AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1295110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295110 MtrunA17_Chr8g0372661 89.326 178 0 1 4 162 54 231 1.00e-109 311
Msa1295110 MtrunA17_Chr1g0207631 41.549 142 81 2 21 162 74 213 6.17e-31 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295110 AT5G66410.1 70.621 177 32 2 4 160 54 230 5.44e-77 229
Msa1295110 AT3G50960.2 68.362 177 36 2 4 160 54 230 7.25e-73 218
Msa1295110 AT3G50960.1 68.362 177 36 2 4 160 54 230 7.25e-73 218
Msa1295110 AT2G18990.1 40.714 140 82 1 21 160 73 211 1.49e-32 115
Msa1295110 AT3G25580.1 41.429 140 80 2 21 160 73 210 1.97e-32 115
Msa1295110 AT3G25580.2 41.429 140 80 2 21 160 68 205 2.44e-32 114

Find 37 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTTGCTTATAACTTATA+AGG 0.159288 8_3:+53152401 Msa1295110:three_prime_UTR
AACATTTGACAACCTTAAAA+AGG 0.224036 8_3:-53152506 None:intergenic
ACCGTTCTTCGTTGCAAAAT+TGG 0.283531 8_3:+53151676 Msa1295110:CDS
AATATATGCTTTCAGGATAA+TGG 0.300467 8_3:+53151439 Msa1295110:intron
TGCCTTGTGTCATACTGTTC+AGG 0.310619 8_3:+53151711 Msa1295110:CDS
TTGGTAGGGTTTCAAGATCT+TGG 0.323322 8_3:+53152036 Msa1295110:CDS
CCAGAAATCCAAAAGGATAT+TGG 0.334196 8_3:-53152353 None:intergenic
ATCAATATGCTTTGTTGAAA+GGG 0.348912 8_3:-53151477 None:intergenic
GGTAACTGAAGGGGATTTCT+TGG 0.349950 8_3:+53151258 Msa1295110:intron
TGTTTGCTTATAACTTATAA+GGG 0.364510 8_3:+53152402 Msa1295110:three_prime_UTR
GTTGCAGTAGATAGATTGGT+AGG 0.401977 8_3:+53152021 Msa1295110:CDS
GATTTCTTGGGTGAAGTCAC+TGG 0.418247 8_3:+53151271 Msa1295110:CDS
GATTTGTCATTTCTATCATA+AGG 0.426365 8_3:+53151306 Msa1295110:CDS
TATCAATATGCTTTGTTGAA+AGG 0.446459 8_3:-53151478 None:intergenic
AGGAGTTGCAGTAGATAGAT+TGG 0.446681 8_3:+53152017 Msa1295110:CDS
CAGAACCTCCAGTGCTCTTG+TGG 0.459386 8_3:-53152076 None:intergenic
GTAACTGAAGGGGATTTCTT+GGG 0.475841 8_3:+53151259 Msa1295110:CDS
TCTGATTAAAATGAATCATC+CGG 0.477901 8_3:+53152293 Msa1295110:exon
GTGATGTCAGGATCCTGAAT+TGG 0.484812 8_3:+53150844 Msa1295110:intron
ATATTGATACAAAGTTCATC+AGG 0.487438 8_3:+53151492 Msa1295110:CDS
TTGCAGTAGATAGATTGGTA+GGG 0.514893 8_3:+53152022 Msa1295110:CDS
TATTTCTTTCATGATGCCGC+CGG 0.544507 8_3:-53152312 None:intergenic
GAGGTTCTGCTGATAAAGAA+AGG 0.554204 8_3:+53152090 Msa1295110:CDS
GTTCATCAGGCTTGATGCAG+AGG 0.554580 8_3:+53151505 Msa1295110:CDS
ATACAAGCCAGAAATCCAAA+AGG 0.576612 8_3:-53152360 None:intergenic
AGCTTCATTTGTAACGAAGG+AGG 0.585402 8_3:+53152533 Msa1295110:three_prime_UTR
AGCAGCCGCTGAAGATCTAA+CGG 0.588057 8_3:-53152255 None:intergenic
AATTTAGAGAGGTAACTGAA+GGG 0.589625 8_3:+53151248 Msa1295110:intron
GAATTTAGAGAGGTAACTGA+AGG 0.591103 8_3:+53151247 Msa1295110:intron
ATTTAGAGAGGTAACTGAAG+GGG 0.604140 8_3:+53151249 Msa1295110:intron
GTAAAAGGGCATACTTGCAT+CGG 0.607611 8_3:-53151336 None:intergenic
GAGAGCTTCATTTGTAACGA+AGG 0.615294 8_3:+53152530 Msa1295110:three_prime_UTR
AGTGGTGTTACACTCTACCT+AGG 0.616902 8_3:-53152473 None:intergenic
GCATCATGAAAGAAATAGAG+TGG 0.625135 8_3:+53152318 Msa1295110:three_prime_UTR
CACCTGAACAGTATGACACA+AGG 0.641883 8_3:-53151713 None:intergenic
TAGATCCGTTAGATCTTCAG+CGG 0.680937 8_3:+53152250 Msa1295110:CDS
GATTAAAATGAATCATCCGG+CGG 0.703315 8_3:+53152296 Msa1295110:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATCAATTTAATTAACT+AGG + chr8_3:53151975-53151994 Msa1295110:intron 10.0%
!! TATATCAATTTAATTAACTA+GGG + chr8_3:53151976-53151995 Msa1295110:intron 10.0%
!! TTATATCAATTTAATTAACT+AGG + chr8_3:53151975-53151994 Msa1295110:intron 10.0%
!! TATATCAATTTAATTAACTA+GGG + chr8_3:53151976-53151995 Msa1295110:intron 10.0%
!! ATATTTGCATTAAAATCATA+TGG - chr8_3:53151601-53151620 None:intergenic 15.0%
!! AAAGATTAAATATTCTCTTT+AGG - chr8_3:53151828-53151847 None:intergenic 15.0%
!!! ATATCATTTTTATTTAGAAG+GGG - chr8_3:53151859-53151878 None:intergenic 15.0%
!!! GATATCATTTTTATTTAGAA+GGG - chr8_3:53151860-53151879 None:intergenic 15.0%
!!! AGATATCATTTTTATTTAGA+AGG - chr8_3:53151861-53151880 None:intergenic 15.0%
!! ATATTTGCATTAAAATCATA+TGG - chr8_3:53151601-53151620 None:intergenic 15.0%
!! AAAGATTAAATATTCTCTTT+AGG - chr8_3:53151828-53151847 None:intergenic 15.0%
!!! ATATCATTTTTATTTAGAAG+GGG - chr8_3:53151859-53151878 None:intergenic 15.0%
!!! GATATCATTTTTATTTAGAA+GGG - chr8_3:53151860-53151879 None:intergenic 15.0%
!!! AGATATCATTTTTATTTAGA+AGG - chr8_3:53151861-53151880 None:intergenic 15.0%
!!! AAAATATATAAGGCATTCTT+GGG - chr8_3:53150728-53150747 None:intergenic 20.0%
!!! TAAAATATATAAGGCATTCT+TGG - chr8_3:53150729-53150748 None:intergenic 20.0%
!! AAACCTTAAATCAGAATAAT+GGG - chr8_3:53150814-53150833 None:intergenic 20.0%
!! TAAACCTTAAATCAGAATAA+TGG - chr8_3:53150815-53150834 None:intergenic 20.0%
!! AGGTATTCTATATATAAAAG+GGG - chr8_3:53150965-53150984 None:intergenic 20.0%
!!! GAGGTATTCTATATATAAAA+GGG - chr8_3:53150966-53150985 None:intergenic 20.0%
!! AAATATAATCATGAATAACG+AGG - chr8_3:53150985-53151004 None:intergenic 20.0%
!! TTCAATGAACAATAGTAAAA+GGG - chr8_3:53151353-53151372 None:intergenic 20.0%
!! ATTCAATGAACAATAGTAAA+AGG - chr8_3:53151354-53151373 None:intergenic 20.0%
!!! CTTTTACTTCTTGAATTTTT+CGG + chr8_3:53151747-53151766 Msa1295110:intron 20.0%
!! TTGTTTGCTTATAACTTATA+AGG + chr8_3:53152401-53152420 Msa1295110:three_prime_UTR 20.0%
!! TGTTTGCTTATAACTTATAA+GGG + chr8_3:53152402-53152421 Msa1295110:three_prime_UTR 20.0%
!!! TTTTAATGTATTACATTCCT+AGG + chr8_3:53152427-53152446 Msa1295110:three_prime_UTR 20.0%
!! AAAAAATGTATTACATTCCT+AGG + chr8_3:53152456-53152475 Msa1295110:three_prime_UTR 20.0%
!!! AAAATATATAAGGCATTCTT+GGG - chr8_3:53150728-53150747 None:intergenic 20.0%
!!! TAAAATATATAAGGCATTCT+TGG - chr8_3:53150729-53150748 None:intergenic 20.0%
!! AAACCTTAAATCAGAATAAT+GGG - chr8_3:53150814-53150833 None:intergenic 20.0%
!! TAAACCTTAAATCAGAATAA+TGG - chr8_3:53150815-53150834 None:intergenic 20.0%
!! AGGTATTCTATATATAAAAG+GGG - chr8_3:53150965-53150984 None:intergenic 20.0%
!!! GAGGTATTCTATATATAAAA+GGG - chr8_3:53150966-53150985 None:intergenic 20.0%
!! AAATATAATCATGAATAACG+AGG - chr8_3:53150985-53151004 None:intergenic 20.0%
!! TTCAATGAACAATAGTAAAA+GGG - chr8_3:53151353-53151372 None:intergenic 20.0%
!! ATTCAATGAACAATAGTAAA+AGG - chr8_3:53151354-53151373 None:intergenic 20.0%
!!! CTTTTACTTCTTGAATTTTT+CGG + chr8_3:53151747-53151766 Msa1295110:intron 20.0%
!! TTGTTTGCTTATAACTTATA+AGG + chr8_3:53152401-53152420 Msa1295110:three_prime_UTR 20.0%
!! TGTTTGCTTATAACTTATAA+GGG + chr8_3:53152402-53152421 Msa1295110:three_prime_UTR 20.0%
!!! TTTTAATGTATTACATTCCT+AGG + chr8_3:53152427-53152446 Msa1295110:three_prime_UTR 20.0%
!! AAAAAATGTATTACATTCCT+AGG + chr8_3:53152456-53152475 Msa1295110:three_prime_UTR 20.0%
! ATACCCATTATTCTGATTTA+AGG + chr8_3:53150808-53150827 Msa1295110:intron 25.0%
!! CGAGGTATTCTATATATAAA+AGG - chr8_3:53150967-53150986 None:intergenic 25.0%
!! GATTTGTCATTTCTATCATA+AGG + chr8_3:53151306-53151325 Msa1295110:CDS 25.0%
! CATATATTGATACAACACAA+AGG - chr8_3:53151427-53151446 None:intergenic 25.0%
! TTGTATCAATATATGCTTTC+AGG + chr8_3:53151432-53151451 Msa1295110:intron 25.0%
! AATATATGCTTTCAGGATAA+TGG + chr8_3:53151439-53151458 Msa1295110:intron 25.0%
!! ATCAATATGCTTTGTTGAAA+GGG - chr8_3:53151480-53151499 None:intergenic 25.0%
!! TATCAATATGCTTTGTTGAA+AGG - chr8_3:53151481-53151500 None:intergenic 25.0%
! ATATTGATACAAAGTTCATC+AGG + chr8_3:53151492-53151511 Msa1295110:CDS 25.0%
!!! TTTTTTAACTGTCATTTGAC+AGG + chr8_3:53152167-53152186 Msa1295110:intron 25.0%
! TCTGATTAAAATGAATCATC+CGG + chr8_3:53152293-53152312 Msa1295110:exon 25.0%
!!! ATACATTTTTTAGCAAACCT+AGG - chr8_3:53152447-53152466 None:intergenic 25.0%
! AACATTTGACAACCTTAAAA+AGG - chr8_3:53152509-53152528 None:intergenic 25.0%
!!! TTTTTAAGGTTGTCAAATGT+TGG + chr8_3:53152508-53152527 Msa1295110:three_prime_UTR 25.0%
! ATACCCATTATTCTGATTTA+AGG + chr8_3:53150808-53150827 Msa1295110:intron 25.0%
!! CGAGGTATTCTATATATAAA+AGG - chr8_3:53150967-53150986 None:intergenic 25.0%
!! GATTTGTCATTTCTATCATA+AGG + chr8_3:53151306-53151325 Msa1295110:CDS 25.0%
! CATATATTGATACAACACAA+AGG - chr8_3:53151427-53151446 None:intergenic 25.0%
! TTGTATCAATATATGCTTTC+AGG + chr8_3:53151432-53151451 Msa1295110:intron 25.0%
! AATATATGCTTTCAGGATAA+TGG + chr8_3:53151439-53151458 Msa1295110:intron 25.0%
!! ATCAATATGCTTTGTTGAAA+GGG - chr8_3:53151480-53151499 None:intergenic 25.0%
!! TATCAATATGCTTTGTTGAA+AGG - chr8_3:53151481-53151500 None:intergenic 25.0%
! ATATTGATACAAAGTTCATC+AGG + chr8_3:53151492-53151511 Msa1295110:CDS 25.0%
!!! TTTTTTAACTGTCATTTGAC+AGG + chr8_3:53152167-53152186 Msa1295110:intron 25.0%
! TCTGATTAAAATGAATCATC+CGG + chr8_3:53152293-53152312 Msa1295110:exon 25.0%
!!! ATACATTTTTTAGCAAACCT+AGG - chr8_3:53152447-53152466 None:intergenic 25.0%
! AACATTTGACAACCTTAAAA+AGG - chr8_3:53152509-53152528 None:intergenic 25.0%
!!! TTTTTAAGGTTGTCAAATGT+TGG + chr8_3:53152508-53152527 Msa1295110:three_prime_UTR 25.0%
TTATGTACAATTGTGATGTC+AGG + chr8_3:53150832-53150851 Msa1295110:intron 30.0%
AATTTAGAGAGGTAACTGAA+GGG + chr8_3:53151248-53151267 Msa1295110:intron 30.0%
! ATTGTTACTTCACATGTCAA+GGG - chr8_3:53151394-53151413 None:intergenic 30.0%
! AATTGTTACTTCACATGTCA+AGG - chr8_3:53151395-53151414 None:intergenic 30.0%
AAGTCTAAAAAACAGATGAG+TGG + chr8_3:53151792-53151811 Msa1295110:intron 30.0%
! AAAACGCTGCTTGTTAAATA+AGG + chr8_3:53151938-53151957 Msa1295110:intron 30.0%
TAACAAATGAAAAGGAATGG+AGG - chr8_3:53152132-53152151 None:intergenic 30.0%
CACTAACAAATGAAAAGGAA+TGG - chr8_3:53152135-53152154 None:intergenic 30.0%
AGACACACTAACAAATGAAA+AGG - chr8_3:53152140-53152159 None:intergenic 30.0%
!! TTTTCATTTGTTAGTGTGTC+TGG + chr8_3:53152139-53152158 Msa1295110:intron 30.0%
!!! TTCATCCACATCTTTTTTCT+CGG - chr8_3:53152201-53152220 None:intergenic 30.0%
! TGTTTTGTCCAATATCCTTT+TGG + chr8_3:53152345-53152364 Msa1295110:three_prime_UTR 30.0%
TAAAAAGGTTCATACAGAAG+TGG - chr8_3:53152494-53152513 None:intergenic 30.0%
! CTTCTGTATGAACCTTTTTA+AGG + chr8_3:53152494-53152513 Msa1295110:three_prime_UTR 30.0%
TTATGTACAATTGTGATGTC+AGG + chr8_3:53150832-53150851 Msa1295110:intron 30.0%
AATTTAGAGAGGTAACTGAA+GGG + chr8_3:53151248-53151267 Msa1295110:intron 30.0%
! ATTGTTACTTCACATGTCAA+GGG - chr8_3:53151394-53151413 None:intergenic 30.0%
! AATTGTTACTTCACATGTCA+AGG - chr8_3:53151395-53151414 None:intergenic 30.0%
AAGTCTAAAAAACAGATGAG+TGG + chr8_3:53151792-53151811 Msa1295110:intron 30.0%
! AAAACGCTGCTTGTTAAATA+AGG + chr8_3:53151938-53151957 Msa1295110:intron 30.0%
TAACAAATGAAAAGGAATGG+AGG - chr8_3:53152132-53152151 None:intergenic 30.0%
CACTAACAAATGAAAAGGAA+TGG - chr8_3:53152135-53152154 None:intergenic 30.0%
AGACACACTAACAAATGAAA+AGG - chr8_3:53152140-53152159 None:intergenic 30.0%
!! TTTTCATTTGTTAGTGTGTC+TGG + chr8_3:53152139-53152158 Msa1295110:intron 30.0%
!!! TTCATCCACATCTTTTTTCT+CGG - chr8_3:53152201-53152220 None:intergenic 30.0%
! TGTTTTGTCCAATATCCTTT+TGG + chr8_3:53152345-53152364 Msa1295110:three_prime_UTR 30.0%
TAAAAAGGTTCATACAGAAG+TGG - chr8_3:53152494-53152513 None:intergenic 30.0%
! CTTCTGTATGAACCTTTTTA+AGG + chr8_3:53152494-53152513 Msa1295110:three_prime_UTR 30.0%
! GCATGCAATTTTTCCAATTC+AGG - chr8_3:53150860-53150879 None:intergenic 35.0%
ATGATGCATCCTTGTATGTA+TGG - chr8_3:53150915-53150934 None:intergenic 35.0%
AAAGAAAAATTAGTGCCCCT+GGG - chr8_3:53151169-53151188 None:intergenic 35.0%
TATAGAGAGAAGCAGAGAAA+CGG + chr8_3:53151197-53151216 Msa1295110:intron 35.0%
GAATTTAGAGAGGTAACTGA+AGG + chr8_3:53151247-53151266 Msa1295110:intron 35.0%
ATTTAGAGAGGTAACTGAAG+GGG + chr8_3:53151249-53151268 Msa1295110:intron 35.0%
! TGAAGCTAATTGTTGCTTCA+TGG + chr8_3:53151893-53151912 Msa1295110:intron 35.0%
! TAATTGTTGCTTCATGGTAG+TGG + chr8_3:53151899-53151918 Msa1295110:intron 35.0%
!!! GGTGTTTCTTTTTTCAGACA+AGG + chr8_3:53151997-53152016 Msa1295110:intron 35.0%
TTGCAGTAGATAGATTGGTA+GGG + chr8_3:53152022-53152041 Msa1295110:CDS 35.0%
TATTGCCGAGAAAAAAGATG+TGG + chr8_3:53152193-53152212 Msa1295110:CDS 35.0%
GATTAAAATGAATCATCCGG+CGG + chr8_3:53152296-53152315 Msa1295110:exon 35.0%
GCATCATGAAAGAAATAGAG+TGG + chr8_3:53152318-53152337 Msa1295110:three_prime_UTR 35.0%
CCAGAAATCCAAAAGGATAT+TGG - chr8_3:53152356-53152375 None:intergenic 35.0%
! CCAATATCCTTTTGGATTTC+TGG + chr8_3:53152353-53152372 Msa1295110:three_prime_UTR 35.0%
ATACAAGCCAGAAATCCAAA+AGG - chr8_3:53152363-53152382 None:intergenic 35.0%
! GCATGCAATTTTTCCAATTC+AGG - chr8_3:53150860-53150879 None:intergenic 35.0%
ATGATGCATCCTTGTATGTA+TGG - chr8_3:53150915-53150934 None:intergenic 35.0%
AAAGAAAAATTAGTGCCCCT+GGG - chr8_3:53151169-53151188 None:intergenic 35.0%
TATAGAGAGAAGCAGAGAAA+CGG + chr8_3:53151197-53151216 Msa1295110:intron 35.0%
GAATTTAGAGAGGTAACTGA+AGG + chr8_3:53151247-53151266 Msa1295110:intron 35.0%
ATTTAGAGAGGTAACTGAAG+GGG + chr8_3:53151249-53151268 Msa1295110:intron 35.0%
! TGAAGCTAATTGTTGCTTCA+TGG + chr8_3:53151893-53151912 Msa1295110:intron 35.0%
! TAATTGTTGCTTCATGGTAG+TGG + chr8_3:53151899-53151918 Msa1295110:intron 35.0%
!!! GGTGTTTCTTTTTTCAGACA+AGG + chr8_3:53151997-53152016 Msa1295110:intron 35.0%
TTGCAGTAGATAGATTGGTA+GGG + chr8_3:53152022-53152041 Msa1295110:CDS 35.0%
TATTGCCGAGAAAAAAGATG+TGG + chr8_3:53152193-53152212 Msa1295110:CDS 35.0%
GATTAAAATGAATCATCCGG+CGG + chr8_3:53152296-53152315 Msa1295110:exon 35.0%
GCATCATGAAAGAAATAGAG+TGG + chr8_3:53152318-53152337 Msa1295110:three_prime_UTR 35.0%
CCAGAAATCCAAAAGGATAT+TGG - chr8_3:53152356-53152375 None:intergenic 35.0%
! CCAATATCCTTTTGGATTTC+TGG + chr8_3:53152353-53152372 Msa1295110:three_prime_UTR 35.0%
ATACAAGCCAGAAATCCAAA+AGG - chr8_3:53152363-53152382 None:intergenic 35.0%
TGGAAAAATTGCATGCAGAC+AGG + chr8_3:53150864-53150883 Msa1295110:CDS 40.0%
! AGACAGGATTGCAGCTTTTA+AGG + chr8_3:53150880-53150899 Msa1295110:CDS 40.0%
TAGTGACCTCCATACATACA+AGG + chr8_3:53150903-53150922 Msa1295110:intron 40.0%
ATGCATCCTTGTATGTATGG+AGG - chr8_3:53150912-53150931 None:intergenic 40.0%
TATTGCTAACTAGTGCCTCT+GGG + chr8_3:53151020-53151039 Msa1295110:intron 40.0%
TTTCCTTAACTAATGCCCCA+GGG + chr8_3:53151150-53151169 Msa1295110:intron 40.0%
AAGAAAAATTAGTGCCCCTG+GGG - chr8_3:53151168-53151187 None:intergenic 40.0%
CAAAGAAAAATTAGTGCCCC+TGG - chr8_3:53151170-53151189 None:intergenic 40.0%
ATAGAGAGAAGCAGAGAAAC+GGG + chr8_3:53151198-53151217 Msa1295110:intron 40.0%
AGGTCATGGTGAATTTAGAG+AGG + chr8_3:53151237-53151256 Msa1295110:intron 40.0%
GTAACTGAAGGGGATTTCTT+GGG + chr8_3:53151259-53151278 Msa1295110:CDS 40.0%
! GTAAAAGGGCATACTTGCAT+CGG - chr8_3:53151339-53151358 None:intergenic 40.0%
TTACTTCACATGTCAAGGGA+TGG - chr8_3:53151390-53151409 None:intergenic 40.0%
ACCGTTCTTCGTTGCAAAAT+TGG + chr8_3:53151676-53151695 Msa1295110:CDS 40.0%
! GCCAATTTTGCAACGAAGAA+CGG - chr8_3:53151680-53151699 None:intergenic 40.0%
!!! AGCAGCGTTTTATTTTAGCC+AGG - chr8_3:53151929-53151948 None:intergenic 40.0%
AGGAGTTGCAGTAGATAGAT+TGG + chr8_3:53152017-53152036 Msa1295110:CDS 40.0%
GTTGCAGTAGATAGATTGGT+AGG + chr8_3:53152021-53152040 Msa1295110:CDS 40.0%
TTGGTAGGGTTTCAAGATCT+TGG + chr8_3:53152036-53152055 Msa1295110:CDS 40.0%
GAGGTTCTGCTGATAAAGAA+AGG + chr8_3:53152090-53152109 Msa1295110:CDS 40.0%
TAGATCCGTTAGATCTTCAG+CGG + chr8_3:53152250-53152269 Msa1295110:CDS 40.0%
TATTTCTTTCATGATGCCGC+CGG - chr8_3:53152315-53152334 None:intergenic 40.0%
GAGAGCTTCATTTGTAACGA+AGG + chr8_3:53152530-53152549 Msa1295110:three_prime_UTR 40.0%
AGCTTCATTTGTAACGAAGG+AGG + chr8_3:53152533-53152552 Msa1295110:three_prime_UTR 40.0%
TGGAAAAATTGCATGCAGAC+AGG + chr8_3:53150864-53150883 Msa1295110:CDS 40.0%
! AGACAGGATTGCAGCTTTTA+AGG + chr8_3:53150880-53150899 Msa1295110:CDS 40.0%
TAGTGACCTCCATACATACA+AGG + chr8_3:53150903-53150922 Msa1295110:intron 40.0%
ATGCATCCTTGTATGTATGG+AGG - chr8_3:53150912-53150931 None:intergenic 40.0%
TATTGCTAACTAGTGCCTCT+GGG + chr8_3:53151020-53151039 Msa1295110:intron 40.0%
TTTCCTTAACTAATGCCCCA+GGG + chr8_3:53151150-53151169 Msa1295110:intron 40.0%
AAGAAAAATTAGTGCCCCTG+GGG - chr8_3:53151168-53151187 None:intergenic 40.0%
CAAAGAAAAATTAGTGCCCC+TGG - chr8_3:53151170-53151189 None:intergenic 40.0%
ATAGAGAGAAGCAGAGAAAC+GGG + chr8_3:53151198-53151217 Msa1295110:intron 40.0%
AGGTCATGGTGAATTTAGAG+AGG + chr8_3:53151237-53151256 Msa1295110:intron 40.0%
GTAACTGAAGGGGATTTCTT+GGG + chr8_3:53151259-53151278 Msa1295110:CDS 40.0%
! GTAAAAGGGCATACTTGCAT+CGG - chr8_3:53151339-53151358 None:intergenic 40.0%
TTACTTCACATGTCAAGGGA+TGG - chr8_3:53151390-53151409 None:intergenic 40.0%
ACCGTTCTTCGTTGCAAAAT+TGG + chr8_3:53151676-53151695 Msa1295110:CDS 40.0%
! GCCAATTTTGCAACGAAGAA+CGG - chr8_3:53151680-53151699 None:intergenic 40.0%
!!! AGCAGCGTTTTATTTTAGCC+AGG - chr8_3:53151929-53151948 None:intergenic 40.0%
AGGAGTTGCAGTAGATAGAT+TGG + chr8_3:53152017-53152036 Msa1295110:CDS 40.0%
GTTGCAGTAGATAGATTGGT+AGG + chr8_3:53152021-53152040 Msa1295110:CDS 40.0%
TTGGTAGGGTTTCAAGATCT+TGG + chr8_3:53152036-53152055 Msa1295110:CDS 40.0%
GAGGTTCTGCTGATAAAGAA+AGG + chr8_3:53152090-53152109 Msa1295110:CDS 40.0%
TAGATCCGTTAGATCTTCAG+CGG + chr8_3:53152250-53152269 Msa1295110:CDS 40.0%
TATTTCTTTCATGATGCCGC+CGG - chr8_3:53152315-53152334 None:intergenic 40.0%
GAGAGCTTCATTTGTAACGA+AGG + chr8_3:53152530-53152549 Msa1295110:three_prime_UTR 40.0%
AGCTTCATTTGTAACGAAGG+AGG + chr8_3:53152533-53152552 Msa1295110:three_prime_UTR 40.0%
GTGATGTCAGGATCCTGAAT+TGG + chr8_3:53150844-53150863 Msa1295110:intron 45.0%
CTATTGCTAACTAGTGCCTC+TGG + chr8_3:53151019-53151038 Msa1295110:intron 45.0%
ATTGCTAACTAGTGCCTCTG+GGG + chr8_3:53151021-53151040 Msa1295110:intron 45.0%
TTTCTTAACTAGTGCCCCAG+AGG - chr8_3:53151038-53151057 None:intergenic 45.0%
GTTTCCTTAACTAATGCCCC+AGG + chr8_3:53151149-53151168 Msa1295110:intron 45.0%
TTCCTTAACTAATGCCCCAG+GGG + chr8_3:53151151-53151170 Msa1295110:intron 45.0%
GCATGGAAGAAGAAAGGTCA+TGG + chr8_3:53151223-53151242 Msa1295110:intron 45.0%
GGTAACTGAAGGGGATTTCT+TGG + chr8_3:53151258-53151277 Msa1295110:intron 45.0%
GATTTCTTGGGTGAAGTCAC+TGG + chr8_3:53151271-53151290 Msa1295110:CDS 45.0%
TGCCTTGTGTCATACTGTTC+AGG + chr8_3:53151711-53151730 Msa1295110:CDS 45.0%
CACCTGAACAGTATGACACA+AGG - chr8_3:53151716-53151735 None:intergenic 45.0%
TGTGTCATACTGTTCAGGTG+AGG + chr8_3:53151716-53151735 Msa1295110:intron 45.0%
!! CGATTTTTCCACAAGAGCAC+TGG + chr8_3:53152068-53152087 Msa1295110:CDS 45.0%
!!! TTTTTCCACAAGAGCACTGG+AGG + chr8_3:53152071-53152090 Msa1295110:CDS 45.0%
!! AGTGGTGTTACACTCTACCT+AGG - chr8_3:53152476-53152495 None:intergenic 45.0%
GTGATGTCAGGATCCTGAAT+TGG + chr8_3:53150844-53150863 Msa1295110:intron 45.0%
CTATTGCTAACTAGTGCCTC+TGG + chr8_3:53151019-53151038 Msa1295110:intron 45.0%
ATTGCTAACTAGTGCCTCTG+GGG + chr8_3:53151021-53151040 Msa1295110:intron 45.0%
TTTCTTAACTAGTGCCCCAG+AGG - chr8_3:53151038-53151057 None:intergenic 45.0%
GTTTCCTTAACTAATGCCCC+AGG + chr8_3:53151149-53151168 Msa1295110:intron 45.0%
TTCCTTAACTAATGCCCCAG+GGG + chr8_3:53151151-53151170 Msa1295110:intron 45.0%
GCATGGAAGAAGAAAGGTCA+TGG + chr8_3:53151223-53151242 Msa1295110:intron 45.0%
GGTAACTGAAGGGGATTTCT+TGG + chr8_3:53151258-53151277 Msa1295110:intron 45.0%
GATTTCTTGGGTGAAGTCAC+TGG + chr8_3:53151271-53151290 Msa1295110:CDS 45.0%
TGCCTTGTGTCATACTGTTC+AGG + chr8_3:53151711-53151730 Msa1295110:CDS 45.0%
CACCTGAACAGTATGACACA+AGG - chr8_3:53151716-53151735 None:intergenic 45.0%
TGTGTCATACTGTTCAGGTG+AGG + chr8_3:53151716-53151735 Msa1295110:intron 45.0%
!! CGATTTTTCCACAAGAGCAC+TGG + chr8_3:53152068-53152087 Msa1295110:CDS 45.0%
!!! TTTTTCCACAAGAGCACTGG+AGG + chr8_3:53152071-53152090 Msa1295110:CDS 45.0%
!! AGTGGTGTTACACTCTACCT+AGG - chr8_3:53152476-53152495 None:intergenic 45.0%
!! AATACAATATAAAATATATA+AGG - chr8_3:53150738-53150757 None:intergenic 5.0%
!!! AAAAAAAGAAAATTTTATAT+TGG + chr8_3:53151061-53151080 Msa1295110:intron 5.0%
!! AATACAATATAAAATATATA+AGG - chr8_3:53150738-53150757 None:intergenic 5.0%
!!! AAAAAAAGAAAATTTTATAT+TGG + chr8_3:53151061-53151080 Msa1295110:intron 5.0%
GTTCATCAGGCTTGATGCAG+AGG + chr8_3:53151505-53151524 Msa1295110:CDS 50.0%
!! CTTCATGGTAGTGGTTAGCC+TGG + chr8_3:53151908-53151927 Msa1295110:intron 50.0%
AGCAGCCGCTGAAGATCTAA+CGG - chr8_3:53152258-53152277 None:intergenic 50.0%
GTTCATCAGGCTTGATGCAG+AGG + chr8_3:53151505-53151524 Msa1295110:CDS 50.0%
!! CTTCATGGTAGTGGTTAGCC+TGG + chr8_3:53151908-53151927 Msa1295110:intron 50.0%
AGCAGCCGCTGAAGATCTAA+CGG - chr8_3:53152258-53152277 None:intergenic 50.0%
! TGCCCCTGGGGCATTAGTTA+AGG - chr8_3:53151156-53151175 None:intergenic 55.0%
GAGAGAAGCAGAGAAACGGG+AGG + chr8_3:53151201-53151220 Msa1295110:intron 55.0%
AAGCAGAGAAACGGGAGGCA+TGG + chr8_3:53151206-53151225 Msa1295110:intron 55.0%
! CGGGAGGCATGGAAGAAGAA+AGG + chr8_3:53151217-53151236 Msa1295110:intron 55.0%
CAGAACCTCCAGTGCTCTTG+TGG - chr8_3:53152079-53152098 None:intergenic 55.0%
! TGCCCCTGGGGCATTAGTTA+AGG - chr8_3:53151156-53151175 None:intergenic 55.0%
GAGAGAAGCAGAGAAACGGG+AGG + chr8_3:53151201-53151220 Msa1295110:intron 55.0%
AAGCAGAGAAACGGGAGGCA+TGG + chr8_3:53151206-53151225 Msa1295110:intron 55.0%
! CGGGAGGCATGGAAGAAGAA+AGG + chr8_3:53151217-53151236 Msa1295110:intron 55.0%
CAGAACCTCCAGTGCTCTTG+TGG - chr8_3:53152079-53152098 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 53150649 53152556 53150649 ID=Msa1295110;Name=Msa1295110
chr8_3 mRNA 53150649 53152556 53150649 ID=Msa1295110-mRNA-1;Parent=Msa1295110;Name=Msa1295110-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.66|0.57|0.85|0.83|0.71|7|255|162
chr8_3 exon 53150649 53150657 53150649 ID=Msa1295110-mRNA-1:exon:15186;Parent=Msa1295110-mRNA-1
chr8_3 exon 53150854 53150901 53150854 ID=Msa1295110-mRNA-1:exon:15187;Parent=Msa1295110-mRNA-1
chr8_3 exon 53151259 53151344 53151259 ID=Msa1295110-mRNA-1:exon:15188;Parent=Msa1295110-mRNA-1
chr8_3 exon 53151454 53151526 53151454 ID=Msa1295110-mRNA-1:exon:15189;Parent=Msa1295110-mRNA-1
chr8_3 exon 53151671 53151732 53151671 ID=Msa1295110-mRNA-1:exon:15190;Parent=Msa1295110-mRNA-1
chr8_3 exon 53152014 53152111 53152014 ID=Msa1295110-mRNA-1:exon:15191;Parent=Msa1295110-mRNA-1
chr8_3 exon 53152189 53152556 53152189 ID=Msa1295110-mRNA-1:exon:15192;Parent=Msa1295110-mRNA-1
chr8_3 CDS 53150649 53150657 53150649 ID=Msa1295110-mRNA-1:cds;Parent=Msa1295110-mRNA-1
chr8_3 CDS 53150854 53150901 53150854 ID=Msa1295110-mRNA-1:cds;Parent=Msa1295110-mRNA-1
chr8_3 CDS 53151259 53151344 53151259 ID=Msa1295110-mRNA-1:cds;Parent=Msa1295110-mRNA-1
chr8_3 CDS 53151454 53151526 53151454 ID=Msa1295110-mRNA-1:cds;Parent=Msa1295110-mRNA-1
chr8_3 CDS 53151671 53151732 53151671 ID=Msa1295110-mRNA-1:cds;Parent=Msa1295110-mRNA-1
chr8_3 CDS 53152014 53152111 53152014 ID=Msa1295110-mRNA-1:cds;Parent=Msa1295110-mRNA-1
chr8_3 CDS 53152189 53152301 53152189 ID=Msa1295110-mRNA-1:cds;Parent=Msa1295110-mRNA-1
chr8_3 three_prime_UTR 53152302 53152556 53152302 ID=Msa1295110-mRNA-1:three_prime_utr;Parent=Msa1295110-mRNA-1
Gene Sequence

>Msa1295110

ATGGAAAAGGATCCTGAATTGGAAAAATTGCATGCAGACAGGATTGCAGCTTTTAAGGTAACTGAAGGGGATTTCTTGGGTGAAGTCACTGGAAGTGAAAAAGTGATTTGTCATTTCTATCATAAGGAGTTCTACCGATGCAAGATAATGGATAAACACTTAAAGTCCCTTTCAACAAAGCATATTGATACAAAGTTCATCAGGCTTGATGCAGAGAATGCACCGTTCTTCGTTGCAAAATTGGCAATCAAGACTTTGCCTTGTGTCATACTGTTCAGACAAGGAGTTGCAGTAGATAGATTGGTAGGGTTTCAAGATCTTGGAGCGAAAGACGATTTTTCCACAAGAGCACTGGAGGTTCTGCTGATAAAGAAAGGTATTATTGCCGAGAAAAAAGATGTGGATGAAGAAGATCAAGAATACGATGAAAGTAAACGTAGATCCGTTAGATCTTCAGCGGCTGCTGATTCTGATTCTGATTCTGATTAA

Protein sequence

>Msa1295110

MEKDPELEKLHADRIAAFKVTEGDFLGEVTGSEKVICHFYHKEFYRCKIMDKHLKSLSTKHIDTKFIRLDAENAPFFVAKLAIKTLPCVILFRQGVAVDRLVGFQDLGAKDDFSTRALEVLLIKKGIIAEKKDVDEEDQEYDESKRRSVRSSAAADSDSDSD*