Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714480 | XP_003611661.1 | 86.667 | 180 | 20 | 2 | 1 | 179 | 1 | 177 | 2.11e-105 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714480 | G7K582 | 86.667 | 180 | 20 | 2 | 1 | 179 | 1 | 177 | 1.01e-105 | 310 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036580 | Msa0714480 | 0.828852 | 7.138909e-55 | -8.615850e-47 |
| Msa0714480 | Msa0747500 | 0.806048 | 9.937079e-50 | -8.615850e-47 |
| Msa0714480 | Msa0896990 | 0.800810 | 1.210194e-48 | -8.615850e-47 |
| Msa0714480 | Msa1046220 | 0.816465 | 5.452481e-52 | -8.615850e-47 |
| Msa0714480 | Msa1219780 | 0.809714 | 1.650975e-50 | -8.615850e-47 |
| Msa0714480 | Msa1221170 | 0.844466 | 7.429305e-59 | -8.615850e-47 |
| Msa0714480 | Msa1265500 | 0.817996 | 2.468224e-52 | -8.615850e-47 |
| Msa0714480 | Msa1266710 | 0.808708 | 2.712063e-50 | -8.615850e-47 |
| Msa0714480 | Msa1395690 | 0.815033 | 1.137593e-51 | -8.615850e-47 |
| Msa0714480 | Msa1407210 | 0.803948 | 2.732309e-49 | -8.615850e-47 |
| Msa0139270 | Msa0714480 | 0.815065 | 1.119073e-51 | -8.615850e-47 |
| Msa0176620 | Msa0714480 | 0.819861 | 9.299449e-53 | -8.615850e-47 |
| Msa0197750 | Msa0714480 | 0.808494 | 3.013149e-50 | -8.615850e-47 |
| Msa0424240 | Msa0714480 | 0.820165 | 7.922398e-53 | -8.615850e-47 |
| Msa0478400 | Msa0714480 | 0.807889 | 4.054743e-50 | -8.615850e-47 |
| Msa0318370 | Msa0714480 | 0.802266 | 6.085549e-49 | -8.615850e-47 |
| Msa0589730 | Msa0714480 | 0.803400 | 3.549639e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714480 | MtrunA17_Chr5g0401701 | 86.667 | 180 | 20 | 2 | 1 | 179 | 1 | 177 | 1.94e-109 | 310 |
| Msa0714480 | MtrunA17_Chr3g0103711 | 41.379 | 174 | 85 | 7 | 9 | 178 | 6 | 166 | 1.43e-29 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714480 | AT4G37300.1 | 50.000 | 180 | 78 | 4 | 5 | 179 | 1 | 173 | 1.19e-48 | 155 |
Find 53 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAAATGTTTATGATCTA+AGG | 0.133830 | 5_1:-7114942 | Msa0714480:three_prime_UTR |
| TTCGCTTCTGTTGGGTTTGA+TGG | 0.233826 | 5_1:+7115834 | None:intergenic |
| CCTACCATGATGTTGCTGTT+TGG | 0.308657 | 5_1:+7115970 | None:intergenic |
| CATCAAATTGAGCTTTGATT+TGG | 0.317503 | 5_1:+7115875 | None:intergenic |
| CTACCATGATGTTGCTGTTT+GGG | 0.325665 | 5_1:+7115971 | None:intergenic |
| TAGGTGCTCTCGCTCCTATT+TGG | 0.336608 | 5_1:+7115192 | None:intergenic |
| CCAACATCAACATGGCTTGC+AGG | 0.374328 | 5_1:+7115472 | None:intergenic |
| ATGTCTCGTCTAAGCCAAAT+AGG | 0.375552 | 5_1:-7115206 | Msa0714480:CDS |
| GTTGGTGAAAACAAATTTAG+AGG | 0.379408 | 5_1:-7115454 | Msa0714480:CDS |
| ACTTTCCTCAAAGGGATTAG+TGG | 0.385821 | 5_1:-7115713 | Msa0714480:CDS |
| TGATTCAGGTTCGCTTCTGT+TGG | 0.390338 | 5_1:+7115825 | None:intergenic |
| GCAACCCTGCCACAAATGAT+TGG | 0.403822 | 5_1:-7115423 | Msa0714480:CDS |
| TGCATCCACTAATCCCTTTG+AGG | 0.405061 | 5_1:+7115708 | None:intergenic |
| CTGTTTGGGTGTATACTGAA+TGG | 0.420485 | 5_1:+7115985 | None:intergenic |
| CGAGAGCACCTAGATCTTGC+TGG | 0.420928 | 5_1:-7115181 | Msa0714480:exon |
| AGTGATCTTGATTTGTTCCT+CGG | 0.426245 | 5_1:+7115900 | None:intergenic |
| TAAGAGACATTCACTGTGTT+TGG | 0.431217 | 5_1:-7115091 | Msa0714480:three_prime_UTR |
| TCTAAGGGTAATGCTGCTTC+TGG | 0.434351 | 5_1:-7114926 | Msa0714480:three_prime_UTR |
| TGTTTGGGTGTATACTGAAT+GGG | 0.434398 | 5_1:+7115986 | None:intergenic |
| TCGCTTCTGTTGGGTTTGAT+GGG | 0.437632 | 5_1:+7115835 | None:intergenic |
| TAACCTTGATCATGAACATC+TGG | 0.442683 | 5_1:-7115395 | Msa0714480:intron |
| GTTAAAGAAGGAGGTGGAAG+TGG | 0.449369 | 5_1:-7115511 | Msa0714480:CDS |
| TATTAGTATTAGTATCATAA+AGG | 0.457244 | 5_1:-7115016 | Msa0714480:three_prime_UTR |
| CTGTGAAAATAGACAGGAAG+TGG | 0.460529 | 5_1:-7115547 | Msa0714480:intron |
| GGAACCCAATCATTTGTGGC+AGG | 0.462082 | 5_1:+7115418 | None:intergenic |
| AGACATTCACTGTGTTTGGT+TGG | 0.468557 | 5_1:-7115087 | Msa0714480:three_prime_UTR |
| CAGACTATACTTTCCTCAAA+GGG | 0.469094 | 5_1:-7115721 | Msa0714480:CDS |
| TTTATAAAAGCGGTTAAAGA+AGG | 0.472057 | 5_1:-7115523 | Msa0714480:CDS |
| TATCAATAGAAAACAACTCT+TGG | 0.485925 | 5_1:+7115656 | None:intergenic |
| GATTCAGGTTCGCTTCTGTT+GGG | 0.489259 | 5_1:+7115826 | None:intergenic |
| CAACCCTGCCACAAATGATT+GGG | 0.493231 | 5_1:-7115422 | Msa0714480:CDS |
| AGATGTTCATGATCAAGGTT+AGG | 0.495165 | 5_1:+7115397 | None:intergenic |
| CTAATCCTCCAACACCACTT+TGG | 0.504000 | 5_1:-7116010 | None:intergenic |
| GTTAGGAACCCAATCATTTG+TGG | 0.507173 | 5_1:+7115414 | None:intergenic |
| ATACCAGATGTTCATGATCA+AGG | 0.509861 | 5_1:+7115392 | None:intergenic |
| TTAAAATGTTTATGATCTAA+GGG | 0.526928 | 5_1:-7114941 | Msa0714480:three_prime_UTR |
| TATTGATAAACAGCATCATA+CGG | 0.530019 | 5_1:-7115641 | Msa0714480:intron |
| AAAGCGGTTAAAGAAGGAGG+TGG | 0.552729 | 5_1:-7115517 | Msa0714480:CDS |
| ATGCAAATAAAAGCAAAGCT+TGG | 0.552823 | 5_1:+7115134 | None:intergenic |
| AAAACCTCGTCACTACGACT+TGG | 0.560143 | 5_1:+7115928 | None:intergenic |
| GGATGCACAAGATGAATTTG+TGG | 0.562932 | 5_1:-7115692 | Msa0714480:CDS |
| TCAGACTATACTTTCCTCAA+AGG | 0.574625 | 5_1:-7115722 | Msa0714480:CDS |
| ATAAAAGCGGTTAAAGAAGG+AGG | 0.575083 | 5_1:-7115520 | Msa0714480:CDS |
| CCTGCAAGCCATGTTGATGT+TGG | 0.587170 | 5_1:-7115472 | Msa0714480:CDS |
| GAACCCAATCATTTGTGGCA+GGG | 0.594079 | 5_1:+7115419 | None:intergenic |
| AGGAAGTGGGTTTATAAAAG+CGG | 0.597067 | 5_1:-7115533 | Msa0714480:CDS |
| ACACCCAAACAGCAACATCA+TGG | 0.600997 | 5_1:-7115974 | Msa0714480:exon |
| CCAAACAGCAACATCATGGT+AGG | 0.619313 | 5_1:-7115970 | Msa0714480:exon |
| TATTATAAGTTACAACAACA+TGG | 0.657222 | 5_1:+7115037 | None:intergenic |
| TGTGAAAATAGACAGGAAGT+GGG | 0.658962 | 5_1:-7115546 | Msa0714480:intron |
| TATACTGAATGGGGCCAAAG+TGG | 0.663557 | 5_1:+7115996 | None:intergenic |
| GTTTGGGTGTATACTGAATG+GGG | 0.686828 | 5_1:+7115987 | None:intergenic |
| AAAACCAAGTCGTAGTGACG+AGG | 0.696472 | 5_1:-7115932 | Msa0714480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAGTTTTTGTTTTTT+TGG | - | chr5_1:7115320-7115339 | Msa0714480:intron | 10.0% |
| !!! | TTTTTTAGTTTTTGTTTTTT+TGG | - | chr5_1:7115320-7115339 | Msa0714480:intron | 10.0% |
| !! | TATTAGTATTAGTATCATAA+AGG | - | chr5_1:7115881-7115900 | Msa0714480:CDS | 15.0% |
| !! | TTAAAATGTTTATGATCTAA+GGG | - | chr5_1:7115956-7115975 | Msa0714480:CDS | 15.0% |
| !! | TATTAGTATTAGTATCATAA+AGG | - | chr5_1:7115881-7115900 | Msa0714480:CDS | 15.0% |
| !! | TTAAAATGTTTATGATCTAA+GGG | - | chr5_1:7115956-7115975 | Msa0714480:CDS | 15.0% |
| !! | TATTATAAGTTACAACAACA+TGG | + | chr5_1:7115863-7115882 | None:intergenic | 20.0% |
| !!! | ATTTTAAGCGTTGAAAATTA+AGG | + | chr5_1:7115943-7115962 | None:intergenic | 20.0% |
| !! | CTTAAAATGTTTATGATCTA+AGG | - | chr5_1:7115955-7115974 | Msa0714480:CDS | 20.0% |
| !! | TATTATAAGTTACAACAACA+TGG | + | chr5_1:7115863-7115882 | None:intergenic | 20.0% |
| !!! | ATTTTAAGCGTTGAAAATTA+AGG | + | chr5_1:7115943-7115962 | None:intergenic | 20.0% |
| !! | CTTAAAATGTTTATGATCTA+AGG | - | chr5_1:7115955-7115974 | Msa0714480:CDS | 20.0% |
| ! | TATCAATAGAAAACAACTCT+TGG | + | chr5_1:7115244-7115263 | None:intergenic | 25.0% |
| ! | TATTGATAAACAGCATCATA+CGG | - | chr5_1:7115256-7115275 | Msa0714480:intron | 25.0% |
| ! | TTTATAAAAGCGGTTAAAGA+AGG | - | chr5_1:7115374-7115393 | Msa0714480:intron | 25.0% |
| !!! | ATAGATTGTGATTTGTTAAC+AGG | - | chr5_1:7115665-7115684 | Msa0714480:CDS | 25.0% |
| ! | TATCAATAGAAAACAACTCT+TGG | + | chr5_1:7115244-7115263 | None:intergenic | 25.0% |
| ! | TATTGATAAACAGCATCATA+CGG | - | chr5_1:7115256-7115275 | Msa0714480:intron | 25.0% |
| ! | TTTATAAAAGCGGTTAAAGA+AGG | - | chr5_1:7115374-7115393 | Msa0714480:intron | 25.0% |
| !!! | ATAGATTGTGATTTGTTAAC+AGG | - | chr5_1:7115665-7115684 | Msa0714480:CDS | 25.0% |
| ! | CATCAAATTGAGCTTTGATT+TGG | + | chr5_1:7115025-7115044 | None:intergenic | 30.0% |
| ATTGAACTGTGAAAATAGAC+AGG | - | chr5_1:7115344-7115363 | Msa0714480:intron | 30.0% | |
| ! | GTTGGTGAAAACAAATTTAG+AGG | - | chr5_1:7115443-7115462 | Msa0714480:CDS | 30.0% |
| !!! | TTTTTTTTCCAGCAAGATCT+AGG | + | chr5_1:7115727-7115746 | None:intergenic | 30.0% |
| TAGATCTTGCTGGAAAAAAA+AGG | - | chr5_1:7115726-7115745 | Msa0714480:CDS | 30.0% | |
| ATGCAAATAAAAGCAAAGCT+TGG | + | chr5_1:7115766-7115785 | None:intergenic | 30.0% | |
| ! | CATCAAATTGAGCTTTGATT+TGG | + | chr5_1:7115025-7115044 | None:intergenic | 30.0% |
| ATTGAACTGTGAAAATAGAC+AGG | - | chr5_1:7115344-7115363 | Msa0714480:intron | 30.0% | |
| ! | GTTGGTGAAAACAAATTTAG+AGG | - | chr5_1:7115443-7115462 | Msa0714480:CDS | 30.0% |
| !!! | TTTTTTTTCCAGCAAGATCT+AGG | + | chr5_1:7115727-7115746 | None:intergenic | 30.0% |
| TAGATCTTGCTGGAAAAAAA+AGG | - | chr5_1:7115726-7115745 | Msa0714480:CDS | 30.0% | |
| ATGCAAATAAAAGCAAAGCT+TGG | + | chr5_1:7115766-7115785 | None:intergenic | 30.0% | |
| TGTTTGGGTGTATACTGAAT+GGG | + | chr5_1:7114914-7114933 | None:intergenic | 35.0% | |
| !! | AGTGATCTTGATTTGTTCCT+CGG | + | chr5_1:7115000-7115019 | None:intergenic | 35.0% |
| TGAAGAAAAAGTGGAGTCAA+CGG | + | chr5_1:7115108-7115127 | None:intergenic | 35.0% | |
| AATGTTGCGTGAAGAAAAAG+TGG | + | chr5_1:7115117-7115136 | None:intergenic | 35.0% | |
| !!! | GATTGAAGTTTTTCAAGCTC+TGG | + | chr5_1:7115140-7115159 | None:intergenic | 35.0% |
| TCAGACTATACTTTCCTCAA+AGG | - | chr5_1:7115175-7115194 | Msa0714480:exon | 35.0% | |
| CAGACTATACTTTCCTCAAA+GGG | - | chr5_1:7115176-7115195 | Msa0714480:exon | 35.0% | |
| TGTGAAAATAGACAGGAAGT+GGG | - | chr5_1:7115351-7115370 | Msa0714480:intron | 35.0% | |
| ! | AGGAAGTGGGTTTATAAAAG+CGG | - | chr5_1:7115364-7115383 | Msa0714480:intron | 35.0% |
| ATAAAAGCGGTTAAAGAAGG+AGG | - | chr5_1:7115377-7115396 | Msa0714480:intron | 35.0% | |
| ! | TGTTTTCACCAACATCAACA+TGG | + | chr5_1:7115436-7115455 | None:intergenic | 35.0% |
| AGATGTTCATGATCAAGGTT+AGG | + | chr5_1:7115503-7115522 | None:intergenic | 35.0% | |
| TAACCTTGATCATGAACATC+TGG | - | chr5_1:7115502-7115521 | Msa0714480:CDS | 35.0% | |
| ATACCAGATGTTCATGATCA+AGG | + | chr5_1:7115508-7115527 | None:intergenic | 35.0% | |
| GTCAAAGTTCTTTACACGAT+CGG | - | chr5_1:7115611-7115630 | Msa0714480:intron | 35.0% | |
| TAAGAGACATTCACTGTGTT+TGG | - | chr5_1:7115806-7115825 | Msa0714480:CDS | 35.0% | |
| TGTTTGGGTGTATACTGAAT+GGG | + | chr5_1:7114914-7114933 | None:intergenic | 35.0% | |
| !! | AGTGATCTTGATTTGTTCCT+CGG | + | chr5_1:7115000-7115019 | None:intergenic | 35.0% |
| TGAAGAAAAAGTGGAGTCAA+CGG | + | chr5_1:7115108-7115127 | None:intergenic | 35.0% | |
| AATGTTGCGTGAAGAAAAAG+TGG | + | chr5_1:7115117-7115136 | None:intergenic | 35.0% | |
| !!! | GATTGAAGTTTTTCAAGCTC+TGG | + | chr5_1:7115140-7115159 | None:intergenic | 35.0% |
| TCAGACTATACTTTCCTCAA+AGG | - | chr5_1:7115175-7115194 | Msa0714480:exon | 35.0% | |
| CAGACTATACTTTCCTCAAA+GGG | - | chr5_1:7115176-7115195 | Msa0714480:exon | 35.0% | |
| TGTGAAAATAGACAGGAAGT+GGG | - | chr5_1:7115351-7115370 | Msa0714480:intron | 35.0% | |
| ! | AGGAAGTGGGTTTATAAAAG+CGG | - | chr5_1:7115364-7115383 | Msa0714480:intron | 35.0% |
| ATAAAAGCGGTTAAAGAAGG+AGG | - | chr5_1:7115377-7115396 | Msa0714480:intron | 35.0% | |
| ! | TGTTTTCACCAACATCAACA+TGG | + | chr5_1:7115436-7115455 | None:intergenic | 35.0% |
| AGATGTTCATGATCAAGGTT+AGG | + | chr5_1:7115503-7115522 | None:intergenic | 35.0% | |
| TAACCTTGATCATGAACATC+TGG | - | chr5_1:7115502-7115521 | Msa0714480:CDS | 35.0% | |
| ATACCAGATGTTCATGATCA+AGG | + | chr5_1:7115508-7115527 | None:intergenic | 35.0% | |
| GTCAAAGTTCTTTACACGAT+CGG | - | chr5_1:7115611-7115630 | Msa0714480:intron | 35.0% | |
| TAAGAGACATTCACTGTGTT+TGG | - | chr5_1:7115806-7115825 | Msa0714480:CDS | 35.0% | |
| GTTTGGGTGTATACTGAATG+GGG | + | chr5_1:7114913-7114932 | None:intergenic | 40.0% | |
| CTGTTTGGGTGTATACTGAA+TGG | + | chr5_1:7114915-7114934 | None:intergenic | 40.0% | |
| !! | CTACCATGATGTTGCTGTTT+GGG | + | chr5_1:7114929-7114948 | None:intergenic | 40.0% |
| !! | TTGGGTTTGATGGGTCTTTT+AGG | + | chr5_1:7115056-7115075 | None:intergenic | 40.0% |
| AAGAAAAAGTGGAGTCAACG+GGG | + | chr5_1:7115106-7115125 | None:intergenic | 40.0% | |
| GAAGAAAAAGTGGAGTCAAC+GGG | + | chr5_1:7115107-7115126 | None:intergenic | 40.0% | |
| ACTTTCCTCAAAGGGATTAG+TGG | - | chr5_1:7115184-7115203 | Msa0714480:exon | 40.0% | |
| GGATGCACAAGATGAATTTG+TGG | - | chr5_1:7115205-7115224 | Msa0714480:CDS | 40.0% | |
| CTGTGAAAATAGACAGGAAG+TGG | - | chr5_1:7115350-7115369 | Msa0714480:intron | 40.0% | |
| GTTAGGAACCCAATCATTTG+TGG | + | chr5_1:7115486-7115505 | None:intergenic | 40.0% | |
| ATGTCTCGTCTAAGCCAAAT+AGG | - | chr5_1:7115691-7115710 | Msa0714480:CDS | 40.0% | |
| AGACATTCACTGTGTTTGGT+TGG | - | chr5_1:7115810-7115829 | Msa0714480:CDS | 40.0% | |
| GTTTGGGTGTATACTGAATG+GGG | + | chr5_1:7114913-7114932 | None:intergenic | 40.0% | |
| CTGTTTGGGTGTATACTGAA+TGG | + | chr5_1:7114915-7114934 | None:intergenic | 40.0% | |
| !! | CTACCATGATGTTGCTGTTT+GGG | + | chr5_1:7114929-7114948 | None:intergenic | 40.0% |
| !! | TTGGGTTTGATGGGTCTTTT+AGG | + | chr5_1:7115056-7115075 | None:intergenic | 40.0% |
| AAGAAAAAGTGGAGTCAACG+GGG | + | chr5_1:7115106-7115125 | None:intergenic | 40.0% | |
| GAAGAAAAAGTGGAGTCAAC+GGG | + | chr5_1:7115107-7115126 | None:intergenic | 40.0% | |
| ACTTTCCTCAAAGGGATTAG+TGG | - | chr5_1:7115184-7115203 | Msa0714480:exon | 40.0% | |
| GGATGCACAAGATGAATTTG+TGG | - | chr5_1:7115205-7115224 | Msa0714480:CDS | 40.0% | |
| CTGTGAAAATAGACAGGAAG+TGG | - | chr5_1:7115350-7115369 | Msa0714480:intron | 40.0% | |
| GTTAGGAACCCAATCATTTG+TGG | + | chr5_1:7115486-7115505 | None:intergenic | 40.0% | |
| ATGTCTCGTCTAAGCCAAAT+AGG | - | chr5_1:7115691-7115710 | Msa0714480:CDS | 40.0% | |
| AGACATTCACTGTGTTTGGT+TGG | - | chr5_1:7115810-7115829 | Msa0714480:CDS | 40.0% | |
| TATACTGAATGGGGCCAAAG+TGG | + | chr5_1:7114904-7114923 | None:intergenic | 45.0% | |
| ACACCCAAACAGCAACATCA+TGG | - | chr5_1:7114923-7114942 | Msa0714480:three_prime_UTR | 45.0% | |
| ! | CCTACCATGATGTTGCTGTT+TGG | + | chr5_1:7114930-7114949 | None:intergenic | 45.0% |
| CCAAACAGCAACATCATGGT+AGG | - | chr5_1:7114927-7114946 | Msa0714480:three_prime_UTR | 45.0% | |
| AAAACCAAGTCGTAGTGACG+AGG | - | chr5_1:7114965-7114984 | Msa0714480:three_prime_UTR | 45.0% | |
| AAAACCTCGTCACTACGACT+TGG | + | chr5_1:7114972-7114991 | None:intergenic | 45.0% | |
| TCGCTTCTGTTGGGTTTGAT+GGG | + | chr5_1:7115065-7115084 | None:intergenic | 45.0% | |
| TTCGCTTCTGTTGGGTTTGA+TGG | + | chr5_1:7115066-7115085 | None:intergenic | 45.0% | |
| ! | GATTCAGGTTCGCTTCTGTT+GGG | + | chr5_1:7115074-7115093 | None:intergenic | 45.0% |
| ! | TGATTCAGGTTCGCTTCTGT+TGG | + | chr5_1:7115075-7115094 | None:intergenic | 45.0% |
| !!! | ACGGGGTTTTGTTGTGATTC+AGG | + | chr5_1:7115089-7115108 | None:intergenic | 45.0% |
| TGCATCCACTAATCCCTTTG+AGG | + | chr5_1:7115192-7115211 | None:intergenic | 45.0% | |
| AAAGCGGTTAAAGAAGGAGG+TGG | - | chr5_1:7115380-7115399 | Msa0714480:intron | 45.0% | |
| GTTAAAGAAGGAGGTGGAAG+TGG | - | chr5_1:7115386-7115405 | Msa0714480:intron | 45.0% | |
| CAACCCTGCCACAAATGATT+GGG | - | chr5_1:7115475-7115494 | Msa0714480:CDS | 45.0% | |
| GAACCCAATCATTTGTGGCA+GGG | + | chr5_1:7115481-7115500 | None:intergenic | 45.0% | |
| ! | TCTAAGGGTAATGCTGCTTC+TGG | - | chr5_1:7115971-7115990 | Msa0714480:exon | 45.0% |
| TATACTGAATGGGGCCAAAG+TGG | + | chr5_1:7114904-7114923 | None:intergenic | 45.0% | |
| ACACCCAAACAGCAACATCA+TGG | - | chr5_1:7114923-7114942 | Msa0714480:three_prime_UTR | 45.0% | |
| ! | CCTACCATGATGTTGCTGTT+TGG | + | chr5_1:7114930-7114949 | None:intergenic | 45.0% |
| CCAAACAGCAACATCATGGT+AGG | - | chr5_1:7114927-7114946 | Msa0714480:three_prime_UTR | 45.0% | |
| AAAACCAAGTCGTAGTGACG+AGG | - | chr5_1:7114965-7114984 | Msa0714480:three_prime_UTR | 45.0% | |
| AAAACCTCGTCACTACGACT+TGG | + | chr5_1:7114972-7114991 | None:intergenic | 45.0% | |
| TCGCTTCTGTTGGGTTTGAT+GGG | + | chr5_1:7115065-7115084 | None:intergenic | 45.0% | |
| TTCGCTTCTGTTGGGTTTGA+TGG | + | chr5_1:7115066-7115085 | None:intergenic | 45.0% | |
| ! | GATTCAGGTTCGCTTCTGTT+GGG | + | chr5_1:7115074-7115093 | None:intergenic | 45.0% |
| ! | TGATTCAGGTTCGCTTCTGT+TGG | + | chr5_1:7115075-7115094 | None:intergenic | 45.0% |
| !!! | ACGGGGTTTTGTTGTGATTC+AGG | + | chr5_1:7115089-7115108 | None:intergenic | 45.0% |
| TGCATCCACTAATCCCTTTG+AGG | + | chr5_1:7115192-7115211 | None:intergenic | 45.0% | |
| AAAGCGGTTAAAGAAGGAGG+TGG | - | chr5_1:7115380-7115399 | Msa0714480:intron | 45.0% | |
| GTTAAAGAAGGAGGTGGAAG+TGG | - | chr5_1:7115386-7115405 | Msa0714480:intron | 45.0% | |
| CAACCCTGCCACAAATGATT+GGG | - | chr5_1:7115475-7115494 | Msa0714480:CDS | 45.0% | |
| GAACCCAATCATTTGTGGCA+GGG | + | chr5_1:7115481-7115500 | None:intergenic | 45.0% | |
| ! | TCTAAGGGTAATGCTGCTTC+TGG | - | chr5_1:7115971-7115990 | Msa0714480:exon | 45.0% |
| !!! | TGACGAGGTTTTGAACACCG+AGG | - | chr5_1:7114980-7114999 | Msa0714480:three_prime_UTR | 50.0% |
| ! | CCAACATCAACATGGCTTGC+AGG | + | chr5_1:7115428-7115447 | None:intergenic | 50.0% |
| CCTGCAAGCCATGTTGATGT+TGG | - | chr5_1:7115425-7115444 | Msa0714480:CDS | 50.0% | |
| GCAACCCTGCCACAAATGAT+TGG | - | chr5_1:7115474-7115493 | Msa0714480:CDS | 50.0% | |
| GGAACCCAATCATTTGTGGC+AGG | + | chr5_1:7115482-7115501 | None:intergenic | 50.0% | |
| TAGGTGCTCTCGCTCCTATT+TGG | + | chr5_1:7115708-7115727 | None:intergenic | 50.0% | |
| !!! | TGACGAGGTTTTGAACACCG+AGG | - | chr5_1:7114980-7114999 | Msa0714480:three_prime_UTR | 50.0% |
| ! | CCAACATCAACATGGCTTGC+AGG | + | chr5_1:7115428-7115447 | None:intergenic | 50.0% |
| CCTGCAAGCCATGTTGATGT+TGG | - | chr5_1:7115425-7115444 | Msa0714480:CDS | 50.0% | |
| GCAACCCTGCCACAAATGAT+TGG | - | chr5_1:7115474-7115493 | Msa0714480:CDS | 50.0% | |
| GGAACCCAATCATTTGTGGC+AGG | + | chr5_1:7115482-7115501 | None:intergenic | 50.0% | |
| TAGGTGCTCTCGCTCCTATT+TGG | + | chr5_1:7115708-7115727 | None:intergenic | 50.0% | |
| !! | CGAGAGCACCTAGATCTTGC+TGG | - | chr5_1:7115716-7115735 | Msa0714480:CDS | 55.0% |
| !! | CGAGAGCACCTAGATCTTGC+TGG | - | chr5_1:7115716-7115735 | Msa0714480:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 7114900 | 7116019 | 7114900 | ID=Msa0714480;Name=Msa0714480 |
| chr5_1 | mRNA | 7114900 | 7116019 | 7114900 | ID=Msa0714480-mRNA-1;Parent=Msa0714480;Name=Msa0714480-mRNA-1;_AED=0.11;_eAED=0.11;_QI=42|1|1|1|1|1|3|291|179 |
| chr5_1 | exon | 7114900 | 7115232 | 7114900 | ID=Msa0714480-mRNA-1:exon:2995;Parent=Msa0714480-mRNA-1 |
| chr5_1 | exon | 7115396 | 7115557 | 7115396 | ID=Msa0714480-mRNA-1:exon:2994;Parent=Msa0714480-mRNA-1 |
| chr5_1 | exon | 7115642 | 7116019 | 7115642 | ID=Msa0714480-mRNA-1:exon:2993;Parent=Msa0714480-mRNA-1 |
| chr5_1 | five_prime_UTR | 7115978 | 7116019 | 7115978 | ID=Msa0714480-mRNA-1:five_prime_utr;Parent=Msa0714480-mRNA-1 |
| chr5_1 | CDS | 7115642 | 7115977 | 7115642 | ID=Msa0714480-mRNA-1:cds;Parent=Msa0714480-mRNA-1 |
| chr5_1 | CDS | 7115396 | 7115557 | 7115396 | ID=Msa0714480-mRNA-1:cds;Parent=Msa0714480-mRNA-1 |
| chr5_1 | CDS | 7115191 | 7115232 | 7115191 | ID=Msa0714480-mRNA-1:cds;Parent=Msa0714480-mRNA-1 |
| chr5_1 | three_prime_UTR | 7114900 | 7115190 | 7114900 | ID=Msa0714480-mRNA-1:three_prime_utr;Parent=Msa0714480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
