Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265340 | XP_003597581.1 | 85.283 | 265 | 27 | 1 | 1 | 253 | 1 | 265 | 2.39e-148 | 428 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265340 | G7IS52 | 85.283 | 265 | 27 | 1 | 1 | 253 | 1 | 265 | 1.14e-148 | 428 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008090 | Msa0265340 | 0.805207 | 1.491898e-49 | -8.615850e-47 |
| Msa0029630 | Msa0265340 | 0.803291 | 3.738325e-49 | -8.615850e-47 |
| Msa0038870 | Msa0265340 | 0.802507 | 5.429739e-49 | -8.615850e-47 |
| Msa0043860 | Msa0265340 | 0.813924 | 2.000259e-51 | -8.615850e-47 |
| Msa0068020 | Msa0265340 | 0.805561 | 1.258168e-49 | -8.615850e-47 |
| Msa0073670 | Msa0265340 | 0.803358 | 3.622097e-49 | -8.615850e-47 |
| Msa0098740 | Msa0265340 | 0.800104 | 1.685216e-48 | -8.615850e-47 |
| Msa0115370 | Msa0265340 | 0.804341 | 2.263516e-49 | -8.615850e-47 |
| Msa0226330 | Msa0265340 | 0.815950 | 7.108157e-52 | -8.615850e-47 |
| Msa0226460 | Msa0265340 | 0.824972 | 6.040543e-54 | -8.615850e-47 |
| Msa0231100 | Msa0265340 | 0.801745 | 7.788935e-49 | -8.615850e-47 |
| Msa0241830 | Msa0265340 | 0.807792 | 4.251984e-50 | -8.615850e-47 |
| Msa0245580 | Msa0265340 | 0.801456 | 8.925813e-49 | -8.615850e-47 |
| Msa0249580 | Msa0265340 | 0.806953 | 6.403835e-50 | -8.615850e-47 |
| Msa0257490 | Msa0265340 | 0.806950 | 6.412527e-50 | -8.615850e-47 |
| Msa0265340 | Msa0281530 | 0.813626 | 2.327460e-51 | -8.615850e-47 |
| Msa0265340 | Msa0296250 | 0.818351 | 2.050961e-52 | -8.615850e-47 |
| Msa0265340 | Msa0296790 | 0.827126 | 1.857980e-54 | -8.615850e-47 |
| Msa0265340 | Msa0304660 | 0.800548 | 1.368817e-48 | -8.615850e-47 |
| Msa0265340 | Msa0320590 | 0.810575 | 1.076975e-50 | -8.615850e-47 |
| Msa0265340 | Msa0385500 | 0.803548 | 3.307064e-49 | -8.615850e-47 |
| Msa0265340 | Msa0434570 | 0.800807 | 1.211780e-48 | -8.615850e-47 |
| Msa0265340 | Msa0434770 | 0.803800 | 2.932112e-49 | -8.615850e-47 |
| Msa0265340 | Msa0511770 | 0.837984 | 3.763682e-57 | -8.615850e-47 |
| Msa0265340 | Msa0524500 | 0.821354 | 4.221311e-53 | -8.615850e-47 |
| Msa0265340 | Msa0547160 | 0.819251 | 1.281162e-52 | -8.615850e-47 |
| Msa0265340 | Msa0547990 | 0.816772 | 4.655102e-52 | -8.615850e-47 |
| Msa0265340 | Msa0581110 | 0.810869 | 9.299004e-51 | -8.615850e-47 |
| Msa0265340 | Msa0581130 | 0.814770 | 1.300500e-51 | -8.615850e-47 |
| Msa0265340 | Msa0603570 | 0.808743 | 2.665290e-50 | -8.615850e-47 |
| Msa0265340 | Msa0609000 | 0.806493 | 8.008072e-50 | -8.615850e-47 |
| Msa0265340 | Msa0642970 | 0.818222 | 2.193720e-52 | -8.615850e-47 |
| Msa0265340 | Msa0644030 | 0.805773 | 1.135288e-49 | -8.615850e-47 |
| Msa0265340 | Msa0666230 | 0.802779 | 4.771434e-49 | -8.615850e-47 |
| Msa0265340 | Msa0689500 | 0.802927 | 4.446998e-49 | -8.615850e-47 |
| Msa0265340 | Msa0694990 | 0.821988 | 3.012031e-53 | -8.615850e-47 |
| Msa0265340 | Msa0709600 | 0.957783 | 1.176700e-115 | -8.615850e-47 |
| Msa0265340 | Msa0794970 | 0.802732 | 4.878820e-49 | -8.615850e-47 |
| Msa0265340 | Msa0824640 | 0.807448 | 5.031151e-50 | -8.615850e-47 |
| Msa0265340 | Msa0826500 | 0.819828 | 9.458963e-53 | -8.615850e-47 |
| Msa0265340 | Msa0833190 | -0.801553 | 8.529732e-49 | -8.615850e-47 |
| Msa0265340 | Msa0898040 | 0.823576 | 1.286234e-53 | -8.615850e-47 |
| Msa0265340 | Msa0913240 | 0.800135 | 1.660896e-48 | -8.615850e-47 |
| Msa0265340 | Msa0943170 | 0.822417 | 2.395193e-53 | -8.615850e-47 |
| Msa0265340 | Msa0963020 | 0.800563 | 1.358933e-48 | -8.615850e-47 |
| Msa0265340 | Msa1009750 | 0.808885 | 2.485147e-50 | -8.615850e-47 |
| Msa0265340 | Msa1083880 | 0.800243 | 1.579098e-48 | -8.615850e-47 |
| Msa0265340 | Msa1087480 | 0.805145 | 1.537369e-49 | -8.615850e-47 |
| Msa0265340 | Msa1097820 | 0.809883 | 1.517841e-50 | -8.615850e-47 |
| Msa0265340 | Msa1123350 | 0.805929 | 1.052915e-49 | -8.615850e-47 |
| Msa0265340 | Msa1126830 | 0.813736 | 2.201131e-51 | -8.615850e-47 |
| Msa0265340 | Msa1131560 | 0.809781 | 1.596813e-50 | -8.615850e-47 |
| Msa0265340 | Msa1165780 | 0.814333 | 1.625084e-51 | -8.615850e-47 |
| Msa0265340 | Msa1165960 | 0.817232 | 3.668562e-52 | -8.615850e-47 |
| Msa0265340 | Msa1179950 | 0.811909 | 5.530808e-51 | -8.615850e-47 |
| Msa0265340 | Msa1179980 | 0.824383 | 8.316060e-54 | -8.615850e-47 |
| Msa0265340 | Msa1192850 | 0.804520 | 2.077115e-49 | -8.615850e-47 |
| Msa0265340 | Msa1202580 | 0.828872 | 7.060446e-55 | -8.615850e-47 |
| Msa0265340 | Msa1204830 | 0.808843 | 2.537282e-50 | -8.615850e-47 |
| Msa0265340 | Msa1206650 | 0.803727 | 3.036830e-49 | -8.615850e-47 |
| Msa0265340 | Msa1211830 | 0.811444 | 6.980080e-51 | -8.615850e-47 |
| Msa0265340 | Msa1227690 | 0.802922 | 4.457721e-49 | -8.615850e-47 |
| Msa0265340 | Msa1270620 | 0.824155 | 9.408354e-54 | -8.615850e-47 |
| Msa0265340 | Msa1270690 | 0.825619 | 4.246659e-54 | -8.615850e-47 |
| Msa0265340 | Msa1278900 | 0.806748 | 7.076696e-50 | -8.615850e-47 |
| Msa0265340 | Msa1295110 | 0.832631 | 8.468335e-56 | -8.615850e-47 |
| Msa0265340 | Msa1296830 | 0.811034 | 8.566599e-51 | -8.615850e-47 |
| Msa0265340 | Msa1303580 | 0.804959 | 1.681259e-49 | -8.615850e-47 |
| Msa0265340 | Msa1306990 | 0.821040 | 4.986491e-53 | -8.615850e-47 |
| Msa0265340 | Msa1327490 | 0.810875 | 9.272760e-51 | -8.615850e-47 |
| Msa0265340 | Msa1331250 | 0.804552 | 2.045121e-49 | -8.615850e-47 |
| Msa0265340 | Msa1335250 | 0.806321 | 8.705934e-50 | -8.615850e-47 |
| Msa0265340 | Msa1351540 | 0.802383 | 5.758147e-49 | -8.615850e-47 |
| Msa0265340 | Msa1362420 | 0.801294 | 9.634366e-49 | -8.615850e-47 |
| Msa0265340 | Msa1364010 | 0.938037 | 1.301971e-98 | -8.615850e-47 |
| Msa0265340 | Msa1367590 | 0.831029 | 2.103894e-55 | -8.615850e-47 |
| Msa0265340 | Msa1376650 | 0.805878 | 1.079033e-49 | -8.615850e-47 |
| Msa0265340 | Msa1397940 | 0.810442 | 1.150516e-50 | -8.615850e-47 |
| Msa0265340 | Msa1459960 | 0.807819 | 4.196074e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265340 | MtrunA17_Chr2g0330081 | 85.283 | 265 | 27 | 1 | 1 | 253 | 1 | 265 | 2.20e-152 | 428 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265340 | AT3G13780.1 | 40.625 | 288 | 158 | 5 | 1 | 275 | 14 | 301 | 2.47e-53 | 176 |
Find 76 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAAATTGATCCTGTTAA+AGG | 0.155025 | 2_2:-65612369 | Msa0265340:intron |
| GAAATTCGAAATGGGTCATT+TGG | 0.296722 | 2_2:-65612496 | Msa0265340:CDS |
| TCAAAGTTATTACCTTTAAC+AGG | 0.314979 | 2_2:+65612357 | None:intergenic |
| AAGGTTTCATTTCAAGTCAT+TGG | 0.319227 | 2_2:-65612573 | Msa0265340:CDS |
| GAATGAAGCCTTGTATGTTT+AGG | 0.320634 | 2_2:-65610349 | Msa0265340:three_prime_UTR |
| TCATTGGAAGAAACCCTATC+TGG | 0.338307 | 2_2:-65612557 | Msa0265340:CDS |
| TGATCCGGAATGTGGAGAAT+TGG | 0.345241 | 2_2:-65610915 | Msa0265340:CDS |
| ATGTTCTCATAACTGATAAT+TGG | 0.345555 | 2_2:-65610270 | Msa0265340:three_prime_UTR |
| TCATCCTCACTTTCTTTGCT+AGG | 0.386031 | 2_2:+65610874 | None:intergenic |
| TTGTTCTTCAAAACCCAGAT+AGG | 0.388052 | 2_2:+65612543 | None:intergenic |
| GGATCATGCCCTTTGGATAC+TGG | 0.392754 | 2_2:+65610932 | None:intergenic |
| GTATCTTTGATATCTCTCTT+AGG | 0.392852 | 2_2:+65610685 | None:intergenic |
| TGTCTGCGAAAACACCCTTT+TGG | 0.394919 | 2_2:-65612452 | Msa0265340:CDS |
| AAGGAACTTGTTGCTAAGGT+TGG | 0.407977 | 2_2:-65610757 | Msa0265340:CDS |
| CTTCTTCAAATTGAACCAAA+AGG | 0.419549 | 2_2:+65612437 | None:intergenic |
| TGAGGATGAGGAAGAGGAAG+AGG | 0.426013 | 2_2:-65610551 | Msa0265340:CDS |
| GATCCGGAATGTGGAGAATT+GGG | 0.436535 | 2_2:-65610914 | Msa0265340:CDS |
| AGGAACTTGTTGCTAAGGTT+GGG | 0.441377 | 2_2:-65610756 | Msa0265340:CDS |
| ACATTCCGGATCATGCCCTT+TGG | 0.441791 | 2_2:+65610925 | None:intergenic |
| TGAGGAAGAGGAAGAGGAGG+AGG | 0.442921 | 2_2:-65610545 | Msa0265340:CDS |
| TGAGGATAAAAGGAAAATGA+AGG | 0.453909 | 2_2:-65610842 | Msa0265340:CDS |
| GAAATGGGTCATTTGGAACT+TGG | 0.454601 | 2_2:-65612489 | Msa0265340:CDS |
| TGTTTCTCGTCATCACGTTT+CGG | 0.455853 | 2_2:-65612631 | Msa0265340:CDS |
| ACACTGTTCGGACGAGGTTG+CGG | 0.458112 | 2_2:-65612675 | Msa0265340:CDS |
| ATGACTTGAAATGAAACCTT+AGG | 0.465906 | 2_2:+65612576 | None:intergenic |
| TTCTTCAAATTGAACCAAAA+GGG | 0.471521 | 2_2:+65612438 | None:intergenic |
| TGGTGATAGTGACGATGATA+AGG | 0.485152 | 2_2:-65610776 | Msa0265340:CDS |
| TGACAATGAGGATGAGGAAG+AGG | 0.499436 | 2_2:-65610557 | Msa0265340:CDS |
| CATCACAAGGCCACGGCACT+TGG | 0.512507 | 2_2:+65610448 | None:intergenic |
| TAGCAAAGAAAGTGAGGATG+AGG | 0.513147 | 2_2:-65610872 | Msa0265340:CDS |
| GCTGTGGCGGTGTAAAATCA+AGG | 0.516324 | 2_2:-65610496 | Msa0265340:exon |
| AACAGCGACAAAACACTGTT+CGG | 0.516498 | 2_2:-65612687 | Msa0265340:CDS |
| AATCAGACTCGTTGTTGAGT+TGG | 0.519462 | 2_2:+65612607 | None:intergenic |
| TGTTCTTCAAAACCCAGATA+GGG | 0.524313 | 2_2:+65612544 | None:intergenic |
| ACTCCCAATTCTCCACATTC+CGG | 0.528495 | 2_2:+65610911 | None:intergenic |
| TGATAAGGAACTTGTTGCTA+AGG | 0.529588 | 2_2:-65610761 | Msa0265340:CDS |
| GCAAGGTCTAAAGACAATAG+AGG | 0.531239 | 2_2:-65610709 | Msa0265340:CDS |
| AGTATCCAAAGGGCATGATC+CGG | 0.532093 | 2_2:-65610930 | Msa0265340:CDS |
| ATGGAGTTCGAAGGCGAAGA+TGG | 0.533843 | 2_2:-65612729 | Msa0265340:CDS |
| GTCTGATTCAGAGCCTCCTA+AGG | 0.535965 | 2_2:-65612592 | Msa0265340:CDS |
| TGATGAAGAAGATGAGGATG+AGG | 0.536649 | 2_2:-65610590 | Msa0265340:CDS |
| GGATGAGGAAGAGGAAGAGG+AGG | 0.536791 | 2_2:-65610548 | Msa0265340:CDS |
| TTAGACCTTGCGGAGTACCT+AGG | 0.545892 | 2_2:+65610721 | None:intergenic |
| CATTGGAAGAAACCCTATCT+GGG | 0.552765 | 2_2:-65612556 | Msa0265340:CDS |
| GACAAAACACTGTTCGGACG+AGG | 0.556592 | 2_2:-65612681 | Msa0265340:CDS |
| AAACAATGACAATGAGGATG+AGG | 0.562409 | 2_2:-65610563 | Msa0265340:CDS |
| GAGGATAAAAGGAAAATGAA+GGG | 0.567105 | 2_2:-65610841 | Msa0265340:CDS |
| TCTATTGTCTTTAGACCTTG+CGG | 0.572441 | 2_2:+65610711 | None:intergenic |
| TTGGGAAAGGTAAGAAACCT+AGG | 0.574841 | 2_2:-65610738 | Msa0265340:CDS |
| AACAAAGATGACGAGTGGAC+TGG | 0.577011 | 2_2:-65610796 | Msa0265340:CDS |
| CTTGTTGCTAAGGTTGGGAA+AGG | 0.577595 | 2_2:-65610751 | Msa0265340:CDS |
| GAGTTTGACCAGTATCCAAA+GGG | 0.590357 | 2_2:-65610940 | Msa0265340:CDS |
| ACTTGAAATGAAACCTTAGG+AGG | 0.593531 | 2_2:+65612579 | None:intergenic |
| CTGTGGCGGTGTAAAATCAA+GGG | 0.601243 | 2_2:-65610495 | Msa0265340:exon |
| AAAGGGCATGATCCGGAATG+TGG | 0.603271 | 2_2:-65610923 | Msa0265340:CDS |
| GACGATGATGAGACGCTAGG+AGG | 0.603685 | 2_2:-65610625 | Msa0265340:CDS |
| CACTACATATCAACATCACA+AGG | 0.606768 | 2_2:+65610435 | None:intergenic |
| AACATAGTCCTAAACATACA+AGG | 0.620114 | 2_2:+65610341 | None:intergenic |
| TGAGTTTGACCAGTATCCAA+AGG | 0.622122 | 2_2:-65610941 | Msa0265340:CDS |
| GGAGCCTAGCAAAGAAAGTG+AGG | 0.635527 | 2_2:-65610878 | Msa0265340:CDS |
| GAGACAACAAAGATGACGAG+TGG | 0.639451 | 2_2:-65610801 | Msa0265340:CDS |
| GAATTGGGAGTGGTTTCTCG+AGG | 0.640949 | 2_2:-65610899 | Msa0265340:CDS |
| TAATTCTGAATGGAGTTCGA+AGG | 0.641013 | 2_2:-65612738 | Msa0265340:exon |
| GGAATGTGGAGAATTGGGAG+TGG | 0.641413 | 2_2:-65610909 | Msa0265340:CDS |
| GGAACAAAACAATGACAATG+AGG | 0.654439 | 2_2:-65610569 | Msa0265340:CDS |
| ATATCAACATCACAAGGCCA+CGG | 0.654785 | 2_2:+65610441 | None:intergenic |
| TGTTACTGATGAAGAAGATG+AGG | 0.658205 | 2_2:-65610596 | Msa0265340:CDS |
| GATGACGATGATGAGACGCT+AGG | 0.662670 | 2_2:-65610628 | Msa0265340:CDS |
| TGTTTAGATACCAAGTGCCG+TGG | 0.663591 | 2_2:-65610458 | Msa0265340:three_prime_UTR |
| AGATATCAAAGATACTAGTG+TGG | 0.683203 | 2_2:-65610677 | Msa0265340:CDS |
| AGAAACCTAGGTACTCCGCA+AGG | 0.683889 | 2_2:-65610726 | Msa0265340:CDS |
| AGAAGATGACGATGATGCTG+TGG | 0.684484 | 2_2:-65610512 | Msa0265340:CDS |
| TGTGGCGGTGTAAAATCAAG+GGG | 0.688596 | 2_2:-65610494 | Msa0265340:exon |
| AGATGACGATGATGCTGTGG+CGG | 0.690723 | 2_2:-65610509 | Msa0265340:CDS |
| CGTGATGACGAGAAACAGTG+TGG | 0.730657 | 2_2:+65612637 | None:intergenic |
| GTGGCGGTGTAAAATCAAGG+GGG | 0.792447 | 2_2:-65610493 | Msa0265340:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTCATTTTCAATATA+AGG | - | chr2_2:65611421-65611440 | Msa0265340:intron | 10.0% |
| !!! | TTTTAACAAAATCGATAATT+TGG | - | chr2_2:65610781-65610800 | Msa0265340:CDS | 15.0% |
| !! | TAATTTATTTAAGTATATCC+AGG | - | chr2_2:65611024-65611043 | Msa0265340:intron | 15.0% |
| !!! | AGTTTATTTTTGTGTTAATT+TGG | - | chr2_2:65611360-65611379 | Msa0265340:intron | 15.0% |
| !! | TACAAATTCCAATATTATTT+AGG | - | chr2_2:65611498-65611517 | Msa0265340:intron | 15.0% |
| !! | ATTATTCAGAAAAACATGTT+TGG | + | chr2_2:65610285-65610304 | None:intergenic | 20.0% |
| !!! | TTTTTCTGAATAATTCTGAA+TGG | - | chr2_2:65610291-65610310 | Msa0265340:three_prime_UTR | 20.0% |
| !!! | ATTTTCAAGAAATTCGAAAT+GGG | - | chr2_2:65610535-65610554 | Msa0265340:CDS | 20.0% |
| !! | AAAAATAGTTTCCATCAAAA+GGG | + | chr2_2:65610709-65610728 | None:intergenic | 20.0% |
| !! | TAGAATTATACTATCCTTAA+AGG | + | chr2_2:65610988-65611007 | None:intergenic | 20.0% |
| !! | TTAAGGATAGTATAATTCTA+AGG | - | chr2_2:65610988-65611007 | Msa0265340:intron | 20.0% |
| !! | AATAAGTTAAAAACAACTCA+TGG | + | chr2_2:65611126-65611145 | None:intergenic | 20.0% |
| !! | CTTATATATAAGCACTTATA+TGG | - | chr2_2:65611237-65611256 | Msa0265340:intron | 20.0% |
| !!! | TTCATTTTCAATATAAGGTA+TGG | - | chr2_2:65611426-65611445 | Msa0265340:intron | 20.0% |
| !!! | TCATTTTCAATATAAGGTAT+GGG | - | chr2_2:65611427-65611446 | Msa0265340:intron | 20.0% |
| !! | AACTTGATCCTAAATAATAT+TGG | + | chr2_2:65611509-65611528 | None:intergenic | 20.0% |
| !!! | GATTTTCAAGAAATTCGAAA+TGG | - | chr2_2:65610534-65610553 | Msa0265340:CDS | 25.0% |
| ! | TTCTTCAAATTGAACCAAAA+GGG | + | chr2_2:65610604-65610623 | None:intergenic | 25.0% |
| ! | TCAAAGTTATTACCTTTAAC+AGG | + | chr2_2:65610685-65610704 | None:intergenic | 25.0% |
| ! | AAAATAGTTTCCATCAAAAG+GGG | + | chr2_2:65610708-65610727 | None:intergenic | 25.0% |
| ! | CAAAAATAGTTTCCATCAAA+AGG | + | chr2_2:65610710-65610729 | None:intergenic | 25.0% |
| !!! | GAAAAGTAAGTTTTTTTAGC+TGG | - | chr2_2:65610803-65610822 | Msa0265340:CDS | 25.0% |
| !! | TTTGAGAGTTTCTTTTGTAT+TGG | - | chr2_2:65610928-65610947 | Msa0265340:CDS | 25.0% |
| !!! | TTTTAGTTTGACTGATTCTT+AGG | - | chr2_2:65611065-65611084 | Msa0265340:intron | 25.0% |
| !! | ATTAAGTTGTTTATCCTAAC+AGG | - | chr2_2:65611285-65611304 | Msa0265340:intron | 25.0% |
| !! | TTAAGTTGTTTATCCTAACA+GGG | - | chr2_2:65611286-65611305 | Msa0265340:intron | 25.0% |
| ! | ATCATAAACTATAGTACTCA+TGG | + | chr2_2:65611328-65611347 | None:intergenic | 25.0% |
| ! | AAAGTATACATGTCCTTAAA+AGG | + | chr2_2:65611403-65611422 | None:intergenic | 25.0% |
| !! | CATTTTCAATATAAGGTATG+GGG | - | chr2_2:65611428-65611447 | Msa0265340:intron | 25.0% |
| ! | GATGCTAATATTATAGAAGA+AGG | + | chr2_2:65611457-65611476 | None:intergenic | 25.0% |
| !!! | CTTTCATTTTTGTTGTTTCT+CGG | - | chr2_2:65611537-65611556 | Msa0265340:intron | 25.0% |
| !! | CTTCATTCCTTTTGTAAATT+TGG | - | chr2_2:65611562-65611581 | Msa0265340:intron | 25.0% |
| ! | TCGAATACTACCTATAAATA+TGG | - | chr2_2:65611616-65611635 | Msa0265340:intron | 25.0% |
| ! | CGAATACTACCTATAAATAT+GGG | - | chr2_2:65611617-65611636 | Msa0265340:intron | 25.0% |
| ! | CAGAATAATCCCATATTTAT+AGG | + | chr2_2:65611629-65611648 | None:intergenic | 25.0% |
| !!! | TAAAAAGTGTTGAACTTTTC+TGG | - | chr2_2:65611687-65611706 | Msa0265340:intron | 25.0% |
| !!! | AAAAAGTGTTGAACTTTTCT+GGG | - | chr2_2:65611688-65611707 | Msa0265340:intron | 25.0% |
| ! | AAAACAAATTCATGCGTAAA+TGG | + | chr2_2:65611992-65612011 | None:intergenic | 25.0% |
| !!! | AATTTTGAAAATGCAGAGTT+TGG | - | chr2_2:65612057-65612076 | Msa0265340:intron | 25.0% |
| ! | ATGTTCTCATAACTGATAAT+TGG | - | chr2_2:65612769-65612788 | Msa0265340:five_prime_UTR | 25.0% |
| ATTCAGAAAAACATGTTTGG+CGG | + | chr2_2:65610282-65610301 | None:intergenic | 30.0% | |
| !! | GCTGTTTTGTAAAGAGAATT+TGG | + | chr2_2:65610338-65610357 | None:intergenic | 30.0% |
| ATGACTTGAAATGAAACCTT+AGG | + | chr2_2:65610466-65610485 | None:intergenic | 30.0% | |
| ! | AAGGTTTCATTTCAAGTCAT+TGG | - | chr2_2:65610466-65610485 | Msa0265340:three_prime_UTR | 30.0% |
| CTTCTTCAAATTGAACCAAA+AGG | + | chr2_2:65610605-65610624 | None:intergenic | 30.0% | |
| TCACAAATTGATCCTGTTAA+AGG | - | chr2_2:65610670-65610689 | Msa0265340:CDS | 30.0% | |
| GTATATTTGTGTAGCCTTTA+AGG | - | chr2_2:65610971-65610990 | Msa0265340:intron | 30.0% | |
| !! | ATAATTCTAAGGCTCTTGTT+TGG | - | chr2_2:65610999-65611018 | Msa0265340:intron | 30.0% |
| !! | GTTAGCTTAATAGCCTTTTA+AGG | - | chr2_2:65611387-65611406 | Msa0265340:intron | 30.0% |
| GAATTTGTAACCAACTAAAG+AGG | + | chr2_2:65611487-65611506 | None:intergenic | 30.0% | |
| CAAGCAACCAAATTTACAAA+AGG | + | chr2_2:65611572-65611591 | None:intergenic | 30.0% | |
| ! | CTTTTGTAAATTTGGTTGCT+TGG | - | chr2_2:65611570-65611589 | Msa0265340:intron | 30.0% |
| !!! | AAAAGTGTTGAACTTTTCTG+GGG | - | chr2_2:65611689-65611708 | Msa0265340:intron | 30.0% |
| GGTTAGAAATGGAAATGAAA+TGG | - | chr2_2:65611710-65611729 | Msa0265340:intron | 30.0% | |
| AATGGAAATGAAATGGTTAC+TGG | - | chr2_2:65611717-65611736 | Msa0265340:intron | 30.0% | |
| AACTGAAAATCTCTTTCTCA+AGG | + | chr2_2:65611755-65611774 | None:intergenic | 30.0% | |
| TGAATTATACTACCCTTAGA+AGG | + | chr2_2:65611925-65611944 | None:intergenic | 30.0% | |
| TTCTGTTTATGTTCACTTGA+TGG | - | chr2_2:65611946-65611965 | Msa0265340:intron | 30.0% | |
| ! | AATTCACAGTGATAGCTTTT+AGG | - | chr2_2:65612015-65612034 | Msa0265340:intron | 30.0% |
| !!! | AGTTTGGTTTTCTTGTTATG+AGG | - | chr2_2:65612073-65612092 | Msa0265340:intron | 30.0% |
| !! | AGGATGATTTTGAGGATAAA+AGG | - | chr2_2:65612187-65612206 | Msa0265340:intron | 30.0% |
| TGAGGATAAAAGGAAAATGA+AGG | - | chr2_2:65612197-65612216 | Msa0265340:intron | 30.0% | |
| GAGGATAAAAGGAAAATGAA+GGG | - | chr2_2:65612198-65612217 | Msa0265340:intron | 30.0% | |
| GTATCTTTGATATCTCTCTT+AGG | + | chr2_2:65612357-65612376 | None:intergenic | 30.0% | |
| AGATATCAAAGATACTAGTG+TGG | - | chr2_2:65612362-65612381 | Msa0265340:intron | 30.0% | |
| AACATAGTCCTAAACATACA+AGG | + | chr2_2:65612701-65612720 | None:intergenic | 30.0% | |
| TAATTCTGAATGGAGTTCGA+AGG | - | chr2_2:65610301-65610320 | Msa0265340:three_prime_UTR | 35.0% | |
| ACTTGAAATGAAACCTTAGG+AGG | + | chr2_2:65610463-65610482 | None:intergenic | 35.0% | |
| TGTTCTTCAAAACCCAGATA+GGG | + | chr2_2:65610498-65610517 | None:intergenic | 35.0% | |
| TTGTTCTTCAAAACCCAGAT+AGG | + | chr2_2:65610499-65610518 | None:intergenic | 35.0% | |
| GAAATTCGAAATGGGTCATT+TGG | - | chr2_2:65610543-65610562 | Msa0265340:CDS | 35.0% | |
| ! | TTTTCGCAGACAAGCAAAAT+CGG | + | chr2_2:65610579-65610598 | None:intergenic | 35.0% |
| ! | ATAACTTTGACCCCTTTTGA+TGG | - | chr2_2:65610695-65610714 | Msa0265340:CDS | 35.0% |
| TCCTGCTAAGAAAATGTCAT+TGG | + | chr2_2:65610869-65610888 | None:intergenic | 35.0% | |
| ! | GGATATGAGTTGCAAGTTTT+AGG | - | chr2_2:65610949-65610968 | Msa0265340:CDS | 35.0% |
| ! | CTCATGGTTGACTTAGATTT+AGG | + | chr2_2:65611312-65611331 | None:intergenic | 35.0% |
| ! | TTGTCTTTTGAACTTGAGTG+TGG | - | chr2_2:65611663-65611682 | Msa0265340:intron | 35.0% |
| ! | TGTCTTTTGAACTTGAGTGT+GGG | - | chr2_2:65611664-65611683 | Msa0265340:intron | 35.0% |
| !!! | AACTTTTCTGGGGTTAGAAA+TGG | - | chr2_2:65611699-65611718 | Msa0265340:intron | 35.0% |
| AATCTCTTTCTCAAGGAATG+TGG | + | chr2_2:65611748-65611767 | None:intergenic | 35.0% | |
| TGCTGAATTCATGTCAACAA+TGG | - | chr2_2:65611791-65611810 | Msa0265340:intron | 35.0% | |
| TTATATCTTGCAAGTGTCTG+TGG | - | chr2_2:65611891-65611910 | Msa0265340:intron | 35.0% | |
| !! | TGATAAGGAACTTGTTGCTA+AGG | - | chr2_2:65612278-65612297 | Msa0265340:intron | 35.0% |
| TCTATTGTCTTTAGACCTTG+CGG | + | chr2_2:65612331-65612350 | None:intergenic | 35.0% | |
| TGTTACTGATGAAGAAGATG+AGG | - | chr2_2:65612443-65612462 | Msa0265340:CDS | 35.0% | |
| GGAACAAAACAATGACAATG+AGG | - | chr2_2:65612470-65612489 | Msa0265340:CDS | 35.0% | |
| AAACAATGACAATGAGGATG+AGG | - | chr2_2:65612476-65612495 | Msa0265340:CDS | 35.0% | |
| CACTACATATCAACATCACA+AGG | + | chr2_2:65612607-65612626 | None:intergenic | 35.0% | |
| ! | GAATGAAGCCTTGTATGTTT+AGG | - | chr2_2:65612690-65612709 | Msa0265340:CDS | 35.0% |
| AACAGCGACAAAACACTGTT+CGG | - | chr2_2:65610352-65610371 | Msa0265340:three_prime_UTR | 40.0% | |
| TGTTTCTCGTCATCACGTTT+CGG | - | chr2_2:65610408-65610427 | Msa0265340:three_prime_UTR | 40.0% | |
| AATCAGACTCGTTGTTGAGT+TGG | + | chr2_2:65610435-65610454 | None:intergenic | 40.0% | |
| TCATTGGAAGAAACCCTATC+TGG | - | chr2_2:65610482-65610501 | Msa0265340:three_prime_UTR | 40.0% | |
| CATTGGAAGAAACCCTATCT+GGG | - | chr2_2:65610483-65610502 | Msa0265340:three_prime_UTR | 40.0% | |
| ! | GAAATGGGTCATTTGGAACT+TGG | - | chr2_2:65610550-65610569 | Msa0265340:CDS | 40.0% |
| ! | GCCAATGACATTTTCTTAGC+AGG | - | chr2_2:65610865-65610884 | Msa0265340:CDS | 40.0% |
| !! | GCTATTTTCACAAGCTATCC+TGG | + | chr2_2:65611045-65611064 | None:intergenic | 40.0% |
| !! | GCTATTTTCACAAGCTAGCA+TGG | + | chr2_2:65611161-65611180 | None:intergenic | 40.0% |
| ACTTAGATTTAGGCCCTGTT+AGG | + | chr2_2:65611302-65611321 | None:intergenic | 40.0% | |
| ATCCTGCTTTCCTCTTTAGT+TGG | - | chr2_2:65611474-65611493 | Msa0265340:intron | 40.0% | |
| AACCAACTAAAGAGGAAAGC+AGG | + | chr2_2:65611479-65611498 | None:intergenic | 40.0% | |
| TGAGTTTGACCAGTATCCAA+AGG | - | chr2_2:65612098-65612117 | Msa0265340:intron | 40.0% | |
| GAGTTTGACCAGTATCCAAA+GGG | - | chr2_2:65612099-65612118 | Msa0265340:intron | 40.0% | |
| TCATCCTCACTTTCTTTGCT+AGG | + | chr2_2:65612168-65612187 | None:intergenic | 40.0% | |
| TAGCAAAGAAAGTGAGGATG+AGG | - | chr2_2:65612167-65612186 | Msa0265340:intron | 40.0% | |
| ! | TGAGGATGAGGATGATTTTG+AGG | - | chr2_2:65612179-65612198 | Msa0265340:intron | 40.0% |
| ! | TGGTGATAGTGACGATGATA+AGG | - | chr2_2:65612263-65612282 | Msa0265340:intron | 40.0% |
| !! | AAGGAACTTGTTGCTAAGGT+TGG | - | chr2_2:65612282-65612301 | Msa0265340:intron | 40.0% |
| !! | AGGAACTTGTTGCTAAGGTT+GGG | - | chr2_2:65612283-65612302 | Msa0265340:intron | 40.0% |
| TTGGGAAAGGTAAGAAACCT+AGG | - | chr2_2:65612301-65612320 | Msa0265340:intron | 40.0% | |
| GCAAGGTCTAAAGACAATAG+AGG | - | chr2_2:65612330-65612349 | Msa0265340:intron | 40.0% | |
| TGATGAAGAAGATGAGGATG+AGG | - | chr2_2:65612449-65612468 | Msa0265340:CDS | 40.0% | |
| ATATCAACATCACAAGGCCA+CGG | + | chr2_2:65612601-65612620 | None:intergenic | 40.0% | |
| ! | TGTCTGCGAAAACACCCTTT+TGG | - | chr2_2:65610587-65610606 | Msa0265340:CDS | 45.0% |
| TGTGGCTGTGTAACCTTCTA+AGG | - | chr2_2:65611909-65611928 | Msa0265340:intron | 45.0% | |
| GTGGCTGTGTAACCTTCTAA+GGG | - | chr2_2:65611910-65611929 | Msa0265340:intron | 45.0% | |
| ! | AGTATCCAAAGGGCATGATC+CGG | - | chr2_2:65612109-65612128 | Msa0265340:intron | 45.0% |
| TGATCCGGAATGTGGAGAAT+TGG | - | chr2_2:65612124-65612143 | Msa0265340:intron | 45.0% | |
| GATCCGGAATGTGGAGAATT+GGG | - | chr2_2:65612125-65612144 | Msa0265340:intron | 45.0% | |
| ACTCCCAATTCTCCACATTC+CGG | + | chr2_2:65612131-65612150 | None:intergenic | 45.0% | |
| GAGACAACAAAGATGACGAG+TGG | - | chr2_2:65612238-65612257 | Msa0265340:intron | 45.0% | |
| AACAAAGATGACGAGTGGAC+TGG | - | chr2_2:65612243-65612262 | Msa0265340:intron | 45.0% | |
| CTTGTTGCTAAGGTTGGGAA+AGG | - | chr2_2:65612288-65612307 | Msa0265340:intron | 45.0% | |
| TGACAATGAGGATGAGGAAG+AGG | - | chr2_2:65612482-65612501 | Msa0265340:CDS | 45.0% | |
| AGAAGATGACGATGATGCTG+TGG | - | chr2_2:65612527-65612546 | Msa0265340:CDS | 45.0% | |
| CTGTGGCGGTGTAAAATCAA+GGG | - | chr2_2:65612544-65612563 | Msa0265340:CDS | 45.0% | |
| TGTGGCGGTGTAAAATCAAG+GGG | - | chr2_2:65612545-65612564 | Msa0265340:CDS | 45.0% | |
| ! | TGTTTAGATACCAAGTGCCG+TGG | - | chr2_2:65612581-65612600 | Msa0265340:CDS | 45.0% |
| ATGGAGTTCGAAGGCGAAGA+TGG | - | chr2_2:65610310-65610329 | Msa0265340:three_prime_UTR | 50.0% | |
| GACAAAACACTGTTCGGACG+AGG | - | chr2_2:65610358-65610377 | Msa0265340:three_prime_UTR | 50.0% | |
| ! | CGTGATGACGAGAAACAGTG+TGG | + | chr2_2:65610405-65610424 | None:intergenic | 50.0% |
| GTCTGATTCAGAGCCTCCTA+AGG | - | chr2_2:65610447-65610466 | Msa0265340:three_prime_UTR | 50.0% | |
| GGATCATGCCCTTTGGATAC+TGG | + | chr2_2:65612110-65612129 | None:intergenic | 50.0% | |
| ACATTCCGGATCATGCCCTT+TGG | + | chr2_2:65612117-65612136 | None:intergenic | 50.0% | |
| ! | AAAGGGCATGATCCGGAATG+TGG | - | chr2_2:65612116-65612135 | Msa0265340:intron | 50.0% |
| GGAATGTGGAGAATTGGGAG+TGG | - | chr2_2:65612130-65612149 | Msa0265340:intron | 50.0% | |
| GAATTGGGAGTGGTTTCTCG+AGG | - | chr2_2:65612140-65612159 | Msa0265340:intron | 50.0% | |
| GGAGCCTAGCAAAGAAAGTG+AGG | - | chr2_2:65612161-65612180 | Msa0265340:intron | 50.0% | |
| AGAAACCTAGGTACTCCGCA+AGG | - | chr2_2:65612313-65612332 | Msa0265340:intron | 50.0% | |
| ! | TTAGACCTTGCGGAGTACCT+AGG | + | chr2_2:65612321-65612340 | None:intergenic | 50.0% |
| GATGACGATGATGAGACGCT+AGG | - | chr2_2:65612411-65612430 | Msa0265340:CDS | 50.0% | |
| TGAGGATGAGGAAGAGGAAG+AGG | - | chr2_2:65612488-65612507 | Msa0265340:CDS | 50.0% | |
| AGATGACGATGATGCTGTGG+CGG | - | chr2_2:65612530-65612549 | Msa0265340:CDS | 50.0% | |
| GCTGTGGCGGTGTAAAATCA+AGG | - | chr2_2:65612543-65612562 | Msa0265340:CDS | 50.0% | |
| GTGGCGGTGTAAAATCAAGG+GGG | - | chr2_2:65612546-65612565 | Msa0265340:CDS | 50.0% | |
| ACACTGTTCGGACGAGGTTG+CGG | - | chr2_2:65610364-65610383 | Msa0265340:three_prime_UTR | 55.0% | |
| GACGATGATGAGACGCTAGG+AGG | - | chr2_2:65612414-65612433 | Msa0265340:CDS | 55.0% | |
| GGATGAGGAAGAGGAAGAGG+AGG | - | chr2_2:65612491-65612510 | Msa0265340:CDS | 55.0% | |
| TGAGGAAGAGGAAGAGGAGG+AGG | - | chr2_2:65612494-65612513 | Msa0265340:CDS | 55.0% | |
| CATCACAAGGCCACGGCACT+TGG | + | chr2_2:65612594-65612613 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 65610261 | 65612800 | 65610261 | ID=Msa0265340;Name=Msa0265340 |
| chr2_2 | mRNA | 65610261 | 65612800 | 65610261 | ID=Msa0265340-mRNA-1;Parent=Msa0265340;Name=Msa0265340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=49|1|1|1|1|1|2|243|288 |
| chr2_2 | exon | 65610261 | 65610988 | 65610261 | ID=Msa0265340-mRNA-1:exon:20694;Parent=Msa0265340-mRNA-1 |
| chr2_2 | exon | 65612370 | 65612800 | 65612370 | ID=Msa0265340-mRNA-1:exon:20693;Parent=Msa0265340-mRNA-1 |
| chr2_2 | five_prime_UTR | 65612752 | 65612800 | 65612752 | ID=Msa0265340-mRNA-1:five_prime_utr;Parent=Msa0265340-mRNA-1 |
| chr2_2 | CDS | 65612370 | 65612751 | 65612370 | ID=Msa0265340-mRNA-1:cds;Parent=Msa0265340-mRNA-1 |
| chr2_2 | CDS | 65610504 | 65610988 | 65610504 | ID=Msa0265340-mRNA-1:cds;Parent=Msa0265340-mRNA-1 |
| chr2_2 | three_prime_UTR | 65610261 | 65610503 | 65610261 | ID=Msa0265340-mRNA-1:three_prime_utr;Parent=Msa0265340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
