Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709600 | XP_003597581.1 | 85.283 | 265 | 27 | 1 | 1 | 253 | 1 | 265 | 2.39e-148 | 428 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709600 | G7IS52 | 85.283 | 265 | 27 | 1 | 1 | 253 | 1 | 265 | 1.14e-148 | 428 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0709600 | Msa0898040 | 0.800400 | 1.467025e-48 | -8.615850e-47 |
| Msa0709600 | Msa1165960 | 0.802608 | 5.176142e-49 | -8.615850e-47 |
| Msa0709600 | Msa1179950 | 0.803676 | 3.112217e-49 | -8.615850e-47 |
| Msa0709600 | Msa1179980 | 0.813315 | 2.723316e-51 | -8.615850e-47 |
| Msa0709600 | Msa1202580 | 0.800664 | 1.296086e-48 | -8.615850e-47 |
| Msa0709600 | Msa1270620 | 0.812425 | 4.266829e-51 | -8.615850e-47 |
| Msa0709600 | Msa1270690 | 0.814500 | 1.492508e-51 | -8.615850e-47 |
| Msa0709600 | Msa1295110 | 0.819889 | 9.162474e-53 | -8.615850e-47 |
| Msa0709600 | Msa1306990 | 0.810841 | 9.431313e-51 | -8.615850e-47 |
| Msa0709600 | Msa1364010 | 0.971473 | 3.217063e-133 | -8.615850e-47 |
| Msa0226460 | Msa0709600 | 0.804025 | 2.633556e-49 | -8.615850e-47 |
| Msa0265340 | Msa0709600 | 0.957783 | 1.176700e-115 | -8.615850e-47 |
| Msa0581130 | Msa0709600 | 0.801623 | 8.250682e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709600 | MtrunA17_Chr2g0330081 | 85.283 | 265 | 27 | 1 | 1 | 253 | 1 | 265 | 2.20e-152 | 428 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709600 | AT3G13780.1 | 40.625 | 288 | 158 | 5 | 1 | 275 | 14 | 301 | 2.47e-53 | 176 |
Find 76 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAAATTGATCCTGTTAA+AGG | 0.155025 | 5_1:+751331 | Msa0709600:CDS |
| GAAATTCGAAATGGGTCATT+TGG | 0.296722 | 5_1:+751204 | Msa0709600:CDS |
| TCAAAGTTATTACCTTTAAC+AGG | 0.314979 | 5_1:-751343 | None:intergenic |
| AAGGTTTCATTTCAAGTCAT+TGG | 0.319227 | 5_1:+751127 | Msa0709600:CDS |
| GAATGAAGCCTTGTATGTTT+AGG | 0.320634 | 5_1:+753344 | Msa0709600:three_prime_UTR |
| TCATTGGAAGAAACCCTATC+TGG | 0.338307 | 5_1:+751143 | Msa0709600:CDS |
| TGATCCGGAATGTGGAGAAT+TGG | 0.345241 | 5_1:+752778 | Msa0709600:CDS |
| ATGTTCTCATAACTGATAAT+TGG | 0.345555 | 5_1:+753423 | Msa0709600:three_prime_UTR |
| TCATCCTCACTTTCTTTGCT+AGG | 0.386031 | 5_1:-752819 | None:intergenic |
| TTGTTCTTCAAAACCCAGAT+AGG | 0.388052 | 5_1:-751157 | None:intergenic |
| GGATCATGCCCTTTGGATAC+TGG | 0.392754 | 5_1:-752761 | None:intergenic |
| GTATCTTTGATATCTCTCTT+AGG | 0.392852 | 5_1:-753008 | None:intergenic |
| TGTCTGCGAAAACACCCTTT+TGG | 0.394919 | 5_1:+751248 | Msa0709600:CDS |
| AAGGAACTTGTTGCTAAGGT+TGG | 0.407977 | 5_1:+752936 | Msa0709600:CDS |
| CTTCTTCAAATTGAACCAAA+AGG | 0.419549 | 5_1:-751263 | None:intergenic |
| TGAGGATGAGGAAGAGGAAG+AGG | 0.426013 | 5_1:+753142 | Msa0709600:CDS |
| GATCCGGAATGTGGAGAATT+GGG | 0.436535 | 5_1:+752779 | Msa0709600:CDS |
| AGGAACTTGTTGCTAAGGTT+GGG | 0.441377 | 5_1:+752937 | Msa0709600:CDS |
| ACATTCCGGATCATGCCCTT+TGG | 0.441791 | 5_1:-752768 | None:intergenic |
| TGAGGAAGAGGAAGAGGAGG+AGG | 0.442921 | 5_1:+753148 | Msa0709600:CDS |
| TGAGGATAAAAGGAAAATGA+AGG | 0.453909 | 5_1:+752851 | Msa0709600:CDS |
| GAAATGGGTCATTTGGAACT+TGG | 0.454601 | 5_1:+751211 | Msa0709600:CDS |
| TGTTTCTCGTCATCACGTTT+CGG | 0.455853 | 5_1:+751069 | Msa0709600:CDS |
| ACACTGTTCGGACGAGGTTG+CGG | 0.458112 | 5_1:+751025 | Msa0709600:CDS |
| ATGACTTGAAATGAAACCTT+AGG | 0.465906 | 5_1:-751124 | None:intergenic |
| TTCTTCAAATTGAACCAAAA+GGG | 0.471521 | 5_1:-751262 | None:intergenic |
| TGGTGATAGTGACGATGATA+AGG | 0.485152 | 5_1:+752917 | Msa0709600:CDS |
| TGACAATGAGGATGAGGAAG+AGG | 0.499436 | 5_1:+753136 | Msa0709600:CDS |
| CATCACAAGGCCACGGCACT+TGG | 0.512507 | 5_1:-753245 | None:intergenic |
| TAGCAAAGAAAGTGAGGATG+AGG | 0.513147 | 5_1:+752821 | Msa0709600:CDS |
| GCTGTGGCGGTGTAAAATCA+AGG | 0.516324 | 5_1:+753197 | Msa0709600:exon |
| AACAGCGACAAAACACTGTT+CGG | 0.516498 | 5_1:+751013 | Msa0709600:CDS |
| AATCAGACTCGTTGTTGAGT+TGG | 0.519462 | 5_1:-751093 | None:intergenic |
| TGTTCTTCAAAACCCAGATA+GGG | 0.524313 | 5_1:-751156 | None:intergenic |
| ACTCCCAATTCTCCACATTC+CGG | 0.528495 | 5_1:-752782 | None:intergenic |
| TGATAAGGAACTTGTTGCTA+AGG | 0.529588 | 5_1:+752932 | Msa0709600:CDS |
| GCAAGGTCTAAAGACAATAG+AGG | 0.531239 | 5_1:+752984 | Msa0709600:CDS |
| AGTATCCAAAGGGCATGATC+CGG | 0.532093 | 5_1:+752763 | Msa0709600:CDS |
| ATGGAGTTCGAAGGCGAAGA+TGG | 0.533843 | 5_1:+750971 | Msa0709600:CDS |
| GTCTGATTCAGAGCCTCCTA+AGG | 0.535965 | 5_1:+751108 | Msa0709600:CDS |
| TGATGAAGAAGATGAGGATG+AGG | 0.536649 | 5_1:+753103 | Msa0709600:CDS |
| GGATGAGGAAGAGGAAGAGG+AGG | 0.536791 | 5_1:+753145 | Msa0709600:CDS |
| TTAGACCTTGCGGAGTACCT+AGG | 0.545892 | 5_1:-752972 | None:intergenic |
| CATTGGAAGAAACCCTATCT+GGG | 0.552765 | 5_1:+751144 | Msa0709600:CDS |
| GACAAAACACTGTTCGGACG+AGG | 0.556592 | 5_1:+751019 | Msa0709600:CDS |
| AAACAATGACAATGAGGATG+AGG | 0.562409 | 5_1:+753130 | Msa0709600:CDS |
| GAGGATAAAAGGAAAATGAA+GGG | 0.567105 | 5_1:+752852 | Msa0709600:CDS |
| TCTATTGTCTTTAGACCTTG+CGG | 0.572441 | 5_1:-752982 | None:intergenic |
| TTGGGAAAGGTAAGAAACCT+AGG | 0.574841 | 5_1:+752955 | Msa0709600:CDS |
| AACAAAGATGACGAGTGGAC+TGG | 0.577011 | 5_1:+752897 | Msa0709600:CDS |
| CTTGTTGCTAAGGTTGGGAA+AGG | 0.577595 | 5_1:+752942 | Msa0709600:CDS |
| GAGTTTGACCAGTATCCAAA+GGG | 0.590357 | 5_1:+752753 | Msa0709600:CDS |
| ACTTGAAATGAAACCTTAGG+AGG | 0.593531 | 5_1:-751121 | None:intergenic |
| CTGTGGCGGTGTAAAATCAA+GGG | 0.601243 | 5_1:+753198 | Msa0709600:exon |
| AAAGGGCATGATCCGGAATG+TGG | 0.603271 | 5_1:+752770 | Msa0709600:CDS |
| GACGATGATGAGACGCTAGG+AGG | 0.603685 | 5_1:+753068 | Msa0709600:CDS |
| CACTACATATCAACATCACA+AGG | 0.606768 | 5_1:-753258 | None:intergenic |
| AACATAGTCCTAAACATACA+AGG | 0.620114 | 5_1:-753352 | None:intergenic |
| TGAGTTTGACCAGTATCCAA+AGG | 0.622122 | 5_1:+752752 | Msa0709600:CDS |
| GGAGCCTAGCAAAGAAAGTG+AGG | 0.635527 | 5_1:+752815 | Msa0709600:CDS |
| GAGACAACAAAGATGACGAG+TGG | 0.639451 | 5_1:+752892 | Msa0709600:CDS |
| GAATTGGGAGTGGTTTCTCG+AGG | 0.640949 | 5_1:+752794 | Msa0709600:CDS |
| TAATTCTGAATGGAGTTCGA+AGG | 0.641013 | 5_1:+750962 | Msa0709600:exon |
| GGAATGTGGAGAATTGGGAG+TGG | 0.641413 | 5_1:+752784 | Msa0709600:CDS |
| GGAACAAAACAATGACAATG+AGG | 0.654439 | 5_1:+753124 | Msa0709600:CDS |
| ATATCAACATCACAAGGCCA+CGG | 0.654785 | 5_1:-753252 | None:intergenic |
| TGTTACTGATGAAGAAGATG+AGG | 0.658205 | 5_1:+753097 | Msa0709600:CDS |
| GATGACGATGATGAGACGCT+AGG | 0.662670 | 5_1:+753065 | Msa0709600:CDS |
| TGTTTAGATACCAAGTGCCG+TGG | 0.663591 | 5_1:+753235 | Msa0709600:three_prime_UTR |
| AGATATCAAAGATACTAGTG+TGG | 0.683203 | 5_1:+753016 | Msa0709600:CDS |
| AGAAACCTAGGTACTCCGCA+AGG | 0.683889 | 5_1:+752967 | Msa0709600:CDS |
| AGAAGATGACGATGATGCTG+TGG | 0.684484 | 5_1:+753181 | Msa0709600:CDS |
| TGTGGCGGTGTAAAATCAAG+GGG | 0.688596 | 5_1:+753199 | Msa0709600:exon |
| AGATGACGATGATGCTGTGG+CGG | 0.690723 | 5_1:+753184 | Msa0709600:CDS |
| CGTGATGACGAGAAACAGTG+TGG | 0.730657 | 5_1:-751063 | None:intergenic |
| GTGGCGGTGTAAAATCAAGG+GGG | 0.792447 | 5_1:+753200 | Msa0709600:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTCATTTTCAATATA+AGG | + | chr5_1:752074-752093 | Msa0709600:intron | 10.0% |
| !!! | TTTTAACAAAATCGATAATT+TGG | + | chr5_1:751442-751461 | Msa0709600:intron | 15.0% |
| !! | TAATTTATTTAAGTATATCC+AGG | + | chr5_1:751685-751704 | Msa0709600:intron | 15.0% |
| !!! | AGTTTATTTTTGTGTTAATT+TGG | + | chr5_1:752013-752032 | Msa0709600:intron | 15.0% |
| !! | TACAAATTCCAATATTATTT+AGG | + | chr5_1:752151-752170 | Msa0709600:intron | 15.0% |
| !! | ATTATTCAGAAAAACATGTT+TGG | - | chr5_1:750946-750965 | None:intergenic | 20.0% |
| !!! | TTTTTCTGAATAATTCTGAA+TGG | + | chr5_1:750952-750971 | Msa0709600:exon | 20.0% |
| !!! | ATTTTCAAGAAATTCGAAAT+GGG | + | chr5_1:751196-751215 | Msa0709600:CDS | 20.0% |
| !! | AAAAATAGTTTCCATCAAAA+GGG | - | chr5_1:751370-751389 | None:intergenic | 20.0% |
| !! | TAGAATTATACTATCCTTAA+AGG | - | chr5_1:751649-751668 | None:intergenic | 20.0% |
| !! | TTAAGGATAGTATAATTCTA+AGG | + | chr5_1:751649-751668 | Msa0709600:intron | 20.0% |
| !! | AATAAGTTAAAAACAACTCA+TGG | - | chr5_1:751787-751806 | None:intergenic | 20.0% |
| !! | CTTATATATAAGCACTTATA+TGG | + | chr5_1:751898-751917 | Msa0709600:intron | 20.0% |
| !!! | TTCATTTTCAATATAAGGTA+TGG | + | chr5_1:752079-752098 | Msa0709600:intron | 20.0% |
| !!! | TCATTTTCAATATAAGGTAT+GGG | + | chr5_1:752080-752099 | Msa0709600:intron | 20.0% |
| !! | AACTTGATCCTAAATAATAT+TGG | - | chr5_1:752162-752181 | None:intergenic | 20.0% |
| !!! | GATTTTCAAGAAATTCGAAA+TGG | + | chr5_1:751195-751214 | Msa0709600:CDS | 25.0% |
| ! | TTCTTCAAATTGAACCAAAA+GGG | - | chr5_1:751265-751284 | None:intergenic | 25.0% |
| ! | TCAAAGTTATTACCTTTAAC+AGG | - | chr5_1:751346-751365 | None:intergenic | 25.0% |
| ! | AAAATAGTTTCCATCAAAAG+GGG | - | chr5_1:751369-751388 | None:intergenic | 25.0% |
| ! | CAAAAATAGTTTCCATCAAA+AGG | - | chr5_1:751371-751390 | None:intergenic | 25.0% |
| !!! | GAAAAGTAAGTTTTTTTAGC+TGG | + | chr5_1:751464-751483 | Msa0709600:intron | 25.0% |
| !! | TTTGAGAGTTTCTTTTGTAT+TGG | + | chr5_1:751589-751608 | Msa0709600:intron | 25.0% |
| !!! | TTTTAGTTTGACTGATTCTT+AGG | + | chr5_1:751726-751745 | Msa0709600:intron | 25.0% |
| !! | ATTAAGTTGTTTATCCTAAC+AGG | + | chr5_1:751946-751965 | Msa0709600:intron | 25.0% |
| !! | TTAAGTTGTTTATCCTAACA+GGG | + | chr5_1:751947-751966 | Msa0709600:intron | 25.0% |
| ! | ATCATAAACTATAGTACTCA+TGG | - | chr5_1:751989-752008 | None:intergenic | 25.0% |
| ! | AAAGTATACATGTCCTTAAA+AGG | - | chr5_1:752056-752075 | None:intergenic | 25.0% |
| !! | CATTTTCAATATAAGGTATG+GGG | + | chr5_1:752081-752100 | Msa0709600:intron | 25.0% |
| ! | GATGCTAATATTATAGAAGA+AGG | - | chr5_1:752110-752129 | None:intergenic | 25.0% |
| !!! | CTTTCATTTTTGTTGTTTCT+CGG | + | chr5_1:752190-752209 | Msa0709600:intron | 25.0% |
| !! | CTTCATTCCTTTTGTAAATT+TGG | + | chr5_1:752215-752234 | Msa0709600:intron | 25.0% |
| ! | TCGAATACTACCTATAAATA+TGG | + | chr5_1:752269-752288 | Msa0709600:intron | 25.0% |
| ! | CGAATACTACCTATAAATAT+GGG | + | chr5_1:752270-752289 | Msa0709600:intron | 25.0% |
| ! | CAGAATAATCCCATATTTAT+AGG | - | chr5_1:752282-752301 | None:intergenic | 25.0% |
| !!! | TAAAAAGTGTTGAACTTTTC+TGG | + | chr5_1:752340-752359 | Msa0709600:intron | 25.0% |
| !!! | AAAAAGTGTTGAACTTTTCT+GGG | + | chr5_1:752341-752360 | Msa0709600:intron | 25.0% |
| ! | AAAACAAATTCATGCGTAAA+TGG | - | chr5_1:752646-752665 | None:intergenic | 25.0% |
| !!! | AATTTTGAAAATGCAGAGTT+TGG | + | chr5_1:752711-752730 | Msa0709600:intron | 25.0% |
| ! | ATGTTCTCATAACTGATAAT+TGG | + | chr5_1:753423-753442 | Msa0709600:three_prime_UTR | 25.0% |
| ATTCAGAAAAACATGTTTGG+CGG | - | chr5_1:750943-750962 | None:intergenic | 30.0% | |
| !! | GCTGTTTTGTAAAGAGAATT+TGG | - | chr5_1:750999-751018 | None:intergenic | 30.0% |
| ATGACTTGAAATGAAACCTT+AGG | - | chr5_1:751127-751146 | None:intergenic | 30.0% | |
| ! | AAGGTTTCATTTCAAGTCAT+TGG | + | chr5_1:751127-751146 | Msa0709600:CDS | 30.0% |
| CTTCTTCAAATTGAACCAAA+AGG | - | chr5_1:751266-751285 | None:intergenic | 30.0% | |
| TCACAAATTGATCCTGTTAA+AGG | + | chr5_1:751331-751350 | Msa0709600:CDS | 30.0% | |
| GTATATTTGTGTAGCCTTTA+AGG | + | chr5_1:751632-751651 | Msa0709600:intron | 30.0% | |
| !! | ATAATTCTAAGGCTCTTGTT+TGG | + | chr5_1:751660-751679 | Msa0709600:intron | 30.0% |
| !! | GTTAGCTTAATAGCCTTTTA+AGG | + | chr5_1:752040-752059 | Msa0709600:intron | 30.0% |
| GAATTTGTAACCAACTAAAG+AGG | - | chr5_1:752140-752159 | None:intergenic | 30.0% | |
| CAAGCAACCAAATTTACAAA+AGG | - | chr5_1:752225-752244 | None:intergenic | 30.0% | |
| ! | CTTTTGTAAATTTGGTTGCT+TGG | + | chr5_1:752223-752242 | Msa0709600:intron | 30.0% |
| !!! | AAAAGTGTTGAACTTTTCTG+GGG | + | chr5_1:752342-752361 | Msa0709600:intron | 30.0% |
| GGTTAGAAATGGAAATGAAA+TGG | + | chr5_1:752363-752382 | Msa0709600:intron | 30.0% | |
| AATGGAAATGAAATGGTTAC+TGG | + | chr5_1:752370-752389 | Msa0709600:intron | 30.0% | |
| AACTGAAAATCTCTTTCTCA+AGG | - | chr5_1:752408-752427 | None:intergenic | 30.0% | |
| TGAATTATACTACCCTTAGA+AGG | - | chr5_1:752578-752597 | None:intergenic | 30.0% | |
| TTCTGTTTATGTTCACTTGA+TGG | + | chr5_1:752599-752618 | Msa0709600:intron | 30.0% | |
| ! | AATTCACAGTGATAGCTTTT+AGG | + | chr5_1:752669-752688 | Msa0709600:intron | 30.0% |
| !!! | AGTTTGGTTTTCTTGTTATG+AGG | + | chr5_1:752727-752746 | Msa0709600:CDS | 30.0% |
| !! | AGGATGATTTTGAGGATAAA+AGG | + | chr5_1:752841-752860 | Msa0709600:CDS | 30.0% |
| TGAGGATAAAAGGAAAATGA+AGG | + | chr5_1:752851-752870 | Msa0709600:CDS | 30.0% | |
| GAGGATAAAAGGAAAATGAA+GGG | + | chr5_1:752852-752871 | Msa0709600:CDS | 30.0% | |
| GTATCTTTGATATCTCTCTT+AGG | - | chr5_1:753011-753030 | None:intergenic | 30.0% | |
| AGATATCAAAGATACTAGTG+TGG | + | chr5_1:753016-753035 | Msa0709600:CDS | 30.0% | |
| AACATAGTCCTAAACATACA+AGG | - | chr5_1:753355-753374 | None:intergenic | 30.0% | |
| TAATTCTGAATGGAGTTCGA+AGG | + | chr5_1:750962-750981 | Msa0709600:exon | 35.0% | |
| ACTTGAAATGAAACCTTAGG+AGG | - | chr5_1:751124-751143 | None:intergenic | 35.0% | |
| TGTTCTTCAAAACCCAGATA+GGG | - | chr5_1:751159-751178 | None:intergenic | 35.0% | |
| TTGTTCTTCAAAACCCAGAT+AGG | - | chr5_1:751160-751179 | None:intergenic | 35.0% | |
| GAAATTCGAAATGGGTCATT+TGG | + | chr5_1:751204-751223 | Msa0709600:CDS | 35.0% | |
| ! | TTTTCGCAGACAAGCAAAAT+CGG | - | chr5_1:751240-751259 | None:intergenic | 35.0% |
| ! | ATAACTTTGACCCCTTTTGA+TGG | + | chr5_1:751356-751375 | Msa0709600:intron | 35.0% |
| TCCTGCTAAGAAAATGTCAT+TGG | - | chr5_1:751530-751549 | None:intergenic | 35.0% | |
| ! | GGATATGAGTTGCAAGTTTT+AGG | + | chr5_1:751610-751629 | Msa0709600:intron | 35.0% |
| ! | CTCATGGTTGACTTAGATTT+AGG | - | chr5_1:751973-751992 | None:intergenic | 35.0% |
| ! | TTGTCTTTTGAACTTGAGTG+TGG | + | chr5_1:752316-752335 | Msa0709600:intron | 35.0% |
| ! | TGTCTTTTGAACTTGAGTGT+GGG | + | chr5_1:752317-752336 | Msa0709600:intron | 35.0% |
| !!! | AACTTTTCTGGGGTTAGAAA+TGG | + | chr5_1:752352-752371 | Msa0709600:intron | 35.0% |
| AATCTCTTTCTCAAGGAATG+TGG | - | chr5_1:752401-752420 | None:intergenic | 35.0% | |
| TGCTGAATTCATGTCAACAA+TGG | + | chr5_1:752444-752463 | Msa0709600:intron | 35.0% | |
| TTATATCTTGCAAGTGTCTG+TGG | + | chr5_1:752544-752563 | Msa0709600:intron | 35.0% | |
| !! | TGATAAGGAACTTGTTGCTA+AGG | + | chr5_1:752932-752951 | Msa0709600:CDS | 35.0% |
| TCTATTGTCTTTAGACCTTG+CGG | - | chr5_1:752985-753004 | None:intergenic | 35.0% | |
| TGTTACTGATGAAGAAGATG+AGG | + | chr5_1:753097-753116 | Msa0709600:CDS | 35.0% | |
| GGAACAAAACAATGACAATG+AGG | + | chr5_1:753124-753143 | Msa0709600:CDS | 35.0% | |
| AAACAATGACAATGAGGATG+AGG | + | chr5_1:753130-753149 | Msa0709600:CDS | 35.0% | |
| CACTACATATCAACATCACA+AGG | - | chr5_1:753261-753280 | None:intergenic | 35.0% | |
| ! | GAATGAAGCCTTGTATGTTT+AGG | + | chr5_1:753344-753363 | Msa0709600:three_prime_UTR | 35.0% |
| AACAGCGACAAAACACTGTT+CGG | + | chr5_1:751013-751032 | Msa0709600:CDS | 40.0% | |
| TGTTTCTCGTCATCACGTTT+CGG | + | chr5_1:751069-751088 | Msa0709600:CDS | 40.0% | |
| AATCAGACTCGTTGTTGAGT+TGG | - | chr5_1:751096-751115 | None:intergenic | 40.0% | |
| TCATTGGAAGAAACCCTATC+TGG | + | chr5_1:751143-751162 | Msa0709600:CDS | 40.0% | |
| CATTGGAAGAAACCCTATCT+GGG | + | chr5_1:751144-751163 | Msa0709600:CDS | 40.0% | |
| ! | GAAATGGGTCATTTGGAACT+TGG | + | chr5_1:751211-751230 | Msa0709600:CDS | 40.0% |
| ! | GCCAATGACATTTTCTTAGC+AGG | + | chr5_1:751526-751545 | Msa0709600:intron | 40.0% |
| !! | GCTATTTTCACAAGCTATCC+TGG | - | chr5_1:751706-751725 | None:intergenic | 40.0% |
| !! | GCTATTTTCACAAGCTAGCA+TGG | - | chr5_1:751822-751841 | None:intergenic | 40.0% |
| ACTTAGATTTAGGCCCTGTT+AGG | - | chr5_1:751963-751982 | None:intergenic | 40.0% | |
| ATCCTGCTTTCCTCTTTAGT+TGG | + | chr5_1:752127-752146 | Msa0709600:intron | 40.0% | |
| AACCAACTAAAGAGGAAAGC+AGG | - | chr5_1:752132-752151 | None:intergenic | 40.0% | |
| TGAGTTTGACCAGTATCCAA+AGG | + | chr5_1:752752-752771 | Msa0709600:CDS | 40.0% | |
| GAGTTTGACCAGTATCCAAA+GGG | + | chr5_1:752753-752772 | Msa0709600:CDS | 40.0% | |
| TCATCCTCACTTTCTTTGCT+AGG | - | chr5_1:752822-752841 | None:intergenic | 40.0% | |
| TAGCAAAGAAAGTGAGGATG+AGG | + | chr5_1:752821-752840 | Msa0709600:CDS | 40.0% | |
| ! | TGAGGATGAGGATGATTTTG+AGG | + | chr5_1:752833-752852 | Msa0709600:CDS | 40.0% |
| ! | TGGTGATAGTGACGATGATA+AGG | + | chr5_1:752917-752936 | Msa0709600:CDS | 40.0% |
| !! | AAGGAACTTGTTGCTAAGGT+TGG | + | chr5_1:752936-752955 | Msa0709600:CDS | 40.0% |
| !! | AGGAACTTGTTGCTAAGGTT+GGG | + | chr5_1:752937-752956 | Msa0709600:CDS | 40.0% |
| TTGGGAAAGGTAAGAAACCT+AGG | + | chr5_1:752955-752974 | Msa0709600:CDS | 40.0% | |
| GCAAGGTCTAAAGACAATAG+AGG | + | chr5_1:752984-753003 | Msa0709600:CDS | 40.0% | |
| TGATGAAGAAGATGAGGATG+AGG | + | chr5_1:753103-753122 | Msa0709600:CDS | 40.0% | |
| ATATCAACATCACAAGGCCA+CGG | - | chr5_1:753255-753274 | None:intergenic | 40.0% | |
| ! | TGTCTGCGAAAACACCCTTT+TGG | + | chr5_1:751248-751267 | Msa0709600:CDS | 45.0% |
| TGTGGCTGTGTAACCTTCTA+AGG | + | chr5_1:752562-752581 | Msa0709600:intron | 45.0% | |
| GTGGCTGTGTAACCTTCTAA+GGG | + | chr5_1:752563-752582 | Msa0709600:intron | 45.0% | |
| ! | AGTATCCAAAGGGCATGATC+CGG | + | chr5_1:752763-752782 | Msa0709600:CDS | 45.0% |
| TGATCCGGAATGTGGAGAAT+TGG | + | chr5_1:752778-752797 | Msa0709600:CDS | 45.0% | |
| GATCCGGAATGTGGAGAATT+GGG | + | chr5_1:752779-752798 | Msa0709600:CDS | 45.0% | |
| ACTCCCAATTCTCCACATTC+CGG | - | chr5_1:752785-752804 | None:intergenic | 45.0% | |
| GAGACAACAAAGATGACGAG+TGG | + | chr5_1:752892-752911 | Msa0709600:CDS | 45.0% | |
| AACAAAGATGACGAGTGGAC+TGG | + | chr5_1:752897-752916 | Msa0709600:CDS | 45.0% | |
| CTTGTTGCTAAGGTTGGGAA+AGG | + | chr5_1:752942-752961 | Msa0709600:CDS | 45.0% | |
| TGACAATGAGGATGAGGAAG+AGG | + | chr5_1:753136-753155 | Msa0709600:CDS | 45.0% | |
| AGAAGATGACGATGATGCTG+TGG | + | chr5_1:753181-753200 | Msa0709600:CDS | 45.0% | |
| CTGTGGCGGTGTAAAATCAA+GGG | + | chr5_1:753198-753217 | Msa0709600:exon | 45.0% | |
| TGTGGCGGTGTAAAATCAAG+GGG | + | chr5_1:753199-753218 | Msa0709600:exon | 45.0% | |
| ! | TGTTTAGATACCAAGTGCCG+TGG | + | chr5_1:753235-753254 | Msa0709600:three_prime_UTR | 45.0% |
| ATGGAGTTCGAAGGCGAAGA+TGG | + | chr5_1:750971-750990 | Msa0709600:CDS | 50.0% | |
| GACAAAACACTGTTCGGACG+AGG | + | chr5_1:751019-751038 | Msa0709600:CDS | 50.0% | |
| ! | CGTGATGACGAGAAACAGTG+TGG | - | chr5_1:751066-751085 | None:intergenic | 50.0% |
| GTCTGATTCAGAGCCTCCTA+AGG | + | chr5_1:751108-751127 | Msa0709600:CDS | 50.0% | |
| GGATCATGCCCTTTGGATAC+TGG | - | chr5_1:752764-752783 | None:intergenic | 50.0% | |
| ACATTCCGGATCATGCCCTT+TGG | - | chr5_1:752771-752790 | None:intergenic | 50.0% | |
| ! | AAAGGGCATGATCCGGAATG+TGG | + | chr5_1:752770-752789 | Msa0709600:CDS | 50.0% |
| GGAATGTGGAGAATTGGGAG+TGG | + | chr5_1:752784-752803 | Msa0709600:CDS | 50.0% | |
| GAATTGGGAGTGGTTTCTCG+AGG | + | chr5_1:752794-752813 | Msa0709600:CDS | 50.0% | |
| GGAGCCTAGCAAAGAAAGTG+AGG | + | chr5_1:752815-752834 | Msa0709600:CDS | 50.0% | |
| AGAAACCTAGGTACTCCGCA+AGG | + | chr5_1:752967-752986 | Msa0709600:CDS | 50.0% | |
| ! | TTAGACCTTGCGGAGTACCT+AGG | - | chr5_1:752975-752994 | None:intergenic | 50.0% |
| GATGACGATGATGAGACGCT+AGG | + | chr5_1:753065-753084 | Msa0709600:CDS | 50.0% | |
| TGAGGATGAGGAAGAGGAAG+AGG | + | chr5_1:753142-753161 | Msa0709600:CDS | 50.0% | |
| AGATGACGATGATGCTGTGG+CGG | + | chr5_1:753184-753203 | Msa0709600:CDS | 50.0% | |
| GCTGTGGCGGTGTAAAATCA+AGG | + | chr5_1:753197-753216 | Msa0709600:exon | 50.0% | |
| GTGGCGGTGTAAAATCAAGG+GGG | + | chr5_1:753200-753219 | Msa0709600:exon | 50.0% | |
| ACACTGTTCGGACGAGGTTG+CGG | + | chr5_1:751025-751044 | Msa0709600:CDS | 55.0% | |
| GACGATGATGAGACGCTAGG+AGG | + | chr5_1:753068-753087 | Msa0709600:CDS | 55.0% | |
| GGATGAGGAAGAGGAAGAGG+AGG | + | chr5_1:753145-753164 | Msa0709600:CDS | 55.0% | |
| TGAGGAAGAGGAAGAGGAGG+AGG | + | chr5_1:753148-753167 | Msa0709600:CDS | 55.0% | |
| CATCACAAGGCCACGGCACT+TGG | - | chr5_1:753248-753267 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 750922 | 753454 | 750922 | ID=Msa0709600;Name=Msa0709600 |
| chr5_1 | mRNA | 750922 | 753454 | 750922 | ID=Msa0709600-mRNA-1;Parent=Msa0709600;Name=Msa0709600-mRNA-1;_AED=0.00;_eAED=0.00;_QI=49|1|1|1|1|1|2|243|288 |
| chr5_1 | exon | 750922 | 751352 | 750922 | ID=Msa0709600-mRNA-1:exon:322;Parent=Msa0709600-mRNA-1 |
| chr5_1 | exon | 752727 | 753454 | 752727 | ID=Msa0709600-mRNA-1:exon:323;Parent=Msa0709600-mRNA-1 |
| chr5_1 | five_prime_UTR | 750922 | 750970 | 750922 | ID=Msa0709600-mRNA-1:five_prime_utr;Parent=Msa0709600-mRNA-1 |
| chr5_1 | CDS | 750971 | 751352 | 750971 | ID=Msa0709600-mRNA-1:cds;Parent=Msa0709600-mRNA-1 |
| chr5_1 | CDS | 752727 | 753211 | 752727 | ID=Msa0709600-mRNA-1:cds;Parent=Msa0709600-mRNA-1 |
| chr5_1 | three_prime_UTR | 753212 | 753454 | 753212 | ID=Msa0709600-mRNA-1:three_prime_utr;Parent=Msa0709600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
