AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1221170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221170 MtrunA17_Chr4g0072241 96.512 172 6 0 1 172 1 172 5.20e-127 353
Msa1221170 MtrunA17_Chr6g0457461 51.220 164 76 3 7 169 16 176 1.30e-61 188
Msa1221170 MtrunA17_Chr6g0457471 50.000 168 80 3 3 169 15 179 1.37e-61 188
Msa1221170 MtrunA17_Chr7g0215351 51.282 156 72 3 15 169 28 180 8.23e-59 181
Msa1221170 MtrunA17_Chr7g0215421 51.948 154 70 3 15 167 28 178 1.26e-58 181
Msa1221170 MtrunA17_Chr7g0215361 51.948 154 70 3 15 167 28 178 1.37e-58 181
Msa1221170 MtrunA17_Chr7g0215381 51.948 154 70 3 15 167 28 178 1.65e-58 181
Msa1221170 MtrunA17_Chr7g0215431 51.299 154 71 3 15 167 28 178 1.25e-57 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221170 AT1G67090.1 50.000 172 82 3 1 171 11 179 8.05e-62 189
Msa1221170 AT5G38410.1 52.121 165 75 3 8 171 18 179 8.97e-62 189
Msa1221170 AT5G38420.1 52.727 165 74 3 8 171 18 179 9.07e-62 189
Msa1221170 AT5G38430.1 52.121 165 75 3 8 171 18 179 2.32e-61 188
Msa1221170 AT5G38430.2 52.121 165 75 3 8 171 18 179 2.32e-61 188
Msa1221170 AT5G38410.3 50.000 170 76 3 8 171 18 184 2.82e-60 186
Msa1221170 AT5G38410.2 51.220 164 71 4 8 171 18 172 2.80e-58 180
Msa1221170 AT1G67090.2 39.640 111 64 2 1 111 11 118 3.61e-22 87.0

Find 57 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAATTTCCTATTATTAA+TGG 0.204312 8_1:-84692804 None:intergenic
ATCAGAAAGGGGTGGTAAAT+AGG 0.291264 8_1:-84692834 None:intergenic
TTAGTGGCATATGAATAAAA+TGG 0.309190 8_1:+84693716 Msa1221170:three_prime_UTR
ATGGGAGGTATTGGACATTA+TGG 0.311655 8_1:+84693441 Msa1221170:CDS
TCAAATTTCCTATTATTAAT+GGG 0.315443 8_1:-84692803 None:intergenic
CATGGAATCCCATTAATAAT+AGG 0.318513 8_1:+84692795 Msa1221170:CDS
GTTGCTGGCCCTGGCTTTGT+GGG 0.327668 8_1:+84692542 Msa1221170:CDS
GCAGCTTCAGTTGCTGGCCC+TGG 0.329745 8_1:+84692533 Msa1221170:CDS
GCATATGAATAAAATGGATT+TGG 0.334280 8_1:+84693722 Msa1221170:three_prime_UTR
AGTCCAACTCATCAAATCTT+TGG 0.338452 8_1:+84692570 Msa1221170:CDS
GAAGAGAAATAAGAACAAAA+TGG 0.341169 8_1:-84693644 None:intergenic
ACATTTGCAGCTTCAGTTGC+TGG 0.350554 8_1:+84692527 Msa1221170:CDS
AAGCATCTTATATATGCATT+TGG 0.378298 8_1:-84693536 None:intergenic
TAAGTAGTTGTTGTGGTAGT+AGG 0.382906 8_1:-84693611 None:intergenic
TTCAATGGAATAAGTAGTAC+TGG 0.385537 8_1:-84692594 None:intergenic
AGTTGCTGGCCCTGGCTTTG+TGG 0.386009 8_1:+84692541 Msa1221170:CDS
GACTTCAAGCCCACAAAGCC+AGG 0.391842 8_1:-84692551 None:intergenic
GATGAAAGGAAGAAAGGAAT+AGG 0.393693 8_1:-84692445 None:intergenic
GATACTATGATGGGAGGTAT+TGG 0.398812 8_1:+84693432 Msa1221170:CDS
GTACTACTTATTCCATTGAA+TGG 0.406489 8_1:+84692597 Msa1221170:CDS
TTATGGAAGCTACCAATGTT+TGG 0.409185 8_1:+84693458 Msa1221170:CDS
ATTAGTGTATTAATATATCT+TGG 0.413683 8_1:+84693787 Msa1221170:three_prime_UTR
GTAGCGTAGTACTTGTTTAG+TGG 0.420260 8_1:+84693700 Msa1221170:three_prime_UTR
AATAAATGTCTGATCTTTGA+AGG 0.426750 8_1:-84692483 None:intergenic
TGCAATTGAGTCATCAGAAA+GGG 0.441885 8_1:-84692846 None:intergenic
GACTAACCTCATCAAATTCA+AGG 0.447817 8_1:-84692910 None:intergenic
AGTTGAGATGAAAGGAAGAA+AGG 0.465571 8_1:-84692451 None:intergenic
CATCATAGTATCCTGGCATC+TGG 0.482846 8_1:-84693421 None:intergenic
GCAGTGAATCTTAGAACCAT+TGG 0.489711 8_1:-84692636 None:intergenic
AGGAAGAAAGGAATAGGCTT+AGG 0.507763 8_1:-84692439 None:intergenic
CAGATGCCAGGATACTATGA+TGG 0.514747 8_1:+84693422 Msa1221170:CDS
GGCAGAATAGTTGAGATGAA+AGG 0.524279 8_1:-84692459 None:intergenic
GGGCCAAAGATTTGATGAGT+TGG 0.537281 8_1:-84692573 None:intergenic
ATAAAATGGATTTGGAAAGT+CGG 0.537618 8_1:+84693730 Msa1221170:three_prime_UTR
GATTGACTACATGCTCAAGA+AGG 0.539499 8_1:+84692874 Msa1221170:CDS
TACCTCCCATCATAGTATCC+TGG 0.541106 8_1:-84693428 None:intergenic
TTCTGATGACTCAATTGCAA+AGG 0.545642 8_1:+84692850 Msa1221170:CDS
CAAGCGCCACATGCAAGCCA+TGG 0.545894 8_1:+84693571 Msa1221170:CDS
TTTGTGAATAATAAAAGCCA+TGG 0.556871 8_1:-84693588 None:intergenic
TTCTAAGATTCACTGCATGA+AGG 0.557279 8_1:+84692643 Msa1221170:CDS
TTGCAATTGAGTCATCAGAA+AGG 0.572127 8_1:-84692847 None:intergenic
AGAGCAAATAGCCAGATGCC+AGG 0.574689 8_1:+84693410 Msa1221170:CDS
ACCTCATCAAATTCAAGGCA+AGG 0.584505 8_1:-84692905 None:intergenic
AGATGCCAGGATACTATGAT+GGG 0.593649 8_1:+84693423 Msa1221170:CDS
ATTGACTACATGCTCAAGAA+GGG 0.603348 8_1:+84692875 Msa1221170:CDS
ACCTTGCCTTGAATTTGATG+AGG 0.604745 8_1:+84692904 Msa1221170:CDS
AAGACTGAGAATTTCAACAA+AGG 0.606526 8_1:-84693671 None:intergenic
ACTACATGCTCAAGAAGGGA+TGG 0.608538 8_1:+84692879 Msa1221170:CDS
CATTAATTAAGTAGTTGTTG+TGG 0.613494 8_1:-84693618 None:intergenic
ACTTCAAGCCCACAAAGCCA+GGG 0.614433 8_1:-84692550 None:intergenic
TAAAAGCCATGGCTTGCATG+TGG 0.625954 8_1:-84693577 None:intergenic
GCAATTGAGTCATCAGAAAG+GGG 0.629169 8_1:-84692845 None:intergenic
TCAATGGAATAAGTAGTACT+GGG 0.635347 8_1:-84692593 None:intergenic
AAATGTCTGATCTTTGAAGG+AGG 0.660147 8_1:-84692480 None:intergenic
TGCCAGGATACTATGATGGG+AGG 0.662604 8_1:+84693426 Msa1221170:CDS
GAGTCGTTACAACCAAACAT+TGG 0.684048 8_1:-84693470 None:intergenic
ATTGAGTCATCAGAAAGGGG+TGG 0.697277 8_1:-84692842 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTATAAACTAGATTT+AGG - chr8_1:84692939-84692958 None:intergenic 10.0%
!!! TAAATCTAGTTTATAATATA+AGG + chr8_1:84692938-84692957 Msa1221170:intron 10.0%
!!! GTAGTTTTTTTATTATTATA+AGG + chr8_1:84692960-84692979 Msa1221170:intron 10.0%
!! TGTATATCTTATTAATAATA+TGG + chr8_1:84693347-84693366 Msa1221170:intron 10.0%
!! TTATATTATAAACTAGATTT+AGG - chr8_1:84692939-84692958 None:intergenic 10.0%
!!! TAAATCTAGTTTATAATATA+AGG + chr8_1:84692938-84692957 Msa1221170:intron 10.0%
!!! GTAGTTTTTTTATTATTATA+AGG + chr8_1:84692960-84692979 Msa1221170:intron 10.0%
!! TGTATATCTTATTAATAATA+TGG + chr8_1:84693347-84693366 Msa1221170:intron 10.0%
!! TCAAATTTCCTATTATTAAT+GGG - chr8_1:84692806-84692825 None:intergenic 15.0%
!! TTCAAATTTCCTATTATTAA+TGG - chr8_1:84692807-84692826 None:intergenic 15.0%
!! ATTATAAGGAAAAAACAATT+AGG + chr8_1:84692974-84692993 Msa1221170:intron 15.0%
!! GATTCATATAATATAGATTA+AGG + chr8_1:84693027-84693046 Msa1221170:intron 15.0%
!!! AAGTTATACAAAAGTTTTAT+TGG - chr8_1:84693265-84693284 None:intergenic 15.0%
!! ATTAGTGTATTAATATATCT+TGG + chr8_1:84693787-84693806 Msa1221170:three_prime_UTR 15.0%
!! TCAAATTTCCTATTATTAAT+GGG - chr8_1:84692806-84692825 None:intergenic 15.0%
!! TTCAAATTTCCTATTATTAA+TGG - chr8_1:84692807-84692826 None:intergenic 15.0%
!! ATTATAAGGAAAAAACAATT+AGG + chr8_1:84692974-84692993 Msa1221170:intron 15.0%
!! GATTCATATAATATAGATTA+AGG + chr8_1:84693027-84693046 Msa1221170:intron 15.0%
!!! AAGTTATACAAAAGTTTTAT+TGG - chr8_1:84693265-84693284 None:intergenic 15.0%
!! ATTATAAACTAGATTTAGGT+TGG - chr8_1:84692935-84692954 None:intergenic 20.0%
!!! CTTTAATTTATTCTATGAAG+TGG + chr8_1:84693282-84693301 Msa1221170:intron 20.0%
!! TAGAAAACAAAAACATCAAA+AGG - chr8_1:84693322-84693341 None:intergenic 20.0%
!! ATTATAAACTAGATTTAGGT+TGG - chr8_1:84692935-84692954 None:intergenic 20.0%
!!! CTTTAATTTATTCTATGAAG+TGG + chr8_1:84693282-84693301 Msa1221170:intron 20.0%
!! TAGAAAACAAAAACATCAAA+AGG - chr8_1:84693322-84693341 None:intergenic 20.0%
! AATAAATGTCTGATCTTTGA+AGG - chr8_1:84692486-84692505 None:intergenic 25.0%
! ATTTGATTAAAAATGTCTGC+AGG + chr8_1:84692503-84692522 Msa1221170:exon 25.0%
! AACCATGCTATCATAATATA+TGG - chr8_1:84692690-84692709 None:intergenic 25.0%
! ACATATATGTACTAGTATCT+TGG + chr8_1:84692710-84692729 Msa1221170:intron 25.0%
! TTTGTAACTTAAAACAGACA+TGG + chr8_1:84692777-84692796 Msa1221170:intron 25.0%
! ATATAGATTAAGGCAATGTT+TGG + chr8_1:84693037-84693056 Msa1221170:intron 25.0%
! AATATGGAACTTGTATTGTT+TGG + chr8_1:84693363-84693382 Msa1221170:intron 25.0%
! AAGCATCTTATATATGCATT+TGG - chr8_1:84693539-84693558 None:intergenic 25.0%
! TTTGTGAATAATAAAAGCCA+TGG - chr8_1:84693591-84693610 None:intergenic 25.0%
! CATTAATTAAGTAGTTGTTG+TGG - chr8_1:84693621-84693640 None:intergenic 25.0%
! GAAGAGAAATAAGAACAAAA+TGG - chr8_1:84693647-84693666 None:intergenic 25.0%
! TTAGTGGCATATGAATAAAA+TGG + chr8_1:84693716-84693735 Msa1221170:three_prime_UTR 25.0%
!! GCATATGAATAAAATGGATT+TGG + chr8_1:84693722-84693741 Msa1221170:three_prime_UTR 25.0%
!! ATAAAATGGATTTGGAAAGT+CGG + chr8_1:84693730-84693749 Msa1221170:three_prime_UTR 25.0%
! AATAAATGTCTGATCTTTGA+AGG - chr8_1:84692486-84692505 None:intergenic 25.0%
! ATTTGATTAAAAATGTCTGC+AGG + chr8_1:84692503-84692522 Msa1221170:exon 25.0%
! AACCATGCTATCATAATATA+TGG - chr8_1:84692690-84692709 None:intergenic 25.0%
! ACATATATGTACTAGTATCT+TGG + chr8_1:84692710-84692729 Msa1221170:intron 25.0%
! TTTGTAACTTAAAACAGACA+TGG + chr8_1:84692777-84692796 Msa1221170:intron 25.0%
! ATATAGATTAAGGCAATGTT+TGG + chr8_1:84693037-84693056 Msa1221170:intron 25.0%
! AATATGGAACTTGTATTGTT+TGG + chr8_1:84693363-84693382 Msa1221170:intron 25.0%
! AAGCATCTTATATATGCATT+TGG - chr8_1:84693539-84693558 None:intergenic 25.0%
! TTTGTGAATAATAAAAGCCA+TGG - chr8_1:84693591-84693610 None:intergenic 25.0%
! CATTAATTAAGTAGTTGTTG+TGG - chr8_1:84693621-84693640 None:intergenic 25.0%
! GAAGAGAAATAAGAACAAAA+TGG - chr8_1:84693647-84693666 None:intergenic 25.0%
! TTAGTGGCATATGAATAAAA+TGG + chr8_1:84693716-84693735 Msa1221170:three_prime_UTR 25.0%
!! GCATATGAATAAAATGGATT+TGG + chr8_1:84693722-84693741 Msa1221170:three_prime_UTR 25.0%
!! ATAAAATGGATTTGGAAAGT+CGG + chr8_1:84693730-84693749 Msa1221170:three_prime_UTR 25.0%
TCAATGGAATAAGTAGTACT+GGG - chr8_1:84692596-84692615 None:intergenic 30.0%
TTCAATGGAATAAGTAGTAC+TGG - chr8_1:84692597-84692616 None:intergenic 30.0%
GTACTACTTATTCCATTGAA+TGG + chr8_1:84692597-84692616 Msa1221170:CDS 30.0%
! AGTCTTCTTTTTCCATTCAA+TGG - chr8_1:84692612-84692631 None:intergenic 30.0%
AGCCATATATTATGATAGCA+TGG + chr8_1:84692685-84692704 Msa1221170:intron 30.0%
CATGGAATCCCATTAATAAT+AGG + chr8_1:84692795-84692814 Msa1221170:CDS 30.0%
GAACTTGTATTGTTTGGAAA+TGG + chr8_1:84693369-84693388 Msa1221170:intron 30.0%
ATTGTTTGGAAATGGAAGTT+TGG + chr8_1:84693377-84693396 Msa1221170:intron 30.0%
AAGACTGAGAATTTCAACAA+AGG - chr8_1:84693674-84693693 None:intergenic 30.0%
TCAATGGAATAAGTAGTACT+GGG - chr8_1:84692596-84692615 None:intergenic 30.0%
TTCAATGGAATAAGTAGTAC+TGG - chr8_1:84692597-84692616 None:intergenic 30.0%
GTACTACTTATTCCATTGAA+TGG + chr8_1:84692597-84692616 Msa1221170:CDS 30.0%
! AGTCTTCTTTTTCCATTCAA+TGG - chr8_1:84692612-84692631 None:intergenic 30.0%
AGCCATATATTATGATAGCA+TGG + chr8_1:84692685-84692704 Msa1221170:intron 30.0%
CATGGAATCCCATTAATAAT+AGG + chr8_1:84692795-84692814 Msa1221170:CDS 30.0%
GAACTTGTATTGTTTGGAAA+TGG + chr8_1:84693369-84693388 Msa1221170:intron 30.0%
ATTGTTTGGAAATGGAAGTT+TGG + chr8_1:84693377-84693396 Msa1221170:intron 30.0%
AAGACTGAGAATTTCAACAA+AGG - chr8_1:84693674-84693693 None:intergenic 30.0%
GATGAAAGGAAGAAAGGAAT+AGG - chr8_1:84692448-84692467 None:intergenic 35.0%
AGTTGAGATGAAAGGAAGAA+AGG - chr8_1:84692454-84692473 None:intergenic 35.0%
! AAATGTCTGATCTTTGAAGG+AGG - chr8_1:84692483-84692502 None:intergenic 35.0%
AGTCCAACTCATCAAATCTT+TGG + chr8_1:84692570-84692589 Msa1221170:CDS 35.0%
AAAAAGAAGACTGTCTCCAA+TGG + chr8_1:84692620-84692639 Msa1221170:CDS 35.0%
!! TTCTAAGATTCACTGCATGA+AGG + chr8_1:84692643-84692662 Msa1221170:CDS 35.0%
TGCAATTGAGTCATCAGAAA+GGG - chr8_1:84692849-84692868 None:intergenic 35.0%
TTGCAATTGAGTCATCAGAA+AGG - chr8_1:84692850-84692869 None:intergenic 35.0%
TTCTGATGACTCAATTGCAA+AGG + chr8_1:84692850-84692869 Msa1221170:CDS 35.0%
ATTGACTACATGCTCAAGAA+GGG + chr8_1:84692875-84692894 Msa1221170:CDS 35.0%
GACTAACCTCATCAAATTCA+AGG - chr8_1:84692913-84692932 None:intergenic 35.0%
TTATGGAAGCTACCAATGTT+TGG + chr8_1:84693458-84693477 Msa1221170:CDS 35.0%
TAAGTAGTTGTTGTGGTAGT+AGG - chr8_1:84693614-84693633 None:intergenic 35.0%
GATGAAAGGAAGAAAGGAAT+AGG - chr8_1:84692448-84692467 None:intergenic 35.0%
AGTTGAGATGAAAGGAAGAA+AGG - chr8_1:84692454-84692473 None:intergenic 35.0%
! AAATGTCTGATCTTTGAAGG+AGG - chr8_1:84692483-84692502 None:intergenic 35.0%
AGTCCAACTCATCAAATCTT+TGG + chr8_1:84692570-84692589 Msa1221170:CDS 35.0%
AAAAAGAAGACTGTCTCCAA+TGG + chr8_1:84692620-84692639 Msa1221170:CDS 35.0%
!! TTCTAAGATTCACTGCATGA+AGG + chr8_1:84692643-84692662 Msa1221170:CDS 35.0%
TGCAATTGAGTCATCAGAAA+GGG - chr8_1:84692849-84692868 None:intergenic 35.0%
TTGCAATTGAGTCATCAGAA+AGG - chr8_1:84692850-84692869 None:intergenic 35.0%
TTCTGATGACTCAATTGCAA+AGG + chr8_1:84692850-84692869 Msa1221170:CDS 35.0%
ATTGACTACATGCTCAAGAA+GGG + chr8_1:84692875-84692894 Msa1221170:CDS 35.0%
GACTAACCTCATCAAATTCA+AGG - chr8_1:84692913-84692932 None:intergenic 35.0%
TTATGGAAGCTACCAATGTT+TGG + chr8_1:84693458-84693477 Msa1221170:CDS 35.0%
TAAGTAGTTGTTGTGGTAGT+AGG - chr8_1:84693614-84693633 None:intergenic 35.0%
AGGAAGAAAGGAATAGGCTT+AGG - chr8_1:84692442-84692461 None:intergenic 40.0%
GGCAGAATAGTTGAGATGAA+AGG - chr8_1:84692462-84692481 None:intergenic 40.0%
GCAGTGAATCTTAGAACCAT+TGG - chr8_1:84692639-84692658 None:intergenic 40.0%
ATCAGAAAGGGGTGGTAAAT+AGG - chr8_1:84692837-84692856 None:intergenic 40.0%
GCAATTGAGTCATCAGAAAG+GGG - chr8_1:84692848-84692867 None:intergenic 40.0%
GATTGACTACATGCTCAAGA+AGG + chr8_1:84692874-84692893 Msa1221170:CDS 40.0%
ACCTTGCCTTGAATTTGATG+AGG + chr8_1:84692904-84692923 Msa1221170:CDS 40.0%
ACCTCATCAAATTCAAGGCA+AGG - chr8_1:84692908-84692927 None:intergenic 40.0%
AGATGCCAGGATACTATGAT+GGG + chr8_1:84693423-84693442 Msa1221170:CDS 40.0%
! GATACTATGATGGGAGGTAT+TGG + chr8_1:84693432-84693451 Msa1221170:CDS 40.0%
!! ATGGGAGGTATTGGACATTA+TGG + chr8_1:84693441-84693460 Msa1221170:CDS 40.0%
GAGTCGTTACAACCAAACAT+TGG - chr8_1:84693473-84693492 None:intergenic 40.0%
GTAGCGTAGTACTTGTTTAG+TGG + chr8_1:84693700-84693719 Msa1221170:three_prime_UTR 40.0%
AGGAAGAAAGGAATAGGCTT+AGG - chr8_1:84692442-84692461 None:intergenic 40.0%
GGCAGAATAGTTGAGATGAA+AGG - chr8_1:84692462-84692481 None:intergenic 40.0%
GCAGTGAATCTTAGAACCAT+TGG - chr8_1:84692639-84692658 None:intergenic 40.0%
ATCAGAAAGGGGTGGTAAAT+AGG - chr8_1:84692837-84692856 None:intergenic 40.0%
GCAATTGAGTCATCAGAAAG+GGG - chr8_1:84692848-84692867 None:intergenic 40.0%
GATTGACTACATGCTCAAGA+AGG + chr8_1:84692874-84692893 Msa1221170:CDS 40.0%
ACCTTGCCTTGAATTTGATG+AGG + chr8_1:84692904-84692923 Msa1221170:CDS 40.0%
ACCTCATCAAATTCAAGGCA+AGG - chr8_1:84692908-84692927 None:intergenic 40.0%
AGATGCCAGGATACTATGAT+GGG + chr8_1:84693423-84693442 Msa1221170:CDS 40.0%
! GATACTATGATGGGAGGTAT+TGG + chr8_1:84693432-84693451 Msa1221170:CDS 40.0%
!! ATGGGAGGTATTGGACATTA+TGG + chr8_1:84693441-84693460 Msa1221170:CDS 40.0%
GAGTCGTTACAACCAAACAT+TGG - chr8_1:84693473-84693492 None:intergenic 40.0%
GTAGCGTAGTACTTGTTTAG+TGG + chr8_1:84693700-84693719 Msa1221170:three_prime_UTR 40.0%
ACATTTGCAGCTTCAGTTGC+TGG + chr8_1:84692527-84692546 Msa1221170:CDS 45.0%
GGGCCAAAGATTTGATGAGT+TGG - chr8_1:84692576-84692595 None:intergenic 45.0%
ATTGAGTCATCAGAAAGGGG+TGG - chr8_1:84692845-84692864 None:intergenic 45.0%
ACTACATGCTCAAGAAGGGA+TGG + chr8_1:84692879-84692898 Msa1221170:CDS 45.0%
CATCATAGTATCCTGGCATC+TGG - chr8_1:84693424-84693443 None:intergenic 45.0%
CAGATGCCAGGATACTATGA+TGG + chr8_1:84693422-84693441 Msa1221170:CDS 45.0%
TACCTCCCATCATAGTATCC+TGG - chr8_1:84693431-84693450 None:intergenic 45.0%
! TAAAAGCCATGGCTTGCATG+TGG - chr8_1:84693580-84693599 None:intergenic 45.0%
ACATTTGCAGCTTCAGTTGC+TGG + chr8_1:84692527-84692546 Msa1221170:CDS 45.0%
GGGCCAAAGATTTGATGAGT+TGG - chr8_1:84692576-84692595 None:intergenic 45.0%
ATTGAGTCATCAGAAAGGGG+TGG - chr8_1:84692845-84692864 None:intergenic 45.0%
ACTACATGCTCAAGAAGGGA+TGG + chr8_1:84692879-84692898 Msa1221170:CDS 45.0%
CATCATAGTATCCTGGCATC+TGG - chr8_1:84693424-84693443 None:intergenic 45.0%
CAGATGCCAGGATACTATGA+TGG + chr8_1:84693422-84693441 Msa1221170:CDS 45.0%
TACCTCCCATCATAGTATCC+TGG - chr8_1:84693431-84693450 None:intergenic 45.0%
! TAAAAGCCATGGCTTGCATG+TGG - chr8_1:84693580-84693599 None:intergenic 45.0%
ACTTCAAGCCCACAAAGCCA+GGG - chr8_1:84692553-84692572 None:intergenic 50.0%
AGAGCAAATAGCCAGATGCC+AGG + chr8_1:84693410-84693429 Msa1221170:CDS 50.0%
! TGCCAGGATACTATGATGGG+AGG + chr8_1:84693426-84693445 Msa1221170:CDS 50.0%
ACTTCAAGCCCACAAAGCCA+GGG - chr8_1:84692553-84692572 None:intergenic 50.0%
AGAGCAAATAGCCAGATGCC+AGG + chr8_1:84693410-84693429 Msa1221170:CDS 50.0%
! TGCCAGGATACTATGATGGG+AGG + chr8_1:84693426-84693445 Msa1221170:CDS 50.0%
GACTTCAAGCCCACAAAGCC+AGG - chr8_1:84692554-84692573 None:intergenic 55.0%
GACTTCAAGCCCACAAAGCC+AGG - chr8_1:84692554-84692573 None:intergenic 55.0%
!! AGTTGCTGGCCCTGGCTTTG+TGG + chr8_1:84692541-84692560 Msa1221170:CDS 60.0%
!! GTTGCTGGCCCTGGCTTTGT+GGG + chr8_1:84692542-84692561 Msa1221170:CDS 60.0%
CAAGCGCCACATGCAAGCCA+TGG + chr8_1:84693571-84693590 Msa1221170:CDS 60.0%
!! AGTTGCTGGCCCTGGCTTTG+TGG + chr8_1:84692541-84692560 Msa1221170:CDS 60.0%
!! GTTGCTGGCCCTGGCTTTGT+GGG + chr8_1:84692542-84692561 Msa1221170:CDS 60.0%
CAAGCGCCACATGCAAGCCA+TGG + chr8_1:84693571-84693590 Msa1221170:CDS 60.0%
GCAGCTTCAGTTGCTGGCCC+TGG + chr8_1:84692533-84692552 Msa1221170:CDS 65.0%
GCAGCTTCAGTTGCTGGCCC+TGG + chr8_1:84692533-84692552 Msa1221170:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 84692417 84693809 84692417 ID=Msa1221170;Name=Msa1221170
chr8_1 mRNA 84692417 84693809 84692417 ID=Msa1221170-mRNA-1;Parent=Msa1221170;Name=Msa1221170-mRNA-1;_AED=0.08;_eAED=0.08;_QI=98|1|1|1|1|1|3|175|173
chr8_1 exon 84692417 84692664 84692417 ID=Msa1221170-mRNA-1:exon:30437;Parent=Msa1221170-mRNA-1
chr8_1 exon 84692794 84692925 84692794 ID=Msa1221170-mRNA-1:exon:30438;Parent=Msa1221170-mRNA-1
chr8_1 exon 84693395 84693809 84693395 ID=Msa1221170-mRNA-1:exon:30439;Parent=Msa1221170-mRNA-1
chr8_1 five_prime_UTR 84692417 84692514 84692417 ID=Msa1221170-mRNA-1:five_prime_utr;Parent=Msa1221170-mRNA-1
chr8_1 CDS 84692515 84692664 84692515 ID=Msa1221170-mRNA-1:cds;Parent=Msa1221170-mRNA-1
chr8_1 CDS 84692794 84692925 84692794 ID=Msa1221170-mRNA-1:cds;Parent=Msa1221170-mRNA-1
chr8_1 CDS 84693395 84693634 84693395 ID=Msa1221170-mRNA-1:cds;Parent=Msa1221170-mRNA-1
chr8_1 three_prime_UTR 84693635 84693809 84693635 ID=Msa1221170-mRNA-1:three_prime_utr;Parent=Msa1221170-mRNA-1
Gene Sequence

>Msa1221170

ATGTCTGCAGGAACATTTGCAGCTTCAGTTGCTGGCCCTGGCTTTGTGGGCTTGAAGTCCAACTCATCAAATCTTTGGCCCAGTACTACTTATTCCATTGAATGGAAAAAGAAGACTGTCTCCAATGGTTCTAAGATTCACTGCATGAAGACATGGAATCCCATTAATAATAGGAAATTTGAAACACTTTCCTATTTACCACCCCTTTCTGATGACTCAATTGCAAAGGAGATTGACTACATGCTCAAGAAGGGATGGACACCTTGCCTTGAATTTGATGAGTTTGGATGTATTCATAGAGCAAATAGCCAGATGCCAGGATACTATGATGGGAGGTATTGGACATTATGGAAGCTACCAATGTTTGGTTGTAACGACTCTTCACAAGTGCTTAATGAGATTAATGAATGCAAAAAGACATATCCAAATGCATATATAAGATGCTTAGCATTTGACAACAAGCGCCACATGCAAGCCATGGCTTTTATTATTCACAAACCTACTACCACAACAACTACTTAA

Protein sequence

>Msa1221170

MSAGTFAASVAGPGFVGLKSNSSNLWPSTTYSIEWKKKTVSNGSKIHCMKTWNPINNRKFETLSYLPPLSDDSIAKEIDYMLKKGWTPCLEFDEFGCIHRANSQMPGYYDGRYWTLWKLPMFGCNDSSQVLNEINECKKTYPNAYIRCLAFDNKRHMQAMAFIIHKPTTTTTT*