AlfalfaGEDB | Msa1395690

M. sativa cultivar zhongmu-4 / Msa1395690

KEGG: -
GO: -
PFAM: PF04554.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395690	XP_013469437.1	65.909	132	7	6	157	255	74	200	2.86e-18	94.0
Msa1395690	XP_013469437.1	70.085	234	14	4	1	216	34	229	5.78e-53	184

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395690	A0A072VZJ0	65.909	132	7	6	157	255	74	200	1.37e-18	94.0
Msa1395690	A0A072VZJ0	70.085	234	14	4	1	216	34	229	2.76e-53	184
Msa1395690	A0A072VZJ0	75.309	81	9	3	29	106	174	246	5.06e-11	72.8

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1395690	-0.816660	4.930603e-52	-8.615850e-47
Msa0003470	Msa1395690	-0.830553	2.753074e-55	-8.615850e-47
Msa0005690	Msa1395690	-0.808141	3.583106e-50	-8.615850e-47
Msa0006050	Msa1395690	-0.822844	1.906066e-53	-8.615850e-47
Msa0006700	Msa1395690	-0.843545	1.312145e-58	-8.615850e-47
Msa0008850	Msa1395690	-0.865357	6.264216e-65	-8.615850e-47
Msa0012460	Msa1395690	-0.807017	6.206000e-50	-8.615850e-47
Msa0012780	Msa1395690	0.845816	3.207234e-59	-8.615850e-47
Msa0012810	Msa1395690	0.824247	8.952994e-54	-8.615850e-47
Msa0012820	Msa1395690	0.903556	3.070925e-79	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395690	MtrunA17_Chr1g0199111	70.085	234	14	4	1	216	34	229	5.31e-57	184
Msa1395690	MtrunA17_Chr1g0199111	65.909	132	7	6	157	255	74	200	2.63e-22	94.0
Msa1395690	MtrunA17_Chr1g0199111	75.309	81	9	3	29	106	174	246	9.74e-15	72.8
Msa1395690	MtrunA17_Chr1g0199111	68.421	95	16	4	42	125	171	262	4.47e-12	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 145 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGGGTGGGGAACGTGT+GGG	0.531189	tig0021959:+29624	None:intergenic
AACTGCAGACAAATGCATAT+TGG	0.313140	tig0021959:+29127	None:intergenic
AACTGGGTGGGGAACGTGTG+GGG	0.342140	tig0021959:+29625	None:intergenic
AAGGGACAGATTACTATAAT+AGG	0.237845	tig0021959:+29031	None:intergenic
ACTGCAGACAAATGCATATT+GGG	0.325953	tig0021959:+29128	None:intergenic
ACTGGGTGGGGAACGTGTGG+GGG	0.414643	tig0021959:+29626	None:intergenic
ACTTCTTTGGTGGTGGTGGT+GGG	0.372019	tig0021959:+30026	None:intergenic
AGGAGAATGGTAAACTGGGT+GGG	0.515299	tig0021959:+29613	None:intergenic
AGGGACAGATTACTATAATA+GGG	0.382818	tig0021959:+29032	None:intergenic
AGGGTAGGTGTGATGAACTG+GGG	0.495351	tig0021959:+29838	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACCATATGATGCCAATTAT+GGG	+	tig0021959:29909-29928	None:intergenic	30.0%
TTACCATATGATGCCAATTA+TGG	+	tig0021959:29910-29929	None:intergenic	30.0%
TACCATATGATGCCAATTAT+GGG	+	tig0021959:29909-29928	None:intergenic	30.0%
TTACCATATGATGCCAATTA+TGG	+	tig0021959:29910-29929	None:intergenic	30.0%
TATTTGTAGGACTTCTTTGG+TGG	+	tig0021959:29407-29426	None:intergenic	35.0%
GATTTGTAGTAATAGTGTGG+TGG	+	tig0021959:29857-29876	None:intergenic	35.0%
ACAACTAGATAGCCCATAAT+TGG	-	tig0021959:29894-29913	Msa1395690:CDS	35.0%
TGTTTCAATGCACAAGAGAT+GGG	+	tig0021959:29979-29998	None:intergenic	35.0%
ATGTTTCAATGCACAAGAGA+TGG	+	tig0021959:29980-29999	None:intergenic	35.0%
TTTCATTATCCACAGCTGTA+AGG	-	tig0021959:30263-30282	Msa1395690:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021959	gene	29041	30401	29041	ID=Msa1395690;Name=Msa1395690
tig0021959	mRNA	29041	30401	29041	ID=Msa1395690-mRNA-1;Parent=Msa1395690;Name=Msa1395690-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0\|0.33\|1\|0\|0\|3\|185\|284
tig0021959	exon	29041	29315	29041	ID=Msa1395690-mRNA-1:exon:15026;Parent=Msa1395690-mRNA-1
tig0021959	exon	29604	30131	29604	ID=Msa1395690-mRNA-1:exon:15025;Parent=Msa1395690-mRNA-1
tig0021959	exon	30165	30401	30165	ID=Msa1395690-mRNA-1:exon:15024;Parent=Msa1395690-mRNA-1
tig0021959	CDS	30165	30401	30165	ID=Msa1395690-mRNA-1:cds;Parent=Msa1395690-mRNA-1
tig0021959	CDS	29604	30131	29604	ID=Msa1395690-mRNA-1:cds;Parent=Msa1395690-mRNA-1
tig0021959	CDS	29226	29315	29226	ID=Msa1395690-mRNA-1:cds;Parent=Msa1395690-mRNA-1
tig0021959	three_prime_UTR	29041	29225	29041	ID=Msa1395690-mRNA-1:three_prime_utr;Parent=Msa1395690-mRNA-1

Gene Sequence

>Msa1395690

ATGGCTCTCACTCTTGCATTAGCCATCCTCTTTTTGAGTTTCCCATCTGAAATTTCAGCAAACAAATACTCCTATTCCTCTCCACCACCACCACATTACTCATCTCCTCCACCTCCTCCAGTTCACACCTACCCTAAACCAGTTTACCACTCTCCACCACCCCCAGTTCACACCTACCCTAAACCAGTTTACCATTCTCCACCACCACCAGTTCACAAGTACCCTCACCCTAAACCATACCCTCATCCACACCCAGTCTACCATTCTCCACCACCCCCAGTTCACAAGTACCCTCATCCTCACCCTGTGTACCACTCTCCCCCACCACCACCACCAAAGAAGTCCTACAAATACCCATCTCCACCACCCCCATTCCACAAGTACCCTCACCCTCACCCTGTCTACCATTCCCCACCACCACCAACACCACACAAGAAGCCATACAAGTACCACTCTCCTCCACCCCCAGTTCACACCTACCCTAAACCAGTCTACCACTCTCCTCCACCCCCAGTTCATCACACCTACCCTAAACCAGTCTACCACTCTCCTCCACCCCCAGTTCACACCTACCCTCACCCTAAACCAGTCTACCACTCTCCACCACCACCAGTTCACACTTACCCTAAGCCAATCTACCACTCTCCTCCACCCCCAGTTCACACCTACCCTCACCCAAAACCGGTCTACCACTCTCCACCACCACCAGTTCACACCTACCCCCCACACGTTCCCCACCCAGTTTACCATTCTCCTCCTCCTCCAGATCTAAACAGAAAGTGTGAAAGCAAAGAAAGCCATGCACAAAGAAGATCAAGGGGATTCTTCACATATATTTCGTCAGCATTTGATTAA

Protein sequence

>Msa1395690

MALTLALAILFLSFPSEISANKYSYSSPPPPHYSSPPPPPVHTYPKPVYHSPPPPVHTYPKPVYHSPPPPVHKYPHPKPYPHPHPVYHSPPPPVHKYPHPHPVYHSPPPPPPKKSYKYPSPPPPFHKYPHPHPVYHSPPPPTPHKKPYKYHSPPPPVHTYPKPVYHSPPPPVHHTYPKPVYHSPPPPVHTYPHPKPVYHSPPPPVHTYPKPIYHSPPPPVHTYPHPKPVYHSPPPPVHTYPPHVPHPVYHSPPPPDLNRKCESKESHAQRRSRGFFTYISSAFD*