Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458370 | XP_013460330.1 | 81.301 | 246 | 35 | 2 | 8 | 250 | 6 | 243 | 1.46e-138 | 401 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458370 | sp|Q2N2K0|PHYK3_SOYBN | 73.061 | 245 | 61 | 2 | 11 | 250 | 17 | 261 | 2.01e-118 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458370 | A0A072UY92 | 81.301 | 246 | 35 | 2 | 8 | 250 | 6 | 243 | 6.99e-139 | 401 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045730 | Msa0458370 | -0.806591 | 7.634791e-50 | -8.615850e-47 |
| Msa0068020 | Msa0458370 | -0.822189 | 2.706579e-53 | -8.615850e-47 |
| Msa0113240 | Msa0458370 | -0.822299 | 2.550962e-53 | -8.615850e-47 |
| Msa0190590 | Msa0458370 | -0.834263 | 3.316101e-56 | -8.615850e-47 |
| Msa0230520 | Msa0458370 | -0.801774 | 7.681784e-49 | -8.615850e-47 |
| Msa0385500 | Msa0458370 | -0.806792 | 6.926375e-50 | -8.615850e-47 |
| Msa0413350 | Msa0458370 | 0.834295 | 3.256345e-56 | -8.615850e-47 |
| Msa0458370 | Msa0546030 | -0.861788 | 8.017608e-64 | -8.615850e-47 |
| Msa0458370 | Msa0588630 | 0.800547 | 1.369119e-48 | -8.615850e-47 |
| Msa0458370 | Msa0610550 | -0.821406 | 4.105746e-53 | -8.615850e-47 |
| Msa0458370 | Msa0615580 | -0.805405 | 1.356257e-49 | -8.615850e-47 |
| Msa0458370 | Msa0623200 | -0.805341 | 1.398954e-49 | -8.615850e-47 |
| Msa0458370 | Msa0634890 | -0.807847 | 4.138017e-50 | -8.615850e-47 |
| Msa0458370 | Msa0693210 | -0.854382 | 1.277979e-61 | -8.615850e-47 |
| Msa0458370 | Msa0699190 | -0.834881 | 2.318603e-56 | -8.615850e-47 |
| Msa0458370 | Msa0709280 | -0.817138 | 3.852199e-52 | -8.615850e-47 |
| Msa0458370 | Msa0806880 | -0.805362 | 1.384576e-49 | -8.615850e-47 |
| Msa0458370 | Msa0838370 | -0.825566 | 4.370277e-54 | -8.615850e-47 |
| Msa0458370 | Msa0858440 | -0.826893 | 2.113055e-54 | -8.615850e-47 |
| Msa0458370 | Msa0876170 | -0.813259 | 2.802069e-51 | -8.615850e-47 |
| Msa0458370 | Msa0888810 | -0.807355 | 5.264369e-50 | -8.615850e-47 |
| Msa0458370 | Msa0913240 | -0.807335 | 5.316409e-50 | -8.615850e-47 |
| Msa0458370 | Msa0992550 | -0.800065 | 1.716456e-48 | -8.615850e-47 |
| Msa0458370 | Msa1021120 | -0.819094 | 1.390927e-52 | -8.615850e-47 |
| Msa0458370 | Msa1042780 | -0.804055 | 2.595306e-49 | -8.615850e-47 |
| Msa0458370 | Msa1165780 | -0.823835 | 1.118453e-53 | -8.615850e-47 |
| Msa0458370 | Msa1175350 | -0.828429 | 9.034046e-55 | -8.615850e-47 |
| Msa0458370 | Msa1206260 | -0.811330 | 7.390893e-51 | -8.615850e-47 |
| Msa0458370 | Msa1208020 | -0.823300 | 1.492095e-53 | -8.615850e-47 |
| Msa0458370 | Msa1235460 | -0.800134 | 1.661685e-48 | -8.615850e-47 |
| Msa0458370 | Msa1315890 | -0.822012 | 2.973698e-53 | -8.615850e-47 |
| Msa0458370 | Msa1331250 | -0.806563 | 7.741307e-50 | -8.615850e-47 |
| Msa0458370 | Msa1339730 | -0.805364 | 1.383735e-49 | -8.615850e-47 |
| Msa0458370 | Msa1369190 | -0.838597 | 2.616698e-57 | -8.615850e-47 |
| Msa0458370 | Msa1374830 | -0.829140 | 6.081903e-55 | -8.615850e-47 |
| Msa0458370 | Msa1437860 | -0.818599 | 1.801978e-52 | -8.615850e-47 |
| Msa0348830 | Msa0458370 | -0.812730 | 3.659666e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458370 | MtrunA17_Chr3g0105721 | 81.301 | 246 | 35 | 2 | 8 | 250 | 6 | 243 | 1.35e-142 | 401 |
| Msa0458370 | MtrunA17_Chr4g0006501 | 85.876 | 177 | 25 | 0 | 74 | 250 | 30 | 206 | 5.90e-108 | 312 |
| Msa0458370 | MtrunA17_Chr4g0006481 | 83.616 | 177 | 29 | 0 | 74 | 250 | 5 | 181 | 7.70e-105 | 303 |
| Msa0458370 | MtrunA17_Chr1g0197711 | 49.359 | 156 | 79 | 0 | 95 | 250 | 90 | 245 | 1.98e-55 | 180 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458370 | AT5G58560.1 | 58.190 | 232 | 93 | 2 | 20 | 249 | 19 | 248 | 1.63e-88 | 265 |
| Msa0458370 | AT5G04490.2 | 41.573 | 178 | 104 | 0 | 72 | 249 | 65 | 242 | 6.67e-48 | 159 |
| Msa0458370 | AT5G04490.1 | 41.573 | 178 | 104 | 0 | 72 | 249 | 65 | 242 | 3.55e-47 | 159 |
Find 79 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCACCAGGGAGCTTCTT+AGG | 0.194549 | 3_3:-53874390 | Msa0458370:intron |
| TTCTATGCTGCTTTGGTTCC+GGG | 0.216874 | 3_3:-53874973 | Msa0458370:CDS |
| AATGGCATCTGCTGGATTCT+TGG | 0.238399 | 3_3:-53873956 | Msa0458370:CDS |
| TGTTATGTTGGCCATTATTC+AGG | 0.251844 | 3_3:-53875107 | Msa0458370:intron |
| TAGTGGCAGATGGGAGTTTC+CGG | 0.260619 | 3_3:+53876455 | None:intergenic |
| GTTCTATGCTGCTTTGGTTC+CGG | 0.265588 | 3_3:-53874974 | Msa0458370:CDS |
| CGTTTGCATCGATAATATAT+TGG | 0.273540 | 3_3:-53874339 | Msa0458370:CDS |
| GTGAAATCAATGAGCAGATT+TGG | 0.307790 | 3_3:-53874892 | Msa0458370:CDS |
| ATGGGAGTTTCCGGGGTAAT+GGG | 0.310016 | 3_3:+53876464 | None:intergenic |
| TTCCGGGAGTTAATATATTT+CGG | 0.327197 | 3_3:-53874957 | Msa0458370:CDS |
| TGAGCAGATTTGGAGATTAT+AGG | 0.329796 | 3_3:-53874882 | Msa0458370:intron |
| CGGATGCTTGTGACTGGACT+TGG | 0.336320 | 3_3:-53874937 | Msa0458370:CDS |
| TTTGTCTTTAGAAATTGAAT+AGG | 0.370244 | 3_3:-53875164 | Msa0458370:intron |
| CTATACAATTACCTGAATAA+TGG | 0.370307 | 3_3:+53875096 | None:intergenic |
| GCTGGATTCTTGGCTTCTGT+TGG | 0.392089 | 3_3:-53873946 | Msa0458370:CDS |
| TTGCACCAGGGAGCTTCTTA+GGG | 0.397821 | 3_3:-53874389 | Msa0458370:intron |
| GGCATCGTTCTATGCTGCTT+TGG | 0.401496 | 3_3:-53874980 | Msa0458370:CDS |
| GATGGGAGTTTCCGGGGTAA+TGG | 0.403545 | 3_3:+53876463 | None:intergenic |
| TATGCTTCACCACGACCCTT+TGG | 0.409288 | 3_3:-53876434 | Msa0458370:CDS |
| GATGTCGTTGGAAGGAGATT+TGG | 0.415045 | 3_3:-53874030 | Msa0458370:CDS |
| CATATTGCAGCAATGGAAAC+AGG | 0.416756 | 3_3:+53874307 | None:intergenic |
| GAGTTTCCGGGGTAATGGGG+TGG | 0.421305 | 3_3:+53876468 | None:intergenic |
| AAATGGGTGTGAGGAGAAGA+GGG | 0.434163 | 3_3:+53876572 | None:intergenic |
| AGTGGCAGATGGGAGTTTCC+GGG | 0.436295 | 3_3:+53876456 | None:intergenic |
| CTGGATTCTTGGCTTCTGTT+GGG | 0.437915 | 3_3:-53873945 | Msa0458370:CDS |
| GAAATGGGTGTGAGGAGAAG+AGG | 0.445038 | 3_3:+53876571 | None:intergenic |
| TTCGTTGCTACAGCTATCTC+TGG | 0.448980 | 3_3:-53876403 | Msa0458370:CDS |
| AATAGGAGAAGAATGGGAAA+TGG | 0.449779 | 3_3:+53876555 | None:intergenic |
| AAAATGGATGGAAAGTGAAA+GGG | 0.465762 | 3_3:-53876694 | Msa0458370:five_prime_UTR |
| ATAGGAGAAGAATGGGAAAT+GGG | 0.470223 | 3_3:+53876556 | None:intergenic |
| TGGGAGTTTCCGGGGTAATG+GGG | 0.480024 | 3_3:+53876465 | None:intergenic |
| TCAATTGCAATGGCATCTGC+TGG | 0.481330 | 3_3:-53873964 | Msa0458370:CDS |
| ATATTTCGGATGCTTGTGAC+TGG | 0.494875 | 3_3:-53874943 | Msa0458370:CDS |
| CAAATTACATATTGCAGCAA+TGG | 0.506230 | 3_3:+53874300 | None:intergenic |
| GGGAGAAGAAAACAAGGAGG+AGG | 0.508438 | 3_3:+53876489 | None:intergenic |
| GACTGGTATTCATGTTATGT+TGG | 0.513365 | 3_3:-53875119 | Msa0458370:CDS |
| AAGAGGGAGAGATGAAACAG+AGG | 0.519806 | 3_3:+53876588 | None:intergenic |
| CTGTTTCTTGTCTTAGAGTG+TGG | 0.526941 | 3_3:-53876372 | Msa0458370:CDS |
| GTGCAACAATCAATCAAAGA+AGG | 0.532403 | 3_3:-53876735 | Msa0458370:five_prime_UTR |
| AGAGGGAGAGATGAAACAGA+GGG | 0.533998 | 3_3:+53876589 | None:intergenic |
| GTCGTTGGAAGGAGATTTGG+TGG | 0.536236 | 3_3:-53874027 | Msa0458370:CDS |
| ATCCGAAATATATTAACTCC+CGG | 0.543539 | 3_3:+53874955 | None:intergenic |
| AACAATCAATCAAAGAAGGT+TGG | 0.547926 | 3_3:-53876731 | Msa0458370:five_prime_UTR |
| AGTTTCCGGGGTAATGGGGT+GGG | 0.549065 | 3_3:+53876469 | None:intergenic |
| AAACTTGTACATATATCCAT+TGG | 0.549524 | 3_3:-53875141 | Msa0458370:CDS |
| TGGTGAAGCATAGTGGCAGA+TGG | 0.552558 | 3_3:+53876445 | None:intergenic |
| ATTATTACAGTAATGACCGA+TGG | 0.553042 | 3_3:-53875002 | Msa0458370:intron |
| GCAATATGTAATTTGTGTGC+AGG | 0.561356 | 3_3:-53874292 | Msa0458370:CDS |
| TCAGGTATGGCCGATGTCGT+TGG | 0.567736 | 3_3:-53874042 | Msa0458370:intron |
| CTTCTCCCACCCCATTACCC+CGG | 0.572916 | 3_3:-53876474 | Msa0458370:CDS |
| GGGAATTGAGTCAAACTTGG+TGG | 0.573596 | 3_3:+53876609 | None:intergenic |
| AAATGGATGGAAAGTGAAAG+GGG | 0.574583 | 3_3:-53876693 | Msa0458370:five_prime_UTR |
| AATCAGAAACCAAAGGGTCG+TGG | 0.577821 | 3_3:+53876425 | None:intergenic |
| TGTAATTTGTGTGCAGGAGA+TGG | 0.579965 | 3_3:-53874286 | Msa0458370:intron |
| TGTACATATATCCATTGGAC+TGG | 0.580435 | 3_3:-53875136 | Msa0458370:CDS |
| GAGGAGGAAGAAGAAGTGAG+AGG | 0.581088 | 3_3:+53876505 | None:intergenic |
| AGAGGGAATTGAGTCAAACT+TGG | 0.581183 | 3_3:+53876606 | None:intergenic |
| CAACGAAATCAGAAACCAAA+GGG | 0.585300 | 3_3:+53876419 | None:intergenic |
| ATTGATTGTTGCACAATGGA+AGG | 0.588718 | 3_3:+53876744 | None:intergenic |
| CTACGCTGGTTCAATTGCAA+TGG | 0.593181 | 3_3:-53873974 | Msa0458370:CDS |
| TAACATGAATACCAGTCCAA+TGG | 0.597103 | 3_3:+53875125 | None:intergenic |
| AAGAATGGGAAATGGGTGTG+AGG | 0.600981 | 3_3:+53876563 | None:intergenic |
| TGCACCAGGGAGCTTCTTAG+GGG | 0.601951 | 3_3:-53874388 | Msa0458370:intron |
| GGTGAAGCATAGTGGCAGAT+GGG | 0.609521 | 3_3:+53876446 | None:intergenic |
| TTATTACAGTAATGACCGAT+GGG | 0.611208 | 3_3:-53875001 | Msa0458370:intron |
| GTATGGCCGATGTCGTTGGA+AGG | 0.615251 | 3_3:-53874038 | Msa0458370:CDS |
| TTTGATTGATTGTTGCACAA+TGG | 0.621787 | 3_3:+53876740 | None:intergenic |
| GCAACGAAATCAGAAACCAA+AGG | 0.628391 | 3_3:+53876418 | None:intergenic |
| AAATCTCCTTCCAACGACAT+CGG | 0.635423 | 3_3:+53874032 | None:intergenic |
| CAGCATAGAACGATGCCCAT+CGG | 0.637249 | 3_3:+53874986 | None:intergenic |
| GTGGCAGATGGGAGTTTCCG+GGG | 0.640332 | 3_3:+53876457 | None:intergenic |
| CATTGCAATTGAACCAGCGT+AGG | 0.645884 | 3_3:+53873975 | None:intergenic |
| TGGGGTGGGAGAAGAAAACA+AGG | 0.652187 | 3_3:+53876483 | None:intergenic |
| AATGGATGGAAAGTGAAAGG+GGG | 0.664706 | 3_3:-53876692 | Msa0458370:five_prime_UTR |
| AGGGTCGTGGTGAAGCATAG+TGG | 0.672822 | 3_3:+53876438 | None:intergenic |
| ACTTGGAATATATAAAGATG+AGG | 0.674796 | 3_3:-53874920 | Msa0458370:CDS |
| ATCGTTGCAGCATAATACAG+TGG | 0.703967 | 3_3:+53874364 | None:intergenic |
| GGTGGGAGAAGAAAACAAGG+AGG | 0.730283 | 3_3:+53876486 | None:intergenic |
| TCTGCTCATTGATTTCACAG+TGG | 0.750581 | 3_3:+53874897 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTAATATACTTTAG+GGG | - | chr3_3:53876176-53876195 | Msa0458370:intron | 10.0% |
| !! | GAAATAATATATTAACAAAA+AGG | + | chr3_3:53876645-53876664 | None:intergenic | 10.0% |
| !!! | TTTTGTTAATATATTATTTC+AGG | - | chr3_3:53876645-53876664 | Msa0458370:exon | 10.0% |
| !!! | TTTCTACTTTTTATTTATGT+TGG | - | chr3_3:53874410-53874429 | Msa0458370:intron | 15.0% |
| !!! | TTCTACTTTTTATTTATGTT+GGG | - | chr3_3:53874411-53874430 | Msa0458370:intron | 15.0% |
| !! | TTTGATCTGTTAAAAAATAT+GGG | - | chr3_3:53874460-53874479 | Msa0458370:intron | 15.0% |
| !! | TATGATTAAATTCATTGTTT+AGG | - | chr3_3:53874787-53874806 | Msa0458370:intron | 15.0% |
| !! | ATGATTAAATTCATTGTTTA+GGG | - | chr3_3:53874788-53874807 | Msa0458370:intron | 15.0% |
| !! | TGAAAAATTTCATAAACTTT+AGG | - | chr3_3:53876145-53876164 | Msa0458370:intron | 15.0% |
| !! | GAAAAATTTCATAAACTTTA+GGG | - | chr3_3:53876146-53876165 | Msa0458370:intron | 15.0% |
| !! | TCATTAAAAGACTAAATTAA+AGG | - | chr3_3:53876219-53876238 | Msa0458370:intron | 15.0% |
| !! | CATTAAAAGACTAAATTAAA+GGG | - | chr3_3:53876220-53876239 | Msa0458370:intron | 15.0% |
| !!! | TTAATATATTATTTCAGGTA+TGG | - | chr3_3:53876650-53876669 | Msa0458370:exon | 15.0% |
| !!! | GGTTGTTTTGAATAAAAAAA+TGG | - | chr3_3:53873995-53874014 | Msa0458370:CDS | 20.0% |
| !!! | GTTTTGAATAAAAAAATGGA+TGG | - | chr3_3:53873999-53874018 | Msa0458370:CDS | 20.0% |
| !! | GTTTGATCTGTTAAAAAATA+TGG | - | chr3_3:53874459-53874478 | Msa0458370:intron | 20.0% |
| !! | GTCAATATCACTATTATATT+CGG | - | chr3_3:53874949-53874968 | Msa0458370:CDS | 20.0% |
| !! | TGTATCAGTACTTATTAATT+TGG | - | chr3_3:53874982-53875001 | Msa0458370:CDS | 20.0% |
| !!! | TTTGTCTTTAGAAATTGAAT+AGG | - | chr3_3:53875541-53875560 | Msa0458370:intron | 20.0% |
| ! | TTGAATTTGGAGAGAAAAAT+AGG | + | chr3_3:53874170-53874189 | None:intergenic | 25.0% |
| !! | GTTGCATTTTATTGTGTTAA+GGG | - | chr3_3:53874433-53874452 | Msa0458370:intron | 25.0% |
| ! | TAAGACAAAAAGTTATGTTG+TGG | + | chr3_3:53874576-53874595 | None:intergenic | 25.0% |
| ! | CTTAGAAATCCAGAAATTTA+AGG | + | chr3_3:53874761-53874780 | None:intergenic | 25.0% |
| !! | CTTAAATTTCTGGATTTCTA+AGG | - | chr3_3:53874759-53874778 | Msa0458370:intron | 25.0% |
| ! | ACAACTCTTTACAAAAGAAA+TGG | + | chr3_3:53874818-53874837 | None:intergenic | 25.0% |
| !!! | TCACAAAAGTTGTTGATTTT+TGG | + | chr3_3:53875128-53875147 | None:intergenic | 25.0% |
| !!! | TCTACTTTTCCTTTGAAAAT+TGG | + | chr3_3:53875157-53875176 | None:intergenic | 25.0% |
| !! | TTAGCTTAACAAAGTTTTTC+TGG | + | chr3_3:53875371-53875390 | None:intergenic | 25.0% |
| ! | CTAAAAGATAAATCTTAACC+AGG | - | chr3_3:53875387-53875406 | Msa0458370:intron | 25.0% |
| ! | AAACTTGTACATATATCCAT+TGG | - | chr3_3:53875564-53875583 | Msa0458370:intron | 25.0% |
| ! | CTATACAATTACCTGAATAA+TGG | + | chr3_3:53875612-53875631 | None:intergenic | 25.0% |
| ! | AAGAAAGATCATTCAACAAA+AGG | + | chr3_3:53875681-53875700 | None:intergenic | 25.0% |
| ! | ACTTGGAATATATAAAGATG+AGG | - | chr3_3:53875785-53875804 | Msa0458370:intron | 25.0% |
| !! | AGTAATATCCATTTTGTATC+AGG | + | chr3_3:53875975-53875994 | None:intergenic | 25.0% |
| ! | ATATACTTTAGATACTGATC+TGG | + | chr3_3:53876055-53876074 | None:intergenic | 25.0% |
| ! | TAGTCATTGTTAATATGCTA+GGG | - | chr3_3:53876087-53876106 | Msa0458370:intron | 25.0% |
| ! | TTCCAAAATCTTAAAGTTGT+TGG | - | chr3_3:53876529-53876548 | Msa0458370:CDS | 25.0% |
| !!! | ATCCAACAACTTTAAGATTT+TGG | + | chr3_3:53876534-53876553 | None:intergenic | 25.0% |
| TTTGATTGATTGTTGCACAA+TGG | + | chr3_3:53873968-53873987 | None:intergenic | 30.0% | |
| AACAATCAATCAAAGAAGGT+TGG | - | chr3_3:53873974-53873993 | Msa0458370:CDS | 30.0% | |
| AAAAATGGATGGAAAGTGAA+AGG | - | chr3_3:53874010-53874029 | Msa0458370:CDS | 30.0% | |
| AAAATGGATGGAAAGTGAAA+GGG | - | chr3_3:53874011-53874030 | Msa0458370:CDS | 30.0% | |
| GAGAAAAATAGGAGAAGAAT+GGG | + | chr3_3:53874159-53874178 | None:intergenic | 30.0% | |
| AGAGAAAAATAGGAGAAGAA+TGG | + | chr3_3:53874160-53874179 | None:intergenic | 30.0% | |
| ! | AGGAAAAATGGGTTTGAATT+TGG | + | chr3_3:53874183-53874202 | None:intergenic | 30.0% |
| ! | AAAAAGAGGACTTTTTGATC+AGG | - | chr3_3:53874367-53874386 | Msa0458370:CDS | 30.0% |
| ! | GGTTGCATTTTATTGTGTTA+AGG | - | chr3_3:53874432-53874451 | Msa0458370:intron | 30.0% |
| !!! | TCTGATTTTTAAGTTGCTCA+TGG | - | chr3_3:53874489-53874508 | Msa0458370:intron | 30.0% |
| !!! | CTGATTTTTAAGTTGCTCAT+GGG | - | chr3_3:53874490-53874509 | Msa0458370:intron | 30.0% |
| TTATTGTCTTGTACGATGTT+TGG | + | chr3_3:53874640-53874659 | None:intergenic | 30.0% | |
| TCGATACCTTAAAAGTTTGT+CGG | - | chr3_3:53874665-53874684 | Msa0458370:intron | 30.0% | |
| TGAAACACACCTTAAATTTC+TGG | - | chr3_3:53874749-53874768 | Msa0458370:intron | 30.0% | |
| ATTCATTGTGATTTAACGCT+TGG | - | chr3_3:53875009-53875028 | Msa0458370:intron | 30.0% | |
| GCTCTTTATAAAAAGCTTCA+TGG | + | chr3_3:53875089-53875108 | None:intergenic | 30.0% | |
| ! | TGATAACCACCAATTTTCAA+AGG | - | chr3_3:53875145-53875164 | Msa0458370:CDS | 30.0% |
| !! | ACTTTTCCTTTGAAAATTGG+TGG | + | chr3_3:53875154-53875173 | None:intergenic | 30.0% |
| TCTGGATAGAAGTTAGATAA+AGG | + | chr3_3:53875353-53875372 | None:intergenic | 30.0% | |
| GCAAATCAGCAACTATATAA+TGG | + | chr3_3:53875461-53875480 | None:intergenic | 30.0% | |
| ATTATTACAGTAATGACCGA+TGG | - | chr3_3:53875703-53875722 | Msa0458370:intron | 30.0% | |
| TTATTACAGTAATGACCGAT+GGG | - | chr3_3:53875704-53875723 | Msa0458370:intron | 30.0% | |
| TTCCGGGAGTTAATATATTT+CGG | - | chr3_3:53875748-53875767 | Msa0458370:intron | 30.0% | |
| ATCCGAAATATATTAACTCC+CGG | + | chr3_3:53875753-53875772 | None:intergenic | 30.0% | |
| ACTTCAAGAGACTTAATTGA+GGG | + | chr3_3:53876020-53876039 | None:intergenic | 30.0% | |
| TACTTCAAGAGACTTAATTG+AGG | + | chr3_3:53876021-53876040 | None:intergenic | 30.0% | |
| GTAGTCATTGTTAATATGCT+AGG | - | chr3_3:53876086-53876105 | Msa0458370:intron | 30.0% | |
| CTTTACGTTATTCCTTCATT+TGG | - | chr3_3:53876279-53876298 | Msa0458370:intron | 30.0% | |
| ! | CGTTTGCATCGATAATATAT+TGG | - | chr3_3:53876366-53876385 | Msa0458370:CDS | 30.0% |
| CAAATTACATATTGCAGCAA+TGG | + | chr3_3:53876408-53876427 | None:intergenic | 30.0% | |
| TACATAGGACTAAAAGCAAT+TGG | + | chr3_3:53876461-53876480 | None:intergenic | 30.0% | |
| TTAGTCCTATGTACTGAATT+AGG | - | chr3_3:53876468-53876487 | Msa0458370:CDS | 30.0% | |
| ! | GGAATATTTAGCTTATGACA+TGG | + | chr3_3:53876513-53876532 | None:intergenic | 30.0% |
| GTTGGATGAAAAGACATAAT+CGG | - | chr3_3:53876547-53876566 | Msa0458370:CDS | 30.0% | |
| AAGGAGAAAATCATGTTCTA+GGG | + | chr3_3:53876626-53876645 | None:intergenic | 30.0% | |
| AAAGGAGAAAATCATGTTCT+AGG | + | chr3_3:53876627-53876646 | None:intergenic | 30.0% | |
| !!! | TAGGACTTGTTTTTGTTGTA+AGG | + | chr3_3:53876714-53876733 | None:intergenic | 30.0% |
| ATTGATTGTTGCACAATGGA+AGG | + | chr3_3:53873964-53873983 | None:intergenic | 35.0% | |
| GTGCAACAATCAATCAAAGA+AGG | - | chr3_3:53873970-53873989 | Msa0458370:CDS | 35.0% | |
| AAATGGATGGAAAGTGAAAG+GGG | - | chr3_3:53874012-53874031 | Msa0458370:CDS | 35.0% | |
| ATAGGAGAAGAATGGGAAAT+GGG | + | chr3_3:53874152-53874171 | None:intergenic | 35.0% | |
| AATAGGAGAAGAATGGGAAA+TGG | + | chr3_3:53874153-53874172 | None:intergenic | 35.0% | |
| GAAGAAGTGAGAGGAAAAAT+GGG | + | chr3_3:53874194-53874213 | None:intergenic | 35.0% | |
| AGAAGAAGTGAGAGGAAAAA+TGG | + | chr3_3:53874195-53874214 | None:intergenic | 35.0% | |
| CAACGAAATCAGAAACCAAA+GGG | + | chr3_3:53874289-53874308 | None:intergenic | 35.0% | |
| ! | CCTTATCCGACAAACTTTTA+AGG | + | chr3_3:53874674-53874693 | None:intergenic | 35.0% |
| CCTTAAAAGTTTGTCGGATA+AGG | - | chr3_3:53874671-53874690 | Msa0458370:intron | 35.0% | |
| ! | CTTTTCAAATCAGTGCTTGT+TGG | + | chr3_3:53875049-53875068 | None:intergenic | 35.0% |
| AGGAAAAGTAGATAGTGACA+CGG | - | chr3_3:53875165-53875184 | Msa0458370:intron | 35.0% | |
| ACTTTCTCTCTCTATTGCTT+TGG | + | chr3_3:53875194-53875213 | None:intergenic | 35.0% | |
| GAGAGATAAAGTTGTCACAT+AGG | - | chr3_3:53875233-53875252 | Msa0458370:intron | 35.0% | |
| TCACATAGGTTGTCACAAAA+TGG | - | chr3_3:53875247-53875266 | Msa0458370:intron | 35.0% | |
| TATAAGCTTCCTGCATAAGA+TGG | - | chr3_3:53875293-53875312 | Msa0458370:intron | 35.0% | |
| ! | ACTAGTGCTATCTTTGAAAG+AGG | - | chr3_3:53875410-53875429 | Msa0458370:intron | 35.0% |
| ! | CTAGTGCTATCTTTGAAAGA+GGG | - | chr3_3:53875411-53875430 | Msa0458370:intron | 35.0% |
| TGTACATATATCCATTGGAC+TGG | - | chr3_3:53875569-53875588 | Msa0458370:intron | 35.0% | |
| TAACATGAATACCAGTCCAA+TGG | + | chr3_3:53875583-53875602 | None:intergenic | 35.0% | |
| GACTGGTATTCATGTTATGT+TGG | - | chr3_3:53875586-53875605 | Msa0458370:intron | 35.0% | |
| TGTTATGTTGGCCATTATTC+AGG | - | chr3_3:53875598-53875617 | Msa0458370:intron | 35.0% | |
| GTGAAATCAATGAGCAGATT+TGG | - | chr3_3:53875813-53875832 | Msa0458370:intron | 35.0% | |
| TGAGCAGATTTGGAGATTAT+AGG | - | chr3_3:53875823-53875842 | Msa0458370:intron | 35.0% | |
| ! | AATCCTATTTTACTGTCACG+TGG | - | chr3_3:53875924-53875943 | Msa0458370:intron | 35.0% |
| TAACCACGTGACAGTAAAAT+AGG | + | chr3_3:53875930-53875949 | None:intergenic | 35.0% | |
| AATCCAGACCTGATACAAAA+TGG | - | chr3_3:53875964-53875983 | Msa0458370:intron | 35.0% | |
| ! | TATCCATTTTGTATCAGGTC+TGG | + | chr3_3:53875970-53875989 | None:intergenic | 35.0% |
| !! | GAGGGTTTATTTTCACAGAT+AGG | + | chr3_3:53876002-53876021 | None:intergenic | 35.0% |
| ! | GCAATATGTAATTTGTGTGC+AGG | - | chr3_3:53876413-53876432 | Msa0458370:CDS | 35.0% |
| CATTGCCTAATTCAGTACAT+AGG | + | chr3_3:53876476-53876495 | None:intergenic | 35.0% | |
| TCAAATAAGCTGCACTACAA+AGG | - | chr3_3:53876577-53876596 | Msa0458370:CDS | 35.0% | |
| AATGGATGGAAAGTGAAAGG+GGG | - | chr3_3:53874013-53874032 | Msa0458370:CDS | 40.0% | |
| AGAGGGAATTGAGTCAAACT+TGG | + | chr3_3:53874102-53874121 | None:intergenic | 40.0% | |
| GCAACGAAATCAGAAACCAA+AGG | + | chr3_3:53874290-53874309 | None:intergenic | 40.0% | |
| ! | CTGTTTCTTGTCTTAGAGTG+TGG | - | chr3_3:53874333-53874352 | Msa0458370:CDS | 40.0% |
| TGGCAAGAAACTGCAAAAAG+AGG | - | chr3_3:53874353-53874372 | Msa0458370:CDS | 40.0% | |
| TGTCTTGTACGATGTTTGGT+AGG | + | chr3_3:53874636-53874655 | None:intergenic | 40.0% | |
| CTTCGTACGTCGTTTATTGT+CGG | + | chr3_3:53874878-53874897 | None:intergenic | 40.0% | |
| ACAATAAACGACGTACGAAG+TGG | - | chr3_3:53874878-53874897 | Msa0458370:intron | 40.0% | |
| AAGCTCATTCCATCTTATGC+AGG | + | chr3_3:53875305-53875324 | None:intergenic | 40.0% | |
| ! | AGGAGCTTCTAAAAGAGTTC+AGG | + | chr3_3:53875333-53875352 | None:intergenic | 40.0% |
| TTCAAAGATAGCACTAGTCC+TGG | + | chr3_3:53875408-53875427 | None:intergenic | 40.0% | |
| ! | TCTTTGAAAGAGGGTAATGC+TGG | - | chr3_3:53875420-53875439 | Msa0458370:intron | 40.0% |
| ATATTTCGGATGCTTGTGAC+TGG | - | chr3_3:53875762-53875781 | Msa0458370:intron | 40.0% | |
| !! | TCTGCTCATTGATTTCACAG+TGG | + | chr3_3:53875811-53875830 | None:intergenic | 40.0% |
| AGGTCTGGATTAATCAACAC+CGG | + | chr3_3:53875955-53875974 | None:intergenic | 40.0% | |
| GAAGAAGTGAGACCAAATGA+AGG | + | chr3_3:53876294-53876313 | None:intergenic | 40.0% | |
| TCACTTCTTCATTTGCACCA+GGG | - | chr3_3:53876304-53876323 | Msa0458370:intron | 40.0% | |
| ATCGTTGCAGCATAATACAG+TGG | + | chr3_3:53876344-53876363 | None:intergenic | 40.0% | |
| CATATTGCAGCAATGGAAAC+AGG | + | chr3_3:53876401-53876420 | None:intergenic | 40.0% | |
| ! | TGTAATTTGTGTGCAGGAGA+TGG | - | chr3_3:53876419-53876438 | Msa0458370:CDS | 40.0% |
| AAATCTCCTTCCAACGACAT+CGG | + | chr3_3:53876676-53876695 | None:intergenic | 40.0% | |
| AACAAAAACAAGTCCTACGC+TGG | - | chr3_3:53876717-53876736 | Msa0458370:five_prime_UTR | 40.0% | |
| GGGAATTGAGTCAAACTTGG+TGG | + | chr3_3:53874099-53874118 | None:intergenic | 45.0% | |
| AGAGGGAGAGATGAAACAGA+GGG | + | chr3_3:53874119-53874138 | None:intergenic | 45.0% | |
| AAGAGGGAGAGATGAAACAG+AGG | + | chr3_3:53874120-53874139 | None:intergenic | 45.0% | |
| AAATGGGTGTGAGGAGAAGA+GGG | + | chr3_3:53874136-53874155 | None:intergenic | 45.0% | |
| AAGAATGGGAAATGGGTGTG+AGG | + | chr3_3:53874145-53874164 | None:intergenic | 45.0% | |
| AATCAGAAACCAAAGGGTCG+TGG | + | chr3_3:53874283-53874302 | None:intergenic | 45.0% | |
| TTCGTTGCTACAGCTATCTC+TGG | - | chr3_3:53874302-53874321 | Msa0458370:CDS | 45.0% | |
| CTCATGGGAGTCGACAAATT+GGG | - | chr3_3:53874505-53874524 | Msa0458370:intron | 45.0% | |
| TCATGGGAGTCGACAAATTG+GGG | - | chr3_3:53874506-53874525 | Msa0458370:intron | 45.0% | |
| !! | GTTCTATGCTGCTTTGGTTC+CGG | - | chr3_3:53875731-53875750 | Msa0458370:intron | 45.0% |
| !! | TTCTATGCTGCTTTGGTTCC+GGG | - | chr3_3:53875732-53875751 | Msa0458370:intron | 45.0% |
| TTACTGTCACGTGGTTATGC+CGG | - | chr3_3:53875933-53875952 | Msa0458370:intron | 45.0% | |
| CTCACTTCTTCATTTGCACC+AGG | - | chr3_3:53876303-53876322 | Msa0458370:intron | 45.0% | |
| !! | TGTTCTAGGGAGTCGAGATA+AGG | + | chr3_3:53876613-53876632 | None:intergenic | 45.0% |
| GATGTCGTTGGAAGGAGATT+TGG | - | chr3_3:53876675-53876694 | Msa0458370:five_prime_UTR | 45.0% | |
| CATTGCAATTGAACCAGCGT+AGG | + | chr3_3:53876733-53876752 | None:intergenic | 45.0% | |
| !! | CTACGCTGGTTCAATTGCAA+TGG | - | chr3_3:53876731-53876750 | Msa0458370:five_prime_UTR | 45.0% |
| TCAATTGCAATGGCATCTGC+TGG | - | chr3_3:53876741-53876760 | Msa0458370:five_prime_UTR | 45.0% | |
| AATGGCATCTGCTGGATTCT+TGG | - | chr3_3:53876749-53876768 | Msa0458370:five_prime_UTR | 45.0% | |
| CTGGATTCTTGGCTTCTGTT+GGG | - | chr3_3:53876760-53876779 | Msa0458370:five_prime_UTR | 45.0% | |
| !!! | TTATTATTTTAATATACTTT+AGG | - | chr3_3:53876174-53876193 | Msa0458370:intron | 5.0% |
| !!! | TATTATTTTAATATACTTTA+GGG | - | chr3_3:53876175-53876194 | Msa0458370:intron | 5.0% |
| GAAATGGGTGTGAGGAGAAG+AGG | + | chr3_3:53874137-53874156 | None:intergenic | 50.0% | |
| GAGGAGGAAGAAGAAGTGAG+AGG | + | chr3_3:53874203-53874222 | None:intergenic | 50.0% | |
| GGGAGAAGAAAACAAGGAGG+AGG | + | chr3_3:53874219-53874238 | None:intergenic | 50.0% | |
| GGTGGGAGAAGAAAACAAGG+AGG | + | chr3_3:53874222-53874241 | None:intergenic | 50.0% | |
| TGGGGTGGGAGAAGAAAACA+AGG | + | chr3_3:53874225-53874244 | None:intergenic | 50.0% | |
| ATGGGAGTTTCCGGGGTAAT+GGG | + | chr3_3:53874244-53874263 | None:intergenic | 50.0% | |
| TAGTGGCAGATGGGAGTTTC+CGG | + | chr3_3:53874253-53874272 | None:intergenic | 50.0% | |
| GGTGAAGCATAGTGGCAGAT+GGG | + | chr3_3:53874262-53874281 | None:intergenic | 50.0% | |
| TGGTGAAGCATAGTGGCAGA+TGG | + | chr3_3:53874263-53874282 | None:intergenic | 50.0% | |
| TATGCTTCACCACGACCCTT+TGG | - | chr3_3:53874271-53874290 | Msa0458370:intron | 50.0% | |
| GCTCATGGGAGTCGACAAAT+TGG | - | chr3_3:53874504-53874523 | Msa0458370:intron | 50.0% | |
| AGTCGACAAATTGGGGCGTA+AGG | - | chr3_3:53874513-53874532 | Msa0458370:intron | 50.0% | |
| CAGCATAGAACGATGCCCAT+CGG | + | chr3_3:53875722-53875741 | None:intergenic | 50.0% | |
| ! | GGCATCGTTCTATGCTGCTT+TGG | - | chr3_3:53875725-53875744 | Msa0458370:intron | 50.0% |
| TTTGCACCAGGGAGCTTCTT+AGG | - | chr3_3:53876315-53876334 | Msa0458370:intron | 50.0% | |
| TTGCACCAGGGAGCTTCTTA+GGG | - | chr3_3:53876316-53876335 | Msa0458370:intron | 50.0% | |
| GTCGTTGGAAGGAGATTTGG+TGG | - | chr3_3:53876678-53876697 | Msa0458370:five_prime_UTR | 50.0% | |
| GCTGGATTCTTGGCTTCTGT+TGG | - | chr3_3:53876759-53876778 | Msa0458370:five_prime_UTR | 50.0% | |
| !! | AGTTTCCGGGGTAATGGGGT+GGG | + | chr3_3:53874239-53874258 | None:intergenic | 55.0% |
| TGGGAGTTTCCGGGGTAATG+GGG | + | chr3_3:53874243-53874262 | None:intergenic | 55.0% | |
| GATGGGAGTTTCCGGGGTAA+TGG | + | chr3_3:53874245-53874264 | None:intergenic | 55.0% | |
| AGTGGCAGATGGGAGTTTCC+GGG | + | chr3_3:53874252-53874271 | None:intergenic | 55.0% | |
| AGGGTCGTGGTGAAGCATAG+TGG | + | chr3_3:53874270-53874289 | None:intergenic | 55.0% | |
| CGGATGCTTGTGACTGGACT+TGG | - | chr3_3:53875768-53875787 | Msa0458370:intron | 55.0% | |
| TGCACCAGGGAGCTTCTTAG+GGG | - | chr3_3:53876317-53876336 | Msa0458370:intron | 55.0% | |
| TCAGGTATGGCCGATGTCGT+TGG | - | chr3_3:53876663-53876682 | Msa0458370:five_prime_UTR | 55.0% | |
| GTATGGCCGATGTCGTTGGA+AGG | - | chr3_3:53876667-53876686 | Msa0458370:five_prime_UTR | 55.0% | |
| CTTCTCCCACCCCATTACCC+CGG | - | chr3_3:53874231-53874250 | Msa0458370:intron | 60.0% | |
| !! | GAGTTTCCGGGGTAATGGGG+TGG | + | chr3_3:53874240-53874259 | None:intergenic | 60.0% |
| GTGGCAGATGGGAGTTTCCG+GGG | + | chr3_3:53874251-53874270 | None:intergenic | 60.0% | |
| TGGTCCCCTAAGAAGCTCCC+TGG | + | chr3_3:53876324-53876343 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 53873942 | 53876785 | 53873942 | ID=Msa0458370;Name=Msa0458370 |
| chr3_3 | mRNA | 53873942 | 53876785 | 53873942 | ID=Msa0458370-mRNA-1;Parent=Msa0458370;Name=Msa0458370-mRNA-1;_AED=0.24;_eAED=0.24;_QI=129|1|0.8|1|1|1|5|0|250 |
| chr3_3 | exon | 53873942 | 53874060 | 53873942 | ID=Msa0458370-mRNA-1:exon:10612;Parent=Msa0458370-mRNA-1 |
| chr3_3 | exon | 53874287 | 53874402 | 53874287 | ID=Msa0458370-mRNA-1:exon:10611;Parent=Msa0458370-mRNA-1 |
| chr3_3 | exon | 53874883 | 53875014 | 53874883 | ID=Msa0458370-mRNA-1:exon:10610;Parent=Msa0458370-mRNA-1 |
| chr3_3 | exon | 53875108 | 53875175 | 53875108 | ID=Msa0458370-mRNA-1:exon:10609;Parent=Msa0458370-mRNA-1 |
| chr3_3 | exon | 53876339 | 53876785 | 53876339 | ID=Msa0458370-mRNA-1:exon:10608;Parent=Msa0458370-mRNA-1 |
| chr3_3 | five_prime_UTR | 53876657 | 53876785 | 53876657 | ID=Msa0458370-mRNA-1:five_prime_utr;Parent=Msa0458370-mRNA-1 |
| chr3_3 | CDS | 53876339 | 53876656 | 53876339 | ID=Msa0458370-mRNA-1:cds;Parent=Msa0458370-mRNA-1 |
| chr3_3 | CDS | 53875108 | 53875175 | 53875108 | ID=Msa0458370-mRNA-1:cds;Parent=Msa0458370-mRNA-1 |
| chr3_3 | CDS | 53874883 | 53875014 | 53874883 | ID=Msa0458370-mRNA-1:cds;Parent=Msa0458370-mRNA-1 |
| chr3_3 | CDS | 53874287 | 53874402 | 53874287 | ID=Msa0458370-mRNA-1:cds;Parent=Msa0458370-mRNA-1 |
| chr3_3 | CDS | 53873942 | 53874060 | 53873942 | ID=Msa0458370-mRNA-1:cds;Parent=Msa0458370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
