Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709280 | XP_003630534.1 | 94.127 | 613 | 13 | 1 | 1 | 590 | 1 | 613 | 0.0 | 1179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709280 | sp|Q9FLL1|NOB1_ARATH | 53.025 | 628 | 225 | 12 | 1 | 587 | 1 | 599 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709280 | G7LI13 | 94.127 | 613 | 13 | 1 | 1 | 590 | 1 | 613 | 0.0 | 1179 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0617540 | Msa0709280 | 0.835903 | 1.279858e-56 | -8.615850e-47 |
| Msa0656410 | Msa0709280 | 0.826432 | 2.722075e-54 | -8.615850e-47 |
| Msa0709280 | Msa0712610 | 0.803547 | 3.309024e-49 | -8.615850e-47 |
| Msa0709280 | Msa0729200 | 0.817736 | 2.824719e-52 | -8.615850e-47 |
| Msa0709280 | Msa0769590 | 0.817488 | 3.213026e-52 | -8.615850e-47 |
| Msa0709280 | Msa0806880 | 0.811562 | 6.578716e-51 | -8.615850e-47 |
| Msa0709280 | Msa0888810 | 0.802809 | 4.703523e-49 | -8.615850e-47 |
| Msa0709280 | Msa1356790 | 0.803902 | 2.792372e-49 | -8.615850e-47 |
| Msa0709280 | Msa1413500 | 0.809786 | 1.592525e-50 | -8.615850e-47 |
| Msa0458370 | Msa0709280 | -0.817138 | 3.852199e-52 | -8.615850e-47 |
| Msa0546030 | Msa0709280 | 0.825516 | 4.492591e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709280 | MtrunA17_Chr8g0386641 | 94.127 | 613 | 13 | 1 | 1 | 590 | 1 | 613 | 0.0 | 1179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709280 | AT5G41190.1 | 53.025 | 628 | 225 | 12 | 1 | 587 | 1 | 599 | 0.0 | 627 |
Find 167 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCACTCTCCGGAATTTC+TGG | 0.117528 | 5_1:+411480 | None:intergenic |
| GTGCCACCATTTCCGCATTT+TGG | 0.164762 | 5_1:+410436 | None:intergenic |
| TTATAAAAGAACATGATTTA+AGG | 0.189296 | 5_1:-409467 | Msa0709280:three_prime_UTR |
| CCAAATGGGTTTGCGCTTGC+TGG | 0.207884 | 5_1:-410791 | Msa0709280:CDS |
| TGAAGATAGCAGTGCAAATT+TGG | 0.219331 | 5_1:-411004 | Msa0709280:CDS |
| GCTTCCCACTCTTCCAAATT+AGG | 0.241820 | 5_1:+411636 | None:intergenic |
| GTCAAGTTTGCTAGGGTTAC+TGG | 0.249525 | 5_1:-411828 | Msa0709280:CDS |
| ACATGATTTACATCATGATT+TGG | 0.256714 | 5_1:-409403 | Msa0709280:three_prime_UTR |
| ATCTTGTTGATCTTGATTAC+TGG | 0.256732 | 5_1:+411254 | None:intergenic |
| GGGTTTGAATGTGCCTAATT+TGG | 0.276019 | 5_1:-411649 | Msa0709280:CDS |
| CATCTGTATAAGATTTAGTT+TGG | 0.283524 | 5_1:-409438 | Msa0709280:three_prime_UTR |
| GATTTAGTTTGGGTGATATA+TGG | 0.283679 | 5_1:-409427 | Msa0709280:three_prime_UTR |
| TTCACTGTTACTGCTGAAAT+TGG | 0.291257 | 5_1:-410472 | Msa0709280:CDS |
| TTTGCAAACCCAACAGGTTT+TGG | 0.297325 | 5_1:-412677 | Msa0709280:CDS |
| CTACTCCAGCACGATGCTTT+TGG | 0.301824 | 5_1:+412745 | None:intergenic |
| CATTGCTCTAACTTATACTT+TGG | 0.301873 | 5_1:-411769 | Msa0709280:CDS |
| GCTGTCACTGTTAATGAAAA+TGG | 0.309540 | 5_1:-410400 | Msa0709280:CDS |
| CTTCAGCCACCACAATTCTA+AGG | 0.325731 | 5_1:-409659 | Msa0709280:CDS |
| GTAGGACGACGACTTCTATA+TGG | 0.345158 | 5_1:-409692 | Msa0709280:intron |
| CATGATTTACATCATGATTT+GGG | 0.347176 | 5_1:-409402 | Msa0709280:intron |
| CGTGAGTAGTGATTGTCATT+TGG | 0.375242 | 5_1:+409577 | None:intergenic |
| TTCTGTCCAAAATGCGGAAA+TGG | 0.376057 | 5_1:-410442 | Msa0709280:CDS |
| AAACACACAAACAACCTTGT+TGG | 0.376229 | 5_1:+409830 | None:intergenic |
| CATCAGCAGCTTCACTTGAC+TGG | 0.379113 | 5_1:+410920 | None:intergenic |
| TGAAACTCTTCCAGAAATTC+CGG | 0.384527 | 5_1:-411490 | Msa0709280:CDS |
| TAATCAAGATCAACAAGATA+TGG | 0.384551 | 5_1:-411250 | Msa0709280:CDS |
| TCTACTGTGGCCTGTATAAC+TGG | 0.386129 | 5_1:-410841 | Msa0709280:CDS |
| GCAGAATGTTCTTCTCCAAA+TGG | 0.387712 | 5_1:-410806 | Msa0709280:CDS |
| CCAGCAAGCGCAAACCCATT+TGG | 0.393658 | 5_1:+410791 | None:intergenic |
| GAAAGCTTATGACGAGAAAC+AGG | 0.404878 | 5_1:+412520 | None:intergenic |
| TGCAAAGTCACCAGTTATAC+AGG | 0.407508 | 5_1:+410831 | None:intergenic |
| CAGAATGTTCTTCTCCAAAT+GGG | 0.409413 | 5_1:-410805 | Msa0709280:CDS |
| GGTTTGCGCTTGCTGGCACC+TGG | 0.419244 | 5_1:-410784 | Msa0709280:CDS |
| TGTTTCTGTTCCCGAAGTTA+TGG | 0.420287 | 5_1:-412557 | Msa0709280:CDS |
| ATGCTCTCCTGACGGGAGGC+TGG | 0.424797 | 5_1:+409626 | None:intergenic |
| TGCTCTAACTTATACTTTGG+AGG | 0.431975 | 5_1:-411766 | Msa0709280:CDS |
| TGTTAGTTGTCAAGTTTGCT+AGG | 0.431988 | 5_1:-411836 | Msa0709280:intron |
| TTCAAGAATCCTTCCTCTGC+AGG | 0.435157 | 5_1:-411577 | Msa0709280:CDS |
| CATCCCGGCATGTCCTTCTC+AGG | 0.436359 | 5_1:+411672 | None:intergenic |
| TTTGGAAGAGTGGGAAGCAT+TGG | 0.442947 | 5_1:-411631 | Msa0709280:CDS |
| ATCTGTATAAGATTTAGTTT+GGG | 0.444292 | 5_1:-409437 | Msa0709280:three_prime_UTR |
| TTCACGGAACAAAACATCTC+AGG | 0.444574 | 5_1:-411737 | Msa0709280:CDS |
| TCCCTTCCACCTTGAGGTAA+AGG | 0.445988 | 5_1:+409930 | None:intergenic |
| CTCCTTTCCAGCCTCCCGTC+AGG | 0.448309 | 5_1:-409633 | Msa0709280:CDS |
| CATCACTTTGGTGCACATCC+AGG | 0.451839 | 5_1:+411181 | None:intergenic |
| TTCTCATTGCCTTTACCTCA+AGG | 0.454002 | 5_1:-409939 | Msa0709280:CDS |
| GAAGCTGGTGAAAAGCTTCA+TGG | 0.455837 | 5_1:-412595 | Msa0709280:CDS |
| AGCATCTTCCAAAACCTGTT+GGG | 0.455962 | 5_1:+412669 | None:intergenic |
| GTAACAATTACCTGTGCAAC+TGG | 0.456239 | 5_1:+410746 | None:intergenic |
| ACCTGTTGGGTTTGCAAAAG+TGG | 0.459872 | 5_1:+412682 | None:intergenic |
| TGAGAAGGACATGCCGGGAT+GGG | 0.464992 | 5_1:-411670 | Msa0709280:CDS |
| TGCATGTATCATATCATCCT+TGG | 0.465343 | 5_1:+411131 | None:intergenic |
| TTTGAGGCAGTTGATCTTCA+CGG | 0.467872 | 5_1:+409883 | None:intergenic |
| TATTGAAAATGTTGTTTCCA+AGG | 0.469382 | 5_1:-411148 | Msa0709280:CDS |
| CGAATCTCCTCCATAACTTC+GGG | 0.471182 | 5_1:+412547 | None:intergenic |
| TTTACTGTTTGCACAGGAGG+TGG | 0.471720 | 5_1:+411708 | None:intergenic |
| CAGAGGAAGGATTCTTGAAT+CGG | 0.479778 | 5_1:+411581 | None:intergenic |
| CTGGAGTAGCGTAGTGAAGA+AGG | 0.480883 | 5_1:-412731 | Msa0709280:CDS |
| CTCCTGACGGGAGGCTGGAA+AGG | 0.481280 | 5_1:+409631 | None:intergenic |
| ACTTTGGAGGCTCAGATTCA+CGG | 0.490488 | 5_1:-411753 | Msa0709280:CDS |
| TTCAGCAGTAACAGTGAAGC+AGG | 0.491505 | 5_1:+410477 | None:intergenic |
| GATATGGAAGAAAACATTGA+TGG | 0.491605 | 5_1:-411234 | Msa0709280:CDS |
| ATGATGCCAGTGAGCAAAGT+TGG | 0.492731 | 5_1:-410885 | Msa0709280:CDS |
| AAATTTGCACTGCTATCTTC+AGG | 0.493660 | 5_1:+411006 | None:intergenic |
| GTTAGTTGTCAAGTTTGCTA+GGG | 0.494452 | 5_1:-411835 | Msa0709280:intron |
| ACCAGCTTCAATAACAGCAT+TGG | 0.494776 | 5_1:+412609 | None:intergenic |
| GATAAACATTGAAGGGAAGA+TGG | 0.494792 | 5_1:-411409 | Msa0709280:CDS |
| ATCGGAATTTGCATTGTCCT+CGG | 0.495690 | 5_1:+411599 | None:intergenic |
| GTGGATATTCAAAACTTGGC+TGG | 0.497458 | 5_1:-409542 | Msa0709280:three_prime_UTR |
| CTATCTTCAGGAGACAGACT+TGG | 0.499148 | 5_1:+411018 | None:intergenic |
| CACAGATACACCAGTTGCAC+AGG | 0.501209 | 5_1:-410756 | Msa0709280:intron |
| TAATGTAACTCGAGGTCGAC+GGG | 0.502431 | 5_1:+410363 | None:intergenic |
| TGATCAATCTGAGGTTGGTT+CGG | 0.503635 | 5_1:-411526 | Msa0709280:CDS |
| CTGAGAAGGACATGCCGGGA+TGG | 0.508366 | 5_1:-411671 | Msa0709280:CDS |
| GAGCATCTTCCAAAACCTGT+TGG | 0.508374 | 5_1:+412668 | None:intergenic |
| TATGCTTCTCATCATCACTT+TGG | 0.511242 | 5_1:+411169 | None:intergenic |
| ACATTTACTGTTTGCACAGG+AGG | 0.511908 | 5_1:+411705 | None:intergenic |
| AGAGTGGGAAGCATTGGAAC+AGG | 0.513153 | 5_1:-411625 | Msa0709280:CDS |
| TGCCTTTACCTCAAGGTGGA+AGG | 0.513861 | 5_1:-409932 | Msa0709280:CDS |
| CTGTTACTGCTGAAATTGGA+AGG | 0.516329 | 5_1:-410468 | Msa0709280:CDS |
| AAAAGTGGTGGTGGTTGTTG+AGG | 0.517124 | 5_1:+412697 | None:intergenic |
| ACGAATCTCCTCCATAACTT+CGG | 0.517914 | 5_1:+412546 | None:intergenic |
| GCCAATGCTGTTATTGAAGC+TGG | 0.519074 | 5_1:-412610 | Msa0709280:CDS |
| GTGAAGATCAACTGCCTCAA+AGG | 0.522194 | 5_1:-409881 | Msa0709280:CDS |
| AGTAGTGGATATTCAAAACT+TGG | 0.522912 | 5_1:-409546 | Msa0709280:exon |
| TGGGTTTGCAAAAGTGGTGG+TGG | 0.530280 | 5_1:+412688 | None:intergenic |
| GTTGCTAATGCTCTCCTGAC+GGG | 0.532845 | 5_1:+409619 | None:intergenic |
| CTGCTTCAGAGTTGCAGAGA+GGG | 0.534240 | 5_1:+411089 | None:intergenic |
| AAAGAACATGATTTAAGGCA+TGG | 0.535216 | 5_1:-409462 | Msa0709280:three_prime_UTR |
| GAGAAGGACATGCCGGGATG+GGG | 0.535504 | 5_1:-411669 | Msa0709280:CDS |
| TTCACATTTACTGTTTGCAC+AGG | 0.537571 | 5_1:+411702 | None:intergenic |
| ACTCACGCCCGCGTAAGTAG+TGG | 0.542669 | 5_1:-409561 | Msa0709280:exon |
| GGTGGTGGTTGTTGAGGTGG+CGG | 0.542821 | 5_1:+412703 | None:intergenic |
| TGGTGTATCTGTGATCCTCC+AGG | 0.544263 | 5_1:+410766 | None:intergenic |
| ACTTATGAGTAAATAGCAGA+TGG | 0.544269 | 5_1:+409209 | None:intergenic |
| AAGCATCCAACTTTGCTCAC+TGG | 0.546095 | 5_1:+410879 | None:intergenic |
| TGAAGATCAACTGCCTCAAA+GGG | 0.546216 | 5_1:-409880 | Msa0709280:CDS |
| GCCTTTACCTCAAGGTGGAA+GGG | 0.547026 | 5_1:-409931 | Msa0709280:CDS |
| TTAGGATGAAGTACCCTTTG+AGG | 0.550596 | 5_1:+409867 | None:intergenic |
| TGTGAAGAGGTTGCCTGAGA+AGG | 0.551471 | 5_1:-411685 | Msa0709280:CDS |
| AGATGATAAGACTTCAAACC+TGG | 0.551742 | 5_1:-411199 | Msa0709280:CDS |
| AAGAACCAAAAGCATCGTGC+TGG | 0.559027 | 5_1:-412750 | Msa0709280:CDS |
| GTTGCCTGAGAAGGACATGC+CGG | 0.561370 | 5_1:-411676 | Msa0709280:CDS |
| CAAGATGATCAATCTGAGGT+TGG | 0.562902 | 5_1:-411531 | Msa0709280:CDS |
| AACTCAAGTCCTGCAGAGGA+AGG | 0.563302 | 5_1:+411568 | None:intergenic |
| TAACAGCATTAAAACTCATG+AGG | 0.565655 | 5_1:+409183 | None:intergenic |
| GGCACATTCAAACCCCATCC+CGG | 0.567117 | 5_1:+411657 | None:intergenic |
| AGAGCATTAGCAACTTTCAG+TGG | 0.569217 | 5_1:-409610 | Msa0709280:CDS |
| TTACTGTTTGCACAGGAGGT+GGG | 0.570348 | 5_1:+411709 | None:intergenic |
| AAGCAGATAACTCTGGAAGA+AGG | 0.573080 | 5_1:-411072 | Msa0709280:CDS |
| GAGCATTAGCAACTTTCAGT+GGG | 0.573278 | 5_1:-409609 | Msa0709280:CDS |
| CTGTCAGTCGTAGTACTCAC+AGG | 0.574410 | 5_1:-411323 | Msa0709280:CDS |
| AACAGCATTAAAACTCATGA+GGG | 0.575438 | 5_1:+409184 | None:intergenic |
| AGTGGTGGTGGTTGTTGAGG+TGG | 0.577070 | 5_1:+412700 | None:intergenic |
| TTGATGACAATGGAGGTGAT+TGG | 0.580996 | 5_1:-411353 | Msa0709280:CDS |
| TTGCCTGAGAAGGACATGCC+GGG | 0.581019 | 5_1:-411675 | Msa0709280:CDS |
| TCCTCAAGATGATCAATCTG+AGG | 0.581434 | 5_1:-411535 | Msa0709280:CDS |
| CCGCCACGTTCATCACTCTC+CGG | 0.581461 | 5_1:+411471 | None:intergenic |
| AACTCTGAAGCAGATAACTC+TGG | 0.585499 | 5_1:-411079 | Msa0709280:CDS |
| ATCTTTGTCTGAATCTACTG+TGG | 0.586024 | 5_1:-410854 | Msa0709280:CDS |
| AGTTGCTAATGCTCTCCTGA+CGG | 0.586879 | 5_1:+409618 | None:intergenic |
| TAATGAAAATGGATTAATGA+TGG | 0.587751 | 5_1:-410389 | Msa0709280:CDS |
| GAGTTACATTACGTGGCACA+AGG | 0.590124 | 5_1:-410351 | Msa0709280:CDS |
| TTCTGTTCCCGAAGTTATGG+AGG | 0.592948 | 5_1:-412554 | Msa0709280:CDS |
| TGAGTACTACGACTGACAGC+AGG | 0.594924 | 5_1:+411327 | None:intergenic |
| AAGGAGATCCCTTAGAATTG+TGG | 0.596504 | 5_1:+409650 | None:intergenic |
| TTGAATATCCACTACTTACG+CGG | 0.598952 | 5_1:+409553 | None:intergenic |
| TTGCGCTTGCTGGCACCTGG+AGG | 0.601247 | 5_1:-410781 | Msa0709280:CDS |
| CTTATGAGTAAATAGCAGAT+GGG | 0.601501 | 5_1:+409210 | None:intergenic |
| TTCAGCCACCACAATTCTAA+GGG | 0.601789 | 5_1:-409658 | Msa0709280:CDS |
| TGTCCAAAATGCGGAAATGG+TGG | 0.602304 | 5_1:-410439 | Msa0709280:CDS |
| GAAGATGCTCGTAACCGTCA+TGG | 0.602557 | 5_1:-412655 | Msa0709280:CDS |
| AAATGGTGGCACCTTGAGGA+AGG | 0.604511 | 5_1:-410425 | Msa0709280:CDS |
| CGACCTCGAGTTACATTACG+TGG | 0.607023 | 5_1:-410358 | Msa0709280:CDS |
| ATGTGCCTAATTTGGAAGAG+TGG | 0.608543 | 5_1:-411641 | Msa0709280:CDS |
| ACCTCAGATTGATCATCTTG+AGG | 0.608905 | 5_1:+411534 | None:intergenic |
| AACAAGGAAGAAAGCCAACA+AGG | 0.609876 | 5_1:-409844 | Msa0709280:intron |
| TGTGCCTAATTTGGAAGAGT+GGG | 0.621322 | 5_1:-411640 | Msa0709280:CDS |
| CAATGACATAGTAAATCACT+CGG | 0.621478 | 5_1:-410953 | Msa0709280:CDS |
| GCGGAAATGGTGGCACCTTG+AGG | 0.621994 | 5_1:-410429 | Msa0709280:CDS |
| CAAGGACAAGTTGATGACAA+TGG | 0.627479 | 5_1:-411363 | Msa0709280:CDS |
| ACTGCATCCCTTCCACCTTG+AGG | 0.628249 | 5_1:+409924 | None:intergenic |
| TTCAAACTCAAGTCCTGCAG+AGG | 0.629113 | 5_1:+411564 | None:intergenic |
| GAAGGGAAGATGGTTGCTGA+TGG | 0.630809 | 5_1:-411399 | Msa0709280:CDS |
| TCACGGAACAAAACATCTCA+GGG | 0.633868 | 5_1:-411736 | Msa0709280:CDS |
| TGAATATCCACTACTTACGC+GGG | 0.635815 | 5_1:+409554 | None:intergenic |
| GGACGACGACTTCTATATGG+TGG | 0.638637 | 5_1:-409689 | Msa0709280:CDS |
| GGGTACTTCATCCTAAAACA+AGG | 0.642784 | 5_1:-409860 | Msa0709280:CDS |
| GATGGAATTGATGCATCTCA+AGG | 0.646560 | 5_1:-411381 | Msa0709280:CDS |
| TGCAAACAGTAAATGTGAAG+AGG | 0.648385 | 5_1:-411698 | Msa0709280:CDS |
| GAGATCCCTTAGAATTGTGG+TGG | 0.651673 | 5_1:+409653 | None:intergenic |
| GCTAATGCTCTCCTGACGGG+AGG | 0.659205 | 5_1:+409622 | None:intergenic |
| AGTGACAGCTACCTTCCTCA+AGG | 0.664365 | 5_1:+410414 | None:intergenic |
| TGTTGGGTTTGCAAAAGTGG+TGG | 0.672608 | 5_1:+412685 | None:intergenic |
| GTAATGTAACTCGAGGTCGA+CGG | 0.674307 | 5_1:+410362 | None:intergenic |
| TCATTGCCTTTACCTCAAGG+TGG | 0.675530 | 5_1:-409936 | Msa0709280:CDS |
| GTGCCACGTAATGTAACTCG+AGG | 0.676345 | 5_1:+410355 | None:intergenic |
| ATACATGCAGAGAACAATGA+CGG | 0.679329 | 5_1:-411117 | Msa0709280:CDS |
| ATGAACGTGGCGGTTCAATG+AGG | 0.682906 | 5_1:-411461 | Msa0709280:CDS |
| GGACAAGTTGATGACAATGG+AGG | 0.685424 | 5_1:-411360 | Msa0709280:CDS |
| GAGTAGCGTAGTGAAGAAGG+AGG | 0.690050 | 5_1:-412728 | Msa0709280:CDS |
| AGCATTGGAACAGGAAACCG+AGG | 0.692406 | 5_1:-411616 | Msa0709280:CDS |
| TCTGCTTCAGAGTTGCAGAG+AGG | 0.697016 | 5_1:+411088 | None:intergenic |
| AGTTACATTACGTGGCACAA+GGG | 0.712686 | 5_1:-410350 | Msa0709280:intron |
| ATTCCGGAGAGTGATGAACG+TGG | 0.742400 | 5_1:-411474 | Msa0709280:CDS |
| CCGGAGAGTGATGAACGTGG+CGG | 0.753397 | 5_1:-411471 | Msa0709280:CDS |
| CAGCAACAGAGATACCATGA+CGG | 0.755141 | 5_1:+412641 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAGTTAAAAAACAAAAA+GGG | + | chr5_1:409461-409480 | None:intergenic | 10.0% |
| !! | TTAAAAGTTAAAAAACAAAA+AGG | + | chr5_1:409462-409481 | None:intergenic | 10.0% |
| !!! | ATATATATGAAAGTATATTT+TGG | - | chr5_1:409998-410017 | Msa0709280:intron | 10.0% |
| !!! | ATTTTGTTTTTTATTGCTAT+TGG | - | chr5_1:412392-412411 | Msa0709280:intron | 15.0% |
| !! | TTATAAAAGAACATGATTTA+AGG | - | chr5_1:412428-412447 | Msa0709280:intron | 15.0% |
| !!! | ATGTTTATCACTTTTTTCTT+AGG | + | chr5_1:410475-410494 | None:intergenic | 20.0% |
| !! | AAAAAAGTGATAAACATTGA+AGG | - | chr5_1:410478-410497 | Msa0709280:CDS | 20.0% |
| !! | AAAAAGTGATAAACATTGAA+GGG | - | chr5_1:410479-410498 | Msa0709280:CDS | 20.0% |
| !! | AAAATTTACTTCAAATAGCA+AGG | + | chr5_1:411212-411231 | None:intergenic | 20.0% |
| !!! | TAAATTTTTGAATGTGTGAA+GGG | - | chr5_1:411224-411243 | Msa0709280:CDS | 20.0% |
| !!! | TAATGAAAATGGATTAATGA+TGG | - | chr5_1:411506-411525 | Msa0709280:CDS | 20.0% |
| !! | ATAATCATGTATCTTAAGAA+TGG | - | chr5_1:411844-411863 | Msa0709280:intron | 20.0% |
| !! | TTAAATACGTATATAGCTAA+TGG | - | chr5_1:412086-412105 | Msa0709280:intron | 20.0% |
| !! | AATAAAAAACAAAATTGAGG+GGG | + | chr5_1:412387-412406 | None:intergenic | 20.0% |
| !! | CAATAAAAAACAAAATTGAG+GGG | + | chr5_1:412388-412407 | None:intergenic | 20.0% |
| !! | GCAATAAAAAACAAAATTGA+GGG | + | chr5_1:412389-412408 | None:intergenic | 20.0% |
| !! | AGCAATAAAAAACAAAATTG+AGG | + | chr5_1:412390-412409 | None:intergenic | 20.0% |
| !!! | ATCTGTATAAGATTTAGTTT+GGG | - | chr5_1:412458-412477 | Msa0709280:intron | 20.0% |
| !!! | TAATCGATAATTTTAGAGTA+CGG | - | chr5_1:412736-412755 | Msa0709280:CDS | 20.0% |
| !!! | GTTGTTTTTATATGCCATAA+AGG | - | chr5_1:409733-409752 | Msa0709280:intron | 25.0% |
| !! | TTTTCACAAATTCTCCTTTA+TGG | + | chr5_1:409750-409769 | None:intergenic | 25.0% |
| ! | AACATAAGCAGTTATATGAA+AGG | - | chr5_1:409902-409921 | Msa0709280:CDS | 25.0% |
| ! | CAGTTATATGAAAGGATAAT+CGG | - | chr5_1:409910-409929 | Msa0709280:CDS | 25.0% |
| ! | ACACAAGACATTATATACTA+AGG | + | chr5_1:409963-409982 | None:intergenic | 25.0% |
| !!! | GTATATTTTGGATTCTAACT+TGG | - | chr5_1:410010-410029 | Msa0709280:intron | 25.0% |
| ! | TAATCAAGATCAACAAGATA+TGG | - | chr5_1:410645-410664 | Msa0709280:intron | 25.0% |
| !!! | TATTGAAAATGTTGTTTCCA+AGG | - | chr5_1:410747-410766 | Msa0709280:intron | 25.0% |
| !! | GTAAATTTTTGAATGTGTGA+AGG | - | chr5_1:411223-411242 | Msa0709280:CDS | 25.0% |
| ! | TCATAGAGATTAGAAGAAAT+AGG | + | chr5_1:411310-411329 | None:intergenic | 25.0% |
| ! | TTAATTATTTGCATTCCAGA+TGG | - | chr5_1:411379-411398 | Msa0709280:CDS | 25.0% |
| ! | TGAGTATATTATGAGATACT+GGG | - | chr5_1:411568-411587 | Msa0709280:CDS | 25.0% |
| ! | ATAAAATGACTAGCATACTA+GGG | + | chr5_1:411620-411639 | None:intergenic | 25.0% |
| ! | TATAAAATGACTAGCATACT+AGG | + | chr5_1:411621-411640 | None:intergenic | 25.0% |
| ! | TTGTTGAATACTAGATTCAT+GGG | - | chr5_1:411680-411699 | Msa0709280:CDS | 25.0% |
| ! | GATTATAATGTATTTCACAC+CGG | - | chr5_1:411742-411761 | Msa0709280:CDS | 25.0% |
| !!! | AGATGTTGATTTTCATTTGT+AGG | - | chr5_1:411820-411839 | Msa0709280:CDS | 25.0% |
| ! | TACTTAATAACACACTTTGT+AGG | - | chr5_1:412185-412204 | Msa0709280:intron | 25.0% |
| !!! | TGTTTTTTATTGCTATTGGA+AGG | - | chr5_1:412396-412415 | Msa0709280:intron | 25.0% |
| ! | CATCTGTATAAGATTTAGTT+TGG | - | chr5_1:412457-412476 | Msa0709280:intron | 25.0% |
| ! | ACATGATTTACATCATGATT+TGG | - | chr5_1:412492-412511 | Msa0709280:intron | 25.0% |
| ! | CATGATTTACATCATGATTT+GGG | - | chr5_1:412493-412512 | Msa0709280:intron | 25.0% |
| ! | AAATAACCAAAACCATTGTT+GGG | + | chr5_1:412646-412665 | None:intergenic | 25.0% |
| AATGACATTAGTACTTGTGT+AGG | - | chr5_1:409490-409509 | Msa0709280:three_prime_UTR | 30.0% | |
| AATAAGCTGAAAACGAGTTA+TGG | + | chr5_1:409546-409565 | None:intergenic | 30.0% | |
| !! | AGCTATTCTAAAGAGTTTTC+AGG | + | chr5_1:409569-409588 | None:intergenic | 30.0% |
| !! | CTACTGATATAAGTTTTGTG+AGG | + | chr5_1:409833-409852 | None:intergenic | 30.0% |
| CCTGTTTGGATAAATAACTT+AGG | + | chr5_1:409939-409958 | None:intergenic | 30.0% | |
| CCTAAGTTATTTATCCAAAC+AGG | - | chr5_1:409936-409955 | Msa0709280:CDS | 30.0% | |
| TTATATACTAAGGTCCTGTT+TGG | + | chr5_1:409953-409972 | None:intergenic | 30.0% | |
| !!! | TTGGAACTCTTTTTTACCAT+TGG | - | chr5_1:410029-410048 | Msa0709280:intron | 30.0% |
| !!! | TGGAACTCTTTTTTACCATT+GGG | - | chr5_1:410030-410049 | Msa0709280:intron | 30.0% |
| CATTGCTCTAACTTATACTT+TGG | - | chr5_1:410126-410145 | Msa0709280:intron | 30.0% | |
| ATCTTGTTGATCTTGATTAC+TGG | + | chr5_1:410644-410663 | None:intergenic | 30.0% | |
| GATATGGAAGAAAACATTGA+TGG | - | chr5_1:410661-410680 | Msa0709280:intron | 30.0% | |
| CAATGACATAGTAAATCACT+CGG | - | chr5_1:410942-410961 | Msa0709280:CDS | 30.0% | |
| ACAGGTGATCTATAATAACA+CGG | + | chr5_1:411189-411208 | None:intergenic | 30.0% | |
| GTGAGTATATTATGAGATAC+TGG | - | chr5_1:411567-411586 | Msa0709280:CDS | 30.0% | |
| TAAAATGACTAGCATACTAG+GGG | + | chr5_1:411619-411638 | None:intergenic | 30.0% | |
| GTTGTTGAATACTAGATTCA+TGG | - | chr5_1:411679-411698 | Msa0709280:CDS | 30.0% | |
| TGGTTAAACCATTTACAAGA+TGG | - | chr5_1:411864-411883 | Msa0709280:intron | 30.0% | |
| GGTTAAACCATTTACAAGAT+GGG | - | chr5_1:411865-411884 | Msa0709280:intron | 30.0% | |
| ATATCATCCCATCTTGTAAA+TGG | + | chr5_1:411875-411894 | None:intergenic | 30.0% | |
| !! | AGTAGTGGATATTCAAAACT+TGG | - | chr5_1:412349-412368 | Msa0709280:intron | 30.0% |
| ! | AAAGAACATGATTTAAGGCA+TGG | - | chr5_1:412433-412452 | Msa0709280:intron | 30.0% |
| !! | GATTTAGTTTGGGTGATATA+TGG | - | chr5_1:412468-412487 | Msa0709280:intron | 30.0% |
| !!! | ATTTGGGTTTTATTTGCCTA+GGG | - | chr5_1:412509-412528 | Msa0709280:intron | 30.0% |
| !!! | CTCCTTTTCTTTTTTTGATG+CGG | - | chr5_1:412534-412553 | Msa0709280:CDS | 30.0% |
| AACCGCATCAAAAAAAGAAA+AGG | + | chr5_1:412539-412558 | None:intergenic | 30.0% | |
| CTTTAAATACTTCCCAACAA+TGG | - | chr5_1:412631-412650 | Msa0709280:CDS | 30.0% | |
| GAAATAACCAAAACCATTGT+TGG | + | chr5_1:412647-412666 | None:intergenic | 30.0% | |
| !!! | ATGGTTTTGGTTATTTCTTC+TGG | - | chr5_1:412650-412669 | Msa0709280:CDS | 30.0% |
| CTTATGAGTAAATAGCAGAT+GGG | + | chr5_1:412688-412707 | None:intergenic | 30.0% | |
| ACTTATGAGTAAATAGCAGA+TGG | + | chr5_1:412689-412708 | None:intergenic | 30.0% | |
| AACAGCATTAAAACTCATGA+GGG | + | chr5_1:412714-412733 | None:intergenic | 30.0% | |
| TAACAGCATTAAAACTCATG+AGG | + | chr5_1:412715-412734 | None:intergenic | 30.0% | |
| ! | TCCATGGTTTGGATATCAAA+GGG | + | chr5_1:409408-409427 | None:intergenic | 35.0% |
| ! | TTCCATGGTTTGGATATCAA+AGG | + | chr5_1:409409-409428 | None:intergenic | 35.0% |
| !! | TACCTTTGTTGATGGATTCA+GGG | + | chr5_1:409437-409456 | None:intergenic | 35.0% |
| !! | ATACCTTTGTTGATGGATTC+AGG | + | chr5_1:409438-409457 | None:intergenic | 35.0% |
| AAAAGGGATACCTTTGTTGA+TGG | + | chr5_1:409445-409464 | None:intergenic | 35.0% | |
| !! | TAAGTTTTGTGAGGCTGTTT+TGG | + | chr5_1:409824-409843 | None:intergenic | 35.0% |
| !! | TTCTAAAAGTGCTTATGAGC+TGG | + | chr5_1:409881-409900 | None:intergenic | 35.0% |
| !!! | TCTTTTTTACCATTGGGATG+TGG | - | chr5_1:410036-410055 | Msa0709280:intron | 35.0% |
| ! | TGTTAGTTGTCAAGTTTGCT+AGG | - | chr5_1:410059-410078 | Msa0709280:intron | 35.0% |
| !! | GTTAGTTGTCAAGTTTGCTA+GGG | - | chr5_1:410060-410079 | Msa0709280:intron | 35.0% |
| TGCTCTAACTTATACTTTGG+AGG | - | chr5_1:410129-410148 | Msa0709280:intron | 35.0% | |
| TTCACATTTACTGTTTGCAC+AGG | + | chr5_1:410196-410215 | None:intergenic | 35.0% | |
| TGCAAACAGTAAATGTGAAG+AGG | - | chr5_1:410197-410216 | Msa0709280:intron | 35.0% | |
| TGAAACTCTTCCAGAAATTC+CGG | - | chr5_1:410405-410424 | Msa0709280:CDS | 35.0% | |
| GATAAACATTGAAGGGAAGA+TGG | - | chr5_1:410486-410505 | Msa0709280:CDS | 35.0% | |
| AGATGATAAGACTTCAAACC+TGG | - | chr5_1:410696-410715 | Msa0709280:intron | 35.0% | |
| TATGCTTCTCATCATCACTT+TGG | + | chr5_1:410729-410748 | None:intergenic | 35.0% | |
| TGCATGTATCATATCATCCT+TGG | + | chr5_1:410767-410786 | None:intergenic | 35.0% | |
| ATACATGCAGAGAACAATGA+CGG | - | chr5_1:410778-410797 | Msa0709280:CDS | 35.0% | |
| AAATTTGCACTGCTATCTTC+AGG | + | chr5_1:410892-410911 | None:intergenic | 35.0% | |
| TGAAGATAGCAGTGCAAATT+TGG | - | chr5_1:410891-410910 | Msa0709280:CDS | 35.0% | |
| ATCTTTGTCTGAATCTACTG+TGG | - | chr5_1:411041-411060 | Msa0709280:CDS | 35.0% | |
| CAGAATGTTCTTCTCCAAAT+GGG | - | chr5_1:411090-411109 | Msa0709280:CDS | 35.0% | |
| TTACTTCAAATAGCAAGGAC+AGG | + | chr5_1:411207-411226 | None:intergenic | 35.0% | |
| AATAGCATATTGTGCTTCGT+AGG | + | chr5_1:411339-411358 | None:intergenic | 35.0% | |
| TTCACTGTTACTGCTGAAAT+TGG | - | chr5_1:411423-411442 | Msa0709280:CDS | 35.0% | |
| ! | AGGATTTTCTGTCCAAAATG+CGG | - | chr5_1:411447-411466 | Msa0709280:CDS | 35.0% |
| GCTGTCACTGTTAATGAAAA+TGG | - | chr5_1:411495-411514 | Msa0709280:CDS | 35.0% | |
| ATCAGATCTTATATCTCTCC+AGG | + | chr5_1:411769-411788 | None:intergenic | 35.0% | |
| CATCTATCTAAGAGAACTTG+CGG | + | chr5_1:411805-411824 | None:intergenic | 35.0% | |
| !!! | TTGGCTTTCTTCCTTGTTTT+AGG | + | chr5_1:412049-412068 | None:intergenic | 35.0% |
| AAACACACAAACAACCTTGT+TGG | + | chr5_1:412068-412087 | None:intergenic | 35.0% | |
| TTGAATATCCACTACTTACG+CGG | + | chr5_1:412345-412364 | None:intergenic | 35.0% | |
| !!! | GATTTGGGTTTTATTTGCCT+AGG | - | chr5_1:412508-412527 | Msa0709280:intron | 35.0% |
| !! | AAAAAGAAAAGGAGTACCCT+AGG | + | chr5_1:412528-412547 | None:intergenic | 35.0% |
| GATTCTCTTGTAGAATGAAG+AGG | + | chr5_1:412608-412627 | None:intergenic | 35.0% | |
| ! | ATACTTCCCAACAATGGTTT+TGG | - | chr5_1:412637-412656 | Msa0709280:CDS | 35.0% |
| ! | TTTGCAAACCCAACAGGTTT+TGG | - | chr5_1:409218-409237 | Msa0709280:three_prime_UTR | 40.0% |
| AGCATCTTCCAAAACCTGTT+GGG | + | chr5_1:409229-409248 | None:intergenic | 40.0% | |
| ACCAGCTTCAATAACAGCAT+TGG | + | chr5_1:409289-409308 | None:intergenic | 40.0% | |
| ! | TGTTTCTGTTCCCGAAGTTA+TGG | - | chr5_1:409338-409357 | Msa0709280:intron | 40.0% |
| ACGAATCTCCTCCATAACTT+CGG | + | chr5_1:409352-409371 | None:intergenic | 40.0% | |
| GAAAGCTTATGACGAGAAAC+AGG | + | chr5_1:409378-409397 | None:intergenic | 40.0% | |
| ! | TGGTTTGGATATCAAAGGGA+AGG | + | chr5_1:409404-409423 | None:intergenic | 40.0% |
| TCCCTTTGATATCCAAACCA+TGG | - | chr5_1:409404-409423 | Msa0709280:three_prime_UTR | 40.0% | |
| !! | ACCTTTGTTGATGGATTCAG+GGG | + | chr5_1:409436-409455 | None:intergenic | 40.0% |
| ACGAGTTATGGACATGTCAT+AGG | + | chr5_1:409534-409553 | None:intergenic | 40.0% | |
| ! | AAAGTGCTTATGAGCTGGTT+TGG | + | chr5_1:409876-409895 | None:intergenic | 40.0% |
| TTCACGGAACAAAACATCTC+AGG | - | chr5_1:410158-410177 | Msa0709280:intron | 40.0% | |
| TCACGGAACAAAACATCTCA+GGG | - | chr5_1:410159-410178 | Msa0709280:intron | 40.0% | |
| ACATTTACTGTTTGCACAGG+AGG | + | chr5_1:410193-410212 | None:intergenic | 40.0% | |
| GGGTTTGAATGTGCCTAATT+TGG | - | chr5_1:410246-410265 | Msa0709280:intron | 40.0% | |
| ATGTGCCTAATTTGGAAGAG+TGG | - | chr5_1:410254-410273 | Msa0709280:intron | 40.0% | |
| TGTGCCTAATTTGGAAGAGT+GGG | - | chr5_1:410255-410274 | Msa0709280:intron | 40.0% | |
| ATCGGAATTTGCATTGTCCT+CGG | + | chr5_1:410299-410318 | None:intergenic | 40.0% | |
| CAGAGGAAGGATTCTTGAAT+CGG | + | chr5_1:410317-410336 | None:intergenic | 40.0% | |
| TCCTCAAGATGATCAATCTG+AGG | - | chr5_1:410360-410379 | Msa0709280:CDS | 40.0% | |
| ACCTCAGATTGATCATCTTG+AGG | + | chr5_1:410364-410383 | None:intergenic | 40.0% | |
| ! | CAAGATGATCAATCTGAGGT+TGG | - | chr5_1:410364-410383 | Msa0709280:CDS | 40.0% |
| ! | TGATCAATCTGAGGTTGGTT+CGG | - | chr5_1:410369-410388 | Msa0709280:CDS | 40.0% |
| GATGGAATTGATGCATCTCA+AGG | - | chr5_1:410514-410533 | Msa0709280:intron | 40.0% | |
| !! | CAAGGACAAGTTGATGACAA+TGG | - | chr5_1:410532-410551 | Msa0709280:intron | 40.0% |
| ! | TTGATGACAATGGAGGTGAT+TGG | - | chr5_1:410542-410561 | Msa0709280:intron | 40.0% |
| !! | AACTCTGAAGCAGATAACTC+TGG | - | chr5_1:410816-410835 | Msa0709280:CDS | 40.0% |
| ! | AAGCAGATAACTCTGGAAGA+AGG | - | chr5_1:410823-410842 | Msa0709280:CDS | 40.0% |
| TGCAAAGTCACCAGTTATAC+AGG | + | chr5_1:411067-411086 | None:intergenic | 40.0% | |
| GCAGAATGTTCTTCTCCAAA+TGG | - | chr5_1:411089-411108 | Msa0709280:CDS | 40.0% | |
| GTAACAATTACCTGTGCAAC+TGG | + | chr5_1:411152-411171 | None:intergenic | 40.0% | |
| ATGACACTTGAGTATCCATC+TGG | + | chr5_1:411397-411416 | None:intergenic | 40.0% | |
| CTGTTACTGCTGAAATTGGA+AGG | - | chr5_1:411427-411446 | Msa0709280:CDS | 40.0% | |
| TTCTGTCCAAAATGCGGAAA+TGG | - | chr5_1:411453-411472 | Msa0709280:CDS | 40.0% | |
| AGTTACATTACGTGGCACAA+GGG | - | chr5_1:411545-411564 | Msa0709280:CDS | 40.0% | |
| AACGAGTTCTTTCAGTCACT+TGG | - | chr5_1:411645-411664 | Msa0709280:CDS | 40.0% | |
| ATCTTATATCTCTCCAGGAC+CGG | + | chr5_1:411764-411783 | None:intergenic | 40.0% | |
| TTCTCATTGCCTTTACCTCA+AGG | - | chr5_1:411956-411975 | Msa0709280:intron | 40.0% | |
| ! | TTTGAGGCAGTTGATCTTCA+CGG | + | chr5_1:412015-412034 | None:intergenic | 40.0% |
| TGAAGATCAACTGCCTCAAA+GGG | - | chr5_1:412015-412034 | Msa0709280:intron | 40.0% | |
| ! | TTAGGATGAAGTACCCTTTG+AGG | + | chr5_1:412031-412050 | None:intergenic | 40.0% |
| GGGTACTTCATCCTAAAACA+AGG | - | chr5_1:412035-412054 | Msa0709280:intron | 40.0% | |
| AACAAGGAAGAAAGCCAACA+AGG | - | chr5_1:412051-412070 | Msa0709280:intron | 40.0% | |
| TTCAGCCACCACAATTCTAA+GGG | - | chr5_1:412237-412256 | Msa0709280:intron | 40.0% | |
| AAGGAGATCCCTTAGAATTG+TGG | + | chr5_1:412248-412267 | None:intergenic | 40.0% | |
| ! | AGAGCATTAGCAACTTTCAG+TGG | - | chr5_1:412285-412304 | Msa0709280:intron | 40.0% |
| GAGCATTAGCAACTTTCAGT+GGG | - | chr5_1:412286-412305 | Msa0709280:intron | 40.0% | |
| CGTGAGTAGTGATTGTCATT+TGG | + | chr5_1:412321-412340 | None:intergenic | 40.0% | |
| TGAATATCCACTACTTACGC+GGG | + | chr5_1:412344-412363 | None:intergenic | 40.0% | |
| GTGGATATTCAAAACTTGGC+TGG | - | chr5_1:412353-412372 | Msa0709280:intron | 40.0% | |
| !! | AAGAACCAAAAGCATCGTGC+TGG | - | chr5_1:409145-409164 | Msa0709280:three_prime_UTR | 45.0% |
| !! | AAAAGTGGTGGTGGTTGTTG+AGG | + | chr5_1:409201-409220 | None:intergenic | 45.0% |
| TGTTGGGTTTGCAAAAGTGG+TGG | + | chr5_1:409213-409232 | None:intergenic | 45.0% | |
| !! | ACCACTTTTGCAAACCCAAC+AGG | - | chr5_1:409212-409231 | Msa0709280:three_prime_UTR | 45.0% |
| ACCTGTTGGGTTTGCAAAAG+TGG | + | chr5_1:409216-409235 | None:intergenic | 45.0% | |
| GAGCATCTTCCAAAACCTGT+TGG | + | chr5_1:409230-409249 | None:intergenic | 45.0% | |
| CAGCAACAGAGATACCATGA+CGG | + | chr5_1:409257-409276 | None:intergenic | 45.0% | |
| GCCAATGCTGTTATTGAAGC+TGG | - | chr5_1:409285-409304 | Msa0709280:intron | 45.0% | |
| GAAGCTGGTGAAAAGCTTCA+TGG | - | chr5_1:409300-409319 | Msa0709280:intron | 45.0% | |
| TTCTGTTCCCGAAGTTATGG+AGG | - | chr5_1:409341-409360 | Msa0709280:intron | 45.0% | |
| CGAATCTCCTCCATAACTTC+GGG | + | chr5_1:409351-409370 | None:intergenic | 45.0% | |
| !! | TTGTTGATGGATTCAGGGGT+TGG | + | chr5_1:409432-409451 | None:intergenic | 45.0% |
| ACCCCTGAATCCATCAACAA+AGG | - | chr5_1:409432-409451 | Msa0709280:three_prime_UTR | 45.0% | |
| !! | GCTTATGAGCTGGTTTGGAT+TGG | + | chr5_1:409871-409890 | None:intergenic | 45.0% |
| CAACTAACACCACATCCCAA+TGG | + | chr5_1:410048-410067 | None:intergenic | 45.0% | |
| !! | GTCAAGTTTGCTAGGGTTAC+TGG | - | chr5_1:410067-410086 | Msa0709280:intron | 45.0% |
| ! | ACTTTGGAGGCTCAGATTCA+CGG | - | chr5_1:410142-410161 | Msa0709280:intron | 45.0% |
| TTACTGTTTGCACAGGAGGT+GGG | + | chr5_1:410189-410208 | None:intergenic | 45.0% | |
| TTTACTGTTTGCACAGGAGG+TGG | + | chr5_1:410190-410209 | None:intergenic | 45.0% | |
| GCTTCCCACTCTTCCAAATT+AGG | + | chr5_1:410262-410281 | None:intergenic | 45.0% | |
| ! | TTTGGAAGAGTGGGAAGCAT+TGG | - | chr5_1:410264-410283 | Msa0709280:intron | 45.0% |
| TTCAAGAATCCTTCCTCTGC+AGG | - | chr5_1:410318-410337 | Msa0709280:intron | 45.0% | |
| TTCAAACTCAAGTCCTGCAG+AGG | + | chr5_1:410334-410353 | None:intergenic | 45.0% | |
| TCATCACTCTCCGGAATTTC+TGG | + | chr5_1:410418-410437 | None:intergenic | 45.0% | |
| !! | GGACAAGTTGATGACAATGG+AGG | - | chr5_1:410535-410554 | Msa0709280:intron | 45.0% |
| CTATCTTCAGGAGACAGACT+TGG | + | chr5_1:410880-410899 | None:intergenic | 45.0% | |
| ATGATGCCAGTGAGCAAAGT+TGG | - | chr5_1:411010-411029 | Msa0709280:CDS | 45.0% | |
| AAGCATCCAACTTTGCTCAC+TGG | + | chr5_1:411019-411038 | None:intergenic | 45.0% | |
| TCTACTGTGGCCTGTATAAC+TGG | - | chr5_1:411054-411073 | Msa0709280:CDS | 45.0% | |
| TTCAGCAGTAACAGTGAAGC+AGG | + | chr5_1:411421-411440 | None:intergenic | 45.0% | |
| TGTCCAAAATGCGGAAATGG+TGG | - | chr5_1:411456-411475 | Msa0709280:CDS | 45.0% | |
| TAATGTAACTCGAGGTCGAC+GGG | + | chr5_1:411535-411554 | None:intergenic | 45.0% | |
| GTAATGTAACTCGAGGTCGA+CGG | + | chr5_1:411536-411555 | None:intergenic | 45.0% | |
| GAGTTACATTACGTGGCACA+AGG | - | chr5_1:411544-411563 | Msa0709280:CDS | 45.0% | |
| AATGTATTTCACACCGGTCC+TGG | - | chr5_1:411748-411767 | Msa0709280:CDS | 45.0% | |
| TCATTGCCTTTACCTCAAGG+TGG | - | chr5_1:411959-411978 | Msa0709280:intron | 45.0% | |
| GTGAAGATCAACTGCCTCAA+AGG | - | chr5_1:412014-412033 | Msa0709280:intron | 45.0% | |
| AAAGAACACCACACTCTCGT+GGG | + | chr5_1:412118-412137 | None:intergenic | 45.0% | |
| TAAAGAACACCACACTCTCG+TGG | + | chr5_1:412119-412138 | None:intergenic | 45.0% | |
| GTAGGACGACGACTTCTATA+TGG | - | chr5_1:412203-412222 | Msa0709280:intron | 45.0% | |
| CTTCAGCCACCACAATTCTA+AGG | - | chr5_1:412236-412255 | Msa0709280:intron | 45.0% | |
| GAGATCCCTTAGAATTGTGG+TGG | + | chr5_1:412245-412264 | None:intergenic | 45.0% | |
| AGTTGCTAATGCTCTCCTGA+CGG | + | chr5_1:412280-412299 | None:intergenic | 45.0% | |
| !! | TTTATTTATTAATTAATGTT+TGG | - | chr5_1:409621-409640 | Msa0709280:CDS | 5.0% |
| !! | TAATTAATAAATAATAGATT+TGG | - | chr5_1:411713-411732 | Msa0709280:CDS | 5.0% |
| ! | CTACTCCAGCACGATGCTTT+TGG | + | chr5_1:409153-409172 | None:intergenic | 50.0% |
| CTGGAGTAGCGTAGTGAAGA+AGG | - | chr5_1:409164-409183 | Msa0709280:three_prime_UTR | 50.0% | |
| GAGTAGCGTAGTGAAGAAGG+AGG | - | chr5_1:409167-409186 | Msa0709280:three_prime_UTR | 50.0% | |
| TGGGTTTGCAAAAGTGGTGG+TGG | + | chr5_1:409210-409229 | None:intergenic | 50.0% | |
| GAAGATGCTCGTAACCGTCA+TGG | - | chr5_1:409240-409259 | Msa0709280:three_prime_UTR | 50.0% | |
| TGTGAAGAGGTTGCCTGAGA+AGG | - | chr5_1:410210-410229 | Msa0709280:intron | 50.0% | |
| !! | AGAGTGGGAAGCATTGGAAC+AGG | - | chr5_1:410270-410289 | Msa0709280:intron | 50.0% |
| ! | AGCATTGGAACAGGAAACCG+AGG | - | chr5_1:410279-410298 | Msa0709280:intron | 50.0% |
| AACTCAAGTCCTGCAGAGGA+AGG | + | chr5_1:410330-410349 | None:intergenic | 50.0% | |
| ATTCCGGAGAGTGATGAACG+TGG | - | chr5_1:410421-410440 | Msa0709280:CDS | 50.0% | |
| ATGAACGTGGCGGTTCAATG+AGG | - | chr5_1:410434-410453 | Msa0709280:CDS | 50.0% | |
| GAAGGGAAGATGGTTGCTGA+TGG | - | chr5_1:410496-410515 | Msa0709280:CDS | 50.0% | |
| TGAGTACTACGACTGACAGC+AGG | + | chr5_1:410571-410590 | None:intergenic | 50.0% | |
| CTGTCAGTCGTAGTACTCAC+AGG | - | chr5_1:410572-410591 | Msa0709280:intron | 50.0% | |
| ! | CATCACTTTGGTGCACATCC+AGG | + | chr5_1:410717-410736 | None:intergenic | 50.0% |
| CTGCTTCAGAGTTGCAGAGA+GGG | + | chr5_1:410809-410828 | None:intergenic | 50.0% | |
| TCTGCTTCAGAGTTGCAGAG+AGG | + | chr5_1:410810-410829 | None:intergenic | 50.0% | |
| CATCAGCAGCTTCACTTGAC+TGG | + | chr5_1:410978-410997 | None:intergenic | 50.0% | |
| TGGTGTATCTGTGATCCTCC+AGG | + | chr5_1:411132-411151 | None:intergenic | 50.0% | |
| CACAGATACACCAGTTGCAC+AGG | - | chr5_1:411139-411158 | Msa0709280:CDS | 50.0% | |
| ! | GTGCCACCATTTCCGCATTT+TGG | + | chr5_1:411462-411481 | None:intergenic | 50.0% |
| AAATGGTGGCACCTTGAGGA+AGG | - | chr5_1:411470-411489 | Msa0709280:CDS | 50.0% | |
| AGTGACAGCTACCTTCCTCA+AGG | + | chr5_1:411484-411503 | None:intergenic | 50.0% | |
| CGACCTCGAGTTACATTACG+TGG | - | chr5_1:411537-411556 | Msa0709280:CDS | 50.0% | |
| GTGCCACGTAATGTAACTCG+AGG | + | chr5_1:411543-411562 | None:intergenic | 50.0% | |
| TGCCTTTACCTCAAGGTGGA+AGG | - | chr5_1:411963-411982 | Msa0709280:intron | 50.0% | |
| GCCTTTACCTCAAGGTGGAA+GGG | - | chr5_1:411964-411983 | Msa0709280:intron | 50.0% | |
| TCCCTTCCACCTTGAGGTAA+AGG | + | chr5_1:411968-411987 | None:intergenic | 50.0% | |
| GGACGACGACTTCTATATGG+TGG | - | chr5_1:412206-412225 | Msa0709280:intron | 50.0% | |
| GTTGCTAATGCTCTCCTGAC+GGG | + | chr5_1:412279-412298 | None:intergenic | 50.0% | |
| !! | AGTGGTGGTGGTTGTTGAGG+TGG | + | chr5_1:409198-409217 | None:intergenic | 55.0% |
| !! | CAGGGGTTGGTTCCATGGTT+TGG | + | chr5_1:409419-409438 | None:intergenic | 55.0% |
| !! | GGATTCAGGGGTTGGTTCCA+TGG | + | chr5_1:409424-409443 | None:intergenic | 55.0% |
| GTTGCCTGAGAAGGACATGC+CGG | - | chr5_1:410219-410238 | Msa0709280:intron | 55.0% | |
| TTGCCTGAGAAGGACATGCC+GGG | - | chr5_1:410220-410239 | Msa0709280:intron | 55.0% | |
| TGAGAAGGACATGCCGGGAT+GGG | - | chr5_1:410225-410244 | Msa0709280:intron | 55.0% | |
| GGCACATTCAAACCCCATCC+CGG | + | chr5_1:410241-410260 | None:intergenic | 55.0% | |
| CCAGCAAGCGCAAACCCATT+TGG | + | chr5_1:411107-411126 | None:intergenic | 55.0% | |
| ! | CCAAATGGGTTTGCGCTTGC+TGG | - | chr5_1:411104-411123 | Msa0709280:CDS | 55.0% |
| ACTGCATCCCTTCCACCTTG+AGG | + | chr5_1:411974-411993 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTTGTTGAGGTGG+CGG | + | chr5_1:409195-409214 | None:intergenic | 60.0% |
| CATCCCGGCATGTCCTTCTC+AGG | + | chr5_1:410226-410245 | None:intergenic | 60.0% | |
| CTGAGAAGGACATGCCGGGA+TGG | - | chr5_1:410224-410243 | Msa0709280:intron | 60.0% | |
| GAGAAGGACATGCCGGGATG+GGG | - | chr5_1:410226-410245 | Msa0709280:intron | 60.0% | |
| CCGCCACGTTCATCACTCTC+CGG | + | chr5_1:410427-410446 | None:intergenic | 60.0% | |
| CCGGAGAGTGATGAACGTGG+CGG | - | chr5_1:410424-410443 | Msa0709280:CDS | 60.0% | |
| GCGGAAATGGTGGCACCTTG+AGG | - | chr5_1:411466-411485 | Msa0709280:CDS | 60.0% | |
| GGTCGTTTCCCACGAGAGTG+TGG | - | chr5_1:412107-412126 | Msa0709280:intron | 60.0% | |
| GCTAATGCTCTCCTGACGGG+AGG | + | chr5_1:412276-412295 | None:intergenic | 60.0% | |
| ACTCACGCCCGCGTAAGTAG+TGG | - | chr5_1:412334-412353 | Msa0709280:intron | 60.0% | |
| ! | GGTTTGCGCTTGCTGGCACC+TGG | - | chr5_1:411111-411130 | Msa0709280:CDS | 65.0% |
| ! | TTGCGCTTGCTGGCACCTGG+AGG | - | chr5_1:411114-411133 | Msa0709280:CDS | 65.0% |
| CTCCTTTCCAGCCTCCCGTC+AGG | - | chr5_1:412262-412281 | Msa0709280:intron | 65.0% | |
| CTCCTGACGGGAGGCTGGAA+AGG | + | chr5_1:412267-412286 | None:intergenic | 65.0% | |
| ATGCTCTCCTGACGGGAGGC+TGG | + | chr5_1:412272-412291 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 409141 | 412776 | 409141 | ID=Msa0709280;Name=Msa0709280 |
| chr5_1 | mRNA | 409141 | 412776 | 409141 | ID=Msa0709280-mRNA-1;Parent=Msa0709280;Name=Msa0709280-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.8|0.83|1|0.8|0.66|6|285|590 |
| chr5_1 | exon | 409141 | 409264 | 409141 | ID=Msa0709280-mRNA-1:exon:138;Parent=Msa0709280-mRNA-1 |
| chr5_1 | exon | 409403 | 409710 | 409403 | ID=Msa0709280-mRNA-1:exon:137;Parent=Msa0709280-mRNA-1 |
| chr5_1 | exon | 409845 | 409961 | 409845 | ID=Msa0709280-mRNA-1:exon:136;Parent=Msa0709280-mRNA-1 |
| chr5_1 | exon | 410351 | 410519 | 410351 | ID=Msa0709280-mRNA-1:exon:135;Parent=Msa0709280-mRNA-1 |
| chr5_1 | exon | 410757 | 411852 | 410757 | ID=Msa0709280-mRNA-1:exon:134;Parent=Msa0709280-mRNA-1 |
| chr5_1 | exon | 412533 | 412776 | 412533 | ID=Msa0709280-mRNA-1:exon:133;Parent=Msa0709280-mRNA-1 |
| chr5_1 | CDS | 412533 | 412776 | 412533 | ID=Msa0709280-mRNA-1:cds;Parent=Msa0709280-mRNA-1 |
| chr5_1 | CDS | 410757 | 411852 | 410757 | ID=Msa0709280-mRNA-1:cds;Parent=Msa0709280-mRNA-1 |
| chr5_1 | CDS | 410351 | 410519 | 410351 | ID=Msa0709280-mRNA-1:cds;Parent=Msa0709280-mRNA-1 |
| chr5_1 | CDS | 409845 | 409961 | 409845 | ID=Msa0709280-mRNA-1:cds;Parent=Msa0709280-mRNA-1 |
| chr5_1 | CDS | 409564 | 409710 | 409564 | ID=Msa0709280-mRNA-1:cds;Parent=Msa0709280-mRNA-1 |
| chr5_1 | three_prime_UTR | 409403 | 409563 | 409403 | ID=Msa0709280-mRNA-1:three_prime_utr;Parent=Msa0709280-mRNA-1 |
| chr5_1 | three_prime_UTR | 409141 | 409264 | 409141 | ID=Msa0709280-mRNA-1:three_prime_utr;Parent=Msa0709280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
