AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0049790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049790 MtrunA17_Chr4g0057261 97.143 280 8 0 1 280 1 280 0.0 543
Msa0049790 MtrunA17_Chr6g0473621 45.724 304 118 4 20 280 22 321 3.49e-79 243
Msa0049790 MtrunA17_Chr1g0203771 47.902 286 114 5 28 280 18 301 3.45e-76 235
Msa0049790 MtrunA17_Chr2g0285591 39.759 249 114 5 32 279 30 243 1.46e-53 174
Msa0049790 MtrunA17_Chr7g0243051 44.554 202 111 1 32 232 19 220 1.25e-47 158
Msa0049790 MtrunA17_Chr4g0007601 37.179 234 119 2 47 280 19 224 1.62e-40 140
Msa0049790 MtrunA17_Chr6g0458281 41.176 119 61 2 24 136 22 137 2.62e-21 87.8
Msa0049790 MtrunA17_Chr6g0458271 43.810 105 57 1 32 136 38 140 2.92e-21 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049790 AT5G52060.1 46.545 275 119 3 34 280 41 315 1.68e-72 226
Msa0049790 AT5G62100.2 45.238 252 131 3 31 280 14 260 1.16e-66 209
Msa0049790 AT5G07220.1 44.615 260 132 4 32 280 21 279 2.45e-65 206
Msa0049790 AT5G62100.1 43.726 263 130 5 31 280 14 271 1.76e-63 201
Msa0049790 AT5G62100.5 51.087 184 89 1 31 214 14 196 1.05e-56 181
Msa0049790 AT5G62100.4 50.543 184 90 1 31 214 14 196 4.91e-56 180
Msa0049790 AT3G51780.1 35.985 264 124 5 31 279 9 242 6.41e-46 155
Msa0049790 AT5G62100.3 54.412 136 61 1 31 166 14 148 3.72e-44 147
Msa0049790 AT5G62100.6 54.412 136 61 1 31 166 14 148 3.72e-44 147
Msa0049790 AT5G14360.1 40.000 105 60 1 33 137 49 150 1.86e-20 86.3
Msa0049790 AT5G40630.1 39.815 108 62 2 26 132 50 155 1.05e-19 84.3

Find 70 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTATTTGACTTATTATA+TGG 0.159749 1_2:+3291967 Msa0049790:three_prime_UTR
ATTACATTGGATGAAATTTA+TGG 0.207184 1_2:+3291534 Msa0049790:CDS
CTCTAAGGTTACTTCAATTA+AGG 0.213411 1_2:-3291293 None:intergenic
ATTGGTATAATTTAGAAGTT+TGG 0.256429 1_2:-3290545 None:intergenic
CTTAATTGAAGTAACCTTAG+AGG 0.272826 1_2:+3291294 Msa0049790:CDS
CATGAGAACTGATATGAATT+TGG 0.287339 1_2:-3290939 None:intergenic
ATTATACCAATCTTACTCTT+TGG 0.292979 1_2:+3290557 Msa0049790:five_prime_UTR
ATCAGTTCTCATGCAAGTTT+TGG 0.294978 1_2:+3290949 Msa0049790:CDS
GGTTGACAAACTTGCCAAAA+AGG 0.303391 1_2:+3291315 Msa0049790:CDS
GGCAAGTTTGTCAACCTCTA+AGG 0.306312 1_2:-3291308 None:intergenic
AAGATTGCATTTAGTTGCTT+TGG 0.328022 1_2:+3291883 Msa0049790:exon
TTCAGCTCTATTTAATTCAA+TGG 0.336562 1_2:+3292014 Msa0049790:three_prime_UTR
GTTTGGAGTTGGTGGTGTTT+TGG 0.336722 1_2:-3290528 None:intergenic
AGAAATTGCTTTCCTTTGAA+TGG 0.337098 1_2:-3290677 None:intergenic
GAGTAGAGAAAGAAGGATAT+TGG 0.354055 1_2:+3291231 Msa0049790:CDS
TCCTATTTGACTTATTATAT+GGG 0.362984 1_2:+3291968 Msa0049790:three_prime_UTR
ATCAAAGTCAAAGTGAAGTA+TGG 0.369232 1_2:+3290904 Msa0049790:CDS
CTTCACTTTGACTTTGATGA+TGG 0.373301 1_2:-3290899 None:intergenic
AATTCCCATTCAGCTACATT+TGG 0.373777 1_2:-3290817 None:intergenic
GTTGTTCTTTCTTCTTCCCT+AGG 0.373805 1_2:+3290648 Msa0049790:five_prime_UTR
TTAATCAAAAGTTTCCCATT+TGG 0.385906 1_2:-3291862 None:intergenic
TCCCATATAATAAGTCAAAT+AGG 0.395520 1_2:-3291969 None:intergenic
CAATCCAAATGTAGCTGAAT+GGG 0.407553 1_2:+3290813 Msa0049790:CDS
CAAAGACCAAAGAGTAAGAT+TGG 0.430908 1_2:-3290563 None:intergenic
AATTTGGTAGGTTTCAGCTT+TGG 0.444763 1_2:+3291434 Msa0049790:intron
TTTGCTTGATAGAGCTAAAA+GGG 0.445662 1_2:-3290706 None:intergenic
TAACATAACAAAGGAGAGTA+AGG 0.457931 1_2:+3291752 Msa0049790:CDS
ATTTAGAAGTTTGGAGTTGG+TGG 0.458164 1_2:-3290536 None:intergenic
TCAATCCAAATGTAGCTGAA+TGG 0.461891 1_2:+3290812 Msa0049790:CDS
TTGGAGGGTAATGTTTCTAA+AGG 0.464546 1_2:+3291453 Msa0049790:CDS
AAGAATTGCAAAGAAGGAAA+AGG 0.466398 1_2:+3291261 Msa0049790:CDS
GAAATTGCAGAGAAAAGAAC+AGG 0.476993 1_2:+3291569 Msa0049790:CDS
CAGTTGTAGTAACAACCAAA+TGG 0.480586 1_2:+3291847 Msa0049790:CDS
TTGGTAGGTTTCAGCTTTGG+AGG 0.481735 1_2:+3291437 Msa0049790:intron
AGAGAAAAGGAGAAAAGGAA+TGG 0.482493 1_2:-3290422 None:intergenic
GAAATTAAGAATTGCAAAGA+AGG 0.485109 1_2:+3291255 Msa0049790:CDS
CCTTTGAATGGAGGAAACCT+AGG 0.486487 1_2:-3290665 None:intergenic
CCTAGGTTTCCTCCATTCAA+AGG 0.488881 1_2:+3290665 Msa0049790:five_prime_UTR
AGGTGAAGTTATTTCAGAGT+TGG 0.494651 1_2:+3291473 Msa0049790:CDS
AACAATATAGCACAATTATG+AGG 0.503406 1_2:+3290228 None:intergenic
ATAATTTAGAAGTTTGGAGT+TGG 0.511890 1_2:-3290539 None:intergenic
GGTAGAAGAAATTAATGTGA+AGG 0.518137 1_2:-3290257 None:intergenic
AGTTGTAGTAACAACCAAAT+GGG 0.521225 1_2:+3291848 Msa0049790:CDS
AATAGAAGAATGAAAAGGAA+TGG 0.527636 1_2:-3290591 None:intergenic
AACTGATATGAATTTGGTGA+TGG 0.530668 1_2:-3290933 None:intergenic
AAAATGGGAGTGAGTGAGGG+AGG 0.530788 1_2:-3290358 None:intergenic
AGTGAAATAGAAGAATGAAA+AGG 0.536106 1_2:-3290596 None:intergenic
AAAATGTTGACAGAATCAAC+AGG 0.539679 1_2:+3291091 Msa0049790:CDS
AATTGCTTTCCTTTGAATGG+AGG 0.546291 1_2:-3290674 None:intergenic
AGAGACTTTCTATCAAATCA+AGG 0.547417 1_2:+3290324 Msa0049790:five_prime_UTR
GATATTGAGAGAGTCAAAGA+TGG 0.547900 1_2:+3291178 Msa0049790:CDS
TTTCACTTTCACCGACAGCT+AGG 0.553520 1_2:+3290496 Msa0049790:five_prime_UTR
ACATCGAGAGTAGAGAAAGA+AGG 0.558063 1_2:+3291224 Msa0049790:CDS
ACTGACTCAGAATGTTTCAA+AGG 0.560272 1_2:-3291828 None:intergenic
GATGAGAGTATTGATTACAT+TGG 0.562495 1_2:+3291521 Msa0049790:CDS
TTGGATGAAATTTATGGTGA+GGG 0.566235 1_2:+3291540 Msa0049790:CDS
CTTTGAATGGAGGAAACCTA+GGG 0.567548 1_2:-3290664 None:intergenic
AAAACTTGCAATGCAGTCAA+AGG 0.573016 1_2:+3290726 Msa0049790:exon
TGGTAGGTTTCAGCTTTGGA+GGG 0.580586 1_2:+3291438 Msa0049790:intron
ATTTGGATTGACATGAACAT+TGG 0.587267 1_2:-3290800 None:intergenic
GTAGAAGAAATTAATGTGAA+GGG 0.597323 1_2:-3290256 None:intergenic
CCACTCACACATATATAACA+CGG 0.615934 1_2:-3292090 None:intergenic
GGTGAAAACAACCTAGCTGT+CGG 0.625319 1_2:-3290507 None:intergenic
GCTGAATGGGAATTAAGACC+AGG 0.631294 1_2:+3290826 Msa0049790:CDS
ACTGATATGAATTTGGTGAT+GGG 0.633798 1_2:-3290932 None:intergenic
CCGTGTTATATATGTGTGAG+TGG 0.636609 1_2:+3292090 Msa0049790:three_prime_UTR
ATTGGATGAAATTTATGGTG+AGG 0.644553 1_2:+3291539 Msa0049790:CDS
TGCAGTCAAAGGTTACAAAG+AGG 0.668299 1_2:+3290737 Msa0049790:CDS
GAATGGGAATTAAGACCAGG+TGG 0.675489 1_2:+3290829 Msa0049790:CDS
AAATAACAATAACATAACAA+AGG 0.682250 1_2:+3291743 Msa0049790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTCTAAATTTTTAAA+AGG - chr1_2:3290284-3290303 None:intergenic 10.0%
!! TTAAAAATTTAGAAAACAAT+AGG + chr1_2:3290285-3290304 Msa0049790:five_prime_UTR 10.0%
!! ATAAAATAAAATTAATGTGT+AGG + chr1_2:3291659-3291678 Msa0049790:intron 10.0%
!!! TTGTTTTCTAAATTTTTAAA+AGG - chr1_2:3290284-3290303 None:intergenic 10.0%
!! TTAAAAATTTAGAAAACAAT+AGG + chr1_2:3290285-3290304 Msa0049790:five_prime_UTR 10.0%
!! ATAAAATAAAATTAATGTGT+AGG + chr1_2:3291659-3291678 Msa0049790:intron 10.0%
!!! TTTTCTAAATTTTTAAAAGG+AGG - chr1_2:3290281-3290300 None:intergenic 15.0%
!! TTAAAATATGCAAAGTATAA+AGG - chr1_2:3290999-3291018 None:intergenic 15.0%
!! TGATTATTATTGGATTATTA+TGG + chr1_2:3291043-3291062 Msa0049790:intron 15.0%
!! CTAAATAATTCAATGAAATT+TGG + chr1_2:3291418-3291437 Msa0049790:intron 15.0%
!! AAATAACAATAACATAACAA+AGG + chr1_2:3291743-3291762 Msa0049790:CDS 15.0%
!!! TTTTCTAAATTTTTAAAAGG+AGG - chr1_2:3290281-3290300 None:intergenic 15.0%
!! TTAAAATATGCAAAGTATAA+AGG - chr1_2:3290999-3291018 None:intergenic 15.0%
!! TGATTATTATTGGATTATTA+TGG + chr1_2:3291043-3291062 Msa0049790:intron 15.0%
!! CTAAATAATTCAATGAAATT+TGG + chr1_2:3291418-3291437 Msa0049790:intron 15.0%
!! AAATAACAATAACATAACAA+AGG + chr1_2:3291743-3291762 Msa0049790:CDS 15.0%
!! TAGTATATGAAAAAGAGAAA+AGG - chr1_2:3290438-3290457 None:intergenic 20.0%
!! TGAAAGTGAAAAAAACATAA+GGG - chr1_2:3290487-3290506 None:intergenic 20.0%
!! ATTGGTATAATTTAGAAGTT+TGG - chr1_2:3290548-3290567 None:intergenic 20.0%
!! AAGTATAAAGGAAATTCTAA+AGG - chr1_2:3290987-3291006 None:intergenic 20.0%
!!! TGATTGATGATGATTATTAT+TGG + chr1_2:3291033-3291052 Msa0049790:intron 20.0%
!! TTTCAACATTGTAAAAATAG+TGG + chr1_2:3291395-3291414 Msa0049790:intron 20.0%
!! ATAATTCAATGAAATTTGGT+AGG + chr1_2:3291422-3291441 Msa0049790:intron 20.0%
!! ATTACATTGGATGAAATTTA+TGG + chr1_2:3291534-3291553 Msa0049790:CDS 20.0%
!! ATAAAATTAATGTGTAGGTT+AGG + chr1_2:3291664-3291683 Msa0049790:intron 20.0%
!!! TCCTATTTGACTTATTATAT+GGG + chr1_2:3291968-3291987 Msa0049790:three_prime_UTR 20.0%
!! TAGTATATGAAAAAGAGAAA+AGG - chr1_2:3290438-3290457 None:intergenic 20.0%
!! TGAAAGTGAAAAAAACATAA+GGG - chr1_2:3290487-3290506 None:intergenic 20.0%
!! ATTGGTATAATTTAGAAGTT+TGG - chr1_2:3290548-3290567 None:intergenic 20.0%
!! AAGTATAAAGGAAATTCTAA+AGG - chr1_2:3290987-3291006 None:intergenic 20.0%
!!! TGATTGATGATGATTATTAT+TGG + chr1_2:3291033-3291052 Msa0049790:intron 20.0%
!! TTTCAACATTGTAAAAATAG+TGG + chr1_2:3291395-3291414 Msa0049790:intron 20.0%
!! ATAATTCAATGAAATTTGGT+AGG + chr1_2:3291422-3291441 Msa0049790:intron 20.0%
!! ATTACATTGGATGAAATTTA+TGG + chr1_2:3291534-3291553 Msa0049790:CDS 20.0%
!! ATAAAATTAATGTGTAGGTT+AGG + chr1_2:3291664-3291683 Msa0049790:intron 20.0%
!!! TCCTATTTGACTTATTATAT+GGG + chr1_2:3291968-3291987 Msa0049790:three_prime_UTR 20.0%
! GTAGAAGAAATTAATGTGAA+GGG - chr1_2:3290259-3290278 None:intergenic 25.0%
! GTGAAAGTGAAAAAAACATA+AGG - chr1_2:3290488-3290507 None:intergenic 25.0%
!! ATAATTTAGAAGTTTGGAGT+TGG - chr1_2:3290542-3290561 None:intergenic 25.0%
! ATTATACCAATCTTACTCTT+TGG + chr1_2:3290557-3290576 Msa0049790:five_prime_UTR 25.0%
! AATAGAAGAATGAAAAGGAA+TGG - chr1_2:3290594-3290613 None:intergenic 25.0%
! AGTGAAATAGAAGAATGAAA+AGG - chr1_2:3290599-3290618 None:intergenic 25.0%
!! TTGGATTATTATGGTTTTTG+TGG + chr1_2:3291052-3291071 Msa0049790:intron 25.0%
! GAAATTAAGAATTGCAAAGA+AGG + chr1_2:3291255-3291274 Msa0049790:CDS 25.0%
! TTAATCAAAAGTTTCCCATT+TGG - chr1_2:3291865-3291884 None:intergenic 25.0%
!! GTCCTATTTGACTTATTATA+TGG + chr1_2:3291967-3291986 Msa0049790:three_prime_UTR 25.0%
! TCCCATATAATAAGTCAAAT+AGG - chr1_2:3291972-3291991 None:intergenic 25.0%
! TTCAGCTCTATTTAATTCAA+TGG + chr1_2:3292014-3292033 Msa0049790:three_prime_UTR 25.0%
! GTAGAAGAAATTAATGTGAA+GGG - chr1_2:3290259-3290278 None:intergenic 25.0%
! GTGAAAGTGAAAAAAACATA+AGG - chr1_2:3290488-3290507 None:intergenic 25.0%
!! ATAATTTAGAAGTTTGGAGT+TGG - chr1_2:3290542-3290561 None:intergenic 25.0%
! ATTATACCAATCTTACTCTT+TGG + chr1_2:3290557-3290576 Msa0049790:five_prime_UTR 25.0%
! AATAGAAGAATGAAAAGGAA+TGG - chr1_2:3290594-3290613 None:intergenic 25.0%
! AGTGAAATAGAAGAATGAAA+AGG - chr1_2:3290599-3290618 None:intergenic 25.0%
!! TTGGATTATTATGGTTTTTG+TGG + chr1_2:3291052-3291071 Msa0049790:intron 25.0%
! GAAATTAAGAATTGCAAAGA+AGG + chr1_2:3291255-3291274 Msa0049790:CDS 25.0%
! TTAATCAAAAGTTTCCCATT+TGG - chr1_2:3291865-3291884 None:intergenic 25.0%
!! GTCCTATTTGACTTATTATA+TGG + chr1_2:3291967-3291986 Msa0049790:three_prime_UTR 25.0%
! TCCCATATAATAAGTCAAAT+AGG - chr1_2:3291972-3291991 None:intergenic 25.0%
! TTCAGCTCTATTTAATTCAA+TGG + chr1_2:3292014-3292033 Msa0049790:three_prime_UTR 25.0%
GGTAGAAGAAATTAATGTGA+AGG - chr1_2:3290260-3290279 None:intergenic 30.0%
AGAGACTTTCTATCAAATCA+AGG + chr1_2:3290324-3290343 Msa0049790:five_prime_UTR 30.0%
AGAACGTAAAGAGCAAAAAT+GGG - chr1_2:3290376-3290395 None:intergenic 30.0%
AAGAACGTAAAGAGCAAAAA+TGG - chr1_2:3290377-3290396 None:intergenic 30.0%
GAAAAAGAGAAAAGGAGAAA+AGG - chr1_2:3290430-3290449 None:intergenic 30.0%
! ATAAGCTTTTGAACAAGTCA+AGG + chr1_2:3290626-3290645 Msa0049790:five_prime_UTR 30.0%
AGAAATTGCTTTCCTTTGAA+TGG - chr1_2:3290680-3290699 None:intergenic 30.0%
TTTGCTTGATAGAGCTAAAA+GGG - chr1_2:3290709-3290728 None:intergenic 30.0%
! TTTTGCTTGATAGAGCTAAA+AGG - chr1_2:3290710-3290729 None:intergenic 30.0%
! AACGATCAACATGTTTTCAA+GGG + chr1_2:3290762-3290781 Msa0049790:CDS 30.0%
ATTTGGATTGACATGAACAT+TGG - chr1_2:3290803-3290822 None:intergenic 30.0%
ATCAAAGTCAAAGTGAAGTA+TGG + chr1_2:3290904-3290923 Msa0049790:CDS 30.0%
! ACTGATATGAATTTGGTGAT+GGG - chr1_2:3290935-3290954 None:intergenic 30.0%
! AACTGATATGAATTTGGTGA+TGG - chr1_2:3290936-3290955 None:intergenic 30.0%
CATGAGAACTGATATGAATT+TGG - chr1_2:3290942-3290961 None:intergenic 30.0%
! TATTATGGTTTTTGTGGTGT+AGG + chr1_2:3291058-3291077 Msa0049790:intron 30.0%
! ATTATGGTTTTTGTGGTGTA+GGG + chr1_2:3291059-3291078 Msa0049790:intron 30.0%
AAAATGTTGACAGAATCAAC+AGG + chr1_2:3291091-3291110 Msa0049790:CDS 30.0%
AAGAATTGCAAAGAAGGAAA+AGG + chr1_2:3291261-3291280 Msa0049790:CDS 30.0%
!! CTCTAAGGTTACTTCAATTA+AGG - chr1_2:3291296-3291315 None:intergenic 30.0%
CTTAATTGAAGTAACCTTAG+AGG + chr1_2:3291294-3291313 Msa0049790:CDS 30.0%
! CACATTATTGTGTACCTTTT+TGG - chr1_2:3291332-3291351 None:intergenic 30.0%
!! GATGAGAGTATTGATTACAT+TGG + chr1_2:3291521-3291540 Msa0049790:CDS 30.0%
ATTGGATGAAATTTATGGTG+AGG + chr1_2:3291539-3291558 Msa0049790:CDS 30.0%
TTGGATGAAATTTATGGTGA+GGG + chr1_2:3291540-3291559 Msa0049790:CDS 30.0%
CAGTTATGAAAACAAAGAGT+TGG - chr1_2:3291598-3291617 None:intergenic 30.0%
!!! CAACTCTTTGTTTTCATAAC+TGG + chr1_2:3291596-3291615 Msa0049790:intron 30.0%
TAACATAACAAAGGAGAGTA+AGG + chr1_2:3291752-3291771 Msa0049790:CDS 30.0%
AGTTGTAGTAACAACCAAAT+GGG + chr1_2:3291848-3291867 Msa0049790:CDS 30.0%
AAGATTGCATTTAGTTGCTT+TGG + chr1_2:3291883-3291902 Msa0049790:exon 30.0%
GGTAGAAGAAATTAATGTGA+AGG - chr1_2:3290260-3290279 None:intergenic 30.0%
AGAGACTTTCTATCAAATCA+AGG + chr1_2:3290324-3290343 Msa0049790:five_prime_UTR 30.0%
AGAACGTAAAGAGCAAAAAT+GGG - chr1_2:3290376-3290395 None:intergenic 30.0%
AAGAACGTAAAGAGCAAAAA+TGG - chr1_2:3290377-3290396 None:intergenic 30.0%
GAAAAAGAGAAAAGGAGAAA+AGG - chr1_2:3290430-3290449 None:intergenic 30.0%
! ATAAGCTTTTGAACAAGTCA+AGG + chr1_2:3290626-3290645 Msa0049790:five_prime_UTR 30.0%
AGAAATTGCTTTCCTTTGAA+TGG - chr1_2:3290680-3290699 None:intergenic 30.0%
TTTGCTTGATAGAGCTAAAA+GGG - chr1_2:3290709-3290728 None:intergenic 30.0%
! TTTTGCTTGATAGAGCTAAA+AGG - chr1_2:3290710-3290729 None:intergenic 30.0%
! AACGATCAACATGTTTTCAA+GGG + chr1_2:3290762-3290781 Msa0049790:CDS 30.0%
ATTTGGATTGACATGAACAT+TGG - chr1_2:3290803-3290822 None:intergenic 30.0%
ATCAAAGTCAAAGTGAAGTA+TGG + chr1_2:3290904-3290923 Msa0049790:CDS 30.0%
! ACTGATATGAATTTGGTGAT+GGG - chr1_2:3290935-3290954 None:intergenic 30.0%
! AACTGATATGAATTTGGTGA+TGG - chr1_2:3290936-3290955 None:intergenic 30.0%
CATGAGAACTGATATGAATT+TGG - chr1_2:3290942-3290961 None:intergenic 30.0%
! TATTATGGTTTTTGTGGTGT+AGG + chr1_2:3291058-3291077 Msa0049790:intron 30.0%
! ATTATGGTTTTTGTGGTGTA+GGG + chr1_2:3291059-3291078 Msa0049790:intron 30.0%
AAAATGTTGACAGAATCAAC+AGG + chr1_2:3291091-3291110 Msa0049790:CDS 30.0%
AAGAATTGCAAAGAAGGAAA+AGG + chr1_2:3291261-3291280 Msa0049790:CDS 30.0%
!! CTCTAAGGTTACTTCAATTA+AGG - chr1_2:3291296-3291315 None:intergenic 30.0%
CTTAATTGAAGTAACCTTAG+AGG + chr1_2:3291294-3291313 Msa0049790:CDS 30.0%
! CACATTATTGTGTACCTTTT+TGG - chr1_2:3291332-3291351 None:intergenic 30.0%
!! GATGAGAGTATTGATTACAT+TGG + chr1_2:3291521-3291540 Msa0049790:CDS 30.0%
ATTGGATGAAATTTATGGTG+AGG + chr1_2:3291539-3291558 Msa0049790:CDS 30.0%
TTGGATGAAATTTATGGTGA+GGG + chr1_2:3291540-3291559 Msa0049790:CDS 30.0%
CAGTTATGAAAACAAAGAGT+TGG - chr1_2:3291598-3291617 None:intergenic 30.0%
!!! CAACTCTTTGTTTTCATAAC+TGG + chr1_2:3291596-3291615 Msa0049790:intron 30.0%
TAACATAACAAAGGAGAGTA+AGG + chr1_2:3291752-3291771 Msa0049790:CDS 30.0%
AGTTGTAGTAACAACCAAAT+GGG + chr1_2:3291848-3291867 Msa0049790:CDS 30.0%
AAGATTGCATTTAGTTGCTT+TGG + chr1_2:3291883-3291902 Msa0049790:exon 30.0%
AGAGAAAAGGAGAAAAGGAA+TGG - chr1_2:3290425-3290444 None:intergenic 35.0%
! ATTTAGAAGTTTGGAGTTGG+TGG - chr1_2:3290539-3290558 None:intergenic 35.0%
CAAAGACCAAAGAGTAAGAT+TGG - chr1_2:3290566-3290585 None:intergenic 35.0%
AATTGCTTTCCTTTGAATGG+AGG - chr1_2:3290677-3290696 None:intergenic 35.0%
AAAACTTGCAATGCAGTCAA+AGG + chr1_2:3290726-3290745 Msa0049790:exon 35.0%
! CAACGATCAACATGTTTTCA+AGG + chr1_2:3290761-3290780 Msa0049790:CDS 35.0%
TCAATCCAAATGTAGCTGAA+TGG + chr1_2:3290812-3290831 Msa0049790:CDS 35.0%
CAATCCAAATGTAGCTGAAT+GGG + chr1_2:3290813-3290832 Msa0049790:CDS 35.0%
AATTCCCATTCAGCTACATT+TGG - chr1_2:3290820-3290839 None:intergenic 35.0%
! CTTCACTTTGACTTTGATGA+TGG - chr1_2:3290902-3290921 None:intergenic 35.0%
! ATCAGTTCTCATGCAAGTTT+TGG + chr1_2:3290949-3290968 Msa0049790:CDS 35.0%
! TTATGGTTTTTGTGGTGTAG+GGG + chr1_2:3291060-3291079 Msa0049790:intron 35.0%
GATATTGAGAGAGTCAAAGA+TGG + chr1_2:3291178-3291197 Msa0049790:CDS 35.0%
GAGTAGAGAAAGAAGGATAT+TGG + chr1_2:3291231-3291250 Msa0049790:CDS 35.0%
AATTTGGTAGGTTTCAGCTT+TGG + chr1_2:3291434-3291453 Msa0049790:intron 35.0%
! TTGGAGGGTAATGTTTCTAA+AGG + chr1_2:3291453-3291472 Msa0049790:CDS 35.0%
! AGGTGAAGTTATTTCAGAGT+TGG + chr1_2:3291473-3291492 Msa0049790:CDS 35.0%
GAAATTGCAGAGAAAAGAAC+AGG + chr1_2:3291569-3291588 Msa0049790:CDS 35.0%
! ACTGACTCAGAATGTTTCAA+AGG - chr1_2:3291831-3291850 None:intergenic 35.0%
CAGTTGTAGTAACAACCAAA+TGG + chr1_2:3291847-3291866 Msa0049790:CDS 35.0%
CCACTCACACATATATAACA+CGG - chr1_2:3292093-3292112 None:intergenic 35.0%
AGAGAAAAGGAGAAAAGGAA+TGG - chr1_2:3290425-3290444 None:intergenic 35.0%
! ATTTAGAAGTTTGGAGTTGG+TGG - chr1_2:3290539-3290558 None:intergenic 35.0%
CAAAGACCAAAGAGTAAGAT+TGG - chr1_2:3290566-3290585 None:intergenic 35.0%
AATTGCTTTCCTTTGAATGG+AGG - chr1_2:3290677-3290696 None:intergenic 35.0%
AAAACTTGCAATGCAGTCAA+AGG + chr1_2:3290726-3290745 Msa0049790:exon 35.0%
! CAACGATCAACATGTTTTCA+AGG + chr1_2:3290761-3290780 Msa0049790:CDS 35.0%
TCAATCCAAATGTAGCTGAA+TGG + chr1_2:3290812-3290831 Msa0049790:CDS 35.0%
CAATCCAAATGTAGCTGAAT+GGG + chr1_2:3290813-3290832 Msa0049790:CDS 35.0%
AATTCCCATTCAGCTACATT+TGG - chr1_2:3290820-3290839 None:intergenic 35.0%
! CTTCACTTTGACTTTGATGA+TGG - chr1_2:3290902-3290921 None:intergenic 35.0%
! ATCAGTTCTCATGCAAGTTT+TGG + chr1_2:3290949-3290968 Msa0049790:CDS 35.0%
! TTATGGTTTTTGTGGTGTAG+GGG + chr1_2:3291060-3291079 Msa0049790:intron 35.0%
GATATTGAGAGAGTCAAAGA+TGG + chr1_2:3291178-3291197 Msa0049790:CDS 35.0%
GAGTAGAGAAAGAAGGATAT+TGG + chr1_2:3291231-3291250 Msa0049790:CDS 35.0%
AATTTGGTAGGTTTCAGCTT+TGG + chr1_2:3291434-3291453 Msa0049790:intron 35.0%
! TTGGAGGGTAATGTTTCTAA+AGG + chr1_2:3291453-3291472 Msa0049790:CDS 35.0%
! AGGTGAAGTTATTTCAGAGT+TGG + chr1_2:3291473-3291492 Msa0049790:CDS 35.0%
GAAATTGCAGAGAAAAGAAC+AGG + chr1_2:3291569-3291588 Msa0049790:CDS 35.0%
! ACTGACTCAGAATGTTTCAA+AGG - chr1_2:3291831-3291850 None:intergenic 35.0%
CAGTTGTAGTAACAACCAAA+TGG + chr1_2:3291847-3291866 Msa0049790:CDS 35.0%
CCACTCACACATATATAACA+CGG - chr1_2:3292093-3292112 None:intergenic 35.0%
GTTGTTCTTTCTTCTTCCCT+AGG + chr1_2:3290648-3290667 Msa0049790:five_prime_UTR 40.0%
CTTTGAATGGAGGAAACCTA+GGG - chr1_2:3290667-3290686 None:intergenic 40.0%
TGCAGTCAAAGGTTACAAAG+AGG + chr1_2:3290737-3290756 Msa0049790:CDS 40.0%
! TTTTGTACTAGCATTCCACC+TGG - chr1_2:3290847-3290866 None:intergenic 40.0%
ACATCGAGAGTAGAGAAAGA+AGG + chr1_2:3291224-3291243 Msa0049790:CDS 40.0%
GGTTGACAAACTTGCCAAAA+AGG + chr1_2:3291315-3291334 Msa0049790:CDS 40.0%
CCGTGTTATATATGTGTGAG+TGG + chr1_2:3292090-3292109 Msa0049790:three_prime_UTR 40.0%
AGGGAAACACCTCATAATTG+TGG - chr1_2:3290240-3290259 None:intergenic 40.0%
GTTGTTCTTTCTTCTTCCCT+AGG + chr1_2:3290648-3290667 Msa0049790:five_prime_UTR 40.0%
CTTTGAATGGAGGAAACCTA+GGG - chr1_2:3290667-3290686 None:intergenic 40.0%
TGCAGTCAAAGGTTACAAAG+AGG + chr1_2:3290737-3290756 Msa0049790:CDS 40.0%
! TTTTGTACTAGCATTCCACC+TGG - chr1_2:3290847-3290866 None:intergenic 40.0%
ACATCGAGAGTAGAGAAAGA+AGG + chr1_2:3291224-3291243 Msa0049790:CDS 40.0%
GGTTGACAAACTTGCCAAAA+AGG + chr1_2:3291315-3291334 Msa0049790:CDS 40.0%
CCGTGTTATATATGTGTGAG+TGG + chr1_2:3292090-3292109 Msa0049790:three_prime_UTR 40.0%
GCAAAAATGGGAGTGAGTGA+GGG - chr1_2:3290364-3290383 None:intergenic 45.0%
AGCAAAAATGGGAGTGAGTG+AGG - chr1_2:3290365-3290384 None:intergenic 45.0%
TTTCACTTTCACCGACAGCT+AGG + chr1_2:3290496-3290515 Msa0049790:five_prime_UTR 45.0%
GGTGAAAACAACCTAGCTGT+CGG - chr1_2:3290510-3290529 None:intergenic 45.0%
!!! GTTTGGAGTTGGTGGTGTTT+TGG - chr1_2:3290531-3290550 None:intergenic 45.0%
CCTTTGAATGGAGGAAACCT+AGG - chr1_2:3290668-3290687 None:intergenic 45.0%
CCTAGGTTTCCTCCATTCAA+AGG + chr1_2:3290665-3290684 Msa0049790:five_prime_UTR 45.0%
GCTGAATGGGAATTAAGACC+AGG + chr1_2:3290826-3290845 Msa0049790:CDS 45.0%
GAATGGGAATTAAGACCAGG+TGG + chr1_2:3290829-3290848 Msa0049790:CDS 45.0%
GGCAAGTTTGTCAACCTCTA+AGG - chr1_2:3291311-3291330 None:intergenic 45.0%
! TTGGTAGGTTTCAGCTTTGG+AGG + chr1_2:3291437-3291456 Msa0049790:intron 45.0%
!! TGGTAGGTTTCAGCTTTGGA+GGG + chr1_2:3291438-3291457 Msa0049790:intron 45.0%
GCAAAAATGGGAGTGAGTGA+GGG - chr1_2:3290364-3290383 None:intergenic 45.0%
AGCAAAAATGGGAGTGAGTG+AGG - chr1_2:3290365-3290384 None:intergenic 45.0%
TTTCACTTTCACCGACAGCT+AGG + chr1_2:3290496-3290515 Msa0049790:five_prime_UTR 45.0%
GGTGAAAACAACCTAGCTGT+CGG - chr1_2:3290510-3290529 None:intergenic 45.0%
!!! GTTTGGAGTTGGTGGTGTTT+TGG - chr1_2:3290531-3290550 None:intergenic 45.0%
CCTTTGAATGGAGGAAACCT+AGG - chr1_2:3290668-3290687 None:intergenic 45.0%
CCTAGGTTTCCTCCATTCAA+AGG + chr1_2:3290665-3290684 Msa0049790:five_prime_UTR 45.0%
GCTGAATGGGAATTAAGACC+AGG + chr1_2:3290826-3290845 Msa0049790:CDS 45.0%
GAATGGGAATTAAGACCAGG+TGG + chr1_2:3290829-3290848 Msa0049790:CDS 45.0%
GGCAAGTTTGTCAACCTCTA+AGG - chr1_2:3291311-3291330 None:intergenic 45.0%
! TTGGTAGGTTTCAGCTTTGG+AGG + chr1_2:3291437-3291456 Msa0049790:intron 45.0%
!! TGGTAGGTTTCAGCTTTGGA+GGG + chr1_2:3291438-3291457 Msa0049790:intron 45.0%
AAAATGGGAGTGAGTGAGGG+AGG - chr1_2:3290361-3290380 None:intergenic 50.0%
AAAATGGGAGTGAGTGAGGG+AGG - chr1_2:3290361-3290380 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 3290238 3292122 3290238 ID=Msa0049790;Name=Msa0049790
chr1_2 mRNA 3290238 3292122 3290238 ID=Msa0049790-mRNA-1;Parent=Msa0049790;Name=Msa0049790-mRNA-1;_AED=0.06;_eAED=0.06;_QI=498|1|1|1|1|1|4|238|280
chr1_2 exon 3290238 3290970 3290238 ID=Msa0049790-mRNA-1:exon:808;Parent=Msa0049790-mRNA-1
chr1_2 exon 3291080 3291336 3291080 ID=Msa0049790-mRNA-1:exon:809;Parent=Msa0049790-mRNA-1
chr1_2 exon 3291444 3291590 3291444 ID=Msa0049790-mRNA-1:exon:810;Parent=Msa0049790-mRNA-1
chr1_2 exon 3291681 3292122 3291681 ID=Msa0049790-mRNA-1:exon:811;Parent=Msa0049790-mRNA-1
chr1_2 five_prime_UTR 3290238 3290735 3290238 ID=Msa0049790-mRNA-1:five_prime_utr;Parent=Msa0049790-mRNA-1
chr1_2 CDS 3290736 3290970 3290736 ID=Msa0049790-mRNA-1:cds;Parent=Msa0049790-mRNA-1
chr1_2 CDS 3291080 3291336 3291080 ID=Msa0049790-mRNA-1:cds;Parent=Msa0049790-mRNA-1
chr1_2 CDS 3291444 3291590 3291444 ID=Msa0049790-mRNA-1:cds;Parent=Msa0049790-mRNA-1
chr1_2 CDS 3291681 3291884 3291681 ID=Msa0049790-mRNA-1:cds;Parent=Msa0049790-mRNA-1
chr1_2 three_prime_UTR 3291885 3292122 3291885 ID=Msa0049790-mRNA-1:three_prime_utr;Parent=Msa0049790-mRNA-1
Gene Sequence

>Msa0049790

ATGCAGTCAAAGGTTACAAAGAGGTCAACGATCAACATGTTTTCAAGGGACAAAAAAAGTGACACCAATGTTCATGTCAATCCAAATGTAGCTGAATGGGAATTAAGACCAGGTGGAATGCTAGTACAAAAACGTAATTCAGATGTGAATGATAATTTTTCATCCATCATCAAAGTCAAAGTGAAGTATGGCTCATCCCATCACCAAATTCATATCAGTTCTCATGCAAGTTTTGGGGAATTGAAGAAAATGTTGACAGAATCAACAGGATTGCATGTTCAAGATCAGAAGTTGATTTTCAAGAAAAAAGAGAGAGACTCAAAGTCATATCTTGATATTGAGAGAGTCAAAGATGGATCAAAGTTGATTTTAATTGAAGACATCGAGAGTAGAGAAAGAAGGATATTGGAGAAATTAAGAATTGCAAAGAAGGAAAAGGCTTCAAAATCCTTAATTGAAGTAACCTTAGAGGTTGACAAACTTGCCAAAAAGGTTTCAGCTTTGGAGGGTAATGTTTCTAAAGGTGAAGTTATTTCAGAGTTGGATGTAGAGAGTTTAACAGAAAATTTGATGAGAGTATTGATTACATTGGATGAAATTTATGGTGAGGGTGAACTGAAATTGCAGAGAAAAGAACAGGTTAGGAGAGTTCAGAAGCACATTGAGACTCTTGATATGTTAAAGATGTCAAAGTCAATTGAAAATAACAATAACATAACAAAGGAGAGTAAGGTTGATTGTGATGTTCAAAAGCAGCATTTGCAAGAGAAGCAACAAGAACAACAACCTTTGAAACATTCTGAGTCAGTTGTAGTAACAACCAAATGGGAAACTTTTGATTAA

Protein sequence

>Msa0049790

MQSKVTKRSTINMFSRDKKSDTNVHVNPNVAEWELRPGGMLVQKRNSDVNDNFSSIIKVKVKYGSSHHQIHISSHASFGELKKMLTESTGLHVQDQKLIFKKKERDSKSYLDIERVKDGSKLILIEDIESRERRILEKLRIAKKEKASKSLIEVTLEVDKLAKKVSALEGNVSKGEVISELDVESLTENLMRVLITLDEIYGEGELKLQRKEQVRRVQKHIETLDMLKMSKSIENNNNITKESKVDCDVQKQHLQEKQQEQQPLKHSESVVVTTKWETFD*