AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0581130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581130 MtrunA17_Chr7g0269261 91.198 409 5 1 7 415 1 378 0.0 765
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581130 AT2G47790.1 64.250 400 107 4 20 415 25 392 0.0 521

Find 98 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTTAGGATTGATGGATTT+TGG 0.136354 4_1:+86468980 Msa0581130:three_prime_UTR
AGCTTCTGAAAGTTGGAATT+TGG 0.165604 4_1:+86467309 Msa0581130:CDS
CTCATTTCTGCTTCAGTTGA+TGG 0.185036 4_1:+86466347 Msa0581130:CDS
CAAAATGTAGGTGATTAATA+TGG 0.195603 4_1:+86466710 Msa0581130:intron
ATGAGCTTGCCTTGTTCTTC+AGG 0.238064 4_1:-86466329 None:intergenic
GTACAATTCATCTCCATTAC+TGG 0.253066 4_1:+86466812 Msa0581130:CDS
GTCGTTTCACTGTAATTTAC+AGG 0.258641 4_1:-86468647 None:intergenic
AAACAGTCACAAACAATAAA+TGG 0.263729 4_1:+86464181 Msa0581130:exon
GGACGTACTTTGGGATGATT+TGG 0.280115 4_1:-86464319 None:intergenic
AACTCTATCCAAACTAATTT+CGG 0.290124 4_1:+86464281 Msa0581130:CDS
GAACAAGAGCTTAGAATATT+GGG 0.292886 4_1:-86464607 None:intergenic
CATCCACATGAGAATCTTCT+AGG 0.294934 4_1:-86465269 None:intergenic
TAAACTTGGGTTAGGATTGA+TGG 0.304510 4_1:+86468973 Msa0581130:three_prime_UTR
GCGTTTAACGTTGTTGGGTA+TGG 0.309545 4_1:-86464246 None:intergenic
TTGCATGTAATATTTGTAAT+GGG 0.313413 4_1:+86469096 Msa0581130:intron
AGAACAAGAGCTTAGAATAT+TGG 0.313825 4_1:-86464608 None:intergenic
CGGCACAAATGCGGGTACTT+TGG 0.324412 4_1:+86468616 Msa0581130:CDS
GGCACAAATGCGGGTACTTT+GGG 0.345345 4_1:+86468617 Msa0581130:CDS
AATCGTCACCGAAATTAGTT+TGG 0.355363 4_1:-86464289 None:intergenic
ATCTTGGATTTCAAGTTCAT+TGG 0.361402 4_1:+86468838 Msa0581130:CDS
TACAGTGAAACGACAACAAT+TGG 0.373503 4_1:+86468656 Msa0581130:CDS
ACCGAAGCGTTTAACGTTGT+TGG 0.380689 4_1:-86464252 None:intergenic
GCATCAAAACTAGTATTAGT+AGG 0.387663 4_1:-86468903 None:intergenic
GTTCTTCAGATGGTACTATC+AGG 0.389104 4_1:+86464626 Msa0581130:CDS
GAGAGAGTTATCAGAAGCTT+TGG 0.390315 4_1:+86466763 Msa0581130:CDS
CCCAGGTACTCTTGTGGGAT+TGG 0.391389 4_1:+86465223 Msa0581130:intron
CCAGTGGTGGGTCAATATTA+TGG 0.397482 4_1:+86464526 Msa0581130:CDS
ATTGCATGTAATATTTGTAA+TGG 0.405931 4_1:+86469095 Msa0581130:intron
GGATGGACAGGTGGGGAAGA+TGG 0.408251 4_1:+86468767 Msa0581130:CDS
ATGAACTTGAAATCCAAGAT+TGG 0.410585 4_1:-86468835 None:intergenic
CCGAAGCGTTTAACGTTGTT+GGG 0.411456 4_1:-86464251 None:intergenic
CGTTTAACGTTGTTGGGTAT+GGG 0.432856 4_1:-86464245 None:intergenic
TGCAATTGCGGTGGAAGAAA+AGG 0.434740 4_1:-86464143 None:intergenic
ATGTCCAGAGTTCATAGTTC+AGG 0.435022 4_1:+86468737 Msa0581130:CDS
GTACTTTAGCTTCTGAAAGT+TGG 0.459371 4_1:+86467302 Msa0581130:CDS
GAAATCTTCAGCTTCTCCAT+TGG 0.460403 4_1:+86465060 Msa0581130:CDS
GGACACAAGAACATTTCAAC+AGG 0.464750 4_1:+86464654 Msa0581130:CDS
ATCTTCAGCTTCTCCATTGG+AGG 0.466757 4_1:+86465063 Msa0581130:CDS
ACGTTGTTGGGTATGGGAAA+AGG 0.467623 4_1:-86464239 None:intergenic
CATCAAAACTAGTATTAGTA+GGG 0.468071 4_1:-86468902 None:intergenic
TGAGCTTGCCTTGTTCTTCA+GGG 0.472636 4_1:-86466328 None:intergenic
TTGTGAATGGAAGGGATGAT+TGG 0.474743 4_1:+86464455 Msa0581130:intron
ATCTGCATATTTGATACCAC+TGG 0.474964 4_1:+86466374 Msa0581130:CDS
AATGGAAGCAATTGCGGCCA+TGG 0.476431 4_1:+86464199 Msa0581130:exon
CTAAGCTCTTGTTCTTCAGA+TGG 0.477643 4_1:+86464616 Msa0581130:CDS
ATTATCCCAGGTACTCTTGT+GGG 0.479200 4_1:+86465218 Msa0581130:intron
CAGATGGTACTATCAGGACT+TGG 0.481372 4_1:+86464632 Msa0581130:CDS
CAGGTTTCTATTATCAATGC+TGG 0.488118 4_1:+86465027 Msa0581130:intron
AAAATGTAGGTGATTAATAT+GGG 0.496513 4_1:+86466711 Msa0581130:intron
TGCTGCGGGTTGTGATTCAC+AGG 0.496992 4_1:+86465104 Msa0581130:CDS
CACTTCTAACAACATCTGTA+TGG 0.503113 4_1:-86468706 None:intergenic
TTGATCGGCGGCACAAATGC+GGG 0.512819 4_1:+86468608 Msa0581130:CDS
AAGATGGTAGGCTATGTTGT+TGG 0.515760 4_1:+86468783 Msa0581130:CDS
CCCAACAACGTTAAACGCTT+CGG 0.516028 4_1:+86464251 Msa0581130:CDS
TTAACTCATATTGAAACTCT+CGG 0.520375 4_1:+86466789 Msa0581130:CDS
AATGCCTGAACTATGAACTC+TGG 0.526089 4_1:-86468741 None:intergenic
GCAATTGCGGTGGAAGAAAA+GGG 0.528056 4_1:-86464142 None:intergenic
CCATAATATTGACCCACCAC+TGG 0.537095 4_1:-86464526 None:intergenic
TAACTCATATTGAAACTCTC+GGG 0.537523 4_1:+86466790 Msa0581130:CDS
GGGAACATCAATTGCAAAGG+TGG 0.538474 4_1:+86466731 Msa0581130:CDS
GGACAGGTGGGGAAGATGGT+AGG 0.540295 4_1:+86468771 Msa0581130:CDS
AGTGGAAATTTAGTTGCTGC+GGG 0.541232 4_1:+86465090 Msa0581130:CDS
GAAACTGTATTCACCAGTGG+TGG 0.542400 4_1:+86464513 Msa0581130:CDS
ACAATAAATGGAAGCAATTG+CGG 0.543794 4_1:+86464193 Msa0581130:exon
AGCATTTGGGACTGGAAAGA+AGG 0.546349 4_1:+86467250 Msa0581130:CDS
AAGCTGAAGATTTCTTGAGA+TGG 0.552407 4_1:-86465051 None:intergenic
AAGGGATGATTGGAGTTCAA+TGG 0.555515 4_1:+86464465 Msa0581130:intron
TCAATATTATGGAGAGTGCA+AGG 0.560776 4_1:+86464537 Msa0581130:CDS
ACTAGTATTAGTAGGGGTGA+TGG 0.565765 4_1:-86468895 None:intergenic
GACTGTTTCTATGAATATGA+AGG 0.571440 4_1:-86464166 None:intergenic
TGCATGTAATATTTGTAATG+GGG 0.575782 4_1:+86469097 Msa0581130:intron
GGAACATCAATTGCAAAGGT+GGG 0.576460 4_1:+86466732 Msa0581130:CDS
GTTGATCGGCGGCACAAATG+CGG 0.581332 4_1:+86468607 Msa0581130:CDS
TTCTCCATTGGAGGACCTAG+TGG 0.584400 4_1:+86465072 Msa0581130:CDS
TCATGTGGATGATGTCACTC+AGG 0.584599 4_1:+86465281 Msa0581130:CDS
AGTGAAACGACAACAATTGG+AGG 0.594927 4_1:+86468659 Msa0581130:CDS
TAGTGGAAATTTAGTTGCTG+CGG 0.595599 4_1:+86465089 Msa0581130:CDS
AATTATCCCAGGTACTCTTG+TGG 0.598714 4_1:+86465217 Msa0581130:intron
GAACTATGAACTCTGGACAT+AGG 0.601738 4_1:-86468734 None:intergenic
TATGGGAACATCAATTGCAA+AGG 0.605817 4_1:+86466728 Msa0581130:CDS
TCGTTGTTCCTCGACATCCA+TGG 0.607781 4_1:-86464216 None:intergenic
AGATGGTACTATCAGGACTT+GGG 0.627841 4_1:+86464633 Msa0581130:CDS
ATTTCCACTAGGTCCTCCAA+TGG 0.630109 4_1:-86465076 None:intergenic
GCAGAAGCAATTCTCGAAGG+TGG 0.633134 4_1:+86468683 Msa0581130:CDS
AATTGCGGCCATGGATGTCG+AGG 0.639683 4_1:+86464208 Msa0581130:CDS
GGTGCAGAAGCAATTCTCGA+AGG 0.645612 4_1:+86468680 Msa0581130:CDS
GGATGATTGGAGTTCAATGG+CGG 0.648745 4_1:+86464468 Msa0581130:CDS
ATCGTCGTTAATATCTCCAG+TGG 0.649496 4_1:-86466390 None:intergenic
CGACGATGATCATCTAGAGT+CGG 0.653681 4_1:+86466406 Msa0581130:CDS
ATTATGTATCACTAGCGTCA+AGG 0.654361 4_1:+86469175 Msa0581130:three_prime_UTR
ATCAAAACTAGTATTAGTAG+GGG 0.658117 4_1:-86468901 None:intergenic
AAACTGTATTCACCAGTGGT+GGG 0.659751 4_1:+86464514 Msa0581130:CDS
CAATATTATGGAGAGTGCAA+GGG 0.660822 4_1:+86464538 Msa0581130:CDS
GCAGCAACTAAATTTCCACT+AGG 0.673218 4_1:-86465087 None:intergenic
AGTGAAACTGTATTCACCAG+TGG 0.687068 4_1:+86464510 Msa0581130:CDS
TGAATATGAAGGTGCAATTG+CGG 0.692798 4_1:-86464155 None:intergenic
ATATGAAGGTGCAATTGCGG+TGG 0.696941 4_1:-86464152 None:intergenic
ATGCCTAGAAGATTCTCATG+TGG 0.767526 4_1:+86465266 Msa0581130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATAGTTTCTATAAA+AGG + chr4_1:86467411-86467430 Msa0581130:intron 10.0%
!! TAAAATTAAATTAAAGTCTT+CGG - chr4_1:86468141-86468160 None:intergenic 10.0%
!! TAAATTGTATAAAATTTATG+AGG - chr4_1:86468164-86468183 None:intergenic 10.0%
!! AAAAAATAAATAAAAACCTT+TGG - chr4_1:86468928-86468947 None:intergenic 10.0%
!!! AAAGGTTTTTATTTATTTTT+TGG + chr4_1:86468927-86468946 Msa0581130:three_prime_UTR 10.0%
!!! TTAGTTTTTTTTATTAAACT+TGG + chr4_1:86468959-86468978 Msa0581130:three_prime_UTR 10.0%
!!! TAGTTTTTTTTATTAAACTT+GGG + chr4_1:86468960-86468979 Msa0581130:three_prime_UTR 10.0%
!!! TCTTTTTTAAAATATAAAAG+GGG - chr4_1:86469068-86469087 None:intergenic 10.0%
!!! TCTTTTTTAAAATATAAAAG+GGG - chr4_1:86469068-86469087 None:intergenic 10.0%
!! AATTAAGAAAAAAAAAAGTG+AGG + chr4_1:86464065-86464084 Msa0581130:five_prime_UTR 15.0%
!! TTGTTACTAATGTTATTATT+TGG + chr4_1:86464688-86464707 Msa0581130:intron 15.0%
!!! AATTAAGTTGTTTATCTATA+AGG - chr4_1:86464738-86464757 None:intergenic 15.0%
!!! TGATATAATTGTTATTTCTT+TGG + chr4_1:86465660-86465679 Msa0581130:intron 15.0%
!! AATACAAGGAATTAAATATT+TGG - chr4_1:86465775-86465794 None:intergenic 15.0%
!! TTATCTGAGTTAAATATATT+TGG - chr4_1:86466500-86466519 None:intergenic 15.0%
!!! ACATTTTTTCAAATTTTTAC+CGG + chr4_1:86467035-86467054 Msa0581130:intron 15.0%
!!! ATCACATTACATTTTTATTT+TGG - chr4_1:86467582-86467601 None:intergenic 15.0%
!! TTCTCTTTAAATTAATAATG+TGG + chr4_1:86467877-86467896 Msa0581130:intron 15.0%
!!! TTCCATCATATTTTTTTTGT+TGG - chr4_1:86464042-86464061 None:intergenic 20.0%
!!! TTTTATTTATGCCCTTAATT+TGG + chr4_1:86464408-86464427 Msa0581130:intron 20.0%
!! TTTATTTATGCCCTTAATTT+GGG + chr4_1:86464409-86464428 Msa0581130:intron 20.0%
!! TTATAAAACTCCCAAATTAA+GGG - chr4_1:86464422-86464441 None:intergenic 20.0%
!! ATTATAAAACTCCCAAATTA+AGG - chr4_1:86464423-86464442 None:intergenic 20.0%
!!! TTTGGGAGTTTTATAATTTT+TGG + chr4_1:86464426-86464445 Msa0581130:intron 20.0%
!!! TTGGGAGTTTTATAATTTTT+GGG + chr4_1:86464427-86464446 Msa0581130:intron 20.0%
!!! TATCAATCAGATTTTGTTTT+CGG + chr4_1:86464573-86464592 Msa0581130:CDS 20.0%
!! ATCTTATTGCAGAAAAATAA+TGG + chr4_1:86465716-86465735 Msa0581130:intron 20.0%
!! TTATAAATCTACAAGGAATA+AGG - chr4_1:86465750-86465769 None:intergenic 20.0%
!!! TTTGGTTTTATAAATCTACA+AGG - chr4_1:86465757-86465776 None:intergenic 20.0%
!!! TAGAATTTGCTTTTTAACTT+TGG + chr4_1:86465987-86466006 Msa0581130:intron 20.0%
!!! CAATTTACAACCTTTTTAAA+TGG + chr4_1:86466474-86466493 Msa0581130:intron 20.0%
!! ATATATTTGGCCATTTAAAA+AGG - chr4_1:86466487-86466506 None:intergenic 20.0%
!! CACATTTGAAAAAAAAAAAC+AGG + chr4_1:86466618-86466637 Msa0581130:intron 20.0%
!! AAAATGTAGGTGATTAATAT+GGG + chr4_1:86466711-86466730 Msa0581130:intron 20.0%
!!! ACATTACATTTTTATTTTGG+AGG - chr4_1:86467579-86467598 None:intergenic 20.0%
!!! ATTTTATACAATTTAGTTCC+TGG + chr4_1:86468169-86468188 Msa0581130:intron 20.0%
!!! ATTTGTCAATTTGCTAAATT+CGG + chr4_1:86468319-86468338 Msa0581130:intron 20.0%
!!! TTTTTTATTAAACTTGGGTT+AGG + chr4_1:86468965-86468984 Msa0581130:three_prime_UTR 20.0%
!! ATTGCATGTAATATTTGTAA+TGG + chr4_1:86469027-86469046 Msa0581130:intron 20.0%
!! TTGCATGTAATATTTGTAAT+GGG + chr4_1:86469028-86469047 Msa0581130:intron 20.0%
!! ATTGCATGTAATATTTGTAA+TGG + chr4_1:86469027-86469046 Msa0581130:intron 20.0%
!! TTGCATGTAATATTTGTAAT+GGG + chr4_1:86469028-86469047 Msa0581130:intron 20.0%
!!! ATCATATTTTTTTTGTTGGC+GGG - chr4_1:86464038-86464057 None:intergenic 25.0%
!!! CATCATATTTTTTTTGTTGG+CGG - chr4_1:86464039-86464058 None:intergenic 25.0%
! AAACAGTCACAAACAATAAA+TGG + chr4_1:86464181-86464200 Msa0581130:exon 25.0%
! AACTCTATCCAAACTAATTT+CGG + chr4_1:86464281-86464300 Msa0581130:CDS 25.0%
!!! TTTTTGGGTTTTTTTGTGAA+TGG + chr4_1:86464442-86464461 Msa0581130:intron 25.0%
!!! ATCAATCAGATTTTGTTTTC+GGG + chr4_1:86464574-86464593 Msa0581130:CDS 25.0%
!! GTTTTTCTCTCCATAATTAT+TGG + chr4_1:86464710-86464729 Msa0581130:intron 25.0%
! TCAAATAAGTCAATGCAAAT+AGG + chr4_1:86464957-86464976 Msa0581130:intron 25.0%
!! TAATCTAAAACTTGATCTGA+TGG + chr4_1:86465336-86465355 Msa0581130:intron 25.0%
!! TTTTATAAACTGCCAACAAA+TGG + chr4_1:86465446-86465465 Msa0581130:intron 25.0%
! TTTATAAACTGCCAACAAAT+GGG + chr4_1:86465447-86465466 Msa0581130:intron 25.0%
! TGTTAGGACTATAGAATAAA+AGG + chr4_1:86465499-86465518 Msa0581130:intron 25.0%
! ATAGTATTCTCTATTGTGAA+GGG + chr4_1:86465625-86465644 Msa0581130:intron 25.0%
!!! TTTCTTTGGAATTCAATTCT+TGG + chr4_1:86465674-86465693 Msa0581130:intron 25.0%
!!! TTCTTTGGAATTCAATTCTT+GGG + chr4_1:86465675-86465694 Msa0581130:intron 25.0%
! ATAAGATTTCCACTATTGTT+AGG - chr4_1:86465703-86465722 None:intergenic 25.0%
! TTATTGCAGAAAAATAATGG+AGG + chr4_1:86465719-86465738 Msa0581130:intron 25.0%
!! TTATTTATGCAGGATTAGTA+AGG + chr4_1:86465916-86465935 Msa0581130:intron 25.0%
! TTAGTAAGGAGTAATTCAAT+TGG + chr4_1:86465930-86465949 Msa0581130:intron 25.0%
! AAAATACATGTGACAAATTC+AGG - chr4_1:86466063-86466082 None:intergenic 25.0%
!! ATGTATTTTATTACCTTGCT+TGG + chr4_1:86466074-86466093 Msa0581130:intron 25.0%
!! TGTCTATTTTCATTTTCTGA+GGG - chr4_1:86466175-86466194 None:intergenic 25.0%
! GAAAATGAAAATAGACAGTA+AGG + chr4_1:86466178-86466197 Msa0581130:intron 25.0%
! AGATAAGTAATCAACAGAAT+AGG + chr4_1:86466514-86466533 Msa0581130:intron 25.0%
! AAGCATCAATAGTGTAAATA+GGG - chr4_1:86466577-86466596 None:intergenic 25.0%
!!! ATTTTTTGCTTGCAAAATGT+AGG + chr4_1:86466698-86466717 Msa0581130:intron 25.0%
! CAAAATGTAGGTGATTAATA+TGG + chr4_1:86466710-86466729 Msa0581130:intron 25.0%
! TTAACTCATATTGAAACTCT+CGG + chr4_1:86466789-86466808 Msa0581130:CDS 25.0%
!! TATTCTTTTGTGTAGCATTT+GGG + chr4_1:86467237-86467256 Msa0581130:CDS 25.0%
! ATAAGCATATTCCATCAAAT+AGG - chr4_1:86467355-86467374 None:intergenic 25.0%
!! CATTGTAGTTCTATTGTAAT+CGG + chr4_1:86467471-86467490 Msa0581130:intron 25.0%
!!! TTAATTTTCGAAGAAAGCAT+TGG - chr4_1:86467548-86467567 None:intergenic 25.0%
! GTAGTATATGTAATTTAGCA+TGG - chr4_1:86467768-86467787 None:intergenic 25.0%
!!! ATGCTCTGAATTTTATGAAT+TGG + chr4_1:86467916-86467935 Msa0581130:intron 25.0%
! CTTATTCAGTCATAAATACA+TGG + chr4_1:86468388-86468407 Msa0581130:intron 25.0%
!!! TCCAAGATTGGTTTTTTTTA+GGG - chr4_1:86468826-86468845 None:intergenic 25.0%
!!! ATCCAAGATTGGTTTTTTTT+AGG - chr4_1:86468827-86468846 None:intergenic 25.0%
! ATCAAAACTAGTATTAGTAG+GGG - chr4_1:86468904-86468923 None:intergenic 25.0%
! CATCAAAACTAGTATTAGTA+GGG - chr4_1:86468905-86468924 None:intergenic 25.0%
! TGCATGTAATATTTGTAATG+GGG + chr4_1:86469029-86469048 Msa0581130:intron 25.0%
! TGCATGTAATATTTGTAATG+GGG + chr4_1:86469029-86469048 Msa0581130:intron 25.0%
!!! TCATATTTTTTTTGTTGGCG+GGG - chr4_1:86464037-86464056 None:intergenic 30.0%
CGCCAACAAAAAAAATATGA+TGG + chr4_1:86464037-86464056 Msa0581130:five_prime_UTR 30.0%
! TTATTGAGCTTTTGCTTAAC+TGG + chr4_1:86464088-86464107 Msa0581130:five_prime_UTR 30.0%
!! GACTGTTTCTATGAATATGA+AGG - chr4_1:86464169-86464188 None:intergenic 30.0%
ACAATAAATGGAAGCAATTG+CGG + chr4_1:86464193-86464212 Msa0581130:exon 30.0%
AGCTTAAGAAGAAAGTGAAA+AGG - chr4_1:86464343-86464362 None:intergenic 30.0%
GAACAAGAGCTTAGAATATT+GGG - chr4_1:86464610-86464629 None:intergenic 30.0%
AGAACAAGAGCTTAGAATAT+TGG - chr4_1:86464611-86464630 None:intergenic 30.0%
! CTATAAGGCACCAATAATTA+TGG - chr4_1:86464723-86464742 None:intergenic 30.0%
ATAAGCACGTATATGATTAG+TGG - chr4_1:86464778-86464797 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAG+TGG - chr4_1:86464947-86464966 None:intergenic 30.0%
AAATTGAATGTCAAAACTGC+AGG + chr4_1:86465008-86465027 Msa0581130:intron 30.0%
TATCTATCTATCTATCACCA+AGG - chr4_1:86465150-86465169 None:intergenic 30.0%
TGAAATGATTTAGACTGGTA+TGG + chr4_1:86465175-86465194 Msa0581130:intron 30.0%
!!! CATTCTTACGTCAGTTTTTT+AGG - chr4_1:86465407-86465426 None:intergenic 30.0%
AAGTAGTTATACGTTGTTAG+AGG + chr4_1:86465537-86465556 Msa0581130:intron 30.0%
TGTTAGAGGAATATGTGTAT+AGG + chr4_1:86465551-86465570 Msa0581130:intron 30.0%
CATAGTATTCTCTATTGTGA+AGG + chr4_1:86465624-86465643 Msa0581130:intron 30.0%
TAGTATTCTCTATTGTGAAG+GGG + chr4_1:86465626-86465645 Msa0581130:intron 30.0%
AAGTCTCCAACTAACAATAT+CGG - chr4_1:86465804-86465823 None:intergenic 30.0%
!! TGGCTTGTTCAAAAAAAGTA+AGG + chr4_1:86465950-86465969 Msa0581130:intron 30.0%
! CTGTCTATTTTCATTTTCTG+AGG - chr4_1:86466176-86466195 None:intergenic 30.0%
TGTTGAAAATGTGTGATTCT+AGG + chr4_1:86466295-86466314 Msa0581130:intron 30.0%
!! GGTTATTAATTTGCATGTTG+TGG - chr4_1:86466556-86466575 None:intergenic 30.0%
CAAGCATCAATAGTGTAAAT+AGG - chr4_1:86466578-86466597 None:intergenic 30.0%
TCTTCAGTTCAAATATGCAA+AGG - chr4_1:86466654-86466673 None:intergenic 30.0%
TAACTCATATTGAAACTCTC+GGG + chr4_1:86466790-86466809 Msa0581130:CDS 30.0%
GAGGAAATAAAAACCAGTAA+TGG - chr4_1:86466828-86466847 None:intergenic 30.0%
!!! ACTGGTTTTTATTTCCTCAA+TGG + chr4_1:86466830-86466849 Msa0581130:intron 30.0%
TAAACTATATCTAGCCATTG+AGG - chr4_1:86466847-86466866 None:intergenic 30.0%
! GAATTGATGACTTTGAATTC+AGG - chr4_1:86466909-86466928 None:intergenic 30.0%
CATCAATTCATAGTTGCTAA+TGG + chr4_1:86466920-86466939 Msa0581130:intron 30.0%
! CTATTCTTTTGTGTAGCATT+TGG + chr4_1:86467236-86467255 Msa0581130:CDS 30.0%
CTTATTTGTTTGAACCTGAA+AGG + chr4_1:86467370-86467389 Msa0581130:intron 30.0%
ACAATAGAACTACAATGGAT+CGG - chr4_1:86467468-86467487 None:intergenic 30.0%
CGATTACAATAGAACTACAA+TGG - chr4_1:86467473-86467492 None:intergenic 30.0%
AATTCCACAACTTGAAATCA+TGG + chr4_1:86467507-86467526 Msa0581130:intron 30.0%
AAAAATGTAATGTGATGCGT+AGG + chr4_1:86467586-86467605 Msa0581130:intron 30.0%
TGGAGAAAAGAAAGAAAGAA+TGG + chr4_1:86467653-86467672 Msa0581130:intron 30.0%
AGAAAAGAAAGAAAGAATGG+AGG + chr4_1:86467656-86467675 Msa0581130:intron 30.0%
GAAAAGAAAGAAAGAATGGA+GGG + chr4_1:86467657-86467676 Msa0581130:intron 30.0%
AAAAGAAAGAAAGAATGGAG+GGG + chr4_1:86467658-86467677 Msa0581130:intron 30.0%
!! TGCAATTTTGAGGATCAATT+TGG + chr4_1:86468362-86468381 Msa0581130:intron 30.0%
AAGGTAATTGCAATCAGATA+AGG - chr4_1:86468445-86468464 None:intergenic 30.0%
!! AAAGATCAATTTGTTGGCTA+AGG - chr4_1:86468522-86468541 None:intergenic 30.0%
GAAAGGAAAGATCAATTTGT+TGG - chr4_1:86468528-86468547 None:intergenic 30.0%
CAAGAGAAGCTGAAAAATTA+TGG + chr4_1:86468585-86468604 Msa0581130:CDS 30.0%
GCTGAAAAATTATGGTTGAT+CGG + chr4_1:86468593-86468612 Msa0581130:CDS 30.0%
!!! CCAAGATTGGTTTTTTTTAG+GGG - chr4_1:86468825-86468844 None:intergenic 30.0%
ATGAACTTGAAATCCAAGAT+TGG - chr4_1:86468838-86468857 None:intergenic 30.0%
!! ATCTTGGATTTCAAGTTCAT+TGG + chr4_1:86468838-86468857 Msa0581130:CDS 30.0%
! TTTTTCTTGCAAGTTCTTTC+TGG - chr4_1:86468872-86468891 None:intergenic 30.0%
GCATCAAAACTAGTATTAGT+AGG - chr4_1:86468906-86468925 None:intergenic 30.0%
!!! AATACTAGTTTTGATGCCAA+AGG + chr4_1:86468909-86468928 Msa0581130:exon 30.0%
! TGAATATGAAGGTGCAATTG+CGG - chr4_1:86464158-86464177 None:intergenic 35.0%
AATCGTCACCGAAATTAGTT+TGG - chr4_1:86464292-86464311 None:intergenic 35.0%
AAGTGAAAAGGACGTACTTT+GGG - chr4_1:86464331-86464350 None:intergenic 35.0%
AAAGTGAAAAGGACGTACTT+TGG - chr4_1:86464332-86464351 None:intergenic 35.0%
!!! TGGGTTTTTTTGTGAATGGA+AGG + chr4_1:86464446-86464465 Msa0581130:intron 35.0%
!!! GGGTTTTTTTGTGAATGGAA+GGG + chr4_1:86464447-86464466 Msa0581130:intron 35.0%
! TCAATATTATGGAGAGTGCA+AGG + chr4_1:86464537-86464556 Msa0581130:CDS 35.0%
! CAATATTATGGAGAGTGCAA+GGG + chr4_1:86464538-86464557 Msa0581130:CDS 35.0%
CTTATTTCCATAAGCTCTTG+AGG - chr4_1:86464869-86464888 None:intergenic 35.0%
CAGGTTTCTATTATCAATGC+TGG + chr4_1:86465027-86465046 Msa0581130:intron 35.0%
AAGCTGAAGATTTCTTGAGA+TGG - chr4_1:86465054-86465073 None:intergenic 35.0%
TAGTGGAAATTTAGTTGCTG+CGG + chr4_1:86465089-86465108 Msa0581130:CDS 35.0%
!! TCACAGGTTTGCTTTTCTAT+TGG + chr4_1:86465120-86465139 Msa0581130:intron 35.0%
CTGTGTGAAATGATTTAGAC+TGG + chr4_1:86465170-86465189 Msa0581130:intron 35.0%
ACAAACATCCTTTCACCAAA+GGG - chr4_1:86465370-86465389 None:intergenic 35.0%
!!! CTTACGTCAGTTTTTTAGGA+GGG - chr4_1:86465403-86465422 None:intergenic 35.0%
!!! TCTTACGTCAGTTTTTTAGG+AGG - chr4_1:86465404-86465423 None:intergenic 35.0%
AAAAACTGACGTAAGAATGC+AGG + chr4_1:86465408-86465427 Msa0581130:intron 35.0%
TGTAAGAGGAAACAGTTGTT+AGG + chr4_1:86465483-86465502 Msa0581130:intron 35.0%
AGAGGAATATGTGTATAGGT+AGG + chr4_1:86465555-86465574 Msa0581130:intron 35.0%
AGGTAGGACAATACAAATGT+TGG + chr4_1:86465571-86465590 Msa0581130:intron 35.0%
AATATCGGACACAGAATACA+AGG - chr4_1:86465789-86465808 None:intergenic 35.0%
!! TGTCTGTAGCCATTTTCATT+AGG + chr4_1:86465848-86465867 Msa0581130:intron 35.0%
CCATGTTGACCTAATGAAAA+TGG - chr4_1:86465860-86465879 None:intergenic 35.0%
! CCATTTTCATTAGGTCAACA+TGG + chr4_1:86465857-86465876 Msa0581130:intron 35.0%
CATATCATTCTACTCGTACA+AGG - chr4_1:86466013-86466032 None:intergenic 35.0%
CTTGTACGAGTAGAATGATA+TGG + chr4_1:86466011-86466030 Msa0581130:intron 35.0%
TGATATGGAGTGATCAACTT+TGG + chr4_1:86466026-86466045 Msa0581130:intron 35.0%
GACAAATTCAGGATTTGTCA+AGG - chr4_1:86466052-86466071 None:intergenic 35.0%
TTGGCTTCAGTTGAATGATA+TGG + chr4_1:86466093-86466112 Msa0581130:intron 35.0%
TATATATGCTCCAGCTTGAA+GGG - chr4_1:86466237-86466256 None:intergenic 35.0%
ATATATATGCTCCAGCTTGA+AGG - chr4_1:86466238-86466257 None:intergenic 35.0%
! CATTTTATCCCTGAAGAACA+AGG + chr4_1:86466320-86466339 Msa0581130:CDS 35.0%
ATCTGCATATTTGATACCAC+TGG + chr4_1:86466374-86466393 Msa0581130:CDS 35.0%
TTGCAAGAATTGTCAACTGA+AGG - chr4_1:86466457-86466476 None:intergenic 35.0%
TATGGGAACATCAATTGCAA+AGG + chr4_1:86466728-86466747 Msa0581130:CDS 35.0%
!!! ATTGCAAAGGTGGGTTTTTT+TGG + chr4_1:86466741-86466760 Msa0581130:CDS 35.0%
GTACAATTCATCTCCATTAC+TGG + chr4_1:86466812-86466831 Msa0581130:CDS 35.0%
AGTGCATCATAGCTAATGAA+TGG + chr4_1:86467094-86467113 Msa0581130:intron 35.0%
ACACTCTTATGCTCTTAATG+TGG + chr4_1:86467135-86467154 Msa0581130:intron 35.0%
CACTCTTATGCTCTTAATGT+GGG + chr4_1:86467136-86467155 Msa0581130:intron 35.0%
! TGCTCTTAATGTGGGTTATA+TGG + chr4_1:86467144-86467163 Msa0581130:intron 35.0%
! GTACTTTAGCTTCTGAAAGT+TGG + chr4_1:86467302-86467321 Msa0581130:CDS 35.0%
! AGCTTCTGAAAGTTGGAATT+TGG + chr4_1:86467309-86467328 Msa0581130:CDS 35.0%
GTTCTTTCCTTCCTATTTGA+TGG + chr4_1:86467341-86467360 Msa0581130:intron 35.0%
GCATATTCCATCAAATAGGA+AGG - chr4_1:86467351-86467370 None:intergenic 35.0%
TACGAAGTATAACACCTTTC+AGG - chr4_1:86467387-86467406 None:intergenic 35.0%
TATTGTAATCGGCCTTACTT+AGG + chr4_1:86467482-86467501 Msa0581130:intron 35.0%
! TTGTGGAATTAGCCTAAGTA+AGG - chr4_1:86467497-86467516 None:intergenic 35.0%
AAAGAAAGAAAGAATGGAGG+GGG + chr4_1:86467659-86467678 Msa0581130:intron 35.0%
! CTCTTTAAACCTGATCCTTT+TGG + chr4_1:86467700-86467719 Msa0581130:intron 35.0%
CCTCTAACAATAGAAGTCAA+CGG - chr4_1:86467986-86468005 None:intergenic 35.0%
! CAATTTAGTTCCTGGTGATA+TGG + chr4_1:86468177-86468196 Msa0581130:intron 35.0%
CATTTAATGTGCCACATCAT+AGG + chr4_1:86468235-86468254 Msa0581130:intron 35.0%
! GATCCATACTTGCAATTTTG+AGG + chr4_1:86468352-86468371 Msa0581130:intron 35.0%
GATCCTCAAAATTGCAAGTA+TGG - chr4_1:86468358-86468377 None:intergenic 35.0%
CAGTCATAAATACATGGCAT+TGG + chr4_1:86468394-86468413 Msa0581130:intron 35.0%
ATCTGATTGCAATTACCTTG+TGG + chr4_1:86468446-86468465 Msa0581130:intron 35.0%
AAGCTTGTATACTGCTCTAT+TGG + chr4_1:86468474-86468493 Msa0581130:intron 35.0%
AGCTTGTATACTGCTCTATT+GGG + chr4_1:86468475-86468494 Msa0581130:intron 35.0%
! GATCTTTCCTTTCTTTTTGC+AGG + chr4_1:86468535-86468554 Msa0581130:intron 35.0%
TAGTCAACCTGCAAAAAGAA+AGG - chr4_1:86468545-86468564 None:intergenic 35.0%
GAAAAATTATGGTTGATCGG+CGG + chr4_1:86468596-86468615 Msa0581130:CDS 35.0%
GTCGTTTCACTGTAATTTAC+AGG - chr4_1:86468650-86468669 None:intergenic 35.0%
TACAGTGAAACGACAACAAT+TGG + chr4_1:86468656-86468675 Msa0581130:CDS 35.0%
CACTTCTAACAACATCTGTA+TGG - chr4_1:86468709-86468728 None:intergenic 35.0%
! GTTCATAGTTCAGGCATTTT+TGG + chr4_1:86468746-86468765 Msa0581130:CDS 35.0%
!! ATAGTTCAGGCATTTTTGGA+TGG + chr4_1:86468750-86468769 Msa0581130:CDS 35.0%
CCCCTAAAAAAAACCAATCT+TGG + chr4_1:86468822-86468841 Msa0581130:CDS 35.0%
! TAAACTTGGGTTAGGATTGA+TGG + chr4_1:86468973-86468992 Msa0581130:three_prime_UTR 35.0%
!!! GGTTAGGATTGATGGATTTT+GGG + chr4_1:86468981-86469000 Msa0581130:three_prime_UTR 35.0%
ATTATGTATCACTAGCGTCA+AGG + chr4_1:86469175-86469194 Msa0581130:three_prime_UTR 35.0%
!! GTGGAAGAAAAGGGTTTTAG+GGG - chr4_1:86464136-86464155 None:intergenic 40.0%
! GGTGGAAGAAAAGGGTTTTA+GGG - chr4_1:86464137-86464156 None:intergenic 40.0%
CGTTTAACGTTGTTGGGTAT+GGG - chr4_1:86464248-86464267 None:intergenic 40.0%
TTGTGAATGGAAGGGATGAT+TGG + chr4_1:86464455-86464474 Msa0581130:intron 40.0%
AAGGGATGATTGGAGTTCAA+TGG + chr4_1:86464465-86464484 Msa0581130:intron 40.0%
AGTGAAACTGTATTCACCAG+TGG + chr4_1:86464510-86464529 Msa0581130:CDS 40.0%
AAACTGTATTCACCAGTGGT+GGG + chr4_1:86464514-86464533 Msa0581130:CDS 40.0%
CTAAGCTCTTGTTCTTCAGA+TGG + chr4_1:86464616-86464635 Msa0581130:CDS 40.0%
GTTCTTCAGATGGTACTATC+AGG + chr4_1:86464626-86464645 Msa0581130:CDS 40.0%
AGATGGTACTATCAGGACTT+GGG + chr4_1:86464633-86464652 Msa0581130:CDS 40.0%
GGACACAAGAACATTTCAAC+AGG + chr4_1:86464654-86464673 Msa0581130:CDS 40.0%
! CTGAGGATAGCTTGTGAAAA+CGG - chr4_1:86464845-86464864 None:intergenic 40.0%
TCAAGCAGCAAAGAGATCAT+GGG - chr4_1:86464983-86465002 None:intergenic 40.0%
GAAATCTTCAGCTTCTCCAT+TGG + chr4_1:86465060-86465079 Msa0581130:CDS 40.0%
GCAGCAACTAAATTTCCACT+AGG - chr4_1:86465090-86465109 None:intergenic 40.0%
AGTGGAAATTTAGTTGCTGC+GGG + chr4_1:86465090-86465109 Msa0581130:CDS 40.0%
!! CAGGTTTGCTTTTCTATTGG+AGG + chr4_1:86465123-86465142 Msa0581130:intron 40.0%
CTGTGTTGTGTAATTATCCC+AGG + chr4_1:86465206-86465225 Msa0581130:intron 40.0%
AATTATCCCAGGTACTCTTG+TGG + chr4_1:86465217-86465236 Msa0581130:intron 40.0%
ATTATCCCAGGTACTCTTGT+GGG + chr4_1:86465218-86465237 Msa0581130:intron 40.0%
ATGCCTAGAAGATTCTCATG+TGG + chr4_1:86465266-86465285 Msa0581130:CDS 40.0%
CATCCACATGAGAATCTTCT+AGG - chr4_1:86465272-86465291 None:intergenic 40.0%
AGTTGTAACCCTTTGGTGAA+AGG + chr4_1:86465359-86465378 Msa0581130:intron 40.0%
GACAAACATCCTTTCACCAA+AGG - chr4_1:86465371-86465390 None:intergenic 40.0%
TGGTGAAAGGATGTTTGTCT+TGG + chr4_1:86465372-86465391 Msa0581130:intron 40.0%
TCTTGGGTTCCTAACAATAG+TGG + chr4_1:86465691-86465710 Msa0581130:intron 40.0%
CTGTGTCCGATATTGTTAGT+TGG + chr4_1:86465795-86465814 Msa0581130:intron 40.0%
AAAATGGCTACAGACAGAAC+CGG - chr4_1:86465844-86465863 None:intergenic 40.0%
CATTAGGTCAACATGGCTTT+AGG + chr4_1:86465864-86465883 Msa0581130:intron 40.0%
GCATAAATAAGCAGTTTGCG+TGG - chr4_1:86465906-86465925 None:intergenic 40.0%
CGCAAACTGCTTATTTATGC+AGG + chr4_1:86465906-86465925 Msa0581130:intron 40.0%
AAAAAAACTCCCCTTCAAGC+TGG + chr4_1:86466224-86466243 Msa0581130:intron 40.0%
ATATATGCTCCAGCTTGAAG+GGG - chr4_1:86466236-86466255 None:intergenic 40.0%
CTCATTTCTGCTTCAGTTGA+TGG + chr4_1:86466347-86466366 Msa0581130:CDS 40.0%
ATCGTCGTTAATATCTCCAG+TGG - chr4_1:86466393-86466412 None:intergenic 40.0%
GGAACATCAATTGCAAAGGT+GGG + chr4_1:86466732-86466751 Msa0581130:CDS 40.0%
GAGAGAGTTATCAGAAGCTT+TGG + chr4_1:86466763-86466782 Msa0581130:CDS 40.0%
! CTCTTCCTCTCTTTTTGCTA+TGG + chr4_1:86467186-86467205 Msa0581130:CDS 40.0%
ATCAGCCATAGCAAAAAGAG+AGG - chr4_1:86467194-86467213 None:intergenic 40.0%
!! TTTTGTGTAGCATTTGGGAC+TGG + chr4_1:86467242-86467261 Msa0581130:CDS 40.0%
TTCTTTGAACTCTGTAGTGG+AGG - chr4_1:86467441-86467460 None:intergenic 40.0%
TCCACTACAGAGTTCAAAGA+AGG + chr4_1:86467440-86467459 Msa0581130:intron 40.0%
TCCTTCTTTGAACTCTGTAG+TGG - chr4_1:86467444-86467463 None:intergenic 40.0%
!! GAAGCCATGATTTCAAGTTG+TGG - chr4_1:86467514-86467533 None:intergenic 40.0%
TTGCTTGTCATGAGACAGAA+TGG + chr4_1:86467633-86467652 Msa0581130:intron 40.0%
AAGAAAGAAAGAATGGAGGG+GGG + chr4_1:86467660-86467679 Msa0581130:intron 40.0%
! CTGAAAAGCACACAAAGCAA+AGG - chr4_1:86467745-86467764 None:intergenic 40.0%
CTACTTCATATTGAAGTGCG+TGG + chr4_1:86467784-86467803 Msa0581130:intron 40.0%
! CTGGAATTTTCGTCAAAGCT+TGG - chr4_1:86467824-86467843 None:intergenic 40.0%
! CAAGCTTTGACGAAAATTCC+AGG + chr4_1:86467822-86467841 Msa0581130:intron 40.0%
TTTGACGAAAATTCCAGGAG+AGG + chr4_1:86467827-86467846 Msa0581130:intron 40.0%
! GTCAACGGAGTGACTATTTT+CGG - chr4_1:86467971-86467990 None:intergenic 40.0%
!! CCGTTGACTTCTATTGTTAG+AGG + chr4_1:86467983-86468002 Msa0581130:intron 40.0%
TGACACATTAACTGAACACG+TGG + chr4_1:86468014-86468033 Msa0581130:intron 40.0%
ACATTGAAGTGAGATCCAAG+TGG - chr4_1:86468044-86468063 None:intergenic 40.0%
GTTGATGTAAGATCCACGTA+GGG + chr4_1:86468201-86468220 Msa0581130:intron 40.0%
TTGATGTAAGATCCACGTAG+GGG + chr4_1:86468202-86468221 Msa0581130:intron 40.0%
CCATCTGTTAACACTGATGT+CGG - chr4_1:86468263-86468282 None:intergenic 40.0%
! ATACAAGCTTTTGCTCCACA+AGG - chr4_1:86468464-86468483 None:intergenic 40.0%
AGTGAAACGACAACAATTGG+AGG + chr4_1:86468659-86468678 Msa0581130:CDS 40.0%
GAACTATGAACTCTGGACAT+AGG - chr4_1:86468737-86468756 None:intergenic 40.0%
ATGTCCAGAGTTCATAGTTC+AGG + chr4_1:86468737-86468756 Msa0581130:CDS 40.0%
AATGCCTGAACTATGAACTC+TGG - chr4_1:86468744-86468763 None:intergenic 40.0%
AAGATGGTAGGCTATGTTGT+TGG + chr4_1:86468783-86468802 Msa0581130:CDS 40.0%
ACTAGTATTAGTAGGGGTGA+TGG - chr4_1:86468898-86468917 None:intergenic 40.0%
!!! GGGTTAGGATTGATGGATTT+TGG + chr4_1:86468980-86468999 Msa0581130:three_prime_UTR 40.0%
! CGGTGGAAGAAAAGGGTTTT+AGG - chr4_1:86464138-86464157 None:intergenic 45.0%
GCAATTGCGGTGGAAGAAAA+GGG - chr4_1:86464145-86464164 None:intergenic 45.0%
TGCAATTGCGGTGGAAGAAA+AGG - chr4_1:86464146-86464165 None:intergenic 45.0%
! ATATGAAGGTGCAATTGCGG+TGG - chr4_1:86464155-86464174 None:intergenic 45.0%
ACGTTGTTGGGTATGGGAAA+AGG - chr4_1:86464242-86464261 None:intergenic 45.0%
GCGTTTAACGTTGTTGGGTA+TGG - chr4_1:86464249-86464268 None:intergenic 45.0%
! CCGAAGCGTTTAACGTTGTT+GGG - chr4_1:86464254-86464273 None:intergenic 45.0%
CCCAACAACGTTAAACGCTT+CGG + chr4_1:86464251-86464270 Msa0581130:CDS 45.0%
! ACCGAAGCGTTTAACGTTGT+TGG - chr4_1:86464255-86464274 None:intergenic 45.0%
!! GGACGTACTTTGGGATGATT+TGG - chr4_1:86464322-86464341 None:intergenic 45.0%
GGATGATTGGAGTTCAATGG+CGG + chr4_1:86464468-86464487 Msa0581130:CDS 45.0%
GAAACTGTATTCACCAGTGG+TGG + chr4_1:86464513-86464532 Msa0581130:CDS 45.0%
CCATAATATTGACCCACCAC+TGG - chr4_1:86464529-86464548 None:intergenic 45.0%
!! CCAGTGGTGGGTCAATATTA+TGG + chr4_1:86464526-86464545 Msa0581130:CDS 45.0%
CAGATGGTACTATCAGGACT+TGG + chr4_1:86464632-86464651 Msa0581130:CDS 45.0%
CTCAAGCAGCAAAGAGATCA+TGG - chr4_1:86464984-86465003 None:intergenic 45.0%
ATCTTCAGCTTCTCCATTGG+AGG + chr4_1:86465063-86465082 Msa0581130:CDS 45.0%
ATTTCCACTAGGTCCTCCAA+TGG - chr4_1:86465079-86465098 None:intergenic 45.0%
! GCTTTTCTATTGGAGGACCT+TGG + chr4_1:86465130-86465149 Msa0581130:intron 45.0%
TCATGTGGATGATGTCACTC+AGG + chr4_1:86465281-86465300 Msa0581130:CDS 45.0%
CTGATGGAGTTGTAACCCTT+TGG + chr4_1:86465352-86465371 Msa0581130:intron 45.0%
! AAACTGCCAACAAATGGGCT+CGG + chr4_1:86465452-86465471 Msa0581130:intron 45.0%
AATATCCCGAGCCCATTTGT+TGG - chr4_1:86465461-86465480 None:intergenic 45.0%
! GCTCGGGATATTTCTGTAAG+AGG + chr4_1:86465469-86465488 Msa0581130:intron 45.0%
!!! TTCGAGTGACTGGCTTTTTC+CGG + chr4_1:86465822-86465841 Msa0581130:intron 45.0%
CATTCAACTGAAGCCAAGCA+AGG - chr4_1:86466090-86466109 None:intergenic 45.0%
! TGAGCTTGCCTTGTTCTTCA+GGG - chr4_1:86466331-86466350 None:intergenic 45.0%
! ATGAGCTTGCCTTGTTCTTC+AGG - chr4_1:86466332-86466351 None:intergenic 45.0%
! CGACGATGATCATCTAGAGT+CGG + chr4_1:86466406-86466425 Msa0581130:CDS 45.0%
GGGAACATCAATTGCAAAGG+TGG + chr4_1:86466731-86466750 Msa0581130:CDS 45.0%
! AGCATTTGGGACTGGAAAGA+AGG + chr4_1:86467250-86467269 Msa0581130:CDS 45.0%
! TTGAACTCTGTAGTGGAGGT+TGG - chr4_1:86467437-86467456 None:intergenic 45.0%
AGGAAAGCTCCAAAAGGATC+AGG - chr4_1:86467712-86467731 None:intergenic 45.0%
CATATTGAAGTGCGTGGAGT+TGG + chr4_1:86467790-86467809 Msa0581130:intron 45.0%
AAGTCTTCGGATCTCAAGAG+TGG - chr4_1:86468128-86468147 None:intergenic 45.0%
TACATCAACGCCATATCACC+AGG - chr4_1:86468190-86468209 None:intergenic 45.0%
CGTTGATGTAAGATCCACGT+AGG + chr4_1:86468200-86468219 Msa0581130:intron 45.0%
TGATGTAAGATCCACGTAGG+GGG + chr4_1:86468203-86468222 Msa0581130:intron 45.0%
TGATGTCGGAACCTATGATG+TGG - chr4_1:86468249-86468268 None:intergenic 45.0%
CCGACATCAGTGTTAACAGA+TGG + chr4_1:86468260-86468279 Msa0581130:intron 45.0%
!! ATGGCATTGGTTGAACAAGC+TGG + chr4_1:86468407-86468426 Msa0581130:intron 45.0%
!! TGGCATTGGTTGAACAAGCT+GGG + chr4_1:86468408-86468427 Msa0581130:intron 45.0%
!! TCAGGCATTTTTGGATGGAC+AGG + chr4_1:86468755-86468774 Msa0581130:CDS 45.0%
!! GCATTTTTGGATGGACAGGT+GGG + chr4_1:86468759-86468778 Msa0581130:CDS 45.0%
!! CATTTTTGGATGGACAGGTG+GGG + chr4_1:86468760-86468779 Msa0581130:CDS 45.0%
!!! TTCTTTTTTAAAATATAAAA+GGG - chr4_1:86469069-86469088 None:intergenic 5.0%
!!! TTTCTTTTTTAAAATATAAA+AGG - chr4_1:86469070-86469089 None:intergenic 5.0%
!!! TTCTTTTTTAAAATATAAAA+GGG - chr4_1:86469069-86469088 None:intergenic 5.0%
!!! TTTCTTTTTTAAAATATAAA+AGG - chr4_1:86469070-86469089 None:intergenic 5.0%
AATGGAAGCAATTGCGGCCA+TGG + chr4_1:86464199-86464218 Msa0581130:exon 50.0%
TCGTTGTTCCTCGACATCCA+TGG - chr4_1:86464219-86464238 None:intergenic 50.0%
CCATAAGCTCTTGAGGTCTG+AGG - chr4_1:86464862-86464881 None:intergenic 50.0%
CCTCAGACCTCAAGAGCTTA+TGG + chr4_1:86464859-86464878 Msa0581130:intron 50.0%
TTCTCCATTGGAGGACCTAG+TGG + chr4_1:86465072-86465091 Msa0581130:CDS 50.0%
!! CCAATCCCACAAGAGTACCT+GGG - chr4_1:86465226-86465245 None:intergenic 50.0%
!! TCCAATCCCACAAGAGTACC+TGG - chr4_1:86465227-86465246 None:intergenic 50.0%
! AACTGCCAACAAATGGGCTC+GGG + chr4_1:86465453-86465472 Msa0581130:intron 50.0%
AGTTGGAGACTTCGAGTGAC+TGG + chr4_1:86465812-86465831 Msa0581130:intron 50.0%
!! TGTAGCACCGACACTTCTGA+TGG + chr4_1:86466947-86466966 Msa0581130:intron 50.0%
! ACGCCTTCCATCAGAAGTGT+CGG - chr4_1:86466957-86466976 None:intergenic 50.0%
TGACACATGCACGTTGACAC+CGG - chr4_1:86467057-86467076 None:intergenic 50.0%
CCTGGAAGGAAAGCTCCAAA+AGG - chr4_1:86467718-86467737 None:intergenic 50.0%
!!! CCTTTTGGAGCTTTCCTTCC+AGG + chr4_1:86467715-86467734 Msa0581130:intron 50.0%
AAAGCAAAGGCTCTCCTGGA+AGG - chr4_1:86467732-86467751 None:intergenic 50.0%
ACACAAAGCAAAGGCTCTCC+TGG - chr4_1:86467736-86467755 None:intergenic 50.0%
! ATACAAGCTCTAGCCTCTCC+TGG - chr4_1:86467843-86467862 None:intergenic 50.0%
!! CGGTGCTGCGTTATTATCTC+AGG - chr4_1:86467951-86467970 None:intergenic 50.0%
TGAACACGTGGTCTTCCACT+TGG + chr4_1:86468026-86468045 Msa0581130:intron 50.0%
TGAACATGTAACCCCCTACG+TGG - chr4_1:86468217-86468236 None:intergenic 50.0%
GGCACAAATGCGGGTACTTT+GGG + chr4_1:86468617-86468636 Msa0581130:CDS 50.0%
GGTGCAGAAGCAATTCTCGA+AGG + chr4_1:86468680-86468699 Msa0581130:CDS 50.0%
GCAGAAGCAATTCTCGAAGG+TGG + chr4_1:86468683-86468702 Msa0581130:CDS 50.0%
!! GGCATTTTTGGATGGACAGG+TGG + chr4_1:86468758-86468777 Msa0581130:CDS 50.0%
AATTGCGGCCATGGATGTCG+AGG + chr4_1:86464208-86464227 Msa0581130:CDS 55.0%
! TGCTGCGGGTTGTGATTCAC+AGG + chr4_1:86465104-86465123 Msa0581130:CDS 55.0%
CCCAGGTACTCTTGTGGGAT+TGG + chr4_1:86465223-86465242 Msa0581130:intron 55.0%
! GCACCGACACTTCTGATGGA+AGG + chr4_1:86466951-86466970 Msa0581130:intron 55.0%
! CTTCTGATGGAAGGCGTGTC+CGG + chr4_1:86466960-86466979 Msa0581130:intron 55.0%
CACTGACACGTGTCGAACAC+CGG - chr4_1:86466982-86467001 None:intergenic 55.0%
TGTTCGACACGTGTCAGTGC+CGG + chr4_1:86466983-86467002 Msa0581130:intron 55.0%
GTCAGTGTCGTGTCAGTGAC+CGG - chr4_1:86467005-86467024 None:intergenic 55.0%
GTTGATCGGCGGCACAAATG+CGG + chr4_1:86468607-86468626 Msa0581130:CDS 55.0%
TTGATCGGCGGCACAAATGC+GGG + chr4_1:86468608-86468627 Msa0581130:CDS 55.0%
CGGCACAAATGCGGGTACTT+TGG + chr4_1:86468616-86468635 Msa0581130:CDS 55.0%
GGATGGACAGGTGGGGAAGA+TGG + chr4_1:86468767-86468786 Msa0581130:CDS 60.0%
GGACAGGTGGGGAAGATGGT+AGG + chr4_1:86468771-86468790 Msa0581130:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 86464029 86469218 86464029 ID=Msa0581130;Name=Msa0581130
chr4_1 mRNA 86464029 86469218 86464029 ID=Msa0581130-mRNA-1;Parent=Msa0581130;Name=Msa0581130-mRNA-1;_AED=0.18;_eAED=0.18;_QI=171|0.87|0.77|1|0.87|0.77|9|240|415
chr4_1 exon 86464029 86464333 86464029 ID=Msa0581130-mRNA-1:exon:31920;Parent=Msa0581130-mRNA-1
chr4_1 exon 86464468 86464675 86464468 ID=Msa0581130-mRNA-1:exon:31921;Parent=Msa0581130-mRNA-1
chr4_1 exon 86465030 86465125 86465030 ID=Msa0581130-mRNA-1:exon:31922;Parent=Msa0581130-mRNA-1
chr4_1 exon 86465228 86465302 86465228 ID=Msa0581130-mRNA-1:exon:31923;Parent=Msa0581130-mRNA-1
chr4_1 exon 86466317 86466427 86466317 ID=Msa0581130-mRNA-1:exon:31924;Parent=Msa0581130-mRNA-1
chr4_1 exon 86466720 86466833 86466720 ID=Msa0581130-mRNA-1:exon:31925;Parent=Msa0581130-mRNA-1
chr4_1 exon 86467181 86467336 86467181 ID=Msa0581130-mRNA-1:exon:31926;Parent=Msa0581130-mRNA-1
chr4_1 exon 86468557 86469033 86468557 ID=Msa0581130-mRNA-1:exon:31927;Parent=Msa0581130-mRNA-1
chr4_1 exon 86469102 86469218 86469102 ID=Msa0581130-mRNA-1:exon:31928;Parent=Msa0581130-mRNA-1
chr4_1 five_prime_UTR 86464029 86464199 86464029 ID=Msa0581130-mRNA-1:five_prime_utr;Parent=Msa0581130-mRNA-1
chr4_1 CDS 86464200 86464333 86464200 ID=Msa0581130-mRNA-1:cds;Parent=Msa0581130-mRNA-1
chr4_1 CDS 86464468 86464675 86464468 ID=Msa0581130-mRNA-1:cds;Parent=Msa0581130-mRNA-1
chr4_1 CDS 86465030 86465125 86465030 ID=Msa0581130-mRNA-1:cds;Parent=Msa0581130-mRNA-1
chr4_1 CDS 86465228 86465302 86465228 ID=Msa0581130-mRNA-1:cds;Parent=Msa0581130-mRNA-1
chr4_1 CDS 86466317 86466427 86466317 ID=Msa0581130-mRNA-1:cds;Parent=Msa0581130-mRNA-1
chr4_1 CDS 86466720 86466833 86466720 ID=Msa0581130-mRNA-1:cds;Parent=Msa0581130-mRNA-1
chr4_1 CDS 86467181 86467336 86467181 ID=Msa0581130-mRNA-1:cds;Parent=Msa0581130-mRNA-1
chr4_1 CDS 86468557 86468910 86468557 ID=Msa0581130-mRNA-1:cds;Parent=Msa0581130-mRNA-1
chr4_1 three_prime_UTR 86468911 86469033 86468911 ID=Msa0581130-mRNA-1:three_prime_utr;Parent=Msa0581130-mRNA-1
chr4_1 three_prime_UTR 86469102 86469218 86469102 ID=Msa0581130-mRNA-1:three_prime_utr;Parent=Msa0581130-mRNA-1
Gene Sequence

>Msa0581130

ATGGAAGCAATTGCGGCCATGGATGTCGAGGAACAACGACCTTTTCCCATACCCAACAACGTTAAACGCTTCGGTCTTAAAAACTCTATCCAAACTAATTTCGGTGACGATTATGTTTTCCAAATCATCCCAAAGGATGATTGGAGTTCAATGGCGGTTTCACTTTCGACGAACGCAGTGAAACTGTATTCACCAGTGGTGGGTCAATATTATGGAGAGTGCAAGGGTCACACTGCAACTATCAATCAGATTTTGTTTTCGGGTCATTCTAATCCCAATATTCTAAGCTCTTGTTCTTCAGATGGTACTATCAGGACTTGGGACACAAGAACATTTCAACAGGTTTCTATTATCAATGCTGGTCCATCTCAAGAAATCTTCAGCTTCTCCATTGGAGGACCTAGTGGAAATTTAGTTGCTGCGGGTTGTGATTCACAGGTACTCTTGTGGGATTGGAGAAATAACAAGCAAATTGCATGCCTAGAAGATTCTCATGTGGATGATGTCACTCAGGTTCATTTTATCCCTGAAGAACAAGGCAAGCTCATTTCTGCTTCAGTTGATGGATTGATCTGCATATTTGATACCACTGGAGATATTAACGACGATGATCATCTAGAGTCGGTGATTAATATGGGAACATCAATTGCAAAGGTGGGTTTTTTTGGAGAGAGTTATCAGAAGCTTTGGTGTTTAACTCATATTGAAACTCTCGGGTACAATTCATCTCCATTACTGATTTACTCTTCCTCTCTTTTTGCTATGGCTGATTCTTATATTTCATTGATTCGTTCTATTCTTTTGTGTAGCATTTGGGACTGGAAAGAAGGTAGAAATGAAGTAAACTTCTCAGACACGCGTACTTTAGCTTCTGAAAGTTGGAATTTGGATCATGTTGACTACTTCGTTGATTGTCACTACTCAAGAGAAGCTGAAAAATTATGGTTGATCGGCGGCACAAATGCGGGTACTTTGGGTTTCTTTCCTGTAAATTACAGTGAAACGACAACAATTGGAGGTGCAGAAGCAATTCTCGAAGGTGGCCATACAGATGTTGTTAGAAGTGTTCTACCTATGTCCAGAGTTCATAGTTCAGGCATTTTTGGATGGACAGGTGGGGAAGATGGTAGGCTATGTTGTTGGCTGTCTGATGATGATTCCCCTAAAAAAAACCAATCTTGGATTTCAAGTTCATTGGTTATGAAACCAGAAAGAACTTGCAAGAAAAATCGCCATCACCCCTACTAA

Protein sequence

>Msa0581130

MEAIAAMDVEEQRPFPIPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWSSMAVSLSTNAVKLYSPVVGQYYGECKGHTATINQILFSGHSNPNILSSCSSDGTIRTWDTRTFQQVSIINAGPSQEIFSFSIGGPSGNLVAAGCDSQVLLWDWRNNKQIACLEDSHVDDVTQVHFIPEEQGKLISASVDGLICIFDTTGDINDDDHLESVINMGTSIAKVGFFGESYQKLWCLTHIETLGYNSSPLLIYSSSLFAMADSYISLIRSILLCSIWDWKEGRNEVNFSDTRTLASESWNLDHVDYFVDCHYSREAEKLWLIGGTNAGTLGFFPVNYSETTTIGGAEAILEGGHTDVVRSVLPMSRVHSSGIFGWTGGEDGRLCCWLSDDDSPKKNQSWISSSLVMKPERTCKKNRHHPY*