AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1202580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202580 MtrunA17_Chr8g0372661 95.238 231 0 1 67 286 1 231 1.05e-158 441
Msa1202580 MtrunA17_Chr1g0207631 38.743 191 103 4 108 286 25 213 1.56e-35 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202580 AT5G66410.1 73.478 230 49 2 67 284 1 230 1.22e-113 327
Msa1202580 AT3G50960.2 73.043 230 50 2 67 284 1 230 8.12e-112 322
Msa1202580 AT3G50960.1 73.043 230 50 2 67 284 1 230 8.12e-112 322
Msa1202580 AT2G18990.1 36.765 204 115 4 93 284 10 211 1.53e-36 130
Msa1202580 AT3G25580.1 37.255 204 113 5 93 284 10 210 1.71e-36 129
Msa1202580 AT3G25580.2 37.255 204 113 5 93 284 5 205 2.01e-36 129

Find 64 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTTGCTTATAACTTATA+AGG 0.159288 8_1:-56179426 Msa1202580:three_prime_UTR
AACATTTGACAACCTTAAAA+AGG 0.224036 8_1:+56179321 None:intergenic
ACCGTTCTTTGTTGCAAAAT+TGG 0.230492 8_1:-56180151 Msa1202580:CDS
AATATATGCTTTCAGGATAA+TGG 0.300467 8_1:-56180388 Msa1202580:intron
TGCCTTGTGTCATACTGTTC+AGG 0.310619 8_1:-56180116 Msa1202580:intron
TTGGTAGGGTTTCAAGATCT+TGG 0.323322 8_1:-56179791 Msa1202580:CDS
CCAGAAATCCAAAAGGATAT+TGG 0.334196 8_1:+56179474 None:intergenic
ATCAATATGCTTTGTTGAAA+GGG 0.348912 8_1:+56180350 None:intergenic
GGTAACTGAAGGGGATTTCT+TGG 0.349950 8_1:-56180569 Msa1202580:CDS
GATTGAAGCTTTATTGTTGT+TGG 0.351097 8_1:+56184366 None:intergenic
TGTTTGCTTATAACTTATAA+GGG 0.364510 8_1:-56179425 Msa1202580:three_prime_UTR
ACTCTCACCAATCTCGCATT+TGG 0.367540 8_1:-56184150 Msa1202580:CDS
TACGTTTCCAAATGCGAGAT+TGG 0.375187 8_1:+56184143 None:intergenic
ATTGAAGCTTTATTGTTGTT+GGG 0.391409 8_1:+56184367 None:intergenic
GTTGCAGTAGATAGATTGGT+AGG 0.401977 8_1:-56179806 Msa1202580:CDS
GATTTCTTGGGTGAAGTCAC+TGG 0.418247 8_1:-56180556 Msa1202580:CDS
TTTATTGTTGTTGGGAATGA+TGG 0.423850 8_1:+56184375 None:intergenic
GATTTGTCATTTCTATCATA+AGG 0.426365 8_1:-56180521 Msa1202580:CDS
GGTTGACCTTGATGATTTGA+TGG 0.431419 8_1:-56183701 Msa1202580:CDS
AGAGTCGACTTTACAGCGTC+TGG 0.432210 8_1:+56184168 None:intergenic
AGGGAGGAACAGAATGGAAA+TGG 0.433654 8_1:+56184426 None:intergenic
TTGCAGAGATTTGTGAAGGA+GGG 0.444530 8_1:+56184407 None:intergenic
TATCAATATGCTTTGTTGAA+AGG 0.446459 8_1:+56180349 None:intergenic
AGGAGTTGCAGTAGATAGAT+TGG 0.446681 8_1:-56179810 Msa1202580:CDS
CAGAACCTCCAGTGCTCTTG+TGG 0.459386 8_1:+56179751 None:intergenic
GTAACTGAAGGGGATTTCTT+GGG 0.475841 8_1:-56180568 Msa1202580:CDS
GGAACAGAATGGAAATGGGC+TGG 0.477358 8_1:+56184431 None:intergenic
TCTGATTAAAATGAATCATC+CGG 0.477901 8_1:-56179534 Msa1202580:exon
GTGATGTCAGGATCCTGAAT+TGG 0.484812 8_1:-56180983 Msa1202580:intron
ATATTGATACAAAGTTCATC+AGG 0.487438 8_1:-56180335 Msa1202580:CDS
AGCTGCTCGTAATTATCAAA+AGG 0.494712 8_1:-56184112 Msa1202580:intron
GTTGCAGAGATTTGTGAAGG+AGG 0.508474 8_1:+56184406 None:intergenic
TTGCAGTAGATAGATTGGTA+GGG 0.514893 8_1:-56179805 Msa1202580:CDS
GGGAGGAACAGAATGGAAAT+GGG 0.515057 8_1:+56184427 None:intergenic
TTCATCCAGATCTCATAAAA+CGG 0.525171 8_1:-56184283 Msa1202580:intron
TTATGAGATCTGGATGAAGA+AGG 0.530936 8_1:+56184288 None:intergenic
GAAGTTGCAGAGATTTGTGA+AGG 0.531857 8_1:+56184403 None:intergenic
GGAATTGCTTAGTGAAGAGA+AGG 0.536456 8_1:-56183752 Msa1202580:CDS
TGAAGGAGGGAGGAACAGAA+TGG 0.541713 8_1:+56184420 None:intergenic
TATTTCTTTCATGATGCCGC+CGG 0.544507 8_1:+56179515 None:intergenic
GAACAGAATGGAAATGGGCT+GGG 0.545582 8_1:+56184432 None:intergenic
GAGGTTCTGCTGATAAAGAA+AGG 0.554204 8_1:-56179737 Msa1202580:intron
GTTCATCAGGCTTGATGCAG+AGG 0.554580 8_1:-56180322 Msa1202580:intron
CAGAGATTTGTGAAGGAGGG+AGG 0.569976 8_1:+56184410 None:intergenic
TGAATGCGAGTGCTAAGCTC+AGG 0.570028 8_1:+56184324 None:intergenic
ATACAAGCCAGAAATCCAAA+AGG 0.576612 8_1:+56179467 None:intergenic
AGCTTCATTTGTAACGAAGG+AGG 0.585402 8_1:-56179294 Msa1202580:three_prime_UTR
AGCAGCCGCTGAAGATCTAA+CGG 0.588057 8_1:+56179572 None:intergenic
AATTTAGAGAGGTAACTGAA+GGG 0.589625 8_1:-56180579 Msa1202580:CDS
GAATTTAGAGAGGTAACTGA+AGG 0.591103 8_1:-56180580 Msa1202580:CDS
AGGTCATGGTGAATTTAGAG+AGG 0.594615 8_1:-56180590 Msa1202580:CDS
ATACATCCATCAAATCATCA+AGG 0.601675 8_1:+56183695 None:intergenic
ATTTAGAGAGGTAACTGAAG+GGG 0.604140 8_1:-56180578 Msa1202580:CDS
GCATGGAAGAAGAAAGGTCA+TGG 0.607111 8_1:-56180604 Msa1202580:intron
GTAAAAGGGCATACTTGCAT+CGG 0.607611 8_1:+56180491 None:intergenic
GAGAGCTTCATTTGTAACGA+AGG 0.615294 8_1:-56179297 Msa1202580:three_prime_UTR
AGTGGTGTTACACTCTACCT+AGG 0.616902 8_1:+56179354 None:intergenic
GCATCATGAAAGAAATAGAG+TGG 0.625135 8_1:-56179509 Msa1202580:three_prime_UTR
ATGCGAGTGCTAAGCTCAGG+AGG 0.637699 8_1:+56184327 None:intergenic
CACCTGAACAGTATGACACA+AGG 0.641883 8_1:+56180114 None:intergenic
TAGATCCGTTAGATCTTCAG+CGG 0.680937 8_1:-56179577 Msa1202580:CDS
ATCGAGTTCTATAAACGAGG+AGG 0.682972 8_1:-56183722 Msa1202580:CDS
GATTAAAATGAATCATCCGG+CGG 0.703315 8_1:-56179531 Msa1202580:exon
ACAATCGAGTTCTATAAACG+AGG 0.744786 8_1:-56183725 Msa1202580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATTGAATTCTAATT+AGG - chr8_1:56180417-56180436 Msa1202580:intron 10.0%
!!! TTTTCTTCTATTTAATTTTT+TGG - chr8_1:56180780-56180799 Msa1202580:intron 10.0%
!! TTATATCAATTTAATTAACT+AGG - chr8_1:56183841-56183860 Msa1202580:intron 10.0%
!! TATATCAATTTAATTAACTA+GGG - chr8_1:56183842-56183861 Msa1202580:intron 10.0%
!! ACTACATAAAATAATAAACA+TGG + chr8_1:56179674-56179693 None:intergenic 15.0%
!! TTTAAATTCAGAAGTTAAAT+AGG + chr8_1:56180403-56180422 None:intergenic 15.0%
!! AATAGAAACAAATATTAGAT+GGG - chr8_1:56180988-56181007 Msa1202580:intron 15.0%
!!! TTCTTTTGATAAATTTTCTA+CGG - chr8_1:56182108-56182127 Msa1202580:intron 15.0%
!! ATATTTGCATTAAAATCATA+TGG + chr8_1:56183467-56183486 None:intergenic 15.0%
!! AAAGATTAAATATTCTCTTT+AGG + chr8_1:56183694-56183713 None:intergenic 15.0%
!!! ATATCATTTTTATTTAGAAG+GGG + chr8_1:56183725-56183744 None:intergenic 15.0%
!!! GATATCATTTTTATTTAGAA+GGG + chr8_1:56183726-56183745 None:intergenic 15.0%
!!! AGATATCATTTTTATTTAGA+AGG + chr8_1:56183727-56183746 None:intergenic 15.0%
!! ATCAGAATCAAAATCAAAAT+CGG + chr8_1:56179480-56179499 None:intergenic 20.0%
!! AATTATGAGTGATTATGAAA+AGG + chr8_1:56179640-56179659 None:intergenic 20.0%
!! TTTCATAATCACTCATAATT+AGG - chr8_1:56179640-56179659 Msa1202580:CDS 20.0%
!! ACATATGATTGTTAACAAAA+AGG - chr8_1:56180096-56180115 Msa1202580:intron 20.0%
!! GAATAGAAACAAATATTAGA+TGG - chr8_1:56180987-56181006 Msa1202580:intron 20.0%
!!! TTGCTTCATTTTTTTTCATA+AGG - chr8_1:56181053-56181072 Msa1202580:intron 20.0%
!!! TCAGATTTAACATTTTTTCT+AGG + chr8_1:56181100-56181119 None:intergenic 20.0%
!! CAAAAATAAATGTGAAAGAT+TGG - chr8_1:56181559-56181578 Msa1202580:intron 20.0%
!!! TATTTTGTTGTATTTTCAAC+TGG - chr8_1:56182082-56182101 Msa1202580:intron 20.0%
!!! ATTTTGTTGTATTTTCAACT+GGG - chr8_1:56182083-56182102 Msa1202580:intron 20.0%
!! GTAGAAAATTTATCAAAAGA+AGG + chr8_1:56182109-56182128 None:intergenic 20.0%
!!! TCTTTTGATAAATTTTCTAC+GGG - chr8_1:56182109-56182128 Msa1202580:intron 20.0%
!!! TTTGTATGAGTGTTATTTTA+TGG - chr8_1:56182496-56182515 Msa1202580:intron 20.0%
!!! AAAATATATAAGGCATTCTT+GGG + chr8_1:56182594-56182613 None:intergenic 20.0%
!!! TAAAATATATAAGGCATTCT+TGG + chr8_1:56182595-56182614 None:intergenic 20.0%
!! AAACCTTAAATCAGAATAAT+GGG + chr8_1:56182680-56182699 None:intergenic 20.0%
!! TAAACCTTAAATCAGAATAA+TGG + chr8_1:56182681-56182700 None:intergenic 20.0%
!! AGGTATTCTATATATAAAAG+GGG + chr8_1:56182831-56182850 None:intergenic 20.0%
!!! GAGGTATTCTATATATAAAA+GGG + chr8_1:56182832-56182851 None:intergenic 20.0%
!! AAATATAATCATGAATAACG+AGG + chr8_1:56182851-56182870 None:intergenic 20.0%
!! TTCAATGAACAATAGTAAAA+GGG + chr8_1:56183219-56183238 None:intergenic 20.0%
!! ATTCAATGAACAATAGTAAA+AGG + chr8_1:56183220-56183239 None:intergenic 20.0%
!!! CTTTTACTTCTTGAATTTTT+CGG - chr8_1:56183613-56183632 Msa1202580:intron 20.0%
!! TTGTTTGCTTATAACTTATA+AGG - chr8_1:56184267-56184286 Msa1202580:intron 20.0%
!! TGTTTGCTTATAACTTATAA+GGG - chr8_1:56184268-56184287 Msa1202580:intron 20.0%
!!! TTTTAATGTATTACATTCCT+AGG - chr8_1:56184293-56184312 Msa1202580:CDS 20.0%
!! AAAAAATGTATTACATTCCT+AGG - chr8_1:56184322-56184341 Msa1202580:CDS 20.0%
!!! TGAATAGATCAATTTTTGAA+AGG + chr8_1:56184438-56184457 None:intergenic 20.0%
!!! ATTGAAGCTTTATTGTTGTT+GGG + chr8_1:56179329-56179348 None:intergenic 25.0%
! TCAGAATCAAAATCAAAATC+GGG + chr8_1:56179479-56179498 None:intergenic 25.0%
!! ATGTATGTTTGCTAGTATTT+AGG - chr8_1:56180050-56180069 Msa1202580:intron 25.0%
!! CAAACAAATTCTAAGAAACA+TGG + chr8_1:56180373-56180392 None:intergenic 25.0%
! AAATTCAGAAGTTAAATAGG+TGG + chr8_1:56180400-56180419 None:intergenic 25.0%
! CAAAACAAAGTAAAGCAAAT+GGG + chr8_1:56180553-56180572 None:intergenic 25.0%
! GCATAATCTATGATATTAGT+TGG - chr8_1:56180687-56180706 Msa1202580:intron 25.0%
! TTCTATTTAGCTATGCATTT+AGG - chr8_1:56180872-56180891 Msa1202580:intron 25.0%
! AAACTTTCAGTTTGCAATTA+AGG + chr8_1:56181295-56181314 None:intergenic 25.0%
!!! GAAAGTTTAACTTGTAAATG+TGG - chr8_1:56181307-56181326 Msa1202580:intron 25.0%
!!! TTTTTGTTTATTCTCACATG+AGG + chr8_1:56181545-56181564 None:intergenic 25.0%
!!! AAAATGTTATTTCATCGATC+TGG - chr8_1:56181871-56181890 Msa1202580:intron 25.0%
!!! TTTGTGTGAGTGTTATTTTA+TGG - chr8_1:56182163-56182182 Msa1202580:intron 25.0%
!!! TGAGTGTTATTTTATGGAAA+AGG - chr8_1:56182169-56182188 Msa1202580:intron 25.0%
! AAATAACACTCATACAAAAC+AGG + chr8_1:56182494-56182513 None:intergenic 25.0%
!!! TGAGTGTTATTTTATGGAAA+AGG - chr8_1:56182169-56182188 Msa1202580:intron 25.0%
! ATACCCATTATTCTGATTTA+AGG - chr8_1:56182674-56182693 Msa1202580:intron 25.0%
!! CGAGGTATTCTATATATAAA+AGG + chr8_1:56182833-56182852 None:intergenic 25.0%
!! GATTTGTCATTTCTATCATA+AGG - chr8_1:56183172-56183191 Msa1202580:intron 25.0%
! CATATATTGATACAACACAA+AGG + chr8_1:56183293-56183312 None:intergenic 25.0%
! TTGTATCAATATATGCTTTC+AGG - chr8_1:56183298-56183317 Msa1202580:intron 25.0%
! AATATATGCTTTCAGGATAA+TGG - chr8_1:56183305-56183324 Msa1202580:intron 25.0%
!! ATCAATATGCTTTGTTGAAA+GGG + chr8_1:56183346-56183365 None:intergenic 25.0%
!! TATCAATATGCTTTGTTGAA+AGG + chr8_1:56183347-56183366 None:intergenic 25.0%
! ATATTGATACAAAGTTCATC+AGG - chr8_1:56183358-56183377 Msa1202580:intron 25.0%
!!! TTTTTTAACTGTCATTTGAC+AGG - chr8_1:56184033-56184052 Msa1202580:intron 25.0%
! TCTGATTAAAATGAATCATC+CGG - chr8_1:56184159-56184178 Msa1202580:CDS 25.0%
!!! ATACATTTTTTAGCAAACCT+AGG + chr8_1:56184313-56184332 None:intergenic 25.0%
! AACATTTGACAACCTTAAAA+AGG + chr8_1:56184375-56184394 None:intergenic 25.0%
!!! TTTTTAAGGTTGTCAAATGT+TGG - chr8_1:56184374-56184393 Msa1202580:CDS 25.0%
! TTTATTGTTGTTGGGAATGA+TGG + chr8_1:56179321-56179340 None:intergenic 30.0%
!! GATTGAAGCTTTATTGTTGT+TGG + chr8_1:56179330-56179349 None:intergenic 30.0%
TTCATCCAGATCTCATAAAA+CGG - chr8_1:56179410-56179429 Msa1202580:three_prime_UTR 30.0%
CAGAATCAAAATCAAAATCG+GGG + chr8_1:56179478-56179497 None:intergenic 30.0%
ATATGAATCATGATCTCTGT+AGG - chr8_1:56179920-56179939 Msa1202580:intron 30.0%
ATACATCCATCAAATCATCA+AGG + chr8_1:56180001-56180020 None:intergenic 30.0%
! TTTGATACGTTTTCTTTGCA+AGG - chr8_1:56180303-56180322 Msa1202580:intron 30.0%
! CAAGGAAATTCAAATGCTTT+TGG - chr8_1:56180321-56180340 Msa1202580:intron 30.0%
CTTCCACCTATAACTTATAT+AGG - chr8_1:56180453-56180472 Msa1202580:intron 30.0%
ATGCCTATATAAGTTATAGG+TGG + chr8_1:56180459-56180478 None:intergenic 30.0%
ACCTATAACTTATATAGGCA+TGG - chr8_1:56180458-56180477 Msa1202580:intron 30.0%
ACCATGCCTATATAAGTTAT+AGG + chr8_1:56180462-56180481 None:intergenic 30.0%
GCAAAACAAAGTAAAGCAAA+TGG + chr8_1:56180554-56180573 None:intergenic 30.0%
CAGTAATCACAAATTGGAAA+AGG + chr8_1:56180744-56180763 None:intergenic 30.0%
ATGATAGTCTATTCATCCTT+CGG - chr8_1:56180818-56180837 Msa1202580:intron 30.0%
CTATGCATTTAGGAATGATA+TGG - chr8_1:56180882-56180901 Msa1202580:intron 30.0%
GAAACAAATATTAGATGGGT+CGG - chr8_1:56180992-56181011 Msa1202580:intron 30.0%
AGGATTAATCAACTAGACAT+GGG + chr8_1:56181080-56181099 None:intergenic 30.0%
TAGGATTAATCAACTAGACA+TGG + chr8_1:56181081-56181100 None:intergenic 30.0%
TACGAAGATTTGTGATGAAA+TGG - chr8_1:56181132-56181151 Msa1202580:intron 30.0%
ACGAAGATTTGTGATGAAAT+GGG - chr8_1:56181133-56181152 Msa1202580:intron 30.0%
TGCAATTAAGGTGATTTCAA+TGG + chr8_1:56181283-56181302 None:intergenic 30.0%
!! AGTTTAACTTGTAAATGTGG+CGG - chr8_1:56181310-56181329 Msa1202580:intron 30.0%
GTGAATGAATGTCTTTCTTA+TGG - chr8_1:56181418-56181437 Msa1202580:intron 30.0%
GAACAGAAACATCACAAAAA+AGG - chr8_1:56181496-56181515 Msa1202580:intron 30.0%
! GTGTATTTCTACATAGATGT+AGG - chr8_1:56181734-56181753 Msa1202580:intron 30.0%
!!! AGGTTTTGAATTCACCATTA+CGG - chr8_1:56181754-56181773 Msa1202580:intron 30.0%
GAATTATTATGCATTGTGTG+TGG - chr8_1:56181843-56181862 Msa1202580:intron 30.0%
AAATAACACTCACACAAAAC+AGG + chr8_1:56182161-56182180 None:intergenic 30.0%
!!! ATGCACCTTTTAGTTTGTTT+CGG - chr8_1:56182371-56182390 Msa1202580:intron 30.0%
TTATGTACAATTGTGATGTC+AGG - chr8_1:56182698-56182717 Msa1202580:intron 30.0%
AATTTAGAGAGGTAACTGAA+GGG - chr8_1:56183114-56183133 Msa1202580:intron 30.0%
! ATTGTTACTTCACATGTCAA+GGG + chr8_1:56183260-56183279 None:intergenic 30.0%
! AATTGTTACTTCACATGTCA+AGG + chr8_1:56183261-56183280 None:intergenic 30.0%
AAGTCTAAAAAACAGATGAG+TGG - chr8_1:56183658-56183677 Msa1202580:intron 30.0%
! AAAACGCTGCTTGTTAAATA+AGG - chr8_1:56183804-56183823 Msa1202580:intron 30.0%
TAACAAATGAAAAGGAATGG+AGG + chr8_1:56183998-56184017 None:intergenic 30.0%
CACTAACAAATGAAAAGGAA+TGG + chr8_1:56184001-56184020 None:intergenic 30.0%
AGACACACTAACAAATGAAA+AGG + chr8_1:56184006-56184025 None:intergenic 30.0%
!! TTTTCATTTGTTAGTGTGTC+TGG - chr8_1:56184005-56184024 Msa1202580:intron 30.0%
!!! TTCATCCACATCTTTTTTCT+CGG + chr8_1:56184067-56184086 None:intergenic 30.0%
! TGTTTTGTCCAATATCCTTT+TGG - chr8_1:56184211-56184230 Msa1202580:intron 30.0%
TAAAAAGGTTCATACAGAAG+TGG + chr8_1:56184360-56184379 None:intergenic 30.0%
! CTTCTGTATGAACCTTTTTA+AGG - chr8_1:56184360-56184379 Msa1202580:CDS 30.0%
TTATGAGATCTGGATGAAGA+AGG + chr8_1:56179408-56179427 None:intergenic 35.0%
AGCTGCTCGTAATTATCAAA+AGG - chr8_1:56179581-56179600 Msa1202580:CDS 35.0%
TCACAGATTGCAGAAAATAG+TGG + chr8_1:56179818-56179837 None:intergenic 35.0%
CTGTGATTGACAACATTGAT+TGG - chr8_1:56179832-56179851 Msa1202580:intron 35.0%
ACAATCGAGTTCTATAAACG+AGG - chr8_1:56179968-56179987 Msa1202580:intron 35.0%
!! AGACTATGATAGAAGTACTG+AGG - chr8_1:56180212-56180231 Msa1202580:intron 35.0%
ATCGACACTTGCATATACAA+AGG + chr8_1:56180239-56180258 None:intergenic 35.0%
!! TTGTATATGCAAGTGTCGAT+TGG - chr8_1:56180239-56180258 Msa1202580:intron 35.0%
GAAATACTAGAAGGTCTCAT+TGG - chr8_1:56180269-56180288 Msa1202580:intron 35.0%
ACAATTCCCTTTGTAGTCAA+CGG + chr8_1:56180512-56180531 None:intergenic 35.0%
!! AAGTAAAGCAAATGGGCTAT+CGG + chr8_1:56180546-56180565 None:intergenic 35.0%
AAAGTGATTCAAGACTTCCA+AGG + chr8_1:56180606-56180625 None:intergenic 35.0%
AAAGGTCAGATGTGTAAAAG+TGG + chr8_1:56180648-56180667 None:intergenic 35.0%
ATTAATTGCCTGCACACAAA+AGG + chr8_1:56180666-56180685 None:intergenic 35.0%
TGATAGTCTATTCATCCTTC+GGG - chr8_1:56180819-56180838 Msa1202580:intron 35.0%
AGAATTTCCCAACAAGACAA+AGG + chr8_1:56180936-56180955 None:intergenic 35.0%
!! TCAATGGATTATAGCTCTGT+GGG + chr8_1:56181267-56181286 None:intergenic 35.0%
!! TTCAATGGATTATAGCTCTG+TGG + chr8_1:56181268-56181287 None:intergenic 35.0%
!! GTTTAACTTGTAAATGTGGC+GGG - chr8_1:56181311-56181330 Msa1202580:intron 35.0%
!!! ATTTTGACTGTTTCTGCCAA+CGG + chr8_1:56181354-56181373 None:intergenic 35.0%
TTCAAACACATTAACGCGAA+GGG + chr8_1:56181394-56181413 None:intergenic 35.0%
ATGTCTTTCTTATGGAAGCA+TGG - chr8_1:56181426-56181445 Msa1202580:intron 35.0%
GCAACATGCTGAAAAATGAA+AGG - chr8_1:56181697-56181716 Msa1202580:intron 35.0%
TAGAAATACACGCTGACATA+TGG + chr8_1:56181725-56181744 None:intergenic 35.0%
TTCACCATTACGGAAAGATT+TGG - chr8_1:56181764-56181783 Msa1202580:intron 35.0%
TCACCATTACGGAAAGATTT+GGG - chr8_1:56181765-56181784 Msa1202580:intron 35.0%
! TTTGTGTAAAGAGGTGTATG+TGG - chr8_1:56181816-56181835 Msa1202580:intron 35.0%
TTTCATCGATCTGGTAATCA+TGG - chr8_1:56181880-56181899 Msa1202580:intron 35.0%
TTCATCGATCTGGTAATCAT+GGG - chr8_1:56181881-56181900 Msa1202580:intron 35.0%
GCTACAATGGCAATTACAAT+GGG + chr8_1:56182259-56182278 None:intergenic 35.0%
TGCTACAATGGCAATTACAA+TGG + chr8_1:56182260-56182279 None:intergenic 35.0%
! GCATGCAATTTTTCCAATTC+AGG + chr8_1:56182726-56182745 None:intergenic 35.0%
ATGATGCATCCTTGTATGTA+TGG + chr8_1:56182781-56182800 None:intergenic 35.0%
TATTGCTAACTAGTGCCTTT+GGG - chr8_1:56182886-56182905 Msa1202580:intron 35.0%
!!! TTTTTTAACTAGTGCCCCAA+AGG + chr8_1:56182904-56182923 None:intergenic 35.0%
AAAGAAAAATTAGTGCCCCT+GGG + chr8_1:56183035-56183054 None:intergenic 35.0%
TATAGAGAGAAGCAGAGAAA+CGG - chr8_1:56183063-56183082 Msa1202580:intron 35.0%
GAATTTAGAGAGGTAACTGA+AGG - chr8_1:56183113-56183132 Msa1202580:intron 35.0%
ATTTAGAGAGGTAACTGAAG+GGG - chr8_1:56183115-56183134 Msa1202580:intron 35.0%
ACCGTTCTTTGTTGCAAAAT+TGG - chr8_1:56183542-56183561 Msa1202580:intron 35.0%
! GCCAATTTTGCAACAAAGAA+CGG + chr8_1:56183546-56183565 None:intergenic 35.0%
! TGAAGCTAATTGTTGCTTCA+TGG - chr8_1:56183759-56183778 Msa1202580:intron 35.0%
! TAATTGTTGCTTCATGGTAG+TGG - chr8_1:56183765-56183784 Msa1202580:intron 35.0%
!!! GGTGTTTCTTTTTTCAGACA+AGG - chr8_1:56183863-56183882 Msa1202580:intron 35.0%
TTGCAGTAGATAGATTGGTA+GGG - chr8_1:56183888-56183907 Msa1202580:intron 35.0%
TATTGCCGAGAAAAAAGATG+TGG - chr8_1:56184059-56184078 Msa1202580:intron 35.0%
GATTAAAATGAATCATCCGG+CGG - chr8_1:56184162-56184181 Msa1202580:CDS 35.0%
GCATCATGAAAGAAATAGAG+TGG - chr8_1:56184184-56184203 Msa1202580:intron 35.0%
CCAGAAATCCAAAAGGATAT+TGG + chr8_1:56184222-56184241 None:intergenic 35.0%
! CCAATATCCTTTTGGATTTC+TGG - chr8_1:56184219-56184238 Msa1202580:intron 35.0%
ATACAAGCCAGAAATCCAAA+AGG + chr8_1:56184229-56184248 None:intergenic 35.0%
TTGCAGAGATTTGTGAAGGA+GGG + chr8_1:56179289-56179308 None:intergenic 40.0%
GAAGTTGCAGAGATTTGTGA+AGG + chr8_1:56179293-56179312 None:intergenic 40.0%
! TTGCACCGTTTTATGAGATC+TGG + chr8_1:56179418-56179437 None:intergenic 40.0%
TACGTTTCCAAATGCGAGAT+TGG + chr8_1:56179553-56179572 None:intergenic 40.0%
TTTCACTACACTACAACGCA+CGG + chr8_1:56179785-56179804 None:intergenic 40.0%
GGAATTGCTTAGTGAAGAGA+AGG - chr8_1:56179941-56179960 Msa1202580:intron 40.0%
ATCGAGTTCTATAAACGAGG+AGG - chr8_1:56179971-56179990 Msa1202580:intron 40.0%
! GGTTGACCTTGATGATTTGA+TGG - chr8_1:56179992-56180011 Msa1202580:intron 40.0%
GGTTGACTGGAAATACTAGA+AGG - chr8_1:56180260-56180279 Msa1202580:intron 40.0%
! GAAACATGGTCTTCTGAAGA+AGG + chr8_1:56180359-56180378 None:intergenic 40.0%
!! TAGGTGGAAGCATTAGTTTG+TGG + chr8_1:56180443-56180462 None:intergenic 40.0%
TACAGGCTGCAAACTACAAA+TGG + chr8_1:56180578-56180597 None:intergenic 40.0%
GTAAAAGTGGCTTATGATGC+AGG + chr8_1:56180635-56180654 None:intergenic 40.0%
GCACTGCAGTAATCACAAAT+TGG + chr8_1:56180750-56180769 None:intergenic 40.0%
GATAGTCTATTCATCCTTCG+GGG - chr8_1:56180820-56180839 Msa1202580:intron 40.0%
ATTTCCCAACAAGACAAAGG+AGG + chr8_1:56180933-56180952 None:intergenic 40.0%
!!! TTTTGACTGTTTCTGCCAAC+GGG + chr8_1:56181353-56181372 None:intergenic 40.0%
CTTCAAACACATTAACGCGA+AGG + chr8_1:56181395-56181414 None:intergenic 40.0%
! GAAGTGTTTGACAGGAAGAT+GGG + chr8_1:56181454-56181473 None:intergenic 40.0%
!! AGAAGTGTTTGACAGGAAGA+TGG + chr8_1:56181455-56181474 None:intergenic 40.0%
!! GAGATTGAGAAGTGTTTGAC+AGG + chr8_1:56181462-56181481 None:intergenic 40.0%
TACACAGTTCTCTTGCAGAA+AGG + chr8_1:56181637-56181656 None:intergenic 40.0%
TCTCCCAAATCTTTCCGTAA+TGG + chr8_1:56181771-56181790 None:intergenic 40.0%
TTACGGAAAGATTTGGGAGA+AGG - chr8_1:56181771-56181790 Msa1202580:intron 40.0%
TACGGAAAGATTTGGGAGAA+GGG - chr8_1:56181772-56181791 Msa1202580:intron 40.0%
AGCCATGTGTTTGTGTAAAG+AGG - chr8_1:56181807-56181826 Msa1202580:intron 40.0%
CACCTCTTTACACAAACACA+TGG + chr8_1:56181812-56181831 None:intergenic 40.0%
TCATCGATCTGGTAATCATG+GGG - chr8_1:56181882-56181901 Msa1202580:intron 40.0%
! TTTGGAGTGTGTTTCTCTCA+AGG - chr8_1:56181985-56182004 Msa1202580:intron 40.0%
ATACAAAACAGGCTTCGAGT+TGG + chr8_1:56182483-56182502 None:intergenic 40.0%
TGGAAAAATTGCATGCAGAC+AGG - chr8_1:56182730-56182749 Msa1202580:intron 40.0%
! AGACAGGATTGCAGCTTTTA+AGG - chr8_1:56182746-56182765 Msa1202580:intron 40.0%
TAGTGACCTCCATACATACA+AGG - chr8_1:56182769-56182788 Msa1202580:intron 40.0%
ATGCATCCTTGTATGTATGG+AGG + chr8_1:56182778-56182797 None:intergenic 40.0%
CTATTGCTAACTAGTGCCTT+TGG - chr8_1:56182885-56182904 Msa1202580:intron 40.0%
ATTGCTAACTAGTGCCTTTG+GGG - chr8_1:56182887-56182906 Msa1202580:intron 40.0%
TTTCCTTAACTAATGCCCCA+GGG - chr8_1:56183016-56183035 Msa1202580:intron 40.0%
AAGAAAAATTAGTGCCCCTG+GGG + chr8_1:56183034-56183053 None:intergenic 40.0%
CAAAGAAAAATTAGTGCCCC+TGG + chr8_1:56183036-56183055 None:intergenic 40.0%
ATAGAGAGAAGCAGAGAAAC+GGG - chr8_1:56183064-56183083 Msa1202580:intron 40.0%
AGGTCATGGTGAATTTAGAG+AGG - chr8_1:56183103-56183122 Msa1202580:intron 40.0%
GTAACTGAAGGGGATTTCTT+GGG - chr8_1:56183125-56183144 Msa1202580:intron 40.0%
! GTAAAAGGGCATACTTGCAT+CGG + chr8_1:56183205-56183224 None:intergenic 40.0%
TTACTTCACATGTCAAGGGA+TGG + chr8_1:56183256-56183275 None:intergenic 40.0%
!!! AGCAGCGTTTTATTTTAGCC+AGG + chr8_1:56183795-56183814 None:intergenic 40.0%
AGGAGTTGCAGTAGATAGAT+TGG - chr8_1:56183883-56183902 Msa1202580:intron 40.0%
GTTGCAGTAGATAGATTGGT+AGG - chr8_1:56183887-56183906 Msa1202580:intron 40.0%
TTGGTAGGGTTTCAAGATCT+TGG - chr8_1:56183902-56183921 Msa1202580:intron 40.0%
GAGGTTCTGCTGATAAAGAA+AGG - chr8_1:56183956-56183975 Msa1202580:intron 40.0%
TAGATCCGTTAGATCTTCAG+CGG - chr8_1:56184116-56184135 Msa1202580:CDS 40.0%
TATTTCTTTCATGATGCCGC+CGG + chr8_1:56184181-56184200 None:intergenic 40.0%
GAGAGCTTCATTTGTAACGA+AGG - chr8_1:56184396-56184415 Msa1202580:CDS 40.0%
AGCTTCATTTGTAACGAAGG+AGG - chr8_1:56184399-56184418 Msa1202580:CDS 40.0%
! GAACAGAATGGAAATGGGCT+GGG + chr8_1:56179264-56179283 None:intergenic 45.0%
GGGAGGAACAGAATGGAAAT+GGG + chr8_1:56179269-56179288 None:intergenic 45.0%
AGGGAGGAACAGAATGGAAA+TGG + chr8_1:56179270-56179289 None:intergenic 45.0%
GTTGCAGAGATTTGTGAAGG+AGG + chr8_1:56179290-56179309 None:intergenic 45.0%
ACTCTCACCAATCTCGCATT+TGG - chr8_1:56179543-56179562 Msa1202580:exon 45.0%
AGTCAACGGCACAAGTAATG+TGG + chr8_1:56180498-56180517 None:intergenic 45.0%
! ACTTGTGCCGTTGACTACAA+AGG - chr8_1:56180502-56180521 Msa1202580:intron 45.0%
! CTTGTGCCGTTGACTACAAA+GGG - chr8_1:56180503-56180522 Msa1202580:intron 45.0%
! AGACTTCCAAGGAAGTGTAC+AGG + chr8_1:56180595-56180614 None:intergenic 45.0%
! ACATCTGACCTTTTGTGTGC+AGG - chr8_1:56180655-56180674 Msa1202580:intron 45.0%
! CAGTCCTCCTTTGTCTTGTT+GGG - chr8_1:56180926-56180945 Msa1202580:intron 45.0%
ATTAGATGGGTCGGCATGTA+AGG - chr8_1:56181001-56181020 Msa1202580:intron 45.0%
TTAGATGGGTCGGCATGTAA+GGG - chr8_1:56181002-56181021 Msa1202580:intron 45.0%
AACCATTCATCAGCTGCTCT+AGG - chr8_1:56181194-56181213 Msa1202580:intron 45.0%
! ATAGCTCTGTGGGTCACAAA+AGG + chr8_1:56181257-56181276 None:intergenic 45.0%
!! TTTGACTGTTTCTGCCAACG+GGG + chr8_1:56181352-56181371 None:intergenic 45.0%
GTGAAACTTTCAGAGCAAGC+TGG - chr8_1:56181610-56181629 Msa1202580:intron 45.0%
TGCCTTTCTGTAGACAGAAC+AGG - chr8_1:56181660-56181679 Msa1202580:intron 45.0%
GCATGTTGCTGCATTTCTTC+AGG + chr8_1:56181686-56181705 None:intergenic 45.0%
TTTGGGAGAAGGGAATACTC+TGG - chr8_1:56181782-56181801 Msa1202580:intron 45.0%
CACTCACACAAAACAGGCTT+TGG + chr8_1:56182155-56182174 None:intergenic 45.0%
CAGTTCGGATTGTTCTCTCT+GGG + chr8_1:56182195-56182214 None:intergenic 45.0%
TCAGTTCGGATTGTTCTCTC+TGG + chr8_1:56182196-56182215 None:intergenic 45.0%
AGAGAGAACAATCCGAACTG+AGG - chr8_1:56182195-56182214 Msa1202580:intron 45.0%
GGCAATTACAATGGGAAGCA+AGG + chr8_1:56182251-56182270 None:intergenic 45.0%
TGATATACTGGAGGAAGGTG+GGG + chr8_1:56182327-56182346 None:intergenic 45.0%
GTGATATACTGGAGGAAGGT+GGG + chr8_1:56182328-56182347 None:intergenic 45.0%
AGTGATATACTGGAGGAAGG+TGG + chr8_1:56182329-56182348 None:intergenic 45.0%
ACCTTCCTCCAGTATATCAC+TGG - chr8_1:56182328-56182347 Msa1202580:intron 45.0%
CGGCTCCGAAACAAACTAAA+AGG + chr8_1:56182379-56182398 None:intergenic 45.0%
! TGTTTCGGAGCCGTTTGTTT+TGG - chr8_1:56182386-56182405 Msa1202580:intron 45.0%
GTGATGTCAGGATCCTGAAT+TGG - chr8_1:56182710-56182729 Msa1202580:intron 45.0%
GTTTCCTTAACTAATGCCCC+AGG - chr8_1:56183015-56183034 Msa1202580:intron 45.0%
TTCCTTAACTAATGCCCCAG+GGG - chr8_1:56183017-56183036 Msa1202580:intron 45.0%
GCATGGAAGAAGAAAGGTCA+TGG - chr8_1:56183089-56183108 Msa1202580:intron 45.0%
GGTAACTGAAGGGGATTTCT+TGG - chr8_1:56183124-56183143 Msa1202580:intron 45.0%
GATTTCTTGGGTGAAGTCAC+TGG - chr8_1:56183137-56183156 Msa1202580:intron 45.0%
TGCCTTGTGTCATACTGTTC+AGG - chr8_1:56183577-56183596 Msa1202580:intron 45.0%
CACCTGAACAGTATGACACA+AGG + chr8_1:56183582-56183601 None:intergenic 45.0%
TGTGTCATACTGTTCAGGTG+AGG - chr8_1:56183582-56183601 Msa1202580:intron 45.0%
!! CGATTTTTCCACAAGAGCAC+TGG - chr8_1:56183934-56183953 Msa1202580:intron 45.0%
!!! TTTTTCCACAAGAGCACTGG+AGG - chr8_1:56183937-56183956 Msa1202580:intron 45.0%
!! AGTGGTGTTACACTCTACCT+AGG + chr8_1:56184342-56184361 None:intergenic 45.0%
!! AATACAATATAAAATATATA+AGG + chr8_1:56182604-56182623 None:intergenic 5.0%
!!! AAAAAAAGAAAATTTTATAT+TGG - chr8_1:56182927-56182946 Msa1202580:intron 5.0%
GGAACAGAATGGAAATGGGC+TGG + chr8_1:56179265-56179284 None:intergenic 50.0%
TGAAGGAGGGAGGAACAGAA+TGG + chr8_1:56179276-56179295 None:intergenic 50.0%
CAGAGATTTGTGAAGGAGGG+AGG + chr8_1:56179286-56179305 None:intergenic 50.0%
TGAATGCGAGTGCTAAGCTC+AGG + chr8_1:56179372-56179391 None:intergenic 50.0%
! AGAGTCGACTTTACAGCGTC+TGG + chr8_1:56179528-56179547 None:intergenic 50.0%
!! GCAAGTGTCGATTGGTTGAC+TGG - chr8_1:56180247-56180266 Msa1202580:intron 50.0%
TTGCAGCCTGTACACTTCCT+TGG - chr8_1:56180586-56180605 Msa1202580:CDS 50.0%
TTCATCCTTCGGGGAGTAGT+AGG - chr8_1:56180829-56180848 Msa1202580:intron 50.0%
CCAACAAGACAAAGGAGGAC+TGG + chr8_1:56180928-56180947 None:intergenic 50.0%
CCAGTCCTCCTTTGTCTTGT+TGG - chr8_1:56180925-56180944 Msa1202580:intron 50.0%
GTCGGCATGTAAGGGTAGAT+AGG - chr8_1:56181010-56181029 Msa1202580:intron 50.0%
CACCTAGAGCAGCTGATGAA+TGG + chr8_1:56181199-56181218 None:intergenic 50.0%
AACCCTGTAACAATCCCCGT+TGG - chr8_1:56181335-56181354 Msa1202580:intron 50.0%
TGCCAACGGGGATTGTTACA+GGG + chr8_1:56181340-56181359 None:intergenic 50.0%
! CATTAACGCGAAGGGTGTGT+TGG + chr8_1:56181386-56181405 None:intergenic 50.0%
GGCCTGTTCTGTCTACAGAA+AGG + chr8_1:56181665-56181684 None:intergenic 50.0%
TGAACTCACTTGAGCTAGCC+TGG - chr8_1:56181945-56181964 Msa1202580:intron 50.0%
!! GTGGTGTTGGCTTAGGACTT+TGG - chr8_1:56181967-56181986 Msa1202580:intron 50.0%
GACTCTCCCAGTGCCAATTT+CGG - chr8_1:56182018-56182037 Msa1202580:intron 50.0%
! AAACAGGCTTTGGCGCTATC+TGG + chr8_1:56182145-56182164 None:intergenic 50.0%
CCGGAAAGATTGCCTCAGTT+CGG + chr8_1:56182210-56182229 None:intergenic 50.0%
CCGAACTGAGGCAATCTTTC+CGG - chr8_1:56182207-56182226 Msa1202580:intron 50.0%
CAATGGGAAGCAAGGCTGTA+AGG + chr8_1:56182243-56182262 None:intergenic 50.0%
TTGCCATTGTAGCACGTGTG+TGG - chr8_1:56182266-56182285 Msa1202580:intron 50.0%
CAAGTCCGCATGGCCTTTAT+GGG + chr8_1:56182297-56182316 None:intergenic 50.0%
TCAAGTCCGCATGGCCTTTA+TGG + chr8_1:56182298-56182317 None:intergenic 50.0%
GCCAGTGATATACTGGAGGA+AGG + chr8_1:56182332-56182351 None:intergenic 50.0%
GTCTGCCAGTGATATACTGG+AGG + chr8_1:56182336-56182355 None:intergenic 50.0%
AGGGTCTGCCAGTGATATAC+TGG + chr8_1:56182339-56182358 None:intergenic 50.0%
!!! TTCGGAGCCGTTTGTTTTGG+CGG - chr8_1:56182389-56182408 Msa1202580:intron 50.0%
!! CAAAACAGGCTTCGAGTTGG+CGG + chr8_1:56182480-56182499 None:intergenic 50.0%
GTTCATCAGGCTTGATGCAG+AGG - chr8_1:56183371-56183390 Msa1202580:intron 50.0%
!! CTTCATGGTAGTGGTTAGCC+TGG - chr8_1:56183774-56183793 Msa1202580:intron 50.0%
AGCAGCCGCTGAAGATCTAA+CGG + chr8_1:56184124-56184143 None:intergenic 50.0%
ATGCGAGTGCTAAGCTCAGG+AGG + chr8_1:56179369-56179388 None:intergenic 55.0%
! ACTAGCCTACTACTCCCCGA+AGG + chr8_1:56180837-56180856 None:intergenic 55.0%
CTGCCAACGGGGATTGTTAC+AGG + chr8_1:56181341-56181360 None:intergenic 55.0%
! ACTCACTTGAGCTAGCCTGG+TGG - chr8_1:56181948-56181967 Msa1202580:intron 55.0%
! TTGAGCTAGCCTGGTGGTGT+TGG - chr8_1:56181954-56181973 Msa1202580:intron 55.0%
!! TAGCCTGGTGGTGTTGGCTT+AGG - chr8_1:56181960-56181979 Msa1202580:intron 55.0%
AGTCCTAAGCCAACACCACC+AGG + chr8_1:56181966-56181985 None:intergenic 55.0%
AGCGCACCGAAATTGGCACT+GGG + chr8_1:56182027-56182046 None:intergenic 55.0%
CCAAACCAGCGCACCGAAAT+TGG + chr8_1:56182034-56182053 None:intergenic 55.0%
!! CCAATTTCGGTGCGCTGGTT+TGG - chr8_1:56182031-56182050 Msa1202580:intron 55.0%
TGGGAAGCAAGGCTGTAAGG+CGG + chr8_1:56182240-56182259 None:intergenic 55.0%
GGGATGACTTCAAGTCCGCA+TGG + chr8_1:56182307-56182326 None:intergenic 55.0%
!!! TCGGAGCCGTTTGTTTTGGC+GGG - chr8_1:56182390-56182409 Msa1202580:intron 55.0%
GTACGCCCCGCCAAAACAAA+CGG + chr8_1:56182399-56182418 None:intergenic 55.0%
CGGAGAAAGACTCGGCATTC+AGG + chr8_1:56182457-56182476 None:intergenic 55.0%
! TGCCCCTGGGGCATTAGTTA+AGG + chr8_1:56183022-56183041 None:intergenic 55.0%
GAGAGAAGCAGAGAAACGGG+AGG - chr8_1:56183067-56183086 Msa1202580:intron 55.0%
AAGCAGAGAAACGGGAGGCA+TGG - chr8_1:56183072-56183091 Msa1202580:intron 55.0%
! CGGGAGGCATGGAAGAAGAA+AGG - chr8_1:56183083-56183102 Msa1202580:intron 55.0%
CAGAACCTCCAGTGCTCTTG+TGG + chr8_1:56183945-56183964 None:intergenic 55.0%
CAGCGCACCGAAATTGGCAC+TGG + chr8_1:56182028-56182047 None:intergenic 60.0%
! CAGTGCCAATTTCGGTGCGC+TGG - chr8_1:56182026-56182045 Msa1202580:intron 60.0%
GCTGTAAGGCGGAGCGAATC+CGG + chr8_1:56182229-56182248 None:intergenic 60.0%
GGGCCACACACGTGCTACAA+TGG + chr8_1:56182272-56182291 None:intergenic 60.0%
GTGTGTGGCCCAGCCCATAA+AGG - chr8_1:56182281-56182300 Msa1202580:intron 60.0%
CCGCATGGCCTTTATGGGCT+GGG + chr8_1:56182292-56182311 None:intergenic 60.0%
CCCAGCCCATAAAGGCCATG+CGG - chr8_1:56182289-56182308 Msa1202580:intron 60.0%
TCCGCATGGCCTTTATGGGC+TGG + chr8_1:56182293-56182312 None:intergenic 60.0%
GGTGCATGCTGCACTCACGA+GGG + chr8_1:56182358-56182377 None:intergenic 60.0%
AGGTGCATGCTGCACTCACG+AGG + chr8_1:56182359-56182378 None:intergenic 60.0%
!!! CGGAGCCGTTTGTTTTGGCG+GGG - chr8_1:56182391-56182410 Msa1202580:intron 60.0%
CCGGTGGTGTGGTACGTAGT+GGG + chr8_1:56182426-56182445 None:intergenic 60.0%
CCCACTACGTACCACACCAC+CGG - chr8_1:56182423-56182442 Msa1202580:intron 60.0%
CCACTACGTACCACACCACC+GGG - chr8_1:56182424-56182443 Msa1202580:intron 60.0%
GTTGGCGGCGGAGAAAGACT+CGG + chr8_1:56182465-56182484 None:intergenic 60.0%
!! AACAGGCTTCGAGTTGGCGG+CGG + chr8_1:56182477-56182496 None:intergenic 60.0%
CCCGGTGGTGTGGTACGTAG+TGG + chr8_1:56182427-56182446 None:intergenic 65.0%
CTACGTACCACACCACCGGG+CGG - chr8_1:56182427-56182446 Msa1202580:intron 65.0%
CATTCAGGCGAGCCGCCCGG+TGG + chr8_1:56182442-56182461 None:intergenic 75.0%
CGGCATTCAGGCGAGCCGCC+CGG + chr8_1:56182445-56182464 None:intergenic 75.0%
! AGGCGAGCCGCCCGGTGGTG+TGG + chr8_1:56182437-56182456 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 56179240 56184475 56179240 ID=Msa1202580;Name=Msa1202580
chr8_1 mRNA 56179240 56184475 56179240 ID=Msa1202580-mRNA-1;Parent=Msa1202580;Name=Msa1202580-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.87|0.88|1|0.75|0.77|9|308|286
chr8_1 exon 56179240 56179660 56179240 ID=Msa1202580-mRNA-1:exon:18283;Parent=Msa1202580-mRNA-1
chr8_1 exon 56179738 56179835 56179738 ID=Msa1202580-mRNA-1:exon:18282;Parent=Msa1202580-mRNA-1
chr8_1 exon 56180117 56180178 56180117 ID=Msa1202580-mRNA-1:exon:18281;Parent=Msa1202580-mRNA-1
chr8_1 exon 56180323 56180395 56180323 ID=Msa1202580-mRNA-1:exon:18280;Parent=Msa1202580-mRNA-1
chr8_1 exon 56180505 56180614 56180505 ID=Msa1202580-mRNA-1:exon:18279;Parent=Msa1202580-mRNA-1
chr8_1 exon 56180948 56180995 56180948 ID=Msa1202580-mRNA-1:exon:18278;Parent=Msa1202580-mRNA-1
chr8_1 exon 56183699 56183773 56183699 ID=Msa1202580-mRNA-1:exon:18277;Parent=Msa1202580-mRNA-1
chr8_1 exon 56184113 56184202 56184113 ID=Msa1202580-mRNA-1:exon:18276;Parent=Msa1202580-mRNA-1
chr8_1 exon 56184284 56184475 56184284 ID=Msa1202580-mRNA-1:exon:18275;Parent=Msa1202580-mRNA-1
chr8_1 CDS 56184284 56184475 56184284 ID=Msa1202580-mRNA-1:cds;Parent=Msa1202580-mRNA-1
chr8_1 CDS 56184113 56184202 56184113 ID=Msa1202580-mRNA-1:cds;Parent=Msa1202580-mRNA-1
chr8_1 CDS 56183699 56183773 56183699 ID=Msa1202580-mRNA-1:cds;Parent=Msa1202580-mRNA-1
chr8_1 CDS 56180948 56180995 56180948 ID=Msa1202580-mRNA-1:cds;Parent=Msa1202580-mRNA-1
chr8_1 CDS 56180505 56180614 56180505 ID=Msa1202580-mRNA-1:cds;Parent=Msa1202580-mRNA-1
chr8_1 CDS 56180323 56180395 56180323 ID=Msa1202580-mRNA-1:cds;Parent=Msa1202580-mRNA-1
chr8_1 CDS 56180117 56180178 56180117 ID=Msa1202580-mRNA-1:cds;Parent=Msa1202580-mRNA-1
chr8_1 CDS 56179738 56179835 56179738 ID=Msa1202580-mRNA-1:cds;Parent=Msa1202580-mRNA-1
chr8_1 CDS 56179548 56179660 56179548 ID=Msa1202580-mRNA-1:cds;Parent=Msa1202580-mRNA-1
chr8_1 three_prime_UTR 56179240 56179547 56179240 ID=Msa1202580-mRNA-1:three_prime_utr;Parent=Msa1202580-mRNA-1
Gene Sequence

>Msa1202580

CGAAAATTGAGCTCTAAACAGCCCAGCCCATTTCCATTCTGTTCCTCCCTCCTTCACAAATCTCTGCAACTTCAAATTCCATCATTCCCAACAACAATAAAGCTTCAATCTTTGAACAAATTTTTGCCTCCTGAGCTTAGCACTCGCATTCAAATTTCATTTTCACCTTCTTCATCCAGATCTCATAAAACGATAAAGATGAATCCAGACGCTGTAAAGTCGACTCTCACCAATCTCGCATTTGGAAACGTAATTGCAGCAGCTGCTCGTAATTATCAAAAGGAATTGCTTAGTGAAGAGAAGGCAGCACAATCGAGTTCTATAAACGAGGAGGTTGACCTTGATGATTTGATGGATGATCCTGAATTGGAAAAATTGCATGCAGACAGGATTGCAGCTTTTAAGAAAGGTCATGGTGAATTTAGAGAGGTAACTGAAGGGGATTTCTTGGGTGAAGTCACTGGAAGTGAAAAAGTGATTTGTCATTTCTATCATAAGGAGTTCTACCGATGCAAGATAATGGATAAACACTTAAAGTCCCTTTCAACAAAGCATATTGATACAAAGTTCATCAGGCTTGATGCAGAGAATGCACCGTTCTTTGTTGCAAAATTGGCAATCAAGACTTTGCCTTGTGTCATACTGTTCAGACAAGGAGTTGCAGTAGATAGATTGGTAGGGTTTCAAGATCTTGGAGCGAAAGACGATTTTTCCACAAGAGCACTGGAGGTTCTGCTGATAAAGAAAGGTATTATTGCCGAGAAAAAAGATGTGGATGAAGAAGATCAAGAATACGATGAAAGTAAACGTAGATCCGTTAGATCTTCAGCGGCTGCTGATTCTGATTCTGATTCTGATTAA

Protein sequence

>Msa1202580

RKLSSKQPSPFPFCSSLLHKSLQLQIPSFPTTIKLQSLNKFLPPELSTRIQISFSPSSSRSHKTIKMNPDAVKSTLTNLAFGNVIAAAARNYQKELLSEEKAAQSSSINEEVDLDDLMDDPELEKLHADRIAAFKKGHGEFREVTEGDFLGEVTGSEKVICHFYHKEFYRCKIMDKHLKSLSTKHIDTKFIRLDAENAPFFVAKLAIKTLPCVILFRQGVAVDRLVGFQDLGAKDDFSTRALEVLLIKKGIIAEKKDVDEEDQEYDESKRRSVRSSAAADSDSDSD*