 Msa0181230:CDS 40.0%
ATTGTGTCTCGTCTTTCTCA+GGG - chr1_4:69423359-69423378 None:intergenic 40.0%
TATTGTGTCTCGTCTTTCTC+AGG - chr1_4:69423360-69423379 None:intergenic 40.0%
TCGAAGAAGCTGATGAATTG+CGG + chr1_4:69423479-69423498 Msa0181230:CDS 40.0%
TTTCTTCCATAAGCCTGTTG+TGG - chr1_4:69423507-69423526 None:intergenic 40.0%
TGAGCTCTTGATTGCATTTC+TGG - chr1_4:69423534-69423553 None:intergenic 40.0%
AGAAATGCAATCAAGAGCTC+AGG + chr1_4:69423533-69423552 Msa0181230:CDS 40.0%
ACACAGTTTGCAGAAAGAAC+AGG + chr1_4:69423756-69423775 Msa0181230:CDS 40.0%
!! GAACAGTTTTGTAGTGAGTG+AGG + chr1_4:69424220-69424239 Msa0181230:intron 40.0%
GGGTTAACGTTAGAATCTCA+TGG + chr1_4:69424241-69424260 Msa0181230:intron 40.0%
GTAATGAGTGAGGGTTAATG+TGG + chr1_4:69424290-69424309 Msa0181230:intron 40.0%
ACTGGTATTAGCAAGTCTGA+AGG + chr1_4:69424496-69424515 Msa0181230:CDS 40.0%
GTATTAGCAAGTCTGAAGGA+AGG + chr1_4:69424500-69424519 Msa0181230:CDS 40.0%
TCAGCATCACTGTCAGAATT+AGG - chr1_4:69424686-69424705 None:intergenic 40.0%
! TCTGAAATTTGCAGAGGTAG+AGG + chr1_4:69424811-69424830 Msa0181230:CDS 40.0%
CTGAAATTTGCAGAGGTAGA+GGG + chr1_4:69424812-69424831 Msa0181230:CDS 40.0%
GCTGTACGTAATCTCAAGAA+TGG + chr1_4:69424857-69424876 Msa0181230:CDS 40.0%
GAAGAACTAGAACTCTTTGC+AGG + chr1_4:69424883-69424902 Msa0181230:exon 40.0%
! AGCAGAAGTGCAAAAAGTAC+TGG - chr1_4:69424995-69425014 None:intergenic 40.0%
TACCATACGGACCGAAAAAT+TGG - chr1_4:69425095-69425114 None:intergenic 40.0%
GTACATTGTCAAGGTAACCA+GGG + chr1_4:69425112-69425131 Msa0181230:three_prime_UTR 40.0%
TACATTGTCAAGGTAACCAG+GGG + chr1_4:69425113-69425132 Msa0181230:three_prime_UTR 40.0%
TGCAGTGTTGTGTTGTGTTG+TGG - chr1_4:69420486-69420505 None:intergenic 45.0%
!! TCTTTGGTGCCAGATGATGT+TGG + chr1_4:69420866-69420885 Msa0181230:CDS 45.0%
!! CTTTGGTGCCAGATGATGTT+GGG + chr1_4:69420867-69420886 Msa0181230:CDS 45.0%
! GTTGGTTTCCCAACATCATC+TGG - chr1_4:69420878-69420897 None:intergenic 45.0%
GAGAAAACCGCTGTTCAAGA+TGG + chr1_4:69420908-69420927 Msa0181230:CDS 45.0%
ACAAGTCCCATCTTGAACAG+CGG - chr1_4:69420918-69420937 None:intergenic 45.0%
TGGGTGTGGTTGTTGAGAAT+TGG - chr1_4:69421327-69421346 None:intergenic 45.0%
AGAGACGAATAATGTGGGTG+TGG - chr1_4:69421341-69421360 None:intergenic 45.0%
TGGAAGGATATACTGCCGAA+AGG + chr1_4:69421745-69421764 Msa0181230:CDS 45.0%
CTGTACTGCCATAGCTCAAT+TGG - chr1_4:69421923-69421942 None:intergenic 45.0%
CATCAAATGGCATCAGTCCT+GGG + chr1_4:69422201-69422220 Msa0181230:CDS 45.0%
ATCAAATGGCATCAGTCCTG+GGG + chr1_4:69422202-69422221 Msa0181230:CDS 45.0%
! GTCAAATACAGGCTGGTCAA+TGG + chr1_4:69422322-69422341 Msa0181230:CDS 45.0%
! TCAATGGGTTCAGCATCAGA+TGG + chr1_4:69422338-69422357 Msa0181230:CDS 45.0%
GGCTCCTGTAATCTTTCTCT+CGG - chr1_4:69422404-69422423 None:intergenic 45.0%
GAAAGATTACAGGAGCCTAC+AGG + chr1_4:69422407-69422426 Msa0181230:CDS 45.0%
! GATTGTTTCTCTGAAGAGGC+AGG + chr1_4:69422463-69422482 Msa0181230:CDS 45.0%
GAAGAGGCAGGCAGAATTAT+CGG + chr1_4:69422475-69422494 Msa0181230:CDS 45.0%
! ATCGTCATTGGTCTCCATCA+AGG + chr1_4:69423204-69423223 Msa0181230:CDS 45.0%
ATGAATTGCGGAACCACAAC+AGG + chr1_4:69423491-69423510 Msa0181230:CDS 45.0%
! TTGAAGATGCACAAAGGCAC+AGG + chr1_4:69423668-69423687 Msa0181230:CDS 45.0%
! TGAAGATGCACAAAGGCACA+GGG + chr1_4:69423669-69423688 Msa0181230:CDS 45.0%
! ACAAAGGCACAGGGATGAAA+AGG + chr1_4:69423678-69423697 Msa0181230:CDS 45.0%
CAGTTTGCAGAAAGAACAGG+TGG + chr1_4:69423759-69423778 Msa0181230:CDS 45.0%
CTCAAGAATAACAGAGGACG+AGG + chr1_4:69423868-69423887 Msa0181230:CDS 45.0%
CTCATTGTCTCTTGAGGTCA+TGG - chr1_4:69423899-69423918 None:intergenic 45.0%
CATGACCTCAAGAGACAATG+AGG + chr1_4:69423897-69423916 Msa0181230:CDS 45.0%
AAGAGACAATGAGGCTGCTA+AGG + chr1_4:69423906-69423925 Msa0181230:CDS 45.0%
TTGACGTCGCATATTAGGAC+AGG + chr1_4:69424013-69424032 Msa0181230:intron 45.0%
AAGGGAACAAGGGATTCAGA+TGG - chr1_4:69424547-69424566 None:intergenic 45.0%
TGATGCTGAACGCCTTACAA+AGG + chr1_4:69424697-69424716 Msa0181230:CDS 45.0%
GAATGAAGTGGCAGTCCTAA+AGG + chr1_4:69424727-69424746 Msa0181230:CDS 45.0%
AAGTGGCAGTCCTAAAGGAA+AGG + chr1_4:69424732-69424751 Msa0181230:CDS 45.0%
! GACTGCACGGTCCAATTTTT+CGG + chr1_4:69425081-69425100 Msa0181230:three_prime_UTR 45.0%
!! GTCCAATTTTTCGGTCCGTA+TGG + chr1_4:69425090-69425109 Msa0181230:three_prime_UTR 45.0%
GTCCGTATGGTACATTGTCA+AGG + chr1_4:69425103-69425122 Msa0181230:three_prime_UTR 45.0%
GGTACATTGTCAAGGTAACC+AGG + chr1_4:69425111-69425130 Msa0181230:three_prime_UTR 45.0%
! TGGGGAAGATAATGGTGCTG+TGG + chr1_4:69421869-69421888 Msa0181230:CDS 50.0%
GCATCAAATGGCATCAGTCC+TGG + chr1_4:69422200-69422219 Msa0181230:CDS 50.0%
CAGAACTCAATGCCACCAAG+AGG + chr1_4:69422257-69422276 Msa0181230:CDS 50.0%
TTGGCCTCAACTGTTCCTCT+TGG - chr1_4:69422275-69422294 None:intergenic 50.0%
TTACAGGAGCCTACAGGCAA+TGG + chr1_4:69422413-69422432 Msa0181230:CDS 50.0%
GTTACAAGCACTTCGGAAGC+AGG + chr1_4:69422505-69422524 Msa0181230:CDS 50.0%
CAGGGACTCTTCTGCTTGAA+TGG - chr1_4:69423341-69423360 None:intergenic 50.0%
TATCGCATCTGAGCAGCTTC+AGG + chr1_4:69423384-69423403 Msa0181230:CDS 50.0%
AGCAGCCTCATTGTCTCTTG+AGG - chr1_4:69423905-69423924 None:intergenic 50.0%
! GCAGTCAGCGCAGCAAATTT+TGG - chr1_4:69425067-69425086 None:intergenic 50.0%
!! AATTTGCTGCGCTGACTGCA+CGG + chr1_4:69425068-69425087 Msa0181230:three_prime_UTR 50.0%
AGGCTACAACATCATACCCC+TGG - chr1_4:69425132-69425151 None:intergenic 50.0%
GACTACATGTGGCCCATATG+AGG - chr1_4:69425152-69425171 None:intergenic 50.0%
TCAGTCCTGGGGTAGCTTCA+TGG + chr1_4:69422213-69422232 Msa0181230:CDS 55.0%
CAGTCCTGGGGTAGCTTCAT+GGG + chr1_4:69422214-69422233 Msa0181230:CDS 55.0%
TCATCCCATGAAGCTACCCC+AGG - chr1_4:69422221-69422240 None:intergenic 55.0%
GCCACCAAGAGGAACAGTTG+AGG + chr1_4:69422268-69422287 Msa0181230:CDS 55.0%
GCCTCAACTGTTCCTCTTGG+TGG - chr1_4:69422272-69422291 None:intergenic 55.0%
GTGGCATTGCCATTGCCTGT+AGG - chr1_4:69422425-69422444 None:intergenic 55.0%
GCGGAACCACAACAGGCTTA+TGG + chr1_4:69423498-69423517 Msa0181230:CDS 55.0%
GGAATGGATGCTGCAAGCAC+TGG + chr1_4:69424478-69424497 Msa0181230:CDS 55.0%
CGCATCTGAGCAGCTTCAGG+AGG + chr1_4:69423387-69423406 Msa0181230:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 69420278 69425464 69420278 ID=Msa0181230;Name=Msa0181230
chr1_4 mRNA 69420278 69425464 69420278 ID=Msa0181230-mRNA-1;Parent=Msa0181230;Name=Msa0181230-mRNA-1;_AED=0.05;_eAED=0.05;_QI=258|1|1|1|1|1|8|572|854
chr1_4 exon 69420278 69420604 69420278 ID=Msa0181230-mRNA-1:exon:23028;Parent=Msa0181230-mRNA-1
chr1_4 exon 69420833 69421033 69420833 ID=Msa0181230-mRNA-1:exon:23029;Parent=Msa0181230-mRNA-1
chr1_4 exon 69421155 69421277 69421155 ID=Msa0181230-mRNA-1:exon:23030;Parent=Msa0181230-mRNA-1
chr1_4 exon 69421729 69421766 69421729 ID=Msa0181230-mRNA-1:exon:23031;Parent=Msa0181230-mRNA-1
chr1_4 exon 69421866 69421965 69421866 ID=Msa0181230-mRNA-1:exon:23032;Parent=Msa0181230-mRNA-1
chr1_4 exon 69422170 69423963 69422170 ID=Msa0181230-mRNA-1:exon:23033;Parent=Msa0181230-mRNA-1
chr1_4 exon 69424478 69424521 69424478 ID=Msa0181230-mRNA-1:exon:23034;Parent=Msa0181230-mRNA-1
chr1_4 exon 69424697 69425464 69424697 ID=Msa0181230-mRNA-1:exon:23035;Parent=Msa0181230-mRNA-1
chr1_4 five_prime_UTR 69420278 69420535 69420278 ID=Msa0181230-mRNA-1:five_prime_utr;Parent=Msa0181230-mRNA-1
chr1_4 CDS 69420536 69420604 69420536 ID=Msa0181230-mRNA-1:cds;Parent=Msa0181230-mRNA-1
chr1_4 CDS 69420833 69421033 69420833 ID=Msa0181230-mRNA-1:cds;Parent=Msa0181230-mRNA-1
chr1_4 CDS 69421155 69421277 69421155 ID=Msa0181230-mRNA-1:cds;Parent=Msa0181230-mRNA-1
chr1_4 CDS 69421729 69421766 69421729 ID=Msa0181230-mRNA-1:cds;Parent=Msa0181230-mRNA-1
chr1_4 CDS 69421866 69421965 69421866 ID=Msa0181230-mRNA-1:cds;Parent=Msa0181230-mRNA-1
chr1_4 CDS 69422170 69423963 69422170 ID=Msa0181230-mRNA-1:cds;Parent=Msa0181230-mRNA-1
chr1_4 CDS 69424478 69424521 69424478 ID=Msa0181230-mRNA-1:cds;Parent=Msa0181230-mRNA-1
chr1_4 CDS 69424697 69424892 69424697 ID=Msa0181230-mRNA-1:cds;Parent=Msa0181230-mRNA-1
chr1_4 three_prime_UTR 69424893 69425464 69424893 ID=Msa0181230-mRNA-1:three_prime_utr;Parent=Msa0181230-mRNA-1
Gene Sequence

>Msa0181230

ATGTTCAAGTCATGGAGCAAGAAAAACAAGATCAAAGCTGTATTCAAATTGGAATTTCAAGCAACTCAGGTTCCAAAGATGAAAAAGAATGCATTGATGGTATCTTTGGTGCCAGATGATGTTGGGAAACCAACAGTGAAACTAGAGAAAACCGCTGTTCAAGATGGGACTTGTTTATGGGAGAATCCAATTTTTGAATCTGTTAAACTTGTTAGGGATTCAAAATCAGGAATTCTACATGAGAAAATCTACCATTTCATTGTTGCAACTGGTTCTTCAAAATCTGGCTACTTGGGAGAAGCTTCAATTGATTTTGCTGATTTTTTAACAGAAACTGAGGCAATTACTGTTTCTCTGCCCTTGAAATTTGCAAATTCGGGCGTAGTTTTACATGTAACTATTCAGAATGTGGAAGGATATACTGCCGAAAGAAATGGGGAAGATAATGGTGCTGTGGAAATTTATAATGATGGAAGCTTGAAACACCAATTGAGCTATGGCAGTACAGATGAAAGTTACAATCTTGATGAAAATAGCAACTTGGCCAAGAGTAGATCTGATGCATCAAATGGCATCAGTCCTGGGGTAGCTTCATGGGATGACCCCTATAGCTTCAGACAGAACTCAATGCCACCAAGAGGAACAGTTGAGGCCAATGCAACACAAAATCAAGTGCATAAGAGGTCAAATACAGGCTGGTCAATGGGTTCAGCATCAGATGGAAGTTTAGGTGATTGGACAAACGGAACAGAAGACAATTTTCCGAGAGAAAGATTACAGGAGCCTACAGGCAATGGCAATGCCACCGAAAATCTCAAAAGTGAGATTGTTTCTCTGAAGAGGCAGGCAGAATTATCGGAACTAGAGTTACAAGCACTTCGGAAGCAGGTAGAAAAAGAAAGCAGTCGGGGACAGAATTTATCAAGACAAATCAATGGTCTCAGGGACGAAAGAGATTCACTCAAAACTAAATACGAGCAACTCAAGTCCCAACAGAACTTCAATAATAATAGTAATAATGAGACCAAGACCTCTAAAAGCTTGAAGTCTGATATTGATAATACTAGGCTTCAGTTAGATGCAATAAAGGAAGAGCTTGTTTATGAAAAAGAAATGAGTGGAAATCTTCAATTGCAACTGCAGAAAACACAGAACTCAAATTCTGAACTTCTTTTGGCTGTGACAGACCTTGAAGCAATGCTAGAACAAAAGAATAAGGAAATATTGGATCTATCTTCCAATAGGAAATCTCAGAAGATTACTAAAGAGCGTGATAATGACACAGAATTAAATGTTTTGCGGCAGAAGATTGCAGACCAGAATAGTGAAATAGAGAATTGTTATAAGCAACGCGAGGAGCTAAGCGAGCTTATAAAAGAGCTCACAGTGGAGTATGATCTTCTTAAGAATGAAAATGTGGATATCTCTCTGAGATTAAAGCAAGATGAAGCTCAACATATCATGTTACAAAATGAACACTCGGCTTCTTTAGTTACAATACAACAACTTGAATCCCAAGTGAAGAGACTAGAAGAAAAGATAGTGATGCAGGAAGATGAATTTTCATCGTCATTGGTCTCCATCAAGGAACTTGAAAATCAAGTTAAGTCTTTGGAGAAAGAACTGAGAATACAGGCAGATAAATTTGAAGATGAACTCCAGGCTATGCAAAGTGAAAAAACTGAGCAGGAAGAACGGGCCATTCAAGCAGAAGAGTCCCTGAGAAAGACGAGACACAATAATGCTATCGCATCTGAGCAGCTTCAGGAGGAATATAAATTGCTTTCTGTTGAAATGTCATGCAAAGTTGAAGAGAATGAAAAGATGATAACGAAAGCAATCGAAGAAGCTGATGAATTGCGGAACCACAACAGGCTTATGGAAGAAATGCTCCAGAAATGCAATCAAGAGCTCAGGCAAATATCAGATCAACATGAATTGAAAGTGGAAGAGCTCTTGAAACAAATAAGTACAAAAGAAAAAACAATGGAACAGATGTCGCAAGAGCTAGATGTGAAAACTAAAGAACTTGAAGATGCACAAAGGCACAGGGATGAAAAGGATGCTGCATTATCAAAGCAAATTCAAATGCTTGAGATCCAGCACAATGAAATGAAACACAGTTTGCAGAAAGAACAGGTGGATAAAGAAAATATGAAGAAACATATATCTCAATTAGAAGGAGAGGTTAAGAAGAAAGAAGCAGAATTAAATGCTATGGAAAAGAAGCTCAAGAATAACAGAGGACGAGGTGCAGCCATGACCTCAAGAGACAATGAGGCTGCTAAGGCAAATGCAAAGAAATCAAAATCAGAAATGCATAAGGGAATGGATGCTGCAAGCACTGGTATTAGCAAGTCTGAAGGAAGTGATGCTGAACGCCTTACAAAGGAATTATTGAATGAAGTGGCAGTCCTAAAGGAAAGGAACACGAATATGGAAACTGAACTGAAAGAAATGGAAGAAAGATATTCAGAGATTAGTCTGAAATTTGCAGAGGTAGAGGGAGAAAGACAACAGCTTGTTATGGCTGTACGTAATCTCAAGAATGGAAAGAAGAACTAG
Protein sequence

>Msa0181230

MFKSWSKKNKIKAVFKLEFQATQVPKMKKNALMVSLVPDDVGKPTVKLEKTAVQDGTCLWENPIFESVKLVRDSKSGILHEKIYHFIVATGSSKSGYLGEASIDFADFLTETEAITVSLPLKFANSGVVLHVTIQNVEGYTAERNGEDNGAVEIYNDGSLKHQLSYGSTDESYNLDENSNLAKSRSDASNGISPGVASWDDPYSFRQNSMPPRGTVEANATQNQVHKRSNTGWSMGSASDGSLGDWTNGTEDNFPRERLQEPTGNGNATENLKSEIVSLKRQAELSELELQALRKQVEKESSRGQNLSRQINGLRDERDSLKTKYEQLKSQQNFNNNSNNETKTSKSLKSDIDNTRLQLDAIKEELVYEKEMSGNLQLQLQKTQNSNSELLLAVTDLEAMLEQKNKEILDLSSNRKSQKITKERDNDTELNVLRQKIADQNSEIENCYKQREELSELIKELTVEYDLLKNENVDISLRLKQDEAQHIMLQNEHSASLVTIQQLESQVKRLEEKIVMQEDEFSSSLVSIKELENQVKSLEKELRIQADKFEDELQAMQSEKTEQEERAIQAEESLRKTRHNNAIASEQLQEEYKLLSVEMSCKVEENEKMITKAIEEADELRNHNRLMEEMLQKCNQELRQISDQHELKVEELLKQISTKEKTMEQMSQELDVKTKELEDAQRHRDEKDAALSKQIQMLEIQHNEMKHSLQKEQVDKENMKKHISQLEGEVKKKEAELNAMEKKLKNNRGRGAAMTSRDNEAAKANAKKSKSEMHKGMDAASTGISKSEGSDAERLTKELLNEVAVLKERNTNMETELKEMEERYSEISLKFAEVEGERQQLVMAVRNLKNGKKN*