AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1165960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165960 MtrunA17_Chr7g0269261 91.198 409 5 1 7 415 1 378 0.0 765
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165960 AT2G47790.1 64.250 400 107 4 20 415 25 392 0.0 521

Find 98 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTTAGGATTGATGGATTT+TGG 0.136354 7_4:+57999121 Msa1165960:three_prime_UTR
AGCTTCTGAAAGTTGGAATT+TGG 0.165604 7_4:+57997450 Msa1165960:CDS
CTCATTTCTGCTTCAGTTGA+TGG 0.185036 7_4:+57996488 Msa1165960:CDS
CAAAATGTAGGTGATTAATA+TGG 0.195603 7_4:+57996851 Msa1165960:intron
ATGAGCTTGCCTTGTTCTTC+AGG 0.238064 7_4:-57996470 None:intergenic
GTACAATTCATCTCCATTAC+TGG 0.253066 7_4:+57996953 Msa1165960:CDS
GTCGTTTCACTGTAATTTAC+AGG 0.258641 7_4:-57998788 None:intergenic
AAACAGTCACAAACAATAAA+TGG 0.263729 7_4:+57994322 Msa1165960:exon
GGACGTACTTTGGGATGATT+TGG 0.280115 7_4:-57994460 None:intergenic
AACTCTATCCAAACTAATTT+CGG 0.290124 7_4:+57994422 Msa1165960:CDS
GAACAAGAGCTTAGAATATT+GGG 0.292886 7_4:-57994748 None:intergenic
CATCCACATGAGAATCTTCT+AGG 0.294934 7_4:-57995410 None:intergenic
TAAACTTGGGTTAGGATTGA+TGG 0.304510 7_4:+57999114 Msa1165960:three_prime_UTR
GCGTTTAACGTTGTTGGGTA+TGG 0.309545 7_4:-57994387 None:intergenic
TTGCATGTAATATTTGTAAT+GGG 0.313413 7_4:+57999237 Msa1165960:intron
AGAACAAGAGCTTAGAATAT+TGG 0.313825 7_4:-57994749 None:intergenic
CGGCACAAATGCGGGTACTT+TGG 0.324412 7_4:+57998757 Msa1165960:CDS
GGCACAAATGCGGGTACTTT+GGG 0.345345 7_4:+57998758 Msa1165960:CDS
AATCGTCACCGAAATTAGTT+TGG 0.355363 7_4:-57994430 None:intergenic
ATCTTGGATTTCAAGTTCAT+TGG 0.361402 7_4:+57998979 Msa1165960:CDS
TACAGTGAAACGACAACAAT+TGG 0.373503 7_4:+57998797 Msa1165960:CDS
ACCGAAGCGTTTAACGTTGT+TGG 0.380689 7_4:-57994393 None:intergenic
GCATCAAAACTAGTATTAGT+AGG 0.387663 7_4:-57999044 None:intergenic
GTTCTTCAGATGGTACTATC+AGG 0.389104 7_4:+57994767 Msa1165960:CDS
GAGAGAGTTATCAGAAGCTT+TGG 0.390315 7_4:+57996904 Msa1165960:CDS
CCCAGGTACTCTTGTGGGAT+TGG 0.391389 7_4:+57995364 Msa1165960:intron
CCAGTGGTGGGTCAATATTA+TGG 0.397482 7_4:+57994667 Msa1165960:CDS
ATTGCATGTAATATTTGTAA+TGG 0.405931 7_4:+57999236 Msa1165960:intron
GGATGGACAGGTGGGGAAGA+TGG 0.408251 7_4:+57998908 Msa1165960:CDS
ATGAACTTGAAATCCAAGAT+TGG 0.410585 7_4:-57998976 None:intergenic
CCGAAGCGTTTAACGTTGTT+GGG 0.411456 7_4:-57994392 None:intergenic
CGTTTAACGTTGTTGGGTAT+GGG 0.432856 7_4:-57994386 None:intergenic
TGCAATTGCGGTGGAAGAAA+AGG 0.434740 7_4:-57994284 None:intergenic
ATGTCCAGAGTTCATAGTTC+AGG 0.435022 7_4:+57998878 Msa1165960:CDS
GTACTTTAGCTTCTGAAAGT+TGG 0.459371 7_4:+57997443 Msa1165960:CDS
GAAATCTTCAGCTTCTCCAT+TGG 0.460403 7_4:+57995201 Msa1165960:CDS
GGACACAAGAACATTTCAAC+AGG 0.464750 7_4:+57994795 Msa1165960:CDS
ATCTTCAGCTTCTCCATTGG+AGG 0.466757 7_4:+57995204 Msa1165960:CDS
ACGTTGTTGGGTATGGGAAA+AGG 0.467623 7_4:-57994380 None:intergenic
CATCAAAACTAGTATTAGTA+GGG 0.468071 7_4:-57999043 None:intergenic
TGAGCTTGCCTTGTTCTTCA+GGG 0.472636 7_4:-57996469 None:intergenic
TTGTGAATGGAAGGGATGAT+TGG 0.474743 7_4:+57994596 Msa1165960:intron
ATCTGCATATTTGATACCAC+TGG 0.474964 7_4:+57996515 Msa1165960:CDS
AATGGAAGCAATTGCGGCCA+TGG 0.476431 7_4:+57994340 Msa1165960:exon
CTAAGCTCTTGTTCTTCAGA+TGG 0.477643 7_4:+57994757 Msa1165960:CDS
ATTATCCCAGGTACTCTTGT+GGG 0.479200 7_4:+57995359 Msa1165960:intron
CAGATGGTACTATCAGGACT+TGG 0.481372 7_4:+57994773 Msa1165960:CDS
CAGGTTTCTATTATCAATGC+TGG 0.488118 7_4:+57995168 Msa1165960:intron
AAAATGTAGGTGATTAATAT+GGG 0.496513 7_4:+57996852 Msa1165960:intron
TGCTGCGGGTTGTGATTCAC+AGG 0.496992 7_4:+57995245 Msa1165960:CDS
CACTTCTAACAACATCTGTA+TGG 0.503113 7_4:-57998847 None:intergenic
TTGATCGGCGGCACAAATGC+GGG 0.512819 7_4:+57998749 Msa1165960:CDS
AAGATGGTAGGCTATGTTGT+TGG 0.515760 7_4:+57998924 Msa1165960:CDS
CCCAACAACGTTAAACGCTT+CGG 0.516028 7_4:+57994392 Msa1165960:CDS
TTAACTCATATTGAAACTCT+CGG 0.520375 7_4:+57996930 Msa1165960:CDS
AATGCCTGAACTATGAACTC+TGG 0.526089 7_4:-57998882 None:intergenic
GCAATTGCGGTGGAAGAAAA+GGG 0.528056 7_4:-57994283 None:intergenic
CCATAATATTGACCCACCAC+TGG 0.537095 7_4:-57994667 None:intergenic
TAACTCATATTGAAACTCTC+GGG 0.537523 7_4:+57996931 Msa1165960:CDS
GGGAACATCAATTGCAAAGG+TGG 0.538474 7_4:+57996872 Msa1165960:CDS
GGACAGGTGGGGAAGATGGT+AGG 0.540295 7_4:+57998912 Msa1165960:CDS
AGTGGAAATTTAGTTGCTGC+GGG 0.541232 7_4:+57995231 Msa1165960:CDS
GAAACTGTATTCACCAGTGG+TGG 0.542400 7_4:+57994654 Msa1165960:CDS
ACAATAAATGGAAGCAATTG+CGG 0.543794 7_4:+57994334 Msa1165960:exon
AGCATTTGGGACTGGAAAGA+AGG 0.546349 7_4:+57997391 Msa1165960:CDS
AAGCTGAAGATTTCTTGAGA+TGG 0.552407 7_4:-57995192 None:intergenic
AAGGGATGATTGGAGTTCAA+TGG 0.555515 7_4:+57994606 Msa1165960:intron
TCAATATTATGGAGAGTGCA+AGG 0.560776 7_4:+57994678 Msa1165960:CDS
ACTAGTATTAGTAGGGGTGA+TGG 0.565765 7_4:-57999036 None:intergenic
GACTGTTTCTATGAATATGA+AGG 0.571440 7_4:-57994307 None:intergenic
TGCATGTAATATTTGTAATG+GGG 0.575782 7_4:+57999238 Msa1165960:intron
GGAACATCAATTGCAAAGGT+GGG 0.576460 7_4:+57996873 Msa1165960:CDS
GTTGATCGGCGGCACAAATG+CGG 0.581332 7_4:+57998748 Msa1165960:CDS
TTCTCCATTGGAGGACCTAG+TGG 0.584400 7_4:+57995213 Msa1165960:CDS
TCATGTGGATGATGTCACTC+AGG 0.584599 7_4:+57995422 Msa1165960:CDS
AGTGAAACGACAACAATTGG+AGG 0.594927 7_4:+57998800 Msa1165960:CDS
TAGTGGAAATTTAGTTGCTG+CGG 0.595599 7_4:+57995230 Msa1165960:CDS
AATTATCCCAGGTACTCTTG+TGG 0.598714 7_4:+57995358 Msa1165960:intron
GAACTATGAACTCTGGACAT+AGG 0.601738 7_4:-57998875 None:intergenic
TATGGGAACATCAATTGCAA+AGG 0.605817 7_4:+57996869 Msa1165960:CDS
TCGTTGTTCCTCGACATCCA+TGG 0.607781 7_4:-57994357 None:intergenic
AGATGGTACTATCAGGACTT+GGG 0.627841 7_4:+57994774 Msa1165960:CDS
ATTTCCACTAGGTCCTCCAA+TGG 0.630109 7_4:-57995217 None:intergenic
GCAGAAGCAATTCTCGAAGG+TGG 0.633134 7_4:+57998824 Msa1165960:CDS
AATTGCGGCCATGGATGTCG+AGG 0.639683 7_4:+57994349 Msa1165960:CDS
GGTGCAGAAGCAATTCTCGA+AGG 0.645612 7_4:+57998821 Msa1165960:CDS
GGATGATTGGAGTTCAATGG+CGG 0.648745 7_4:+57994609 Msa1165960:CDS
ATCGTCGTTAATATCTCCAG+TGG 0.649496 7_4:-57996531 None:intergenic
CGACGATGATCATCTAGAGT+CGG 0.653681 7_4:+57996547 Msa1165960:CDS
ATTATGTATCACTAGCGTCA+AGG 0.654361 7_4:+57999316 Msa1165960:three_prime_UTR
ATCAAAACTAGTATTAGTAG+GGG 0.658117 7_4:-57999042 None:intergenic
AAACTGTATTCACCAGTGGT+GGG 0.659751 7_4:+57994655 Msa1165960:CDS
CAATATTATGGAGAGTGCAA+GGG 0.660822 7_4:+57994679 Msa1165960:CDS
GCAGCAACTAAATTTCCACT+AGG 0.673218 7_4:-57995228 None:intergenic
AGTGAAACTGTATTCACCAG+TGG 0.687068 7_4:+57994651 Msa1165960:CDS
TGAATATGAAGGTGCAATTG+CGG 0.692798 7_4:-57994296 None:intergenic
ATATGAAGGTGCAATTGCGG+TGG 0.696941 7_4:-57994293 None:intergenic
ATGCCTAGAAGATTCTCATG+TGG 0.767526 7_4:+57995407 Msa1165960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATAGTTTCTATAAA+AGG + chr7_4:57997552-57997571 Msa1165960:intron 10.0%
!! TAAAATTAAATTAAAGTCTT+CGG - chr7_4:57998282-57998301 None:intergenic 10.0%
!! TAAATTGTATAAAATTTATG+AGG - chr7_4:57998305-57998324 None:intergenic 10.0%
!! AAAAAATAAATAAAAACCTT+TGG - chr7_4:57999069-57999088 None:intergenic 10.0%
!!! AAAGGTTTTTATTTATTTTT+TGG + chr7_4:57999068-57999087 Msa1165960:three_prime_UTR 10.0%
!!! TTAGTTTTTTTTATTAAACT+TGG + chr7_4:57999100-57999119 Msa1165960:three_prime_UTR 10.0%
!!! TAGTTTTTTTTATTAAACTT+GGG + chr7_4:57999101-57999120 Msa1165960:three_prime_UTR 10.0%
!!! TCTTTTTTAAAATATAAAAG+GGG - chr7_4:57999209-57999228 None:intergenic 10.0%
!!! TCTTTTTTAAAATATAAAAG+GGG - chr7_4:57999209-57999228 None:intergenic 10.0%
!! AATTAAGAAAAAAAAAAGTG+AGG + chr7_4:57994206-57994225 Msa1165960:five_prime_UTR 15.0%
!! TTGTTACTAATGTTATTATT+TGG + chr7_4:57994829-57994848 Msa1165960:intron 15.0%
!!! AATTAAGTTGTTTATCTATA+AGG - chr7_4:57994879-57994898 None:intergenic 15.0%
!!! TGATATAATTGTTATTTCTT+TGG + chr7_4:57995801-57995820 Msa1165960:intron 15.0%
!! AATACAAGGAATTAAATATT+TGG - chr7_4:57995916-57995935 None:intergenic 15.0%
!! TTATCTGAGTTAAATATATT+TGG - chr7_4:57996641-57996660 None:intergenic 15.0%
!!! ACATTTTTTCAAATTTTTAC+CGG + chr7_4:57997176-57997195 Msa1165960:intron 15.0%
!!! ATCACATTACATTTTTATTT+TGG - chr7_4:57997723-57997742 None:intergenic 15.0%
!! TTCTCTTTAAATTAATAATG+TGG + chr7_4:57998018-57998037 Msa1165960:intron 15.0%
!!! TTTCCATCATATTTTTTTGT+TGG - chr7_4:57994184-57994203 None:intergenic 20.0%
!!! TTTTATTTATGCCCTTAATT+TGG + chr7_4:57994549-57994568 Msa1165960:intron 20.0%
!! TTTATTTATGCCCTTAATTT+GGG + chr7_4:57994550-57994569 Msa1165960:intron 20.0%
!! TTATAAAACTCCCAAATTAA+GGG - chr7_4:57994563-57994582 None:intergenic 20.0%
!! ATTATAAAACTCCCAAATTA+AGG - chr7_4:57994564-57994583 None:intergenic 20.0%
!!! TTTGGGAGTTTTATAATTTT+TGG + chr7_4:57994567-57994586 Msa1165960:intron 20.0%
!!! TTGGGAGTTTTATAATTTTT+GGG + chr7_4:57994568-57994587 Msa1165960:intron 20.0%
!!! TATCAATCAGATTTTGTTTT+CGG + chr7_4:57994714-57994733 Msa1165960:CDS 20.0%
!! ATCTTATTGCAGAAAAATAA+TGG + chr7_4:57995857-57995876 Msa1165960:intron 20.0%
!! TTATAAATCTACAAGGAATA+AGG - chr7_4:57995891-57995910 None:intergenic 20.0%
!!! TTTGGTTTTATAAATCTACA+AGG - chr7_4:57995898-57995917 None:intergenic 20.0%
!!! TAGAATTTGCTTTTTAACTT+TGG + chr7_4:57996128-57996147 Msa1165960:intron 20.0%
!!! CAATTTACAACCTTTTTAAA+TGG + chr7_4:57996615-57996634 Msa1165960:intron 20.0%
!! ATATATTTGGCCATTTAAAA+AGG - chr7_4:57996628-57996647 None:intergenic 20.0%
!! CACATTTGAAAAAAAAAAAC+AGG + chr7_4:57996759-57996778 Msa1165960:intron 20.0%
!! AAAATGTAGGTGATTAATAT+GGG + chr7_4:57996852-57996871 Msa1165960:intron 20.0%
!!! ACATTACATTTTTATTTTGG+AGG - chr7_4:57997720-57997739 None:intergenic 20.0%
!!! ATTTTATACAATTTAGTTCC+TGG + chr7_4:57998310-57998329 Msa1165960:intron 20.0%
!!! ATTTGTCAATTTGCTAAATT+CGG + chr7_4:57998460-57998479 Msa1165960:intron 20.0%
!!! TTTTTTATTAAACTTGGGTT+AGG + chr7_4:57999106-57999125 Msa1165960:three_prime_UTR 20.0%
!! ATTGCATGTAATATTTGTAA+TGG + chr7_4:57999168-57999187 Msa1165960:intron 20.0%
!! TTGCATGTAATATTTGTAAT+GGG + chr7_4:57999169-57999188 Msa1165960:intron 20.0%
!! ATTGCATGTAATATTTGTAA+TGG + chr7_4:57999168-57999187 Msa1165960:intron 20.0%
!! TTGCATGTAATATTTGTAAT+GGG + chr7_4:57999169-57999188 Msa1165960:intron 20.0%
! AAACAGTCACAAACAATAAA+TGG + chr7_4:57994322-57994341 Msa1165960:exon 25.0%
! AACTCTATCCAAACTAATTT+CGG + chr7_4:57994422-57994441 Msa1165960:CDS 25.0%
!!! TTTTTGGGTTTTTTTGTGAA+TGG + chr7_4:57994583-57994602 Msa1165960:intron 25.0%
!!! ATCAATCAGATTTTGTTTTC+GGG + chr7_4:57994715-57994734 Msa1165960:CDS 25.0%
!! GTTTTTCTCTCCATAATTAT+TGG + chr7_4:57994851-57994870 Msa1165960:intron 25.0%
! TCAAATAAGTCAATGCAAAT+AGG + chr7_4:57995098-57995117 Msa1165960:intron 25.0%
!! TAATCTAAAACTTGATCTGA+TGG + chr7_4:57995477-57995496 Msa1165960:intron 25.0%
!! TTTTATAAACTGCCAACAAA+TGG + chr7_4:57995587-57995606 Msa1165960:intron 25.0%
! TTTATAAACTGCCAACAAAT+GGG + chr7_4:57995588-57995607 Msa1165960:intron 25.0%
! TGTTAGGACTATAGAATAAA+AGG + chr7_4:57995640-57995659 Msa1165960:intron 25.0%
! ATAGTATTCTCTATTGTGAA+GGG + chr7_4:57995766-57995785 Msa1165960:intron 25.0%
!!! TTTCTTTGGAATTCAATTCT+TGG + chr7_4:57995815-57995834 Msa1165960:intron 25.0%
!!! TTCTTTGGAATTCAATTCTT+GGG + chr7_4:57995816-57995835 Msa1165960:intron 25.0%
! ATAAGATTTCCACTATTGTT+AGG - chr7_4:57995844-57995863 None:intergenic 25.0%
! TTATTGCAGAAAAATAATGG+AGG + chr7_4:57995860-57995879 Msa1165960:intron 25.0%
!! TTATTTATGCAGGATTAGTA+AGG + chr7_4:57996057-57996076 Msa1165960:intron 25.0%
! TTAGTAAGGAGTAATTCAAT+TGG + chr7_4:57996071-57996090 Msa1165960:intron 25.0%
! AAAATACATGTGACAAATTC+AGG - chr7_4:57996204-57996223 None:intergenic 25.0%
!! ATGTATTTTATTACCTTGCT+TGG + chr7_4:57996215-57996234 Msa1165960:intron 25.0%
!! TGTCTATTTTCATTTTCTGA+GGG - chr7_4:57996316-57996335 None:intergenic 25.0%
! GAAAATGAAAATAGACAGTA+AGG + chr7_4:57996319-57996338 Msa1165960:intron 25.0%
! AGATAAGTAATCAACAGAAT+AGG + chr7_4:57996655-57996674 Msa1165960:intron 25.0%
! AAGCATCAATAGTGTAAATA+GGG - chr7_4:57996718-57996737 None:intergenic 25.0%
!!! ATTTTTTGCTTGCAAAATGT+AGG + chr7_4:57996839-57996858 Msa1165960:intron 25.0%
! CAAAATGTAGGTGATTAATA+TGG + chr7_4:57996851-57996870 Msa1165960:intron 25.0%
! TTAACTCATATTGAAACTCT+CGG + chr7_4:57996930-57996949 Msa1165960:CDS 25.0%
!! TATTCTTTTGTGTAGCATTT+GGG + chr7_4:57997378-57997397 Msa1165960:CDS 25.0%
! ATAAGCATATTCCATCAAAT+AGG - chr7_4:57997496-57997515 None:intergenic 25.0%
!! CATTGTAGTTCTATTGTAAT+CGG + chr7_4:57997612-57997631 Msa1165960:intron 25.0%
!!! TTAATTTTCGAAGAAAGCAT+TGG - chr7_4:57997689-57997708 None:intergenic 25.0%
! GTAGTATATGTAATTTAGCA+TGG - chr7_4:57997909-57997928 None:intergenic 25.0%
!!! ATGCTCTGAATTTTATGAAT+TGG + chr7_4:57998057-57998076 Msa1165960:intron 25.0%
! CTTATTCAGTCATAAATACA+TGG + chr7_4:57998529-57998548 Msa1165960:intron 25.0%
!!! TCCAAGATTGGTTTTTTTTA+GGG - chr7_4:57998967-57998986 None:intergenic 25.0%
!!! ATCCAAGATTGGTTTTTTTT+AGG - chr7_4:57998968-57998987 None:intergenic 25.0%
! ATCAAAACTAGTATTAGTAG+GGG - chr7_4:57999045-57999064 None:intergenic 25.0%
! CATCAAAACTAGTATTAGTA+GGG - chr7_4:57999046-57999065 None:intergenic 25.0%
! TGCATGTAATATTTGTAATG+GGG + chr7_4:57999170-57999189 Msa1165960:intron 25.0%
! TGCATGTAATATTTGTAATG+GGG + chr7_4:57999170-57999189 Msa1165960:intron 25.0%
!!! ATCATATTTTTTTGTTGGCG+GGG - chr7_4:57994179-57994198 None:intergenic 30.0%
!!! CATCATATTTTTTTGTTGGC+GGG - chr7_4:57994180-57994199 None:intergenic 30.0%
!!! CCATCATATTTTTTTGTTGG+CGG - chr7_4:57994181-57994200 None:intergenic 30.0%
! TTATTGAGCTTTTGCTTAAC+TGG + chr7_4:57994229-57994248 Msa1165960:five_prime_UTR 30.0%
!! GACTGTTTCTATGAATATGA+AGG - chr7_4:57994310-57994329 None:intergenic 30.0%
ACAATAAATGGAAGCAATTG+CGG + chr7_4:57994334-57994353 Msa1165960:exon 30.0%
AGCTTAAGAAGAAAGTGAAA+AGG - chr7_4:57994484-57994503 None:intergenic 30.0%
GAACAAGAGCTTAGAATATT+GGG - chr7_4:57994751-57994770 None:intergenic 30.0%
AGAACAAGAGCTTAGAATAT+TGG - chr7_4:57994752-57994771 None:intergenic 30.0%
! CTATAAGGCACCAATAATTA+TGG - chr7_4:57994864-57994883 None:intergenic 30.0%
ATAAGCACGTATATGATTAG+TGG - chr7_4:57994919-57994938 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAG+TGG - chr7_4:57995088-57995107 None:intergenic 30.0%
AAATTGAATGTCAAAACTGC+AGG + chr7_4:57995149-57995168 Msa1165960:intron 30.0%
TATCTATCTATCTATCACCA+AGG - chr7_4:57995291-57995310 None:intergenic 30.0%
TGAAATGATTTAGACTGGTA+TGG + chr7_4:57995316-57995335 Msa1165960:intron 30.0%
!!! CATTCTTACGTCAGTTTTTT+AGG - chr7_4:57995548-57995567 None:intergenic 30.0%
AAGTAGTTATACGTTGTTAG+AGG + chr7_4:57995678-57995697 Msa1165960:intron 30.0%
TGTTAGAGGAATATGTGTAT+AGG + chr7_4:57995692-57995711 Msa1165960:intron 30.0%
CATAGTATTCTCTATTGTGA+AGG + chr7_4:57995765-57995784 Msa1165960:intron 30.0%
TAGTATTCTCTATTGTGAAG+GGG + chr7_4:57995767-57995786 Msa1165960:intron 30.0%
AAGTCTCCAACTAACAATAT+CGG - chr7_4:57995945-57995964 None:intergenic 30.0%
!! TGGCTTGTTCAAAAAAAGTA+AGG + chr7_4:57996091-57996110 Msa1165960:intron 30.0%
! CTGTCTATTTTCATTTTCTG+AGG - chr7_4:57996317-57996336 None:intergenic 30.0%
TGTTGAAAATGTGTGATTCT+AGG + chr7_4:57996436-57996455 Msa1165960:intron 30.0%
!! GGTTATTAATTTGCATGTTG+TGG - chr7_4:57996697-57996716 None:intergenic 30.0%
CAAGCATCAATAGTGTAAAT+AGG - chr7_4:57996719-57996738 None:intergenic 30.0%
TCTTCAGTTCAAATATGCAA+AGG - chr7_4:57996795-57996814 None:intergenic 30.0%
TAACTCATATTGAAACTCTC+GGG + chr7_4:57996931-57996950 Msa1165960:CDS 30.0%
GAGGAAATAAAAACCAGTAA+TGG - chr7_4:57996969-57996988 None:intergenic 30.0%
!!! ACTGGTTTTTATTTCCTCAA+TGG + chr7_4:57996971-57996990 Msa1165960:intron 30.0%
TAAACTATATCTAGCCATTG+AGG - chr7_4:57996988-57997007 None:intergenic 30.0%
! GAATTGATGACTTTGAATTC+AGG - chr7_4:57997050-57997069 None:intergenic 30.0%
CATCAATTCATAGTTGCTAA+TGG + chr7_4:57997061-57997080 Msa1165960:intron 30.0%
! CTATTCTTTTGTGTAGCATT+TGG + chr7_4:57997377-57997396 Msa1165960:CDS 30.0%
CTTATTTGTTTGAACCTGAA+AGG + chr7_4:57997511-57997530 Msa1165960:intron 30.0%
ACAATAGAACTACAATGGAT+CGG - chr7_4:57997609-57997628 None:intergenic 30.0%
CGATTACAATAGAACTACAA+TGG - chr7_4:57997614-57997633 None:intergenic 30.0%
AATTCCACAACTTGAAATCA+TGG + chr7_4:57997648-57997667 Msa1165960:intron 30.0%
AAAAATGTAATGTGATGCGT+AGG + chr7_4:57997727-57997746 Msa1165960:intron 30.0%
TGGAGAAAAGAAAGAAAGAA+TGG + chr7_4:57997794-57997813 Msa1165960:intron 30.0%
AGAAAAGAAAGAAAGAATGG+AGG + chr7_4:57997797-57997816 Msa1165960:intron 30.0%
GAAAAGAAAGAAAGAATGGA+GGG + chr7_4:57997798-57997817 Msa1165960:intron 30.0%
AAAAGAAAGAAAGAATGGAG+GGG + chr7_4:57997799-57997818 Msa1165960:intron 30.0%
!! TGCAATTTTGAGGATCAATT+TGG + chr7_4:57998503-57998522 Msa1165960:intron 30.0%
AAGGTAATTGCAATCAGATA+AGG - chr7_4:57998586-57998605 None:intergenic 30.0%
!! AAAGATCAATTTGTTGGCTA+AGG - chr7_4:57998663-57998682 None:intergenic 30.0%
GAAAGGAAAGATCAATTTGT+TGG - chr7_4:57998669-57998688 None:intergenic 30.0%
CAAGAGAAGCTGAAAAATTA+TGG + chr7_4:57998726-57998745 Msa1165960:CDS 30.0%
GCTGAAAAATTATGGTTGAT+CGG + chr7_4:57998734-57998753 Msa1165960:CDS 30.0%
!!! CCAAGATTGGTTTTTTTTAG+GGG - chr7_4:57998966-57998985 None:intergenic 30.0%
ATGAACTTGAAATCCAAGAT+TGG - chr7_4:57998979-57998998 None:intergenic 30.0%
!! ATCTTGGATTTCAAGTTCAT+TGG + chr7_4:57998979-57998998 Msa1165960:CDS 30.0%
! TTTTTCTTGCAAGTTCTTTC+TGG - chr7_4:57999013-57999032 None:intergenic 30.0%
GCATCAAAACTAGTATTAGT+AGG - chr7_4:57999047-57999066 None:intergenic 30.0%
!!! AATACTAGTTTTGATGCCAA+AGG + chr7_4:57999050-57999069 Msa1165960:exon 30.0%
CCGCCAACAAAAAAATATGA+TGG + chr7_4:57994178-57994197 Msa1165960:five_prime_UTR 35.0%
! TGAATATGAAGGTGCAATTG+CGG - chr7_4:57994299-57994318 None:intergenic 35.0%
AATCGTCACCGAAATTAGTT+TGG - chr7_4:57994433-57994452 None:intergenic 35.0%
AAGTGAAAAGGACGTACTTT+GGG - chr7_4:57994472-57994491 None:intergenic 35.0%
AAAGTGAAAAGGACGTACTT+TGG - chr7_4:57994473-57994492 None:intergenic 35.0%
!!! TGGGTTTTTTTGTGAATGGA+AGG + chr7_4:57994587-57994606 Msa1165960:intron 35.0%
!!! GGGTTTTTTTGTGAATGGAA+GGG + chr7_4:57994588-57994607 Msa1165960:intron 35.0%
! TCAATATTATGGAGAGTGCA+AGG + chr7_4:57994678-57994697 Msa1165960:CDS 35.0%
! CAATATTATGGAGAGTGCAA+GGG + chr7_4:57994679-57994698 Msa1165960:CDS 35.0%
CTTATTTCCATAAGCTCTTG+AGG - chr7_4:57995010-57995029 None:intergenic 35.0%
CAGGTTTCTATTATCAATGC+TGG + chr7_4:57995168-57995187 Msa1165960:intron 35.0%
AAGCTGAAGATTTCTTGAGA+TGG - chr7_4:57995195-57995214 None:intergenic 35.0%
TAGTGGAAATTTAGTTGCTG+CGG + chr7_4:57995230-57995249 Msa1165960:CDS 35.0%
!! TCACAGGTTTGCTTTTCTAT+TGG + chr7_4:57995261-57995280 Msa1165960:intron 35.0%
CTGTGTGAAATGATTTAGAC+TGG + chr7_4:57995311-57995330 Msa1165960:intron 35.0%
ACAAACATCCTTTCACCAAA+GGG - chr7_4:57995511-57995530 None:intergenic 35.0%
!!! CTTACGTCAGTTTTTTAGGA+GGG - chr7_4:57995544-57995563 None:intergenic 35.0%
!!! TCTTACGTCAGTTTTTTAGG+AGG - chr7_4:57995545-57995564 None:intergenic 35.0%
AAAAACTGACGTAAGAATGC+AGG + chr7_4:57995549-57995568 Msa1165960:intron 35.0%
TGTAAGAGGAAACAGTTGTT+AGG + chr7_4:57995624-57995643 Msa1165960:intron 35.0%
AGAGGAATATGTGTATAGGT+AGG + chr7_4:57995696-57995715 Msa1165960:intron 35.0%
AGGTAGGACAATACAAATGT+TGG + chr7_4:57995712-57995731 Msa1165960:intron 35.0%
AATATCGGACACAGAATACA+AGG - chr7_4:57995930-57995949 None:intergenic 35.0%
!! TGTCTGTAGCCATTTTCATT+AGG + chr7_4:57995989-57996008 Msa1165960:intron 35.0%
CCATGTTGACCTAATGAAAA+TGG - chr7_4:57996001-57996020 None:intergenic 35.0%
! CCATTTTCATTAGGTCAACA+TGG + chr7_4:57995998-57996017 Msa1165960:intron 35.0%
CATATCATTCTACTCGTACA+AGG - chr7_4:57996154-57996173 None:intergenic 35.0%
CTTGTACGAGTAGAATGATA+TGG + chr7_4:57996152-57996171 Msa1165960:intron 35.0%
TGATATGGAGTGATCAACTT+TGG + chr7_4:57996167-57996186 Msa1165960:intron 35.0%
GACAAATTCAGGATTTGTCA+AGG - chr7_4:57996193-57996212 None:intergenic 35.0%
TTGGCTTCAGTTGAATGATA+TGG + chr7_4:57996234-57996253 Msa1165960:intron 35.0%
TATATATGCTCCAGCTTGAA+GGG - chr7_4:57996378-57996397 None:intergenic 35.0%
ATATATATGCTCCAGCTTGA+AGG - chr7_4:57996379-57996398 None:intergenic 35.0%
! CATTTTATCCCTGAAGAACA+AGG + chr7_4:57996461-57996480 Msa1165960:CDS 35.0%
ATCTGCATATTTGATACCAC+TGG + chr7_4:57996515-57996534 Msa1165960:CDS 35.0%
TTGCAAGAATTGTCAACTGA+AGG - chr7_4:57996598-57996617 None:intergenic 35.0%
TATGGGAACATCAATTGCAA+AGG + chr7_4:57996869-57996888 Msa1165960:CDS 35.0%
!!! ATTGCAAAGGTGGGTTTTTT+TGG + chr7_4:57996882-57996901 Msa1165960:CDS 35.0%
GTACAATTCATCTCCATTAC+TGG + chr7_4:57996953-57996972 Msa1165960:CDS 35.0%
AGTGCATCATAGCTAATGAA+TGG + chr7_4:57997235-57997254 Msa1165960:intron 35.0%
ACACTCTTATGCTCTTAATG+TGG + chr7_4:57997276-57997295 Msa1165960:intron 35.0%
CACTCTTATGCTCTTAATGT+GGG + chr7_4:57997277-57997296 Msa1165960:intron 35.0%
! TGCTCTTAATGTGGGTTATA+TGG + chr7_4:57997285-57997304 Msa1165960:intron 35.0%
! GTACTTTAGCTTCTGAAAGT+TGG + chr7_4:57997443-57997462 Msa1165960:CDS 35.0%
! AGCTTCTGAAAGTTGGAATT+TGG + chr7_4:57997450-57997469 Msa1165960:CDS 35.0%
GTTCTTTCCTTCCTATTTGA+TGG + chr7_4:57997482-57997501 Msa1165960:intron 35.0%
GCATATTCCATCAAATAGGA+AGG - chr7_4:57997492-57997511 None:intergenic 35.0%
TACGAAGTATAACACCTTTC+AGG - chr7_4:57997528-57997547 None:intergenic 35.0%
TATTGTAATCGGCCTTACTT+AGG + chr7_4:57997623-57997642 Msa1165960:intron 35.0%
! TTGTGGAATTAGCCTAAGTA+AGG - chr7_4:57997638-57997657 None:intergenic 35.0%
AAAGAAAGAAAGAATGGAGG+GGG + chr7_4:57997800-57997819 Msa1165960:intron 35.0%
! CTCTTTAAACCTGATCCTTT+TGG + chr7_4:57997841-57997860 Msa1165960:intron 35.0%
CCTCTAACAATAGAAGTCAA+CGG - chr7_4:57998127-57998146 None:intergenic 35.0%
! CAATTTAGTTCCTGGTGATA+TGG + chr7_4:57998318-57998337 Msa1165960:intron 35.0%
CATTTAATGTGCCACATCAT+AGG + chr7_4:57998376-57998395 Msa1165960:intron 35.0%
! GATCCATACTTGCAATTTTG+AGG + chr7_4:57998493-57998512 Msa1165960:intron 35.0%
GATCCTCAAAATTGCAAGTA+TGG - chr7_4:57998499-57998518 None:intergenic 35.0%
CAGTCATAAATACATGGCAT+TGG + chr7_4:57998535-57998554 Msa1165960:intron 35.0%
ATCTGATTGCAATTACCTTG+TGG + chr7_4:57998587-57998606 Msa1165960:intron 35.0%
AAGCTTGTATACTGCTCTAT+TGG + chr7_4:57998615-57998634 Msa1165960:intron 35.0%
AGCTTGTATACTGCTCTATT+GGG + chr7_4:57998616-57998635 Msa1165960:intron 35.0%
! GATCTTTCCTTTCTTTTTGC+AGG + chr7_4:57998676-57998695 Msa1165960:intron 35.0%
TAGTCAACCTGCAAAAAGAA+AGG - chr7_4:57998686-57998705 None:intergenic 35.0%
GAAAAATTATGGTTGATCGG+CGG + chr7_4:57998737-57998756 Msa1165960:CDS 35.0%
GTCGTTTCACTGTAATTTAC+AGG - chr7_4:57998791-57998810 None:intergenic 35.0%
TACAGTGAAACGACAACAAT+TGG + chr7_4:57998797-57998816 Msa1165960:CDS 35.0%
CACTTCTAACAACATCTGTA+TGG - chr7_4:57998850-57998869 None:intergenic 35.0%
! GTTCATAGTTCAGGCATTTT+TGG + chr7_4:57998887-57998906 Msa1165960:CDS 35.0%
!! ATAGTTCAGGCATTTTTGGA+TGG + chr7_4:57998891-57998910 Msa1165960:CDS 35.0%
CCCCTAAAAAAAACCAATCT+TGG + chr7_4:57998963-57998982 Msa1165960:CDS 35.0%
! TAAACTTGGGTTAGGATTGA+TGG + chr7_4:57999114-57999133 Msa1165960:three_prime_UTR 35.0%
!!! GGTTAGGATTGATGGATTTT+GGG + chr7_4:57999122-57999141 Msa1165960:three_prime_UTR 35.0%
ATTATGTATCACTAGCGTCA+AGG + chr7_4:57999316-57999335 Msa1165960:three_prime_UTR 35.0%
!! GTGGAAGAAAAGGGTTTTAG+GGG - chr7_4:57994277-57994296 None:intergenic 40.0%
! GGTGGAAGAAAAGGGTTTTA+GGG - chr7_4:57994278-57994297 None:intergenic 40.0%
CGTTTAACGTTGTTGGGTAT+GGG - chr7_4:57994389-57994408 None:intergenic 40.0%
TTGTGAATGGAAGGGATGAT+TGG + chr7_4:57994596-57994615 Msa1165960:intron 40.0%
AAGGGATGATTGGAGTTCAA+TGG + chr7_4:57994606-57994625 Msa1165960:intron 40.0%
AGTGAAACTGTATTCACCAG+TGG + chr7_4:57994651-57994670 Msa1165960:CDS 40.0%
AAACTGTATTCACCAGTGGT+GGG + chr7_4:57994655-57994674 Msa1165960:CDS 40.0%
CTAAGCTCTTGTTCTTCAGA+TGG + chr7_4:57994757-57994776 Msa1165960:CDS 40.0%
GTTCTTCAGATGGTACTATC+AGG + chr7_4:57994767-57994786 Msa1165960:CDS 40.0%
AGATGGTACTATCAGGACTT+GGG + chr7_4:57994774-57994793 Msa1165960:CDS 40.0%
GGACACAAGAACATTTCAAC+AGG + chr7_4:57994795-57994814 Msa1165960:CDS 40.0%
! CTGAGGATAGCTTGTGAAAA+CGG - chr7_4:57994986-57995005 None:intergenic 40.0%
TCAAGCAGCAAAGAGATCAT+GGG - chr7_4:57995124-57995143 None:intergenic 40.0%
GAAATCTTCAGCTTCTCCAT+TGG + chr7_4:57995201-57995220 Msa1165960:CDS 40.0%
GCAGCAACTAAATTTCCACT+AGG - chr7_4:57995231-57995250 None:intergenic 40.0%
AGTGGAAATTTAGTTGCTGC+GGG + chr7_4:57995231-57995250 Msa1165960:CDS 40.0%
!! CAGGTTTGCTTTTCTATTGG+AGG + chr7_4:57995264-57995283 Msa1165960:intron 40.0%
CTGTGTTGTGTAATTATCCC+AGG + chr7_4:57995347-57995366 Msa1165960:intron 40.0%
AATTATCCCAGGTACTCTTG+TGG + chr7_4:57995358-57995377 Msa1165960:intron 40.0%
ATTATCCCAGGTACTCTTGT+GGG + chr7_4:57995359-57995378 Msa1165960:intron 40.0%
ATGCCTAGAAGATTCTCATG+TGG + chr7_4:57995407-57995426 Msa1165960:CDS 40.0%
CATCCACATGAGAATCTTCT+AGG - chr7_4:57995413-57995432 None:intergenic 40.0%
AGTTGTAACCCTTTGGTGAA+AGG + chr7_4:57995500-57995519 Msa1165960:intron 40.0%
GACAAACATCCTTTCACCAA+AGG - chr7_4:57995512-57995531 None:intergenic 40.0%
TGGTGAAAGGATGTTTGTCT+TGG + chr7_4:57995513-57995532 Msa1165960:intron 40.0%
TCTTGGGTTCCTAACAATAG+TGG + chr7_4:57995832-57995851 Msa1165960:intron 40.0%
CTGTGTCCGATATTGTTAGT+TGG + chr7_4:57995936-57995955 Msa1165960:intron 40.0%
AAAATGGCTACAGACAGAAC+CGG - chr7_4:57995985-57996004 None:intergenic 40.0%
CATTAGGTCAACATGGCTTT+AGG + chr7_4:57996005-57996024 Msa1165960:intron 40.0%
GCATAAATAAGCAGTTTGCG+TGG - chr7_4:57996047-57996066 None:intergenic 40.0%
CGCAAACTGCTTATTTATGC+AGG + chr7_4:57996047-57996066 Msa1165960:intron 40.0%
AAAAAAACTCCCCTTCAAGC+TGG + chr7_4:57996365-57996384 Msa1165960:intron 40.0%
ATATATGCTCCAGCTTGAAG+GGG - chr7_4:57996377-57996396 None:intergenic 40.0%
CTCATTTCTGCTTCAGTTGA+TGG + chr7_4:57996488-57996507 Msa1165960:CDS 40.0%
ATCGTCGTTAATATCTCCAG+TGG - chr7_4:57996534-57996553 None:intergenic 40.0%
GGAACATCAATTGCAAAGGT+GGG + chr7_4:57996873-57996892 Msa1165960:CDS 40.0%
GAGAGAGTTATCAGAAGCTT+TGG + chr7_4:57996904-57996923 Msa1165960:CDS 40.0%
! CTCTTCCTCTCTTTTTGCTA+TGG + chr7_4:57997327-57997346 Msa1165960:CDS 40.0%
ATCAGCCATAGCAAAAAGAG+AGG - chr7_4:57997335-57997354 None:intergenic 40.0%
!! TTTTGTGTAGCATTTGGGAC+TGG + chr7_4:57997383-57997402 Msa1165960:CDS 40.0%
TTCTTTGAACTCTGTAGTGG+AGG - chr7_4:57997582-57997601 None:intergenic 40.0%
TCCACTACAGAGTTCAAAGA+AGG + chr7_4:57997581-57997600 Msa1165960:intron 40.0%
TCCTTCTTTGAACTCTGTAG+TGG - chr7_4:57997585-57997604 None:intergenic 40.0%
!! GAAGCCATGATTTCAAGTTG+TGG - chr7_4:57997655-57997674 None:intergenic 40.0%
TTGCTTGTCATGAGACAGAA+TGG + chr7_4:57997774-57997793 Msa1165960:intron 40.0%
AAGAAAGAAAGAATGGAGGG+GGG + chr7_4:57997801-57997820 Msa1165960:intron 40.0%
! CTGAAAAGCACACAAAGCAA+AGG - chr7_4:57997886-57997905 None:intergenic 40.0%
CTACTTCATATTGAAGTGCG+TGG + chr7_4:57997925-57997944 Msa1165960:intron 40.0%
! CTGGAATTTTCGTCAAAGCT+TGG - chr7_4:57997965-57997984 None:intergenic 40.0%
! CAAGCTTTGACGAAAATTCC+AGG + chr7_4:57997963-57997982 Msa1165960:intron 40.0%
TTTGACGAAAATTCCAGGAG+AGG + chr7_4:57997968-57997987 Msa1165960:intron 40.0%
! GTCAACGGAGTGACTATTTT+CGG - chr7_4:57998112-57998131 None:intergenic 40.0%
!! CCGTTGACTTCTATTGTTAG+AGG + chr7_4:57998124-57998143 Msa1165960:intron 40.0%
TGACACATTAACTGAACACG+TGG + chr7_4:57998155-57998174 Msa1165960:intron 40.0%
ACATTGAAGTGAGATCCAAG+TGG - chr7_4:57998185-57998204 None:intergenic 40.0%
GTTGATGTAAGATCCACGTA+GGG + chr7_4:57998342-57998361 Msa1165960:intron 40.0%
TTGATGTAAGATCCACGTAG+GGG + chr7_4:57998343-57998362 Msa1165960:intron 40.0%
CCATCTGTTAACACTGATGT+CGG - chr7_4:57998404-57998423 None:intergenic 40.0%
! ATACAAGCTTTTGCTCCACA+AGG - chr7_4:57998605-57998624 None:intergenic 40.0%
AGTGAAACGACAACAATTGG+AGG + chr7_4:57998800-57998819 Msa1165960:CDS 40.0%
GAACTATGAACTCTGGACAT+AGG - chr7_4:57998878-57998897 None:intergenic 40.0%
ATGTCCAGAGTTCATAGTTC+AGG + chr7_4:57998878-57998897 Msa1165960:CDS 40.0%
AATGCCTGAACTATGAACTC+TGG - chr7_4:57998885-57998904 None:intergenic 40.0%
AAGATGGTAGGCTATGTTGT+TGG + chr7_4:57998924-57998943 Msa1165960:CDS 40.0%
ACTAGTATTAGTAGGGGTGA+TGG - chr7_4:57999039-57999058 None:intergenic 40.0%
!!! GGGTTAGGATTGATGGATTT+TGG + chr7_4:57999121-57999140 Msa1165960:three_prime_UTR 40.0%
! CGGTGGAAGAAAAGGGTTTT+AGG - chr7_4:57994279-57994298 None:intergenic 45.0%
GCAATTGCGGTGGAAGAAAA+GGG - chr7_4:57994286-57994305 None:intergenic 45.0%
TGCAATTGCGGTGGAAGAAA+AGG - chr7_4:57994287-57994306 None:intergenic 45.0%
! ATATGAAGGTGCAATTGCGG+TGG - chr7_4:57994296-57994315 None:intergenic 45.0%
ACGTTGTTGGGTATGGGAAA+AGG - chr7_4:57994383-57994402 None:intergenic 45.0%
GCGTTTAACGTTGTTGGGTA+TGG - chr7_4:57994390-57994409 None:intergenic 45.0%
! CCGAAGCGTTTAACGTTGTT+GGG - chr7_4:57994395-57994414 None:intergenic 45.0%
CCCAACAACGTTAAACGCTT+CGG + chr7_4:57994392-57994411 Msa1165960:CDS 45.0%
! ACCGAAGCGTTTAACGTTGT+TGG - chr7_4:57994396-57994415 None:intergenic 45.0%
!! GGACGTACTTTGGGATGATT+TGG - chr7_4:57994463-57994482 None:intergenic 45.0%
GGATGATTGGAGTTCAATGG+CGG + chr7_4:57994609-57994628 Msa1165960:CDS 45.0%
GAAACTGTATTCACCAGTGG+TGG + chr7_4:57994654-57994673 Msa1165960:CDS 45.0%
CCATAATATTGACCCACCAC+TGG - chr7_4:57994670-57994689 None:intergenic 45.0%
!! CCAGTGGTGGGTCAATATTA+TGG + chr7_4:57994667-57994686 Msa1165960:CDS 45.0%
CAGATGGTACTATCAGGACT+TGG + chr7_4:57994773-57994792 Msa1165960:CDS 45.0%
CTCAAGCAGCAAAGAGATCA+TGG - chr7_4:57995125-57995144 None:intergenic 45.0%
ATCTTCAGCTTCTCCATTGG+AGG + chr7_4:57995204-57995223 Msa1165960:CDS 45.0%
ATTTCCACTAGGTCCTCCAA+TGG - chr7_4:57995220-57995239 None:intergenic 45.0%
! GCTTTTCTATTGGAGGACCT+TGG + chr7_4:57995271-57995290 Msa1165960:intron 45.0%
TCATGTGGATGATGTCACTC+AGG + chr7_4:57995422-57995441 Msa1165960:CDS 45.0%
CTGATGGAGTTGTAACCCTT+TGG + chr7_4:57995493-57995512 Msa1165960:intron 45.0%
! AAACTGCCAACAAATGGGCT+CGG + chr7_4:57995593-57995612 Msa1165960:intron 45.0%
AATATCCCGAGCCCATTTGT+TGG - chr7_4:57995602-57995621 None:intergenic 45.0%
! GCTCGGGATATTTCTGTAAG+AGG + chr7_4:57995610-57995629 Msa1165960:intron 45.0%
!!! TTCGAGTGACTGGCTTTTTC+CGG + chr7_4:57995963-57995982 Msa1165960:intron 45.0%
CATTCAACTGAAGCCAAGCA+AGG - chr7_4:57996231-57996250 None:intergenic 45.0%
! TGAGCTTGCCTTGTTCTTCA+GGG - chr7_4:57996472-57996491 None:intergenic 45.0%
! ATGAGCTTGCCTTGTTCTTC+AGG - chr7_4:57996473-57996492 None:intergenic 45.0%
! CGACGATGATCATCTAGAGT+CGG + chr7_4:57996547-57996566 Msa1165960:CDS 45.0%
GGGAACATCAATTGCAAAGG+TGG + chr7_4:57996872-57996891 Msa1165960:CDS 45.0%
! AGCATTTGGGACTGGAAAGA+AGG + chr7_4:57997391-57997410 Msa1165960:CDS 45.0%
! TTGAACTCTGTAGTGGAGGT+TGG - chr7_4:57997578-57997597 None:intergenic 45.0%
AGGAAAGCTCCAAAAGGATC+AGG - chr7_4:57997853-57997872 None:intergenic 45.0%
CATATTGAAGTGCGTGGAGT+TGG + chr7_4:57997931-57997950 Msa1165960:intron 45.0%
AAGTCTTCGGATCTCAAGAG+TGG - chr7_4:57998269-57998288 None:intergenic 45.0%
TACATCAACGCCATATCACC+AGG - chr7_4:57998331-57998350 None:intergenic 45.0%
CGTTGATGTAAGATCCACGT+AGG + chr7_4:57998341-57998360 Msa1165960:intron 45.0%
TGATGTAAGATCCACGTAGG+GGG + chr7_4:57998344-57998363 Msa1165960:intron 45.0%
TGATGTCGGAACCTATGATG+TGG - chr7_4:57998390-57998409 None:intergenic 45.0%
CCGACATCAGTGTTAACAGA+TGG + chr7_4:57998401-57998420 Msa1165960:intron 45.0%
!! ATGGCATTGGTTGAACAAGC+TGG + chr7_4:57998548-57998567 Msa1165960:intron 45.0%
!! TGGCATTGGTTGAACAAGCT+GGG + chr7_4:57998549-57998568 Msa1165960:intron 45.0%
!! TCAGGCATTTTTGGATGGAC+AGG + chr7_4:57998896-57998915 Msa1165960:CDS 45.0%
!! GCATTTTTGGATGGACAGGT+GGG + chr7_4:57998900-57998919 Msa1165960:CDS 45.0%
!! CATTTTTGGATGGACAGGTG+GGG + chr7_4:57998901-57998920 Msa1165960:CDS 45.0%
!!! TTCTTTTTTAAAATATAAAA+GGG - chr7_4:57999210-57999229 None:intergenic 5.0%
!!! TTTCTTTTTTAAAATATAAA+AGG - chr7_4:57999211-57999230 None:intergenic 5.0%
!!! TTCTTTTTTAAAATATAAAA+GGG - chr7_4:57999210-57999229 None:intergenic 5.0%
!!! TTTCTTTTTTAAAATATAAA+AGG - chr7_4:57999211-57999230 None:intergenic 5.0%
AATGGAAGCAATTGCGGCCA+TGG + chr7_4:57994340-57994359 Msa1165960:exon 50.0%
TCGTTGTTCCTCGACATCCA+TGG - chr7_4:57994360-57994379 None:intergenic 50.0%
CCATAAGCTCTTGAGGTCTG+AGG - chr7_4:57995003-57995022 None:intergenic 50.0%
CCTCAGACCTCAAGAGCTTA+TGG + chr7_4:57995000-57995019 Msa1165960:intron 50.0%
TTCTCCATTGGAGGACCTAG+TGG + chr7_4:57995213-57995232 Msa1165960:CDS 50.0%
!! CCAATCCCACAAGAGTACCT+GGG - chr7_4:57995367-57995386 None:intergenic 50.0%
!! TCCAATCCCACAAGAGTACC+TGG - chr7_4:57995368-57995387 None:intergenic 50.0%
! AACTGCCAACAAATGGGCTC+GGG + chr7_4:57995594-57995613 Msa1165960:intron 50.0%
AGTTGGAGACTTCGAGTGAC+TGG + chr7_4:57995953-57995972 Msa1165960:intron 50.0%
!! TGTAGCACCGACACTTCTGA+TGG + chr7_4:57997088-57997107 Msa1165960:intron 50.0%
! ACGCCTTCCATCAGAAGTGT+CGG - chr7_4:57997098-57997117 None:intergenic 50.0%
TGACACATGCACGTTGACAC+CGG - chr7_4:57997198-57997217 None:intergenic 50.0%
CCTGGAAGGAAAGCTCCAAA+AGG - chr7_4:57997859-57997878 None:intergenic 50.0%
!!! CCTTTTGGAGCTTTCCTTCC+AGG + chr7_4:57997856-57997875 Msa1165960:intron 50.0%
AAAGCAAAGGCTCTCCTGGA+AGG - chr7_4:57997873-57997892 None:intergenic 50.0%
ACACAAAGCAAAGGCTCTCC+TGG - chr7_4:57997877-57997896 None:intergenic 50.0%
! ATACAAGCTCTAGCCTCTCC+TGG - chr7_4:57997984-57998003 None:intergenic 50.0%
!! CGGTGCTGCGTTATTATCTC+AGG - chr7_4:57998092-57998111 None:intergenic 50.0%
TGAACACGTGGTCTTCCACT+TGG + chr7_4:57998167-57998186 Msa1165960:intron 50.0%
TGAACATGTAACCCCCTACG+TGG - chr7_4:57998358-57998377 None:intergenic 50.0%
GGCACAAATGCGGGTACTTT+GGG + chr7_4:57998758-57998777 Msa1165960:CDS 50.0%
GGTGCAGAAGCAATTCTCGA+AGG + chr7_4:57998821-57998840 Msa1165960:CDS 50.0%
GCAGAAGCAATTCTCGAAGG+TGG + chr7_4:57998824-57998843 Msa1165960:CDS 50.0%
!! GGCATTTTTGGATGGACAGG+TGG + chr7_4:57998899-57998918 Msa1165960:CDS 50.0%
AATTGCGGCCATGGATGTCG+AGG + chr7_4:57994349-57994368 Msa1165960:CDS 55.0%
! TGCTGCGGGTTGTGATTCAC+AGG + chr7_4:57995245-57995264 Msa1165960:CDS 55.0%
CCCAGGTACTCTTGTGGGAT+TGG + chr7_4:57995364-57995383 Msa1165960:intron 55.0%
! GCACCGACACTTCTGATGGA+AGG + chr7_4:57997092-57997111 Msa1165960:intron 55.0%
! CTTCTGATGGAAGGCGTGTC+CGG + chr7_4:57997101-57997120 Msa1165960:intron 55.0%
CACTGACACGTGTCGAACAC+CGG - chr7_4:57997123-57997142 None:intergenic 55.0%
TGTTCGACACGTGTCAGTGC+CGG + chr7_4:57997124-57997143 Msa1165960:intron 55.0%
GTCAGTGTCGTGTCAGTGAC+CGG - chr7_4:57997146-57997165 None:intergenic 55.0%
GTTGATCGGCGGCACAAATG+CGG + chr7_4:57998748-57998767 Msa1165960:CDS 55.0%
TTGATCGGCGGCACAAATGC+GGG + chr7_4:57998749-57998768 Msa1165960:CDS 55.0%
CGGCACAAATGCGGGTACTT+TGG + chr7_4:57998757-57998776 Msa1165960:CDS 55.0%
GGATGGACAGGTGGGGAAGA+TGG + chr7_4:57998908-57998927 Msa1165960:CDS 60.0%
GGACAGGTGGGGAAGATGGT+AGG + chr7_4:57998912-57998931 Msa1165960:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 57994171 57999359 57994171 ID=Msa1165960;Name=Msa1165960
chr7_4 mRNA 57994171 57999359 57994171 ID=Msa1165960-mRNA-1;Parent=Msa1165960;Name=Msa1165960-mRNA-1;_AED=0.18;_eAED=0.18;_QI=170|0.87|0.77|1|0.87|0.77|9|240|415
chr7_4 exon 57994171 57994474 57994171 ID=Msa1165960-mRNA-1:exon:17657;Parent=Msa1165960-mRNA-1
chr7_4 exon 57994609 57994816 57994609 ID=Msa1165960-mRNA-1:exon:17658;Parent=Msa1165960-mRNA-1
chr7_4 exon 57995171 57995266 57995171 ID=Msa1165960-mRNA-1:exon:17659;Parent=Msa1165960-mRNA-1
chr7_4 exon 57995369 57995443 57995369 ID=Msa1165960-mRNA-1:exon:17660;Parent=Msa1165960-mRNA-1
chr7_4 exon 57996458 57996568 57996458 ID=Msa1165960-mRNA-1:exon:17661;Parent=Msa1165960-mRNA-1
chr7_4 exon 57996861 57996974 57996861 ID=Msa1165960-mRNA-1:exon:17662;Parent=Msa1165960-mRNA-1
chr7_4 exon 57997322 57997477 57997322 ID=Msa1165960-mRNA-1:exon:17663;Parent=Msa1165960-mRNA-1
chr7_4 exon 57998698 57999174 57998698 ID=Msa1165960-mRNA-1:exon:17664;Parent=Msa1165960-mRNA-1
chr7_4 exon 57999243 57999359 57999243 ID=Msa1165960-mRNA-1:exon:17665;Parent=Msa1165960-mRNA-1
chr7_4 five_prime_UTR 57994171 57994340 57994171 ID=Msa1165960-mRNA-1:five_prime_utr;Parent=Msa1165960-mRNA-1
chr7_4 CDS 57994341 57994474 57994341 ID=Msa1165960-mRNA-1:cds;Parent=Msa1165960-mRNA-1
chr7_4 CDS 57994609 57994816 57994609 ID=Msa1165960-mRNA-1:cds;Parent=Msa1165960-mRNA-1
chr7_4 CDS 57995171 57995266 57995171 ID=Msa1165960-mRNA-1:cds;Parent=Msa1165960-mRNA-1
chr7_4 CDS 57995369 57995443 57995369 ID=Msa1165960-mRNA-1:cds;Parent=Msa1165960-mRNA-1
chr7_4 CDS 57996458 57996568 57996458 ID=Msa1165960-mRNA-1:cds;Parent=Msa1165960-mRNA-1
chr7_4 CDS 57996861 57996974 57996861 ID=Msa1165960-mRNA-1:cds;Parent=Msa1165960-mRNA-1
chr7_4 CDS 57997322 57997477 57997322 ID=Msa1165960-mRNA-1:cds;Parent=Msa1165960-mRNA-1
chr7_4 CDS 57998698 57999051 57998698 ID=Msa1165960-mRNA-1:cds;Parent=Msa1165960-mRNA-1
chr7_4 three_prime_UTR 57999052 57999174 57999052 ID=Msa1165960-mRNA-1:three_prime_utr;Parent=Msa1165960-mRNA-1
chr7_4 three_prime_UTR 57999243 57999359 57999243 ID=Msa1165960-mRNA-1:three_prime_utr;Parent=Msa1165960-mRNA-1
Gene Sequence

>Msa1165960

ATGGAAGCAATTGCGGCCATGGATGTCGAGGAACAACGACCTTTTCCCATACCCAACAACGTTAAACGCTTCGGTCTTAAAAACTCTATCCAAACTAATTTCGGTGACGATTATGTTTTCCAAATCATCCCAAAGGATGATTGGAGTTCAATGGCGGTTTCACTTTCGACGAACGCAGTGAAACTGTATTCACCAGTGGTGGGTCAATATTATGGAGAGTGCAAGGGTCACACTGCAACTATCAATCAGATTTTGTTTTCGGGTCATTCTAATCCCAATATTCTAAGCTCTTGTTCTTCAGATGGTACTATCAGGACTTGGGACACAAGAACATTTCAACAGGTTTCTATTATCAATGCTGGTCCATCTCAAGAAATCTTCAGCTTCTCCATTGGAGGACCTAGTGGAAATTTAGTTGCTGCGGGTTGTGATTCACAGGTACTCTTGTGGGATTGGAGAAATAACAAGCAAATTGCATGCCTAGAAGATTCTCATGTGGATGATGTCACTCAGGTTCATTTTATCCCTGAAGAACAAGGCAAGCTCATTTCTGCTTCAGTTGATGGATTGATCTGCATATTTGATACCACTGGAGATATTAACGACGATGATCATCTAGAGTCGGTGATTAATATGGGAACATCAATTGCAAAGGTGGGTTTTTTTGGAGAGAGTTATCAGAAGCTTTGGTGTTTAACTCATATTGAAACTCTCGGGTACAATTCATCTCCATTACTGATTTACTCTTCCTCTCTTTTTGCTATGGCTGATTCTTATATTTCATTGATTCGTTCTATTCTTTTGTGTAGCATTTGGGACTGGAAAGAAGGTAGAAATGAAGTAAACTTCTCAGACACGCGTACTTTAGCTTCTGAAAGTTGGAATTTGGATCATGTTGACTACTTCGTTGATTGTCACTACTCAAGAGAAGCTGAAAAATTATGGTTGATCGGCGGCACAAATGCGGGTACTTTGGGTTTCTTTCCTGTAAATTACAGTGAAACGACAACAATTGGAGGTGCAGAAGCAATTCTCGAAGGTGGCCATACAGATGTTGTTAGAAGTGTTCTACCTATGTCCAGAGTTCATAGTTCAGGCATTTTTGGATGGACAGGTGGGGAAGATGGTAGGCTATGTTGTTGGCTGTCTGATGATGATTCCCCTAAAAAAAACCAATCTTGGATTTCAAGTTCATTGGTTATGAAACCAGAAAGAACTTGCAAGAAAAATCGCCATCACCCCTACTAA

Protein sequence

>Msa1165960

MEAIAAMDVEEQRPFPIPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWSSMAVSLSTNAVKLYSPVVGQYYGECKGHTATINQILFSGHSNPNILSSCSSDGTIRTWDTRTFQQVSIINAGPSQEIFSFSIGGPSGNLVAAGCDSQVLLWDWRNNKQIACLEDSHVDDVTQVHFIPEEQGKLISASVDGLICIFDTTGDINDDDHLESVINMGTSIAKVGFFGESYQKLWCLTHIETLGYNSSPLLIYSSSLFAMADSYISLIRSILLCSIWDWKEGRNEVNFSDTRTLASESWNLDHVDYFVDCHYSREAEKLWLIGGTNAGTLGFFPVNYSETTTIGGAEAILEGGHTDVVRSVLPMSRVHSSGIFGWTGGEDGRLCCWLSDDDSPKKNQSWISSSLVMKPERTCKKNRHHPY*