AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1208160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208160 MtrunA17_Chr4g0057261 96.786 280 9 0 1 280 1 280 0.0 542
Msa1208160 MtrunA17_Chr6g0473621 45.724 304 118 4 20 280 22 321 3.49e-79 243
Msa1208160 MtrunA17_Chr1g0203771 47.902 286 114 5 28 280 18 301 2.84e-76 235
Msa1208160 MtrunA17_Chr2g0285591 39.759 249 114 5 32 279 30 243 1.35e-53 174
Msa1208160 MtrunA17_Chr7g0243051 44.554 202 111 1 32 232 19 220 1.25e-47 158
Msa1208160 MtrunA17_Chr4g0007601 37.179 234 119 2 47 280 19 224 1.66e-40 140
Msa1208160 MtrunA17_Chr6g0458281 41.176 119 61 2 24 136 22 137 2.71e-21 87.8
Msa1208160 MtrunA17_Chr6g0458271 43.810 105 57 1 32 136 38 140 3.17e-21 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208160 AT5G52060.1 46.545 275 119 3 34 280 41 315 1.26e-72 226
Msa1208160 AT5G62100.2 45.238 252 131 3 31 280 14 260 9.40e-67 209
Msa1208160 AT5G07220.1 44.615 260 132 4 32 280 21 279 2.25e-65 207
Msa1208160 AT5G62100.1 43.726 263 130 5 31 280 14 271 1.87e-63 201
Msa1208160 AT5G62100.5 51.087 184 89 1 31 214 14 196 1.06e-56 181
Msa1208160 AT5G62100.4 50.543 184 90 1 31 214 14 196 4.55e-56 180
Msa1208160 AT3G51780.1 35.985 264 124 5 31 279 9 242 5.76e-46 155
Msa1208160 AT5G62100.3 54.412 136 61 1 31 166 14 148 3.80e-44 147
Msa1208160 AT5G62100.6 54.412 136 61 1 31 166 14 148 3.80e-44 147
Msa1208160 AT5G14360.1 40.000 105 60 1 33 137 49 150 1.98e-20 86.3
Msa1208160 AT5G40630.1 39.815 108 62 2 26 132 50 155 1.00e-19 84.3

Find 69 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTATTTGACTTATTATA+TGG 0.159749 8_1:-66138384 Msa1208160:three_prime_UTR
ATTACATTGGATGAAATTTA+TGG 0.207184 8_1:-66138817 Msa1208160:CDS
CTCTAAGGTTACTTCAATTA+AGG 0.213411 8_1:+66139058 None:intergenic
ATTGGTATAATTTAGAAGTT+TGG 0.256429 8_1:+66139807 None:intergenic
TTATACCAATCTTACTCTTT+TGG 0.272341 8_1:-66139794 Msa1208160:five_prime_UTR
CTTAATTGAAGTAACCTTAG+AGG 0.272826 8_1:-66139057 Msa1208160:CDS
CATGAGAACTGATATGAATT+TGG 0.287339 8_1:+66139412 None:intergenic
ATCAGTTCTCATGCAAGTTT+TGG 0.294978 8_1:-66139402 Msa1208160:intron
GGTTGACAAACTTGCCAAAA+AGG 0.303391 8_1:-66139036 Msa1208160:intron
GGCAAGTTTGTCAACCTCTA+AGG 0.306312 8_1:+66139043 None:intergenic
AAGATTGCATTTAGTTGCTT+TGG 0.328022 8_1:-66138468 Msa1208160:three_prime_UTR
TTCAGCTCTATTTAATTCAA+TGG 0.336562 8_1:-66138337 Msa1208160:three_prime_UTR
GTTTGGAGTTGGTGGTGTTT+TGG 0.336722 8_1:+66139824 None:intergenic
AGAAATTGCTTTCCTTTGAA+TGG 0.337098 8_1:+66139674 None:intergenic
GAGTAGAGAAAGAAGGATAT+TGG 0.354055 8_1:-66139120 Msa1208160:CDS
TCCTATTTGACTTATTATAT+GGG 0.362984 8_1:-66138383 Msa1208160:three_prime_UTR
ATCAAAGTCAAAGTGAAGTA+TGG 0.369232 8_1:-66139447 Msa1208160:CDS
CTTCACTTTGACTTTGATGA+TGG 0.373301 8_1:+66139452 None:intergenic
AATTCCCATTCAGCTACATT+TGG 0.373777 8_1:+66139534 None:intergenic
GTTGTTCTTTCTTCTTCCCT+AGG 0.373805 8_1:-66139703 Msa1208160:five_prime_UTR
TTAATCAAAAGTTTCCCATT+TGG 0.385906 8_1:+66138489 None:intergenic
TCCCATATAATAAGTCAAAT+AGG 0.395520 8_1:+66138382 None:intergenic
CAATCCAAATGTAGCTGAAT+GGG 0.407553 8_1:-66139538 Msa1208160:CDS
AAAGACCAAAAGAGTAAGAT+TGG 0.428824 8_1:+66139789 None:intergenic
AATTTGGTAGGTTTCAGCTT+TGG 0.444763 8_1:-66138917 Msa1208160:intron
TTTGCTTGATAGAGCTAAAA+GGG 0.445662 8_1:+66139645 None:intergenic
TAACATAACAAAGGAGAGTA+AGG 0.457931 8_1:-66138599 Msa1208160:CDS
ATTTAGAAGTTTGGAGTTGG+TGG 0.458164 8_1:+66139816 None:intergenic
TCAATCCAAATGTAGCTGAA+TGG 0.461891 8_1:-66139539 Msa1208160:CDS
TTGGAGGGTAATGTTTCTAA+AGG 0.464546 8_1:-66138898 Msa1208160:CDS
AAGAATTGCAAAGAAGGAAA+AGG 0.466398 8_1:-66139090 Msa1208160:CDS
GAAATTGCAGAGAAAAGAAC+AGG 0.476993 8_1:-66138782 Msa1208160:intron
CAGTTGTAGTAACAACCAAA+TGG 0.480586 8_1:-66138504 Msa1208160:CDS
TTGGTAGGTTTCAGCTTTGG+AGG 0.481735 8_1:-66138914 Msa1208160:intron
AGAGAAAAGGAGAAAAGGAA+TGG 0.482493 8_1:+66139930 None:intergenic
GAAATTAAGAATTGCAAAGA+AGG 0.485109 8_1:-66139096 Msa1208160:CDS
CCTTTGAATGGAGGAAACCT+AGG 0.486487 8_1:+66139686 None:intergenic
CCTAGGTTTCCTCCATTCAA+AGG 0.488881 8_1:-66139686 Msa1208160:five_prime_UTR
AGGTGAAGTTATTTCAGAGT+TGG 0.494651 8_1:-66138878 Msa1208160:CDS
AACAATATAGCACAATTATG+AGG 0.503406 8_1:-66140124 None:intergenic
ATAATTTAGAAGTTTGGAGT+TGG 0.511890 8_1:+66139813 None:intergenic
GGTAGAAGAAATTAATGTGA+AGG 0.518137 8_1:+66140095 None:intergenic
AGTTGTAGTAACAACCAAAT+GGG 0.521225 8_1:-66138503 Msa1208160:CDS
AATAGAAGAATGAAAAGGAA+TGG 0.527636 8_1:+66139760 None:intergenic
AACTGATATGAATTTGGTGA+TGG 0.530668 8_1:+66139418 None:intergenic
AAAATGGGAGTGAGTGAGGG+AGG 0.530788 8_1:+66139994 None:intergenic
AGTGAAATAGAAGAATGAAA+AGG 0.536106 8_1:+66139755 None:intergenic
AAAATGTTGACAGAATCAAC+AGG 0.539679 8_1:-66139260 Msa1208160:CDS
AATTGCTTTCCTTTGAATGG+AGG 0.546291 8_1:+66139677 None:intergenic
AGAGACTTTCTATCAAATCA+AGG 0.547417 8_1:-66140028 Msa1208160:five_prime_UTR
GATATTGAGAGAGTCAAAGA+TGG 0.547900 8_1:-66139173 Msa1208160:CDS
TTTCACTTTCACCGACAGCT+AGG 0.553520 8_1:-66139856 Msa1208160:five_prime_UTR
ACATCGAGAGTAGAGAAAGA+AGG 0.558063 8_1:-66139127 Msa1208160:CDS
ACTGACTCAGAATGTTTCAA+AGG 0.560272 8_1:+66138523 None:intergenic
GATGAGAGTATTGATTACAT+TGG 0.562495 8_1:-66138830 Msa1208160:CDS
TTGGATGAAATTTATGGTGA+GGG 0.566235 8_1:-66138811 Msa1208160:CDS
CTTTGAATGGAGGAAACCTA+GGG 0.567548 8_1:+66139687 None:intergenic
AAAACTTGCAATGCAGTCAA+AGG 0.573016 8_1:-66139625 Msa1208160:exon
TGGTAGGTTTCAGCTTTGGA+GGG 0.580586 8_1:-66138913 Msa1208160:intron
ATTTGGATTGACATGAACAT+TGG 0.587267 8_1:+66139551 None:intergenic
GTAGAAGAAATTAATGTGAA+GGG 0.597323 8_1:+66140096 None:intergenic
CCACTCACACATATATAACA+CGG 0.615934 8_1:+66138261 None:intergenic
GGTGAAAACAACCTAGCTGT+CGG 0.625319 8_1:+66139845 None:intergenic
GCTGAATGGGAATTAAGACC+AGG 0.631294 8_1:-66139525 Msa1208160:CDS
ACTGATATGAATTTGGTGAT+GGG 0.633798 8_1:+66139419 None:intergenic
CCGTGTTATATATGTGTGAG+TGG 0.636609 8_1:-66138261 Msa1208160:three_prime_UTR
ATTGGATGAAATTTATGGTG+AGG 0.644553 8_1:-66138812 Msa1208160:CDS
GAATGGGAATTAAGACCAGG+TGG 0.675489 8_1:-66139522 Msa1208160:CDS
AAATAACAATAACATAACAA+AGG 0.682250 8_1:-66138608 Msa1208160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTCTAAATTTTTAAA+AGG + chr8_1:66138297-66138316 None:intergenic 10.0%
!! TTAAAAATTTAGAAAACAAT+AGG - chr8_1:66138298-66138317 Msa1208160:three_prime_UTR 10.0%
!! ATAAAATAAAATTAATGTGT+AGG - chr8_1:66139673-66139692 Msa1208160:five_prime_UTR 10.0%
!!! TTGTTTTCTAAATTTTTAAA+AGG + chr8_1:66138297-66138316 None:intergenic 10.0%
!! TTAAAAATTTAGAAAACAAT+AGG - chr8_1:66138298-66138317 Msa1208160:three_prime_UTR 10.0%
!! ATAAAATAAAATTAATGTGT+AGG - chr8_1:66139673-66139692 Msa1208160:five_prime_UTR 10.0%
!!! TTTTCTAAATTTTTAAAAGG+AGG + chr8_1:66138294-66138313 None:intergenic 15.0%
!! TTAAAATATGCAAAGTATAA+AGG + chr8_1:66139013-66139032 None:intergenic 15.0%
!! TGATTATTATTGGATTATTA+TGG - chr8_1:66139057-66139076 Msa1208160:CDS 15.0%
!! CTAAATAATTCAATGAAATT+TGG - chr8_1:66139432-66139451 Msa1208160:CDS 15.0%
!! AAATAACAATAACATAACAA+AGG - chr8_1:66139757-66139776 Msa1208160:five_prime_UTR 15.0%
!!! TTTTCTAAATTTTTAAAAGG+AGG + chr8_1:66138294-66138313 None:intergenic 15.0%
!! TTAAAATATGCAAAGTATAA+AGG + chr8_1:66139013-66139032 None:intergenic 15.0%
!! TGATTATTATTGGATTATTA+TGG - chr8_1:66139057-66139076 Msa1208160:CDS 15.0%
!! CTAAATAATTCAATGAAATT+TGG - chr8_1:66139432-66139451 Msa1208160:CDS 15.0%
!! AAATAACAATAACATAACAA+AGG - chr8_1:66139757-66139776 Msa1208160:five_prime_UTR 15.0%
!! TAGTATATGAAAAAGAGAAA+AGG + chr8_1:66138451-66138470 None:intergenic 20.0%
!! TGAAAGTGAAAAAAACATAA+GGG + chr8_1:66138500-66138519 None:intergenic 20.0%
!! ATTGGTATAATTTAGAAGTT+TGG + chr8_1:66138561-66138580 None:intergenic 20.0%
!! AAGTATAAAGGAAATTCTAA+AGG + chr8_1:66139001-66139020 None:intergenic 20.0%
!!! TGATTGATGATGATTATTAT+TGG - chr8_1:66139047-66139066 Msa1208160:CDS 20.0%
!! TTTCAACATTGTAAAAATAG+TGG - chr8_1:66139409-66139428 Msa1208160:CDS 20.0%
!! ATAATTCAATGAAATTTGGT+AGG - chr8_1:66139436-66139455 Msa1208160:CDS 20.0%
!! ATTACATTGGATGAAATTTA+TGG - chr8_1:66139548-66139567 Msa1208160:CDS 20.0%
!! ATAAAATTAATGTGTAGGTT+AGG - chr8_1:66139678-66139697 Msa1208160:five_prime_UTR 20.0%
!!! TCCTATTTGACTTATTATAT+GGG - chr8_1:66139982-66140001 Msa1208160:five_prime_UTR 20.0%
!! TAGTATATGAAAAAGAGAAA+AGG + chr8_1:66138451-66138470 None:intergenic 20.0%
!! TGAAAGTGAAAAAAACATAA+GGG + chr8_1:66138500-66138519 None:intergenic 20.0%
!! ATTGGTATAATTTAGAAGTT+TGG + chr8_1:66138561-66138580 None:intergenic 20.0%
!! AAGTATAAAGGAAATTCTAA+AGG + chr8_1:66139001-66139020 None:intergenic 20.0%
!!! TGATTGATGATGATTATTAT+TGG - chr8_1:66139047-66139066 Msa1208160:CDS 20.0%
!! TTTCAACATTGTAAAAATAG+TGG - chr8_1:66139409-66139428 Msa1208160:CDS 20.0%
!! ATAATTCAATGAAATTTGGT+AGG - chr8_1:66139436-66139455 Msa1208160:CDS 20.0%
!! ATTACATTGGATGAAATTTA+TGG - chr8_1:66139548-66139567 Msa1208160:CDS 20.0%
!! ATAAAATTAATGTGTAGGTT+AGG - chr8_1:66139678-66139697 Msa1208160:five_prime_UTR 20.0%
!!! TCCTATTTGACTTATTATAT+GGG - chr8_1:66139982-66140001 Msa1208160:five_prime_UTR 20.0%
! GTAGAAGAAATTAATGTGAA+GGG + chr8_1:66138272-66138291 None:intergenic 25.0%
! GTGAAAGTGAAAAAAACATA+AGG + chr8_1:66138501-66138520 None:intergenic 25.0%
!! ATAATTTAGAAGTTTGGAGT+TGG + chr8_1:66138555-66138574 None:intergenic 25.0%
!! TTATACCAATCTTACTCTTT+TGG - chr8_1:66138571-66138590 Msa1208160:CDS 25.0%
! AATAGAAGAATGAAAAGGAA+TGG + chr8_1:66138608-66138627 None:intergenic 25.0%
! AGTGAAATAGAAGAATGAAA+AGG + chr8_1:66138613-66138632 None:intergenic 25.0%
!! TTGGATTATTATGGTTTTTG+TGG - chr8_1:66139066-66139085 Msa1208160:CDS 25.0%
! GAAATTAAGAATTGCAAAGA+AGG - chr8_1:66139269-66139288 Msa1208160:CDS 25.0%
! TTAATCAAAAGTTTCCCATT+TGG + chr8_1:66139879-66139898 None:intergenic 25.0%
!! GTCCTATTTGACTTATTATA+TGG - chr8_1:66139981-66140000 Msa1208160:five_prime_UTR 25.0%
! TCCCATATAATAAGTCAAAT+AGG + chr8_1:66139986-66140005 None:intergenic 25.0%
! TTCAGCTCTATTTAATTCAA+TGG - chr8_1:66140028-66140047 Msa1208160:five_prime_UTR 25.0%
! GTAGAAGAAATTAATGTGAA+GGG + chr8_1:66138272-66138291 None:intergenic 25.0%
! GTGAAAGTGAAAAAAACATA+AGG + chr8_1:66138501-66138520 None:intergenic 25.0%
!! ATAATTTAGAAGTTTGGAGT+TGG + chr8_1:66138555-66138574 None:intergenic 25.0%
!! TTATACCAATCTTACTCTTT+TGG - chr8_1:66138571-66138590 Msa1208160:CDS 25.0%
! AATAGAAGAATGAAAAGGAA+TGG + chr8_1:66138608-66138627 None:intergenic 25.0%
! AGTGAAATAGAAGAATGAAA+AGG + chr8_1:66138613-66138632 None:intergenic 25.0%
!! TTGGATTATTATGGTTTTTG+TGG - chr8_1:66139066-66139085 Msa1208160:CDS 25.0%
! GAAATTAAGAATTGCAAAGA+AGG - chr8_1:66139269-66139288 Msa1208160:CDS 25.0%
! TTAATCAAAAGTTTCCCATT+TGG + chr8_1:66139879-66139898 None:intergenic 25.0%
!! GTCCTATTTGACTTATTATA+TGG - chr8_1:66139981-66140000 Msa1208160:five_prime_UTR 25.0%
! TCCCATATAATAAGTCAAAT+AGG + chr8_1:66139986-66140005 None:intergenic 25.0%
! TTCAGCTCTATTTAATTCAA+TGG - chr8_1:66140028-66140047 Msa1208160:five_prime_UTR 25.0%
GGTAGAAGAAATTAATGTGA+AGG + chr8_1:66138273-66138292 None:intergenic 30.0%
AGAGACTTTCTATCAAATCA+AGG - chr8_1:66138337-66138356 Msa1208160:three_prime_UTR 30.0%
AGAACGTAAAGAGCAAAAAT+GGG + chr8_1:66138389-66138408 None:intergenic 30.0%
AAGAACGTAAAGAGCAAAAA+TGG + chr8_1:66138390-66138409 None:intergenic 30.0%
GAAAAAGAGAAAAGGAGAAA+AGG + chr8_1:66138443-66138462 None:intergenic 30.0%
AAAGACCAAAAGAGTAAGAT+TGG + chr8_1:66138579-66138598 None:intergenic 30.0%
! ATAAGCTTTTGAACAAGTCA+AGG - chr8_1:66138640-66138659 Msa1208160:CDS 30.0%
AGAAATTGCTTTCCTTTGAA+TGG + chr8_1:66138694-66138713 None:intergenic 30.0%
TTTGCTTGATAGAGCTAAAA+GGG + chr8_1:66138723-66138742 None:intergenic 30.0%
! TTTTGCTTGATAGAGCTAAA+AGG + chr8_1:66138724-66138743 None:intergenic 30.0%
! AACGATCAACATGTTTTCAA+GGG - chr8_1:66138776-66138795 Msa1208160:intron 30.0%
ATTTGGATTGACATGAACAT+TGG + chr8_1:66138817-66138836 None:intergenic 30.0%
ATCAAAGTCAAAGTGAAGTA+TGG - chr8_1:66138918-66138937 Msa1208160:intron 30.0%
! ACTGATATGAATTTGGTGAT+GGG + chr8_1:66138949-66138968 None:intergenic 30.0%
! AACTGATATGAATTTGGTGA+TGG + chr8_1:66138950-66138969 None:intergenic 30.0%
CATGAGAACTGATATGAATT+TGG + chr8_1:66138956-66138975 None:intergenic 30.0%
! TATTATGGTTTTTGTGGTGT+AGG - chr8_1:66139072-66139091 Msa1208160:CDS 30.0%
! ATTATGGTTTTTGTGGTGTA+GGG - chr8_1:66139073-66139092 Msa1208160:CDS 30.0%
AAAATGTTGACAGAATCAAC+AGG - chr8_1:66139105-66139124 Msa1208160:CDS 30.0%
AAGAATTGCAAAGAAGGAAA+AGG - chr8_1:66139275-66139294 Msa1208160:intron 30.0%
!! CTCTAAGGTTACTTCAATTA+AGG + chr8_1:66139310-66139329 None:intergenic 30.0%
CTTAATTGAAGTAACCTTAG+AGG - chr8_1:66139308-66139327 Msa1208160:intron 30.0%
! CACATTATTGTGTACCTTTT+TGG + chr8_1:66139346-66139365 None:intergenic 30.0%
!! GATGAGAGTATTGATTACAT+TGG - chr8_1:66139535-66139554 Msa1208160:CDS 30.0%
ATTGGATGAAATTTATGGTG+AGG - chr8_1:66139553-66139572 Msa1208160:CDS 30.0%
TTGGATGAAATTTATGGTGA+GGG - chr8_1:66139554-66139573 Msa1208160:CDS 30.0%
CAGTTATGAAAACAAAGAGT+TGG + chr8_1:66139612-66139631 None:intergenic 30.0%
!!! CAACTCTTTGTTTTCATAAC+TGG - chr8_1:66139610-66139629 Msa1208160:CDS 30.0%
TAACATAACAAAGGAGAGTA+AGG - chr8_1:66139766-66139785 Msa1208160:five_prime_UTR 30.0%
AGTTGTAGTAACAACCAAAT+GGG - chr8_1:66139862-66139881 Msa1208160:five_prime_UTR 30.0%
AAGATTGCATTTAGTTGCTT+TGG - chr8_1:66139897-66139916 Msa1208160:five_prime_UTR 30.0%
GGTAGAAGAAATTAATGTGA+AGG + chr8_1:66138273-66138292 None:intergenic 30.0%
AGAGACTTTCTATCAAATCA+AGG - chr8_1:66138337-66138356 Msa1208160:three_prime_UTR 30.0%
AGAACGTAAAGAGCAAAAAT+GGG + chr8_1:66138389-66138408 None:intergenic 30.0%
AAGAACGTAAAGAGCAAAAA+TGG + chr8_1:66138390-66138409 None:intergenic 30.0%
GAAAAAGAGAAAAGGAGAAA+AGG + chr8_1:66138443-66138462 None:intergenic 30.0%
AAAGACCAAAAGAGTAAGAT+TGG + chr8_1:66138579-66138598 None:intergenic 30.0%
! ATAAGCTTTTGAACAAGTCA+AGG - chr8_1:66138640-66138659 Msa1208160:CDS 30.0%
AGAAATTGCTTTCCTTTGAA+TGG + chr8_1:66138694-66138713 None:intergenic 30.0%
TTTGCTTGATAGAGCTAAAA+GGG + chr8_1:66138723-66138742 None:intergenic 30.0%
! TTTTGCTTGATAGAGCTAAA+AGG + chr8_1:66138724-66138743 None:intergenic 30.0%
! AACGATCAACATGTTTTCAA+GGG - chr8_1:66138776-66138795 Msa1208160:intron 30.0%
ATTTGGATTGACATGAACAT+TGG + chr8_1:66138817-66138836 None:intergenic 30.0%
ATCAAAGTCAAAGTGAAGTA+TGG - chr8_1:66138918-66138937 Msa1208160:intron 30.0%
! ACTGATATGAATTTGGTGAT+GGG + chr8_1:66138949-66138968 None:intergenic 30.0%
! AACTGATATGAATTTGGTGA+TGG + chr8_1:66138950-66138969 None:intergenic 30.0%
CATGAGAACTGATATGAATT+TGG + chr8_1:66138956-66138975 None:intergenic 30.0%
! TATTATGGTTTTTGTGGTGT+AGG - chr8_1:66139072-66139091 Msa1208160:CDS 30.0%
! ATTATGGTTTTTGTGGTGTA+GGG - chr8_1:66139073-66139092 Msa1208160:CDS 30.0%
AAAATGTTGACAGAATCAAC+AGG - chr8_1:66139105-66139124 Msa1208160:CDS 30.0%
AAGAATTGCAAAGAAGGAAA+AGG - chr8_1:66139275-66139294 Msa1208160:intron 30.0%
!! CTCTAAGGTTACTTCAATTA+AGG + chr8_1:66139310-66139329 None:intergenic 30.0%
CTTAATTGAAGTAACCTTAG+AGG - chr8_1:66139308-66139327 Msa1208160:intron 30.0%
! CACATTATTGTGTACCTTTT+TGG + chr8_1:66139346-66139365 None:intergenic 30.0%
!! GATGAGAGTATTGATTACAT+TGG - chr8_1:66139535-66139554 Msa1208160:CDS 30.0%
ATTGGATGAAATTTATGGTG+AGG - chr8_1:66139553-66139572 Msa1208160:CDS 30.0%
TTGGATGAAATTTATGGTGA+GGG - chr8_1:66139554-66139573 Msa1208160:CDS 30.0%
CAGTTATGAAAACAAAGAGT+TGG + chr8_1:66139612-66139631 None:intergenic 30.0%
!!! CAACTCTTTGTTTTCATAAC+TGG - chr8_1:66139610-66139629 Msa1208160:CDS 30.0%
TAACATAACAAAGGAGAGTA+AGG - chr8_1:66139766-66139785 Msa1208160:five_prime_UTR 30.0%
AGTTGTAGTAACAACCAAAT+GGG - chr8_1:66139862-66139881 Msa1208160:five_prime_UTR 30.0%
AAGATTGCATTTAGTTGCTT+TGG - chr8_1:66139897-66139916 Msa1208160:five_prime_UTR 30.0%
AGAGAAAAGGAGAAAAGGAA+TGG + chr8_1:66138438-66138457 None:intergenic 35.0%
! ATTTAGAAGTTTGGAGTTGG+TGG + chr8_1:66138552-66138571 None:intergenic 35.0%
AATTGCTTTCCTTTGAATGG+AGG + chr8_1:66138691-66138710 None:intergenic 35.0%
AAAACTTGCAATGCAGTCAA+AGG - chr8_1:66138740-66138759 Msa1208160:intron 35.0%
! CAACGATCAACATGTTTTCA+AGG - chr8_1:66138775-66138794 Msa1208160:intron 35.0%
TCAATCCAAATGTAGCTGAA+TGG - chr8_1:66138826-66138845 Msa1208160:CDS 35.0%
CAATCCAAATGTAGCTGAAT+GGG - chr8_1:66138827-66138846 Msa1208160:CDS 35.0%
AATTCCCATTCAGCTACATT+TGG + chr8_1:66138834-66138853 None:intergenic 35.0%
! CTTCACTTTGACTTTGATGA+TGG + chr8_1:66138916-66138935 None:intergenic 35.0%
! ATCAGTTCTCATGCAAGTTT+TGG - chr8_1:66138963-66138982 Msa1208160:intron 35.0%
! TTATGGTTTTTGTGGTGTAG+GGG - chr8_1:66139074-66139093 Msa1208160:CDS 35.0%
GATATTGAGAGAGTCAAAGA+TGG - chr8_1:66139192-66139211 Msa1208160:CDS 35.0%
GAGTAGAGAAAGAAGGATAT+TGG - chr8_1:66139245-66139264 Msa1208160:CDS 35.0%
AATTTGGTAGGTTTCAGCTT+TGG - chr8_1:66139448-66139467 Msa1208160:CDS 35.0%
! TTGGAGGGTAATGTTTCTAA+AGG - chr8_1:66139467-66139486 Msa1208160:CDS 35.0%
! AGGTGAAGTTATTTCAGAGT+TGG - chr8_1:66139487-66139506 Msa1208160:CDS 35.0%
GAAATTGCAGAGAAAAGAAC+AGG - chr8_1:66139583-66139602 Msa1208160:CDS 35.0%
! ACTGACTCAGAATGTTTCAA+AGG + chr8_1:66139845-66139864 None:intergenic 35.0%
CAGTTGTAGTAACAACCAAA+TGG - chr8_1:66139861-66139880 Msa1208160:five_prime_UTR 35.0%
CCACTCACACATATATAACA+CGG + chr8_1:66140107-66140126 None:intergenic 35.0%
AGAGAAAAGGAGAAAAGGAA+TGG + chr8_1:66138438-66138457 None:intergenic 35.0%
! ATTTAGAAGTTTGGAGTTGG+TGG + chr8_1:66138552-66138571 None:intergenic 35.0%
AATTGCTTTCCTTTGAATGG+AGG + chr8_1:66138691-66138710 None:intergenic 35.0%
AAAACTTGCAATGCAGTCAA+AGG - chr8_1:66138740-66138759 Msa1208160:intron 35.0%
! CAACGATCAACATGTTTTCA+AGG - chr8_1:66138775-66138794 Msa1208160:intron 35.0%
TCAATCCAAATGTAGCTGAA+TGG - chr8_1:66138826-66138845 Msa1208160:CDS 35.0%
CAATCCAAATGTAGCTGAAT+GGG - chr8_1:66138827-66138846 Msa1208160:CDS 35.0%
AATTCCCATTCAGCTACATT+TGG + chr8_1:66138834-66138853 None:intergenic 35.0%
! CTTCACTTTGACTTTGATGA+TGG + chr8_1:66138916-66138935 None:intergenic 35.0%
! ATCAGTTCTCATGCAAGTTT+TGG - chr8_1:66138963-66138982 Msa1208160:intron 35.0%
! TTATGGTTTTTGTGGTGTAG+GGG - chr8_1:66139074-66139093 Msa1208160:CDS 35.0%
GATATTGAGAGAGTCAAAGA+TGG - chr8_1:66139192-66139211 Msa1208160:CDS 35.0%
GAGTAGAGAAAGAAGGATAT+TGG - chr8_1:66139245-66139264 Msa1208160:CDS 35.0%
AATTTGGTAGGTTTCAGCTT+TGG - chr8_1:66139448-66139467 Msa1208160:CDS 35.0%
! TTGGAGGGTAATGTTTCTAA+AGG - chr8_1:66139467-66139486 Msa1208160:CDS 35.0%
! AGGTGAAGTTATTTCAGAGT+TGG - chr8_1:66139487-66139506 Msa1208160:CDS 35.0%
GAAATTGCAGAGAAAAGAAC+AGG - chr8_1:66139583-66139602 Msa1208160:CDS 35.0%
! ACTGACTCAGAATGTTTCAA+AGG + chr8_1:66139845-66139864 None:intergenic 35.0%
CAGTTGTAGTAACAACCAAA+TGG - chr8_1:66139861-66139880 Msa1208160:five_prime_UTR 35.0%
CCACTCACACATATATAACA+CGG + chr8_1:66140107-66140126 None:intergenic 35.0%
GTTGTTCTTTCTTCTTCCCT+AGG - chr8_1:66138662-66138681 Msa1208160:CDS 40.0%
CTTTGAATGGAGGAAACCTA+GGG + chr8_1:66138681-66138700 None:intergenic 40.0%
! TTTTGTACTAGCATTCCACC+TGG + chr8_1:66138861-66138880 None:intergenic 40.0%
ACATCGAGAGTAGAGAAAGA+AGG - chr8_1:66139238-66139257 Msa1208160:CDS 40.0%
GGTTGACAAACTTGCCAAAA+AGG - chr8_1:66139329-66139348 Msa1208160:intron 40.0%
CCGTGTTATATATGTGTGAG+TGG - chr8_1:66140104-66140123 Msa1208160:five_prime_UTR 40.0%
AGGGAAACACCTCATAATTG+TGG + chr8_1:66138253-66138272 None:intergenic 40.0%
GTTGTTCTTTCTTCTTCCCT+AGG - chr8_1:66138662-66138681 Msa1208160:CDS 40.0%
CTTTGAATGGAGGAAACCTA+GGG + chr8_1:66138681-66138700 None:intergenic 40.0%
! TTTTGTACTAGCATTCCACC+TGG + chr8_1:66138861-66138880 None:intergenic 40.0%
ACATCGAGAGTAGAGAAAGA+AGG - chr8_1:66139238-66139257 Msa1208160:CDS 40.0%
GGTTGACAAACTTGCCAAAA+AGG - chr8_1:66139329-66139348 Msa1208160:intron 40.0%
CCGTGTTATATATGTGTGAG+TGG - chr8_1:66140104-66140123 Msa1208160:five_prime_UTR 40.0%
GCAAAAATGGGAGTGAGTGA+GGG + chr8_1:66138377-66138396 None:intergenic 45.0%
AGCAAAAATGGGAGTGAGTG+AGG + chr8_1:66138378-66138397 None:intergenic 45.0%
TTTCACTTTCACCGACAGCT+AGG - chr8_1:66138509-66138528 Msa1208160:CDS 45.0%
GGTGAAAACAACCTAGCTGT+CGG + chr8_1:66138523-66138542 None:intergenic 45.0%
!!! GTTTGGAGTTGGTGGTGTTT+TGG + chr8_1:66138544-66138563 None:intergenic 45.0%
CCTTTGAATGGAGGAAACCT+AGG + chr8_1:66138682-66138701 None:intergenic 45.0%
CCTAGGTTTCCTCCATTCAA+AGG - chr8_1:66138679-66138698 Msa1208160:intron 45.0%
GCTGAATGGGAATTAAGACC+AGG - chr8_1:66138840-66138859 Msa1208160:CDS 45.0%
GAATGGGAATTAAGACCAGG+TGG - chr8_1:66138843-66138862 Msa1208160:CDS 45.0%
GGCAAGTTTGTCAACCTCTA+AGG + chr8_1:66139325-66139344 None:intergenic 45.0%
! TTGGTAGGTTTCAGCTTTGG+AGG - chr8_1:66139451-66139470 Msa1208160:CDS 45.0%
!! TGGTAGGTTTCAGCTTTGGA+GGG - chr8_1:66139452-66139471 Msa1208160:CDS 45.0%
GCAAAAATGGGAGTGAGTGA+GGG + chr8_1:66138377-66138396 None:intergenic 45.0%
AGCAAAAATGGGAGTGAGTG+AGG + chr8_1:66138378-66138397 None:intergenic 45.0%
TTTCACTTTCACCGACAGCT+AGG - chr8_1:66138509-66138528 Msa1208160:CDS 45.0%
GGTGAAAACAACCTAGCTGT+CGG + chr8_1:66138523-66138542 None:intergenic 45.0%
!!! GTTTGGAGTTGGTGGTGTTT+TGG + chr8_1:66138544-66138563 None:intergenic 45.0%
CCTTTGAATGGAGGAAACCT+AGG + chr8_1:66138682-66138701 None:intergenic 45.0%
CCTAGGTTTCCTCCATTCAA+AGG - chr8_1:66138679-66138698 Msa1208160:intron 45.0%
GCTGAATGGGAATTAAGACC+AGG - chr8_1:66138840-66138859 Msa1208160:CDS 45.0%
GAATGGGAATTAAGACCAGG+TGG - chr8_1:66138843-66138862 Msa1208160:CDS 45.0%
GGCAAGTTTGTCAACCTCTA+AGG + chr8_1:66139325-66139344 None:intergenic 45.0%
! TTGGTAGGTTTCAGCTTTGG+AGG - chr8_1:66139451-66139470 Msa1208160:CDS 45.0%
!! TGGTAGGTTTCAGCTTTGGA+GGG - chr8_1:66139452-66139471 Msa1208160:CDS 45.0%
AAAATGGGAGTGAGTGAGGG+AGG + chr8_1:66138374-66138393 None:intergenic 50.0%
AAAATGGGAGTGAGTGAGGG+AGG + chr8_1:66138374-66138393 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 66138251 66140136 66138251 ID=Msa1208160;Name=Msa1208160
chr8_1 mRNA 66138251 66140136 66138251 ID=Msa1208160-mRNA-1;Parent=Msa1208160;Name=Msa1208160-mRNA-1;_AED=0.07;_eAED=0.07;_QI=499|1|1|1|1|1|4|238|280
chr8_1 exon 66138251 66138692 66138251 ID=Msa1208160-mRNA-1:exon:21761;Parent=Msa1208160-mRNA-1
chr8_1 exon 66138783 66138929 66138783 ID=Msa1208160-mRNA-1:exon:21760;Parent=Msa1208160-mRNA-1
chr8_1 exon 66139037 66139293 66139037 ID=Msa1208160-mRNA-1:exon:21759;Parent=Msa1208160-mRNA-1
chr8_1 exon 66139403 66140136 66139403 ID=Msa1208160-mRNA-1:exon:21758;Parent=Msa1208160-mRNA-1
chr8_1 five_prime_UTR 66139638 66140136 66139638 ID=Msa1208160-mRNA-1:five_prime_utr;Parent=Msa1208160-mRNA-1
chr8_1 CDS 66139403 66139637 66139403 ID=Msa1208160-mRNA-1:cds;Parent=Msa1208160-mRNA-1
chr8_1 CDS 66139037 66139293 66139037 ID=Msa1208160-mRNA-1:cds;Parent=Msa1208160-mRNA-1
chr8_1 CDS 66138783 66138929 66138783 ID=Msa1208160-mRNA-1:cds;Parent=Msa1208160-mRNA-1
chr8_1 CDS 66138489 66138692 66138489 ID=Msa1208160-mRNA-1:cds;Parent=Msa1208160-mRNA-1
chr8_1 three_prime_UTR 66138251 66138488 66138251 ID=Msa1208160-mRNA-1:three_prime_utr;Parent=Msa1208160-mRNA-1
Gene Sequence

>Msa1208160

ATGCAGTCAAAGGTTACAAAGAAGTCAACGATCAACATGTTTTCAAGGGACAAAAAAAGTGACACCAATGTTCATGTCAATCCAAATGTAGCTGAATGGGAATTAAGACCAGGTGGAATGCTAGTACAAAAACGTAATTCAGATGTGAATGATAATTTTTCATCCATCATCAAAGTCAAAGTGAAGTATGGCTCATCCCATCACCAAATTCATATCAGTTCTCATGCAAGTTTTGGGGAATTGAAGAAAATGTTGACAGAATCAACAGGATTGCATGTTCAAGATCAGAAGTTGATTTTCAAGAAAAAAGAGAGAGACTCAAAGTCATATCTTGATATTGAGAGAGTCAAAGATGGATCAAAGTTGATTTTAATTGAAGACATCGAGAGTAGAGAAAGAAGGATATTGGAGAAATTAAGAATTGCAAAGAAGGAAAAGGCTTCAAAATCCTTAATTGAAGTAACCTTAGAGGTTGACAAACTTGCCAAAAAGGTTTCAGCTTTGGAGGGTAATGTTTCTAAAGGTGAAGTTATTTCAGAGTTGGATGTAGAGAGTTTAACAGAAAATTTGATGAGAGTATTGATTACATTGGATGAAATTTATGGTGAGGGTGAACTGAAATTGCAGAGAAAAGAACAGGTTAGGAGAGTTCAGAAGCACATTGAGACTCTTGATATGTTAAAGATGTCAAAGTCAATTGAAAATAACAATAACATAACAAAGGAGAGTAAGGTTGATTGTGATGTTCAAAAGCAGCATTTGCAAGAGAAGCAACAAGAACAACAACCTTTGAAACATTCTGAGTCAGTTGTAGTAACAACCAAATGGGAAACTTTTGATTAA

Protein sequence

>Msa1208160

MQSKVTKKSTINMFSRDKKSDTNVHVNPNVAEWELRPGGMLVQKRNSDVNDNFSSIIKVKVKYGSSHHQIHISSHASFGELKKMLTESTGLHVQDQKLIFKKKERDSKSYLDIERVKDGSKLILIEDIESRERRILEKLRIAKKEKASKSLIEVTLEVDKLAKKVSALEGNVSKGEVISELDVESLTENLMRVLITLDEIYGEGELKLQRKEQVRRVQKHIETLDMLKMSKSIENNNNITKESKVDCDVQKQHLQEKQQEQQPLKHSESVVVTTKWETFD*