AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0036580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036580 MtrunA17_Chr1g0199111 86.475 244 15 3 1 240 34 263 4.89e-72 223
Msa0036580 MtrunA17_Chr1g0199111 65.909 132 7 6 148 246 74 200 1.75e-22 94.0
Msa0036580 MtrunA17_Chr1g0199111 69.792 96 17 4 42 127 171 264 1.09e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 144 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAGTGGTAGACTGGTTT+AGG 0.210173 1_1:-65184564 None:intergenic
GACTTCTTTGGTGGTGGTGG+TGG 0.218370 1_1:-65184306 None:intergenic
GGGTGAGGGTAGGTGTGAAC+TGG 0.222781 1_1:-65184639 None:intergenic
GGAGAGTGGTAGACCGGTTT+TGG 0.227125 1_1:-65184660 None:intergenic
AAGGGACAGATTACTATAAT+AGG 0.237845 1_1:-65185305 None:intergenic
TGTCACAAGAATAATATAAA+AGG 0.247303 1_1:-65185340 None:intergenic
TTAGGGTAGGTGTGATGAAC+TGG 0.250652 1_1:-65184495 None:intergenic
GGAGAGTGGTAAACTGGTTT+AGG 0.264396 1_1:-65184180 None:intergenic
GGAGAGTGGTAGACTGGTTT+AGG 0.269476 1_1:-65184135 None:intergenic
GGGTGAGGGTAGGTGTGAAC+TGG 0.274431 1_1:-65184543 None:intergenic
GGAGAGTGGTAGACTGGTTT+AGG 0.276912 1_1:-65184465 None:intergenic
GGAGAGTGGTAGACTGGTTT+AGG 0.276912 1_1:-65184513 None:intergenic
AACTGCAGACACATGCATAT+TGG 0.294515 1_1:-65185209 None:intergenic
TTGTGTGGTGTTGGTGGTGG+TGG 0.296778 1_1:-65184396 None:intergenic
CTTCTTTGGTGGTGGTGGTG+GGG 0.304850 1_1:-65184304 None:intergenic
ACTGCAGACACATGCATATT+GGG 0.310062 1_1:-65185208 None:intergenic
GTGAGGGTACTTGTGGAATG+GGG 0.310159 1_1:-65184352 None:intergenic
GGAGGAGGAGAATGGTAAAC+TGG 0.315939 1_1:-65184723 None:intergenic
GGGTAGGTGTGAACTGGTGG+TGG 0.323054 1_1:-65184684 None:intergenic
GGTTTAGGGTAGGTGTGAAC+TGG 0.323634 1_1:-65184450 None:intergenic
GGTGGTGGGGAATGGTAGAC+AGG 0.327301 1_1:-65184381 None:intergenic
TGAGGGTAGGTGTGAACTGG+GGG 0.338637 1_1:-65184540 None:intergenic
TGAGGGTAGGTGTGAACTGG+GGG 0.338637 1_1:-65184636 None:intergenic
GGGTATTTGTAGGACTTCTT+TGG 0.339824 1_1:-65184318 None:intergenic
AACTGGGTGGGGAACGTGTG+GGG 0.342140 1_1:-65184706 None:intergenic
GGGGAATGGACTGGAGGAGG+AGG 0.342363 1_1:-65184738 None:intergenic
GGTGGTGGAGAGTGGTAAAC+TGG 0.347165 1_1:-65184186 None:intergenic
TGTGTGGTGTTGGTGGTGGT+GGG 0.350492 1_1:-65184395 None:intergenic
GGTGAGGGTACTTGTGGAAT+GGG 0.364132 1_1:-65184353 None:intergenic
TAGGTGTGAACTGGTGGTGG+TGG 0.365546 1_1:-65184681 None:intergenic
GGTGGTGGAGAATGGTAGAC+TGG 0.368383 1_1:-65184237 None:intergenic
GTGTTGGTGGTGGTGGGGAA+TGG 0.368418 1_1:-65184389 None:intergenic
ACTTCTTTGGTGGTGGTGGT+GGG 0.372019 1_1:-65184305 None:intergenic
AGGGACAGATTACTATAATA+GGG 0.382818 1_1:-65185304 None:intergenic
TGGTGGTGGTGGAGAGGAAT+AGG 0.383114 1_1:-65184073 None:intergenic
TGAGGGTACTTGTGGAATGG+GGG 0.384288 1_1:-65184351 None:intergenic
GTGAGGGTAGGTGTGAACTG+GGG 0.384890 1_1:-65184541 None:intergenic
TAGGGTAGGTGTGATGAACT+GGG 0.385655 1_1:-65184494 None:intergenic
CCCTTGATCTTCTTTGTGCA+TGG 0.385831 1_1:-65185075 None:intergenic
GGGGAATGGTAGACAGGGTG+AGG 0.393051 1_1:-65184375 None:intergenic
TTAGGGTAGGTGTGAACTGG+GGG 0.394496 1_1:-65184447 None:intergenic
GGTGAGGGTAGGTGTGAACT+GGG 0.397880 1_1:-65184638 None:intergenic
TGGTAGACAGGGTGAGGGTG+AGG 0.399555 1_1:-65184369 None:intergenic
GGTGGAGGAGAGTGGTAGAT+TGG 0.401120 1_1:-65184615 None:intergenic
GTGAGGGTAGGTGTGAACTG+GGG 0.401198 1_1:-65184637 None:intergenic
GGTGAGGGTAGGTGTGAACT+GGG 0.401214 1_1:-65184542 None:intergenic
GGTGGAGGAGAGTGGTAGAC+TGG 0.406838 1_1:-65184471 None:intergenic
GGTGGAGGAGAGTGGTAGAC+TGG 0.406838 1_1:-65184519 None:intergenic
GGTGGTGGAGAGTGGTAGAC+TGG 0.406884 1_1:-65184141 None:intergenic
GGTGGTGGAGAGTGGTAGAC+TGG 0.406884 1_1:-65184570 None:intergenic
GGAGAGTGGTAGATTGGCTT+AGG 0.407710 1_1:-65184609 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.407775 1_1:-65184464 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.407775 1_1:-65184512 None:intergenic
TAGGACTTCTTTGGTGGTGG+TGG 0.413096 1_1:-65184309 None:intergenic
ACTGGGTGGGGAACGTGTGG+GGG 0.414643 1_1:-65184705 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.414873 1_1:-65184563 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.418204 1_1:-65184134 None:intergenic
GAGAGTGGTAAACTGGTTTA+GGG 0.421341 1_1:-65184179 None:intergenic
TTCTTGTGTGGTGTTGGTGG+TGG 0.422729 1_1:-65184399 None:intergenic
GGTGGGGAATGGACTGGAGG+AGG 0.423530 1_1:-65184741 None:intergenic
TAAACTGGGTGGGGAACGTG+TGG 0.424331 1_1:-65184708 None:intergenic
TAGGTGTGAACTGGTGGTGG+TGG 0.425430 1_1:-65184156 None:intergenic
TATGGCTTCTTGTGTGGTGT+TGG 0.430459 1_1:-65184405 None:intergenic
GGGTAGGTGTGAACTGGTGG+TGG 0.432339 1_1:-65184159 None:intergenic
TAGGTGTGAACCGGTGGAGG+TGG 0.432885 1_1:-65184111 None:intergenic
TGGTAGACTGGGTGTGGATG+AGG 0.432940 1_1:-65184225 None:intergenic
GGCTTCTTGTGTGGTGTTGG+TGG 0.438133 1_1:-65184402 None:intergenic
GTTTAGGGTAGGTGTGAACT+GGG 0.438204 1_1:-65184449 None:intergenic
ATTTGATTAAGATTGTTTAG+AGG 0.441210 1_1:+65185123 Msa0036580:exon
GGATGAGGGTACTTGTGAAC+TGG 0.454340 1_1:-65184261 None:intergenic
GGGTGAGGGTACTTGTGGAA+TGG 0.457239 1_1:-65184354 None:intergenic
TTTCATTATCCACAGCTGTA+AGG 0.463114 1_1:+65185179 Msa0036580:three_prime_UTR
TGGTGGAGATGGGTATTTGT+AGG 0.464447 1_1:-65184328 None:intergenic
CACCTACCCTCACCCAAAAC+CGG 0.465185 1_1:+65184647 Msa0036580:CDS
TGGTACACAGGGTGAGGATG+AGG 0.470660 1_1:-65184276 None:intergenic
GGAGGAGAGTGGTACTTGTA+TGG 0.473439 1_1:-65184423 None:intergenic
TAAGTGTGAACTGGTGGTGG+TGG 0.475303 1_1:-65184585 None:intergenic
TACTTGTGAACTGGTGGTGG+TGG 0.478889 1_1:-65184201 None:intergenic
AAAAGGAGTCATAGATGAAA+GGG 0.479457 1_1:-65185323 None:intergenic
GTGTGAACCGGTGGAGGTGG+AGG 0.479749 1_1:-65184108 None:intergenic
TGGTAGACTGGTTTAGGGTG+AGG 0.481256 1_1:-65184558 None:intergenic
GACTGGTTTAGGGTGAGGGT+AGG 0.481274 1_1:-65184553 None:intergenic
GGGTAAGTGTGAACTGGTGG+TGG 0.483553 1_1:-65184588 None:intergenic
TTTGATTAAGATTGTTTAGA+GGG 0.483555 1_1:+65185124 Msa0036580:exon
GAGGAGAATGGTAAACTGGG+TGG 0.487610 1_1:-65184719 None:intergenic
TTGTAGGACTTCTTTGGTGG+TGG 0.488177 1_1:-65184312 None:intergenic
TATTTGTAGGACTTCTTTGG+TGG 0.488416 1_1:-65184315 None:intergenic
CTGGGTGGGGAACGTGTGGG+GGG 0.492090 1_1:-65184704 None:intergenic
GTGTGGTGTTGGTGGTGGTG+GGG 0.493914 1_1:-65184394 None:intergenic
TTGTTTGCTGAAATTTCAGA+TGG 0.495058 1_1:-65184045 None:intergenic
AGGGTAGGTGTGATGAACTG+GGG 0.495351 1_1:-65184493 None:intergenic
TTAGGGTAGGTGTGAACTGG+TGG 0.497727 1_1:-65184162 None:intergenic
GGAGAATGGTAGACTGGGTG+TGG 0.503359 1_1:-65184231 None:intergenic
GATGAGTAATGTGGTGGTGG+TGG 0.503703 1_1:-65184084 None:intergenic
GGGTAGGTGTGAACCGGTGG+AGG 0.512967 1_1:-65184114 None:intergenic
GGCTTAGGGTAAGTGTGAAC+TGG 0.512993 1_1:-65184594 None:intergenic
AGGAGAATGGTAAACTGGGT+GGG 0.515299 1_1:-65184718 None:intergenic
GGTTTAGGGTAGGTGTGAAC+TGG 0.518023 1_1:-65184165 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.521227 1_1:-65184149 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.521227 1_1:-65184578 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.521227 1_1:-65184674 None:intergenic
TAAAAGGAGTCATAGATGAA+AGG 0.521418 1_1:-65185324 None:intergenic
GGAGATGAGTAATGTGGTGG+TGG 0.526418 1_1:-65184087 None:intergenic
CTCATCTCCTCCACCTCCAC+CGG 0.527332 1_1:+65184101 Msa0036580:CDS
GGGTACTTGTGAACTGGTGG+TGG 0.529976 1_1:-65184204 None:intergenic
GGTTTAGGGTAGGTGTGAAC+CGG 0.531173 1_1:-65184120 None:intergenic
AAACTGGGTGGGGAACGTGT+GGG 0.531189 1_1:-65184707 None:intergenic
GGAGAGTGGTACACAGGGTG+AGG 0.537722 1_1:-65184282 None:intergenic
GTGGTAGACTGGTTTAGGGT+AGG 0.540463 1_1:-65184130 None:intergenic
GTGGTAGACTGGTTTAGGGT+AGG 0.540463 1_1:-65184460 None:intergenic
GTGGTAGACTGGTTTAGGGT+AGG 0.540463 1_1:-65184508 None:intergenic
GAGAGTGGTAGATTGGCTTA+GGG 0.544319 1_1:-65184608 None:intergenic
GGTAGACTGGTTTAGGGTGA+GGG 0.550330 1_1:-65184557 None:intergenic
TTAGGGTAGGTGTGAACCGG+TGG 0.552413 1_1:-65184117 None:intergenic
GGTGGTGGAGAGTGGTAGAC+CGG 0.554181 1_1:-65184666 None:intergenic
GGAGAATGGTAAACTGGGTG+GGG 0.556186 1_1:-65184717 None:intergenic
TACTTGTATGGCTTCTTGTG+TGG 0.556733 1_1:-65184411 None:intergenic
GCCATGCACAAAGAAGATCA+AGG 0.557315 1_1:+65185074 Msa0036580:CDS
GTGGTGGAGAATGGTAGACT+GGG 0.561528 1_1:-65184236 None:intergenic
GATGAGGGTACTTGTGAACT+GGG 0.567518 1_1:-65184260 None:intergenic
GGACTGGAGGAGGAGGAGAA+TGG 0.567677 1_1:-65184731 None:intergenic
GAGGAGGAGAATGGTAAACT+GGG 0.569161 1_1:-65184722 None:intergenic
CCATGCACAAAGAAGATCAA+GGG 0.570172 1_1:+65185075 Msa0036580:CDS
GTGGTAAACTGGTTTAGGGT+AGG 0.570919 1_1:-65184175 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.575724 1_1:-65184194 None:intergenic
GGTAGACAGGGTGAGGGTGA+GGG 0.577845 1_1:-65184368 None:intergenic
TTTAGGGTAGGTGTGAACTG+GGG 0.578197 1_1:-65184448 None:intergenic
GGTGAGGGTGAGGGTACTTG+TGG 0.578511 1_1:-65184359 None:intergenic
TTAGGGTAAGTGTGAACTGG+TGG 0.591700 1_1:-65184591 None:intergenic
GGGAATGGTAGACAGGGTGA+GGG 0.591903 1_1:-65184374 None:intergenic
GGGTAGGTGTGATGAACTGG+GGG 0.603246 1_1:-65184492 None:intergenic
GGGGCAGTGCCTTACAGCTG+TGG 0.604123 1_1:-65185188 None:intergenic
GGTAGACTGGGTGTGGATGA+GGG 0.606300 1_1:-65184224 None:intergenic
ATGAGGGTACTTGTGAACTG+GGG 0.632619 1_1:-65184259 None:intergenic
GGGACAGATTACTATAATAG+GGG 0.634663 1_1:-65185303 None:intergenic
GGTGGAGGAGATGAGTAATG+TGG 0.638580 1_1:-65184093 None:intergenic
CTGCAGACACATGCATATTG+GGG 0.638949 1_1:-65185207 None:intergenic
TGTTTGCTGAAATTTCAGAT+GGG 0.639287 1_1:-65184044 None:intergenic
GTGGTGGGGAATGGTAGACA+GGG 0.647557 1_1:-65184380 None:intergenic
CATGCACAAAGAAGATCAAG+GGG 0.648903 1_1:+65185076 Msa0036580:CDS
GGTACACAGGGTGAGGATGA+GGG 0.650631 1_1:-65184275 None:intergenic
GGAGGAGATGAGTAATGTGG+TGG 0.655082 1_1:-65184090 None:intergenic
GTAATGTGGTGGTGGTGGAG+AGG 0.667025 1_1:-65184079 None:intergenic
TGAGGGTACTTGTGAACTGG+GGG 0.698582 1_1:-65184258 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATATTTGTCTCATATT+TGG + chr1_1:65184955-65184974 Msa0036580:intron 15.0%
!! ATTAATATTTGTCTCATATT+TGG + chr1_1:65184955-65184974 Msa0036580:intron 15.0%
!! ATTTGATTAAGATTGTTTAG+AGG + chr1_1:65185123-65185142 Msa0036580:exon 20.0%
!! TTTGATTAAGATTGTTTAGA+GGG + chr1_1:65185124-65185143 Msa0036580:exon 20.0%
!! TGTCACAAGAATAATATAAA+AGG - chr1_1:65185343-65185362 None:intergenic 20.0%
!! ATTTGATTAAGATTGTTTAG+AGG + chr1_1:65185123-65185142 Msa0036580:exon 20.0%
!! TTTGATTAAGATTGTTTAGA+GGG + chr1_1:65185124-65185143 Msa0036580:exon 20.0%
!! TGTCACAAGAATAATATAAA+AGG - chr1_1:65185343-65185362 None:intergenic 20.0%
! TGTCTCATATTTGGTTATTA+AGG + chr1_1:65184964-65184983 Msa0036580:intron 25.0%
! GTCTCATATTTGGTTATTAA+GGG + chr1_1:65184965-65184984 Msa0036580:intron 25.0%
! ACACAAATGCAAATATACAT+TGG - chr1_1:65185021-65185040 None:intergenic 25.0%
! ATGTATATTTGCATTTGTGT+AGG + chr1_1:65185021-65185040 Msa0036580:intron 25.0%
!! GCATTGTAATTTTCAAAGTT+CGG + chr1_1:65185240-65185259 Msa0036580:three_prime_UTR 25.0%
! TGTCTCATATTTGGTTATTA+AGG + chr1_1:65184964-65184983 Msa0036580:intron 25.0%
! GTCTCATATTTGGTTATTAA+GGG + chr1_1:65184965-65184984 Msa0036580:intron 25.0%
! ACACAAATGCAAATATACAT+TGG - chr1_1:65185021-65185040 None:intergenic 25.0%
! ATGTATATTTGCATTTGTGT+AGG + chr1_1:65185021-65185040 Msa0036580:intron 25.0%
!! GCATTGTAATTTTCAAAGTT+CGG + chr1_1:65185240-65185259 Msa0036580:three_prime_UTR 25.0%
! TGTTTGCTGAAATTTCAGAT+GGG - chr1_1:65184047-65184066 None:intergenic 30.0%
! TTGTTTGCTGAAATTTCAGA+TGG - chr1_1:65184048-65184067 None:intergenic 30.0%
TTGCATGAAAAGTTACCATA+TGG - chr1_1:65184838-65184857 None:intergenic 30.0%
AGGGACAGATTACTATAATA+GGG - chr1_1:65185307-65185326 None:intergenic 30.0%
AAGGGACAGATTACTATAAT+AGG - chr1_1:65185308-65185327 None:intergenic 30.0%
AAAAGGAGTCATAGATGAAA+GGG - chr1_1:65185326-65185345 None:intergenic 30.0%
TAAAAGGAGTCATAGATGAA+AGG - chr1_1:65185327-65185346 None:intergenic 30.0%
! TGTTTGCTGAAATTTCAGAT+GGG - chr1_1:65184047-65184066 None:intergenic 30.0%
! TTGTTTGCTGAAATTTCAGA+TGG - chr1_1:65184048-65184067 None:intergenic 30.0%
TTGCATGAAAAGTTACCATA+TGG - chr1_1:65184838-65184857 None:intergenic 30.0%
AGGGACAGATTACTATAATA+GGG - chr1_1:65185307-65185326 None:intergenic 30.0%
AAGGGACAGATTACTATAAT+AGG - chr1_1:65185308-65185327 None:intergenic 30.0%
AAAAGGAGTCATAGATGAAA+GGG - chr1_1:65185326-65185345 None:intergenic 30.0%
TAAAAGGAGTCATAGATGAA+AGG - chr1_1:65185327-65185346 None:intergenic 30.0%
TATTTGTAGGACTTCTTTGG+TGG - chr1_1:65184318-65184337 None:intergenic 35.0%
GATTTGTAGTAATAGTGTGG+TGG - chr1_1:65184768-65184787 None:intergenic 35.0%
! GGTGATTTGTAGTAATAGTG+TGG - chr1_1:65184771-65184790 None:intergenic 35.0%
! AATTATGGGCTATCTAGTTG+TGG - chr1_1:65184806-65184825 None:intergenic 35.0%
ACAACTAGATAGCCCATAAT+TGG + chr1_1:65184805-65184824 Msa0036580:intron 35.0%
TATGGTGTGATGCCAATTAT+GGG - chr1_1:65184820-65184839 None:intergenic 35.0%
ATATGGTGTGATGCCAATTA+TGG - chr1_1:65184821-65184840 None:intergenic 35.0%
ATAATTGGCATCACACCATA+TGG + chr1_1:65184820-65184839 Msa0036580:intron 35.0%
TGTTTCAATGCACAAGAGAT+GGG - chr1_1:65184895-65184914 None:intergenic 35.0%
ATGTTTCAATGCACAAGAGA+TGG - chr1_1:65184896-65184915 None:intergenic 35.0%
! GCATTGAAACATTCTTTTGC+TGG + chr1_1:65184904-65184923 Msa0036580:intron 35.0%
TTTCATTATCCACAGCTGTA+AGG + chr1_1:65185179-65185198 Msa0036580:three_prime_UTR 35.0%
GGGACAGATTACTATAATAG+GGG - chr1_1:65185306-65185325 None:intergenic 35.0%
TATTTGTAGGACTTCTTTGG+TGG - chr1_1:65184318-65184337 None:intergenic 35.0%
GATTTGTAGTAATAGTGTGG+TGG - chr1_1:65184768-65184787 None:intergenic 35.0%
! GGTGATTTGTAGTAATAGTG+TGG - chr1_1:65184771-65184790 None:intergenic 35.0%
! AATTATGGGCTATCTAGTTG+TGG - chr1_1:65184806-65184825 None:intergenic 35.0%
ACAACTAGATAGCCCATAAT+TGG + chr1_1:65184805-65184824 Msa0036580:intron 35.0%
TATGGTGTGATGCCAATTAT+GGG - chr1_1:65184820-65184839 None:intergenic 35.0%
ATATGGTGTGATGCCAATTA+TGG - chr1_1:65184821-65184840 None:intergenic 35.0%
ATAATTGGCATCACACCATA+TGG + chr1_1:65184820-65184839 Msa0036580:intron 35.0%
TGTTTCAATGCACAAGAGAT+GGG - chr1_1:65184895-65184914 None:intergenic 35.0%
ATGTTTCAATGCACAAGAGA+TGG - chr1_1:65184896-65184915 None:intergenic 35.0%
! GCATTGAAACATTCTTTTGC+TGG + chr1_1:65184904-65184923 Msa0036580:intron 35.0%
TTTCATTATCCACAGCTGTA+AGG + chr1_1:65185179-65185198 Msa0036580:three_prime_UTR 35.0%
GGGACAGATTACTATAATAG+GGG - chr1_1:65185306-65185325 None:intergenic 35.0%
TGGGAAACTCAAAAAGAGGA+TGG - chr1_1:65184028-65184047 None:intergenic 40.0%
CAGATGGGAAACTCAAAAAG+AGG - chr1_1:65184032-65184051 None:intergenic 40.0%
! GAGAGTGGTAAACTGGTTTA+GGG - chr1_1:65184182-65184201 None:intergenic 40.0%
GGGTATTTGTAGGACTTCTT+TGG - chr1_1:65184321-65184340 None:intergenic 40.0%
TACTTGTATGGCTTCTTGTG+TGG - chr1_1:65184414-65184433 None:intergenic 40.0%
TTGTAGTAATAGTGTGGTGG+AGG - chr1_1:65184765-65184784 None:intergenic 40.0%
CCATGCACAAAGAAGATCAA+GGG + chr1_1:65185075-65185094 Msa0036580:CDS 40.0%
CATGCACAAAGAAGATCAAG+GGG + chr1_1:65185076-65185095 Msa0036580:CDS 40.0%
ACTGCAGACACATGCATATT+GGG - chr1_1:65185211-65185230 None:intergenic 40.0%
AACTGCAGACACATGCATAT+TGG - chr1_1:65185212-65185231 None:intergenic 40.0%
TGGGAAACTCAAAAAGAGGA+TGG - chr1_1:65184028-65184047 None:intergenic 40.0%
CAGATGGGAAACTCAAAAAG+AGG - chr1_1:65184032-65184051 None:intergenic 40.0%
! GAGAGTGGTAAACTGGTTTA+GGG - chr1_1:65184182-65184201 None:intergenic 40.0%
GGGTATTTGTAGGACTTCTT+TGG - chr1_1:65184321-65184340 None:intergenic 40.0%
TACTTGTATGGCTTCTTGTG+TGG - chr1_1:65184414-65184433 None:intergenic 40.0%
TTGTAGTAATAGTGTGGTGG+AGG - chr1_1:65184765-65184784 None:intergenic 40.0%
CCATGCACAAAGAAGATCAA+GGG + chr1_1:65185075-65185094 Msa0036580:CDS 40.0%
CATGCACAAAGAAGATCAAG+GGG + chr1_1:65185076-65185095 Msa0036580:CDS 40.0%
ACTGCAGACACATGCATATT+GGG - chr1_1:65185211-65185230 None:intergenic 40.0%
AACTGCAGACACATGCATAT+TGG - chr1_1:65185212-65185231 None:intergenic 40.0%
!! GAGAGTGGTAGACTGGTTTA+GGG - chr1_1:65184137-65184156 None:intergenic 45.0%
! GTGGTAAACTGGTTTAGGGT+AGG - chr1_1:65184178-65184197 None:intergenic 45.0%
! GGAGAGTGGTAAACTGGTTT+AGG - chr1_1:65184183-65184202 None:intergenic 45.0%
!! ATGAGGGTACTTGTGAACTG+GGG - chr1_1:65184211-65184230 None:intergenic 45.0%
!! GATGAGGGTACTTGTGAACT+GGG - chr1_1:65184212-65184231 None:intergenic 45.0%
TTGTAGGACTTCTTTGGTGG+TGG - chr1_1:65184315-65184334 None:intergenic 45.0%
TGGTGGAGATGGGTATTTGT+AGG - chr1_1:65184331-65184350 None:intergenic 45.0%
TATGGCTTCTTGTGTGGTGT+TGG - chr1_1:65184408-65184427 None:intergenic 45.0%
! TTTAGGGTAGGTGTGAACTG+GGG - chr1_1:65184166-65184185 None:intergenic 45.0%
! GTTTAGGGTAGGTGTGAACT+GGG - chr1_1:65184167-65184186 None:intergenic 45.0%
!! GAGAGTGGTAGACTGGTTTA+GGG - chr1_1:65184137-65184156 None:intergenic 45.0%
TAGGGTAGGTGTGATGAACT+GGG - chr1_1:65184497-65184516 None:intergenic 45.0%
TTAGGGTAGGTGTGATGAAC+TGG - chr1_1:65184498-65184517 None:intergenic 45.0%
!! GAGAGTGGTAGACTGGTTTA+GGG - chr1_1:65184137-65184156 None:intergenic 45.0%
!! GAGAGTGGTAGACTGGTTTA+GGG - chr1_1:65184137-65184156 None:intergenic 45.0%
TTAGGGTAAGTGTGAACTGG+TGG - chr1_1:65184594-65184613 None:intergenic 45.0%
!! GAGAGTGGTAGATTGGCTTA+GGG - chr1_1:65184611-65184630 None:intergenic 45.0%
AGGAGAATGGTAAACTGGGT+GGG - chr1_1:65184721-65184740 None:intergenic 45.0%
GAGGAGGAGAATGGTAAACT+GGG - chr1_1:65184725-65184744 None:intergenic 45.0%
! AGTAATAGTGTGGTGGAGGT+GGG - chr1_1:65184761-65184780 None:intergenic 45.0%
! TAGTAATAGTGTGGTGGAGG+TGG - chr1_1:65184762-65184781 None:intergenic 45.0%
ATCTAGTTGTGGTAAGGTGG+AGG - chr1_1:65184795-65184814 None:intergenic 45.0%
GCTATCTAGTTGTGGTAAGG+TGG - chr1_1:65184798-65184817 None:intergenic 45.0%
TGGGCTATCTAGTTGTGGTA+AGG - chr1_1:65184801-65184820 None:intergenic 45.0%
GCCATGCACAAAGAAGATCA+AGG + chr1_1:65185074-65185093 Msa0036580:CDS 45.0%
CCCTTGATCTTCTTTGTGCA+TGG - chr1_1:65185078-65185097 None:intergenic 45.0%
CTGCAGACACATGCATATTG+GGG - chr1_1:65185210-65185229 None:intergenic 45.0%
!! GAGAGTGGTAGACTGGTTTA+GGG - chr1_1:65184137-65184156 None:intergenic 45.0%
! GTGGTAAACTGGTTTAGGGT+AGG - chr1_1:65184178-65184197 None:intergenic 45.0%
! GGAGAGTGGTAAACTGGTTT+AGG - chr1_1:65184183-65184202 None:intergenic 45.0%
!! ATGAGGGTACTTGTGAACTG+GGG - chr1_1:65184211-65184230 None:intergenic 45.0%
!! GATGAGGGTACTTGTGAACT+GGG - chr1_1:65184212-65184231 None:intergenic 45.0%
TTGTAGGACTTCTTTGGTGG+TGG - chr1_1:65184315-65184334 None:intergenic 45.0%
TGGTGGAGATGGGTATTTGT+AGG - chr1_1:65184331-65184350 None:intergenic 45.0%
TATGGCTTCTTGTGTGGTGT+TGG - chr1_1:65184408-65184427 None:intergenic 45.0%
! TTTAGGGTAGGTGTGAACTG+GGG - chr1_1:65184166-65184185 None:intergenic 45.0%
! GTTTAGGGTAGGTGTGAACT+GGG - chr1_1:65184167-65184186 None:intergenic 45.0%
!! GAGAGTGGTAGACTGGTTTA+GGG - chr1_1:65184137-65184156 None:intergenic 45.0%
TAGGGTAGGTGTGATGAACT+GGG - chr1_1:65184497-65184516 None:intergenic 45.0%
TTAGGGTAGGTGTGATGAAC+TGG - chr1_1:65184498-65184517 None:intergenic 45.0%
!! GAGAGTGGTAGACTGGTTTA+GGG - chr1_1:65184137-65184156 None:intergenic 45.0%
!! GAGAGTGGTAGACTGGTTTA+GGG - chr1_1:65184137-65184156 None:intergenic 45.0%
TTAGGGTAAGTGTGAACTGG+TGG - chr1_1:65184594-65184613 None:intergenic 45.0%
!! GAGAGTGGTAGATTGGCTTA+GGG - chr1_1:65184611-65184630 None:intergenic 45.0%
AGGAGAATGGTAAACTGGGT+GGG - chr1_1:65184721-65184740 None:intergenic 45.0%
GAGGAGGAGAATGGTAAACT+GGG - chr1_1:65184725-65184744 None:intergenic 45.0%
! AGTAATAGTGTGGTGGAGGT+GGG - chr1_1:65184761-65184780 None:intergenic 45.0%
! TAGTAATAGTGTGGTGGAGG+TGG - chr1_1:65184762-65184781 None:intergenic 45.0%
ATCTAGTTGTGGTAAGGTGG+AGG - chr1_1:65184795-65184814 None:intergenic 45.0%
GCTATCTAGTTGTGGTAAGG+TGG - chr1_1:65184798-65184817 None:intergenic 45.0%
TGGGCTATCTAGTTGTGGTA+AGG - chr1_1:65184801-65184820 None:intergenic 45.0%
GCCATGCACAAAGAAGATCA+AGG + chr1_1:65185074-65185093 Msa0036580:CDS 45.0%
CCCTTGATCTTCTTTGTGCA+TGG - chr1_1:65185078-65185097 None:intergenic 45.0%
CTGCAGACACATGCATATTG+GGG - chr1_1:65185210-65185229 None:intergenic 45.0%
!! GATGAGTAATGTGGTGGTGG+TGG - chr1_1:65184087-65184106 None:intergenic 50.0%
GGAGATGAGTAATGTGGTGG+TGG - chr1_1:65184090-65184109 None:intergenic 50.0%
GGAGGAGATGAGTAATGTGG+TGG - chr1_1:65184093-65184112 None:intergenic 50.0%
GGTGGAGGAGATGAGTAATG+TGG - chr1_1:65184096-65184115 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+CGG - chr1_1:65184123-65184142 None:intergenic 50.0%
!! GTGGTAGACTGGTTTAGGGT+AGG - chr1_1:65184133-65184152 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG - chr1_1:65184138-65184157 None:intergenic 50.0%
TTAGGGTAGGTGTGAACTGG+TGG - chr1_1:65184165-65184184 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+TGG - chr1_1:65184123-65184142 None:intergenic 50.0%
!! TACTTGTGAACTGGTGGTGG+TGG - chr1_1:65184204-65184223 None:intergenic 50.0%
!! TGAGGGTACTTGTGAACTGG+TGG - chr1_1:65184210-65184229 None:intergenic 50.0%
!! GGATGAGGGTACTTGTGAAC+TGG - chr1_1:65184213-65184232 None:intergenic 50.0%
! GTGGTGGAGAATGGTAGACT+GGG - chr1_1:65184239-65184258 None:intergenic 50.0%
!! TGAGGGTACTTGTGAACTGG+GGG - chr1_1:65184210-65184229 None:intergenic 50.0%
!! GGATGAGGGTACTTGTGAAC+TGG - chr1_1:65184213-65184232 None:intergenic 50.0%
!! ACTTCTTTGGTGGTGGTGGT+GGG - chr1_1:65184308-65184327 None:intergenic 50.0%
!! TAGGACTTCTTTGGTGGTGG+TGG - chr1_1:65184312-65184331 None:intergenic 50.0%
!! TGAGGGTACTTGTGGAATGG+GGG - chr1_1:65184354-65184373 None:intergenic 50.0%
!! GTGAGGGTACTTGTGGAATG+GGG - chr1_1:65184355-65184374 None:intergenic 50.0%
!! GGTGAGGGTACTTGTGGAAT+GGG - chr1_1:65184356-65184375 None:intergenic 50.0%
!! TTCTTGTGTGGTGTTGGTGG+TGG - chr1_1:65184402-65184421 None:intergenic 50.0%
GGAGGAGAGTGGTACTTGTA+TGG - chr1_1:65184426-65184445 None:intergenic 50.0%
TTAGGGTAGGTGTGAACTGG+GGG - chr1_1:65184165-65184184 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+TGG - chr1_1:65184123-65184142 None:intergenic 50.0%
!! GTGGTAGACTGGTTTAGGGT+AGG - chr1_1:65184133-65184152 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG - chr1_1:65184138-65184157 None:intergenic 50.0%
AGGGTAGGTGTGATGAACTG+GGG - chr1_1:65184496-65184515 None:intergenic 50.0%
!! GTGGTAGACTGGTTTAGGGT+AGG - chr1_1:65184133-65184152 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG - chr1_1:65184138-65184157 None:intergenic 50.0%
!! GGTAGACTGGTTTAGGGTGA+GGG - chr1_1:65184560-65184579 None:intergenic 50.0%
!! TGGTAGACTGGTTTAGGGTG+AGG - chr1_1:65184561-65184580 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG - chr1_1:65184138-65184157 None:intergenic 50.0%
!! TAAGTGTGAACTGGTGGTGG+TGG - chr1_1:65184588-65184607 None:intergenic 50.0%
GGCTTAGGGTAAGTGTGAAC+TGG - chr1_1:65184597-65184616 None:intergenic 50.0%
!! GGAGAGTGGTAGATTGGCTT+AGG - chr1_1:65184612-65184631 None:intergenic 50.0%
!! GAGAGTGGTAGACCGGTTTT+GGG - chr1_1:65184662-65184681 None:intergenic 50.0%
GGAGAATGGTAAACTGGGTG+GGG - chr1_1:65184720-65184739 None:intergenic 50.0%
GAGGAGAATGGTAAACTGGG+TGG - chr1_1:65184722-65184741 None:intergenic 50.0%
GGAGGAGGAGAATGGTAAAC+TGG - chr1_1:65184726-65184745 None:intergenic 50.0%
! GTAATAGTGTGGTGGAGGTG+GGG - chr1_1:65184760-65184779 None:intergenic 50.0%
TAGTTGTGGTAAGGTGGAGG+AGG - chr1_1:65184792-65184811 None:intergenic 50.0%
!! GATGAGTAATGTGGTGGTGG+TGG - chr1_1:65184087-65184106 None:intergenic 50.0%
GGAGATGAGTAATGTGGTGG+TGG - chr1_1:65184090-65184109 None:intergenic 50.0%
GGAGGAGATGAGTAATGTGG+TGG - chr1_1:65184093-65184112 None:intergenic 50.0%
GGTGGAGGAGATGAGTAATG+TGG - chr1_1:65184096-65184115 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+CGG - chr1_1:65184123-65184142 None:intergenic 50.0%
!! GTGGTAGACTGGTTTAGGGT+AGG - chr1_1:65184133-65184152 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG - chr1_1:65184138-65184157 None:intergenic 50.0%
TTAGGGTAGGTGTGAACTGG+TGG - chr1_1:65184165-65184184 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+TGG - chr1_1:65184123-65184142 None:intergenic 50.0%
!! TACTTGTGAACTGGTGGTGG+TGG - chr1_1:65184204-65184223 None:intergenic 50.0%
!! TGAGGGTACTTGTGAACTGG+TGG - chr1_1:65184210-65184229 None:intergenic 50.0%
!! GGATGAGGGTACTTGTGAAC+TGG - chr1_1:65184213-65184232 None:intergenic 50.0%
! GTGGTGGAGAATGGTAGACT+GGG - chr1_1:65184239-65184258 None:intergenic 50.0%
!! TGAGGGTACTTGTGAACTGG+GGG - chr1_1:65184210-65184229 None:intergenic 50.0%
!! GGATGAGGGTACTTGTGAAC+TGG - chr1_1:65184213-65184232 None:intergenic 50.0%
!! ACTTCTTTGGTGGTGGTGGT+GGG - chr1_1:65184308-65184327 None:intergenic 50.0%
!! TAGGACTTCTTTGGTGGTGG+TGG - chr1_1:65184312-65184331 None:intergenic 50.0%
!! TGAGGGTACTTGTGGAATGG+GGG - chr1_1:65184354-65184373 None:intergenic 50.0%
!! GTGAGGGTACTTGTGGAATG+GGG - chr1_1:65184355-65184374 None:intergenic 50.0%
!! GGTGAGGGTACTTGTGGAAT+GGG - chr1_1:65184356-65184375 None:intergenic 50.0%
!! TTCTTGTGTGGTGTTGGTGG+TGG - chr1_1:65184402-65184421 None:intergenic 50.0%
GGAGGAGAGTGGTACTTGTA+TGG - chr1_1:65184426-65184445 None:intergenic 50.0%
TTAGGGTAGGTGTGAACTGG+GGG - chr1_1:65184165-65184184 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+TGG - chr1_1:65184123-65184142 None:intergenic 50.0%
!! GTGGTAGACTGGTTTAGGGT+AGG - chr1_1:65184133-65184152 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG - chr1_1:65184138-65184157 None:intergenic 50.0%
AGGGTAGGTGTGATGAACTG+GGG - chr1_1:65184496-65184515 None:intergenic 50.0%
!! GTGGTAGACTGGTTTAGGGT+AGG - chr1_1:65184133-65184152 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG - chr1_1:65184138-65184157 None:intergenic 50.0%
!! GGTAGACTGGTTTAGGGTGA+GGG - chr1_1:65184560-65184579 None:intergenic 50.0%
!! TGGTAGACTGGTTTAGGGTG+AGG - chr1_1:65184561-65184580 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG - chr1_1:65184138-65184157 None:intergenic 50.0%
!! TAAGTGTGAACTGGTGGTGG+TGG - chr1_1:65184588-65184607 None:intergenic 50.0%
GGCTTAGGGTAAGTGTGAAC+TGG - chr1_1:65184597-65184616 None:intergenic 50.0%
!! GGAGAGTGGTAGATTGGCTT+AGG - chr1_1:65184612-65184631 None:intergenic 50.0%
!! GAGAGTGGTAGACCGGTTTT+GGG - chr1_1:65184662-65184681 None:intergenic 50.0%
GGAGAATGGTAAACTGGGTG+GGG - chr1_1:65184720-65184739 None:intergenic 50.0%
GAGGAGAATGGTAAACTGGG+TGG - chr1_1:65184722-65184741 None:intergenic 50.0%
GGAGGAGGAGAATGGTAAAC+TGG - chr1_1:65184726-65184745 None:intergenic 50.0%
! GTAATAGTGTGGTGGAGGTG+GGG - chr1_1:65184760-65184779 None:intergenic 50.0%
TAGTTGTGGTAAGGTGGAGG+AGG - chr1_1:65184792-65184811 None:intergenic 50.0%
!! TGGTGGTGGTGGAGAGGAAT+AGG - chr1_1:65184076-65184095 None:intergenic 55.0%
!! GTAATGTGGTGGTGGTGGAG+AGG - chr1_1:65184082-65184101 None:intergenic 55.0%
TTAGGGTAGGTGTGAACCGG+TGG - chr1_1:65184120-65184139 None:intergenic 55.0%
!! TAGGTGTGAACTGGTGGTGG+TGG - chr1_1:65184159-65184178 None:intergenic 55.0%
!! GGTGGTGGAGAGTGGTAAAC+TGG - chr1_1:65184189-65184208 None:intergenic 55.0%
GGGTACTTGTGAACTGGTGG+TGG - chr1_1:65184207-65184226 None:intergenic 55.0%
GGTAGACTGGGTGTGGATGA+GGG - chr1_1:65184227-65184246 None:intergenic 55.0%
TGGTAGACTGGGTGTGGATG+AGG - chr1_1:65184228-65184247 None:intergenic 55.0%
GGAGAATGGTAGACTGGGTG+TGG - chr1_1:65184234-65184253 None:intergenic 55.0%
!! GGTGGTGGAGAATGGTAGAC+TGG - chr1_1:65184240-65184259 None:intergenic 55.0%
TACTTGTGAACTGGGGGTGG+TGG - chr1_1:65184255-65184274 None:intergenic 55.0%
GGTACACAGGGTGAGGATGA+GGG - chr1_1:65184278-65184297 None:intergenic 55.0%
TGGTACACAGGGTGAGGATG+AGG - chr1_1:65184279-65184298 None:intergenic 55.0%
!! TTCTTTGGTGGTGGTGGTGG+GGG - chr1_1:65184306-65184325 None:intergenic 55.0%
!! CTTCTTTGGTGGTGGTGGTG+GGG - chr1_1:65184307-65184326 None:intergenic 55.0%
!! GACTTCTTTGGTGGTGGTGG+TGG - chr1_1:65184309-65184328 None:intergenic 55.0%
TACTTGTGGAATGGGGGTGG+TGG - chr1_1:65184348-65184367 None:intergenic 55.0%
!! GGGTGAGGGTACTTGTGGAA+TGG - chr1_1:65184357-65184376 None:intergenic 55.0%
GGGAATGGTAGACAGGGTGA+GGG - chr1_1:65184377-65184396 None:intergenic 55.0%
! GTGGTGGGGAATGGTAGACA+GGG - chr1_1:65184383-65184402 None:intergenic 55.0%
!! TGTGTGGTGTTGGTGGTGGT+GGG - chr1_1:65184398-65184417 None:intergenic 55.0%
!! TTGTGTGGTGTTGGTGGTGG+TGG - chr1_1:65184399-65184418 None:intergenic 55.0%
! GGCTTCTTGTGTGGTGTTGG+TGG - chr1_1:65184405-65184424 None:intergenic 55.0%
TAGGTGTGATGAACTGGGGG+TGG - chr1_1:65184492-65184511 None:intergenic 55.0%
GGGTAGGTGTGATGAACTGG+GGG - chr1_1:65184495-65184514 None:intergenic 55.0%
TGAGGGTAGGTGTGAACTGG+GGG - chr1_1:65184543-65184562 None:intergenic 55.0%
GTGAGGGTAGGTGTGAACTG+GGG - chr1_1:65184544-65184563 None:intergenic 55.0%
GGTGAGGGTAGGTGTGAACT+GGG - chr1_1:65184545-65184564 None:intergenic 55.0%
!! GACTGGTTTAGGGTGAGGGT+AGG - chr1_1:65184556-65184575 None:intergenic 55.0%
GGGTAAGTGTGAACTGGTGG+TGG - chr1_1:65184591-65184610 None:intergenic 55.0%
GGTGGAGGAGAGTGGTAGAT+TGG - chr1_1:65184618-65184637 None:intergenic 55.0%
TGAGGGTAGGTGTGAACTGG+GGG - chr1_1:65184543-65184562 None:intergenic 55.0%
GTGAGGGTAGGTGTGAACTG+GGG - chr1_1:65184544-65184563 None:intergenic 55.0%
GGTGAGGGTAGGTGTGAACT+GGG - chr1_1:65184545-65184564 None:intergenic 55.0%
CACCTACCCTCACCCAAAAC+CGG + chr1_1:65184647-65184666 Msa0036580:CDS 55.0%
!!! GGTAGACCGGTTTTGGGTGA+GGG - chr1_1:65184656-65184675 None:intergenic 55.0%
!!! TGGTAGACCGGTTTTGGGTG+AGG - chr1_1:65184657-65184676 None:intergenic 55.0%
!! GGAGAGTGGTAGACCGGTTT+TGG - chr1_1:65184663-65184682 None:intergenic 55.0%
!! TAGGTGTGAACTGGTGGTGG+TGG - chr1_1:65184159-65184178 None:intergenic 55.0%
AAACTGGGTGGGGAACGTGT+GGG - chr1_1:65184710-65184729 None:intergenic 55.0%
TAAACTGGGTGGGGAACGTG+TGG - chr1_1:65184711-65184730 None:intergenic 55.0%
!! TGGTGGTGGTGGAGAGGAAT+AGG - chr1_1:65184076-65184095 None:intergenic 55.0%
!! GTAATGTGGTGGTGGTGGAG+AGG - chr1_1:65184082-65184101 None:intergenic 55.0%
TTAGGGTAGGTGTGAACCGG+TGG - chr1_1:65184120-65184139 None:intergenic 55.0%
!! TAGGTGTGAACTGGTGGTGG+TGG - chr1_1:65184159-65184178 None:intergenic 55.0%
!! GGTGGTGGAGAGTGGTAAAC+TGG - chr1_1:65184189-65184208 None:intergenic 55.0%
GGGTACTTGTGAACTGGTGG+TGG - chr1_1:65184207-65184226 None:intergenic 55.0%
GGTAGACTGGGTGTGGATGA+GGG - chr1_1:65184227-65184246 None:intergenic 55.0%
TGGTAGACTGGGTGTGGATG+AGG - chr1_1:65184228-65184247 None:intergenic 55.0%
GGAGAATGGTAGACTGGGTG+TGG - chr1_1:65184234-65184253 None:intergenic 55.0%
!! GGTGGTGGAGAATGGTAGAC+TGG - chr1_1:65184240-65184259 None:intergenic 55.0%
TACTTGTGAACTGGGGGTGG+TGG - chr1_1:65184255-65184274 None:intergenic 55.0%
GGTACACAGGGTGAGGATGA+GGG - chr1_1:65184278-65184297 None:intergenic 55.0%
TGGTACACAGGGTGAGGATG+AGG - chr1_1:65184279-65184298 None:intergenic 55.0%
!! TTCTTTGGTGGTGGTGGTGG+GGG - chr1_1:65184306-65184325 None:intergenic 55.0%
!! CTTCTTTGGTGGTGGTGGTG+GGG - chr1_1:65184307-65184326 None:intergenic 55.0%
!! GACTTCTTTGGTGGTGGTGG+TGG - chr1_1:65184309-65184328 None:intergenic 55.0%
TACTTGTGGAATGGGGGTGG+TGG - chr1_1:65184348-65184367 None:intergenic 55.0%
!! GGGTGAGGGTACTTGTGGAA+TGG - chr1_1:65184357-65184376 None:intergenic 55.0%
GGGAATGGTAGACAGGGTGA+GGG - chr1_1:65184377-65184396 None:intergenic 55.0%
! GTGGTGGGGAATGGTAGACA+GGG - chr1_1:65184383-65184402 None:intergenic 55.0%
!! TGTGTGGTGTTGGTGGTGGT+GGG - chr1_1:65184398-65184417 None:intergenic 55.0%
!! TTGTGTGGTGTTGGTGGTGG+TGG - chr1_1:65184399-65184418 None:intergenic 55.0%
! GGCTTCTTGTGTGGTGTTGG+TGG - chr1_1:65184405-65184424 None:intergenic 55.0%
TAGGTGTGATGAACTGGGGG+TGG - chr1_1:65184492-65184511 None:intergenic 55.0%
GGGTAGGTGTGATGAACTGG+GGG - chr1_1:65184495-65184514 None:intergenic 55.0%
TGAGGGTAGGTGTGAACTGG+GGG - chr1_1:65184543-65184562 None:intergenic 55.0%
GTGAGGGTAGGTGTGAACTG+GGG - chr1_1:65184544-65184563 None:intergenic 55.0%
GGTGAGGGTAGGTGTGAACT+GGG - chr1_1:65184545-65184564 None:intergenic 55.0%
!! GACTGGTTTAGGGTGAGGGT+AGG - chr1_1:65184556-65184575 None:intergenic 55.0%
GGGTAAGTGTGAACTGGTGG+TGG - chr1_1:65184591-65184610 None:intergenic 55.0%
GGTGGAGGAGAGTGGTAGAT+TGG - chr1_1:65184618-65184637 None:intergenic 55.0%
TGAGGGTAGGTGTGAACTGG+GGG - chr1_1:65184543-65184562 None:intergenic 55.0%
GTGAGGGTAGGTGTGAACTG+GGG - chr1_1:65184544-65184563 None:intergenic 55.0%
GGTGAGGGTAGGTGTGAACT+GGG - chr1_1:65184545-65184564 None:intergenic 55.0%
CACCTACCCTCACCCAAAAC+CGG + chr1_1:65184647-65184666 Msa0036580:CDS 55.0%
!!! GGTAGACCGGTTTTGGGTGA+GGG - chr1_1:65184656-65184675 None:intergenic 55.0%
!!! TGGTAGACCGGTTTTGGGTG+AGG - chr1_1:65184657-65184676 None:intergenic 55.0%
!! GGAGAGTGGTAGACCGGTTT+TGG - chr1_1:65184663-65184682 None:intergenic 55.0%
!! TAGGTGTGAACTGGTGGTGG+TGG - chr1_1:65184159-65184178 None:intergenic 55.0%
AAACTGGGTGGGGAACGTGT+GGG - chr1_1:65184710-65184729 None:intergenic 55.0%
TAAACTGGGTGGGGAACGTG+TGG - chr1_1:65184711-65184730 None:intergenic 55.0%
CTCATCTCCTCCACCTCCAC+CGG + chr1_1:65184101-65184120 Msa0036580:CDS 60.0%
TAGGTGTGAACCGGTGGAGG+TGG - chr1_1:65184114-65184133 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+TGG - chr1_1:65184144-65184163 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG - chr1_1:65184152-65184171 None:intergenic 60.0%
GGGTAGGTGTGAACTGGTGG+TGG - chr1_1:65184162-65184181 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG - chr1_1:65184152-65184171 None:intergenic 60.0%
!! GAACTGGGGGTGGTGGAGAA+TGG - chr1_1:65184248-65184267 None:intergenic 60.0%
GGGTACTTGTGAACTGGGGG+TGG - chr1_1:65184258-65184277 None:intergenic 60.0%
GGAGAGTGGTACACAGGGTG+AGG - chr1_1:65184285-65184304 None:intergenic 60.0%
GTGGGGGAGAGTGGTACACA+GGG - chr1_1:65184290-65184309 None:intergenic 60.0%
!! GGAATGGGGGTGGTGGAGAT+GGG - chr1_1:65184341-65184360 None:intergenic 60.0%
!! TGGAATGGGGGTGGTGGAGA+TGG - chr1_1:65184342-65184361 None:intergenic 60.0%
GGGTACTTGTGGAATGGGGG+TGG - chr1_1:65184351-65184370 None:intergenic 60.0%
!! GGTGAGGGTGAGGGTACTTG+TGG - chr1_1:65184362-65184381 None:intergenic 60.0%
GGTAGACAGGGTGAGGGTGA+GGG - chr1_1:65184371-65184390 None:intergenic 60.0%
TGGTAGACAGGGTGAGGGTG+AGG - chr1_1:65184372-65184391 None:intergenic 60.0%
GGGGAATGGTAGACAGGGTG+AGG - chr1_1:65184378-65184397 None:intergenic 60.0%
!! GGTGGTGGGGAATGGTAGAC+AGG - chr1_1:65184384-65184403 None:intergenic 60.0%
!! GTGTTGGTGGTGGTGGGGAA+TGG - chr1_1:65184392-65184411 None:intergenic 60.0%
!! GTGTGGTGTTGGTGGTGGTG+GGG - chr1_1:65184397-65184416 None:intergenic 60.0%
TAGGTGTGAACTGGGGGTGG+AGG - chr1_1:65184444-65184463 None:intergenic 60.0%
GGTGGAGGAGAGTGGTAGAC+TGG - chr1_1:65184474-65184493 None:intergenic 60.0%
GTGTGATGAACTGGGGGTGG+AGG - chr1_1:65184489-65184508 None:intergenic 60.0%
GGTGGAGGAGAGTGGTAGAC+TGG - chr1_1:65184474-65184493 None:intergenic 60.0%
TAGGTGTGAACTGGGGGTGG+AGG - chr1_1:65184444-65184463 None:intergenic 60.0%
GGGTGAGGGTAGGTGTGAAC+TGG - chr1_1:65184546-65184565 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+TGG - chr1_1:65184144-65184163 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG - chr1_1:65184152-65184171 None:intergenic 60.0%
TAGGTGTGAACTGGGGGTGG+AGG - chr1_1:65184444-65184463 None:intergenic 60.0%
GGGTGAGGGTAGGTGTGAAC+TGG - chr1_1:65184546-65184565 None:intergenic 60.0%
!!! GACCGGTTTTGGGTGAGGGT+AGG - chr1_1:65184652-65184671 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+CGG - chr1_1:65184144-65184163 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG - chr1_1:65184152-65184171 None:intergenic 60.0%
GGGTAGGTGTGAACTGGTGG+TGG - chr1_1:65184162-65184181 None:intergenic 60.0%
TGTGGGGGGTAGGTGTGAAC+TGG - chr1_1:65184693-65184712 None:intergenic 60.0%
AACTGGGTGGGGAACGTGTG+GGG - chr1_1:65184709-65184728 None:intergenic 60.0%
GGACTGGAGGAGGAGGAGAA+TGG - chr1_1:65184734-65184753 None:intergenic 60.0%
! AGTGTGGTGGAGGTGGGGAA+TGG - chr1_1:65184755-65184774 None:intergenic 60.0%
CTCATCTCCTCCACCTCCAC+CGG + chr1_1:65184101-65184120 Msa0036580:CDS 60.0%
TAGGTGTGAACCGGTGGAGG+TGG - chr1_1:65184114-65184133 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+TGG - chr1_1:65184144-65184163 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG - chr1_1:65184152-65184171 None:intergenic 60.0%
GGGTAGGTGTGAACTGGTGG+TGG - chr1_1:65184162-65184181 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG - chr1_1:65184152-65184171 None:intergenic 60.0%
!! GAACTGGGGGTGGTGGAGAA+TGG - chr1_1:65184248-65184267 None:intergenic 60.0%
GGGTACTTGTGAACTGGGGG+TGG - chr1_1:65184258-65184277 None:intergenic 60.0%
GGAGAGTGGTACACAGGGTG+AGG - chr1_1:65184285-65184304 None:intergenic 60.0%
GTGGGGGAGAGTGGTACACA+GGG - chr1_1:65184290-65184309 None:intergenic 60.0%
!! GGAATGGGGGTGGTGGAGAT+GGG - chr1_1:65184341-65184360 None:intergenic 60.0%
!! TGGAATGGGGGTGGTGGAGA+TGG - chr1_1:65184342-65184361 None:intergenic 60.0%
GGGTACTTGTGGAATGGGGG+TGG - chr1_1:65184351-65184370 None:intergenic 60.0%
!! GGTGAGGGTGAGGGTACTTG+TGG - chr1_1:65184362-65184381 None:intergenic 60.0%
GGTAGACAGGGTGAGGGTGA+GGG - chr1_1:65184371-65184390 None:intergenic 60.0%
TGGTAGACAGGGTGAGGGTG+AGG - chr1_1:65184372-65184391 None:intergenic 60.0%
GGGGAATGGTAGACAGGGTG+AGG - chr1_1:65184378-65184397 None:intergenic 60.0%
!! GGTGGTGGGGAATGGTAGAC+AGG - chr1_1:65184384-65184403 None:intergenic 60.0%
!! GTGTTGGTGGTGGTGGGGAA+TGG - chr1_1:65184392-65184411 None:intergenic 60.0%
!! GTGTGGTGTTGGTGGTGGTG+GGG - chr1_1:65184397-65184416 None:intergenic 60.0%
TAGGTGTGAACTGGGGGTGG+AGG - chr1_1:65184444-65184463 None:intergenic 60.0%
GGTGGAGGAGAGTGGTAGAC+TGG - chr1_1:65184474-65184493 None:intergenic 60.0%
GTGTGATGAACTGGGGGTGG+AGG - chr1_1:65184489-65184508 None:intergenic 60.0%
GGTGGAGGAGAGTGGTAGAC+TGG - chr1_1:65184474-65184493 None:intergenic 60.0%
TAGGTGTGAACTGGGGGTGG+AGG - chr1_1:65184444-65184463 None:intergenic 60.0%
GGGTGAGGGTAGGTGTGAAC+TGG - chr1_1:65184546-65184565 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+TGG - chr1_1:65184144-65184163 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG - chr1_1:65184152-65184171 None:intergenic 60.0%
TAGGTGTGAACTGGGGGTGG+AGG - chr1_1:65184444-65184463 None:intergenic 60.0%
GGGTGAGGGTAGGTGTGAAC+TGG - chr1_1:65184546-65184565 None:intergenic 60.0%
!!! GACCGGTTTTGGGTGAGGGT+AGG - chr1_1:65184652-65184671 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+CGG - chr1_1:65184144-65184163 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG - chr1_1:65184152-65184171 None:intergenic 60.0%
GGGTAGGTGTGAACTGGTGG+TGG - chr1_1:65184162-65184181 None:intergenic 60.0%
TGTGGGGGGTAGGTGTGAAC+TGG - chr1_1:65184693-65184712 None:intergenic 60.0%
AACTGGGTGGGGAACGTGTG+GGG - chr1_1:65184709-65184728 None:intergenic 60.0%
GGACTGGAGGAGGAGGAGAA+TGG - chr1_1:65184734-65184753 None:intergenic 60.0%
! AGTGTGGTGGAGGTGGGGAA+TGG - chr1_1:65184755-65184774 None:intergenic 60.0%
GTGTGAACCGGTGGAGGTGG+AGG - chr1_1:65184111-65184130 None:intergenic 65.0%
GGGTAGGTGTGAACCGGTGG+AGG - chr1_1:65184117-65184136 None:intergenic 65.0%
GGTGGGGGAGAGTGGTACAC+AGG - chr1_1:65184291-65184310 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG - chr1_1:65184437-65184456 None:intergenic 65.0%
GGGTAGGTGTGAACTGGGGG+TGG - chr1_1:65184447-65184466 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG - chr1_1:65184437-65184456 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG - chr1_1:65184437-65184456 None:intergenic 65.0%
GGGTAGGTGTGAACTGGGGG+TGG - chr1_1:65184447-65184466 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG - chr1_1:65184437-65184456 None:intergenic 65.0%
GGGTAGGTGTGAACTGGGGG+TGG - chr1_1:65184447-65184466 None:intergenic 65.0%
GGGGGGTAGGTGTGAACTGG+TGG - chr1_1:65184690-65184709 None:intergenic 65.0%
ACTGGGTGGGGAACGTGTGG+GGG - chr1_1:65184708-65184727 None:intergenic 65.0%
!! GGGGAATGGACTGGAGGAGG+AGG - chr1_1:65184741-65184760 None:intergenic 65.0%
!! GGTGGGGAATGGACTGGAGG+AGG - chr1_1:65184744-65184763 None:intergenic 65.0%
!! GGAGGTGGGGAATGGACTGG+AGG - chr1_1:65184747-65184766 None:intergenic 65.0%
GGTGGAGGTGGGGAATGGAC+TGG - chr1_1:65184750-65184769 None:intergenic 65.0%
GGGGCAGTGCCTTACAGCTG+TGG - chr1_1:65185191-65185210 None:intergenic 65.0%
GTGTGAACCGGTGGAGGTGG+AGG - chr1_1:65184111-65184130 None:intergenic 65.0%
GGGTAGGTGTGAACCGGTGG+AGG - chr1_1:65184117-65184136 None:intergenic 65.0%
GGTGGGGGAGAGTGGTACAC+AGG - chr1_1:65184291-65184310 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG - chr1_1:65184437-65184456 None:intergenic 65.0%
GGGTAGGTGTGAACTGGGGG+TGG - chr1_1:65184447-65184466 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG - chr1_1:65184437-65184456 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG - chr1_1:65184437-65184456 None:intergenic 65.0%
GGGTAGGTGTGAACTGGGGG+TGG - chr1_1:65184447-65184466 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG - chr1_1:65184437-65184456 None:intergenic 65.0%
GGGTAGGTGTGAACTGGGGG+TGG - chr1_1:65184447-65184466 None:intergenic 65.0%
GGGGGGTAGGTGTGAACTGG+TGG - chr1_1:65184690-65184709 None:intergenic 65.0%
ACTGGGTGGGGAACGTGTGG+GGG - chr1_1:65184708-65184727 None:intergenic 65.0%
!! GGGGAATGGACTGGAGGAGG+AGG - chr1_1:65184741-65184760 None:intergenic 65.0%
!! GGTGGGGAATGGACTGGAGG+AGG - chr1_1:65184744-65184763 None:intergenic 65.0%
!! GGAGGTGGGGAATGGACTGG+AGG - chr1_1:65184747-65184766 None:intergenic 65.0%
GGTGGAGGTGGGGAATGGAC+TGG - chr1_1:65184750-65184769 None:intergenic 65.0%
GGGGCAGTGCCTTACAGCTG+TGG - chr1_1:65185191-65185210 None:intergenic 65.0%
!! GTGGTGGTGGTGGGGGAGAG+TGG - chr1_1:65184299-65184318 None:intergenic 70.0%
GTGGGGAACGTGTGGGGGGT+AGG - chr1_1:65184703-65184722 None:intergenic 70.0%
CTGGGTGGGGAACGTGTGGG+GGG - chr1_1:65184707-65184726 None:intergenic 70.0%
!! GTGGTGGTGGTGGGGGAGAG+TGG - chr1_1:65184299-65184318 None:intergenic 70.0%
GTGGGGAACGTGTGGGGGGT+AGG - chr1_1:65184703-65184722 None:intergenic 70.0%
CTGGGTGGGGAACGTGTGGG+GGG - chr1_1:65184707-65184726 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 65184003 65185370 65184003 ID=Msa0036580;Name=Msa0036580
chr1_1 mRNA 65184003 65185370 65184003 ID=Msa0036580-mRNA-1;Parent=Msa0036580;Name=Msa0036580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0.33|1|0|0|3|238|275
chr1_1 exon 65184003 65184212 65184003 ID=Msa0036580-mRNA-1:exon:20961;Parent=Msa0036580-mRNA-1
chr1_1 exon 65184222 65184749 65184222 ID=Msa0036580-mRNA-1:exon:20962;Parent=Msa0036580-mRNA-1
chr1_1 exon 65185043 65185370 65185043 ID=Msa0036580-mRNA-1:exon:20963;Parent=Msa0036580-mRNA-1
chr1_1 CDS 65184003 65184212 65184003 ID=Msa0036580-mRNA-1:cds;Parent=Msa0036580-mRNA-1
chr1_1 CDS 65184222 65184749 65184222 ID=Msa0036580-mRNA-1:cds;Parent=Msa0036580-mRNA-1
chr1_1 CDS 65185043 65185132 65185043 ID=Msa0036580-mRNA-1:cds;Parent=Msa0036580-mRNA-1
chr1_1 three_prime_UTR 65185133 65185370 65185133 ID=Msa0036580-mRNA-1:three_prime_utr;Parent=Msa0036580-mRNA-1
Gene Sequence

>Msa0036580

ATGGCTCTCACTCTTGCATTAGCCATCCTCTTTTTGAGTTTCCCATCTGAAATTTCAGCAAACAAATACTCCTATTCCTCTCCACCACCACCACATTACTCATCTCCTCCACCTCCACCGGTTCACACCTACCCTAAACCAGTCTACCACTCTCCACCACCACCAGTTCACACCTACCCTAAACCAGTTTACCACTCTCCACCACCACCATACCCTCATCCACACCCAGTCTACCATTCTCCACCACCCCCAGTTCACAAGTACCCTCATCCTCACCCTGTGTACCACTCTCCCCCACCACCACCACCAAAGAAGTCCTACAAATACCCATCTCCACCACCCCCATTCCACAAGTACCCTCACCCTCACCCTGTCTACCATTCCCCACCACCACCAACACCACACAAGAAGCCATACAAGTACCACTCTCCTCCACCCCCAGTTCACACCTACCCTAAACCAGTCTACCACTCTCCTCCACCCCCAGTTCATCACACCTACCCTAAACCAGTCTACCACTCTCCTCCACCCCCAGTTCACACCTACCCTCACCCTAAACCAGTCTACCACTCTCCACCACCACCAGTTCACACTTACCCTAAGCCAATCTACCACTCTCCTCCACCCCCAGTTCACACCTACCCTCACCCAAAACCGGTCTACCACTCTCCACCACCACCAGTTCACACCTACCCCCCACACGTTCCCCACCCAGTTTACCATTCTCCTCCTCCTCCAGATCTAAACAGAAAGTGTGAAAGCAAAGAAAGCCATGCACAAAGAAGATCAAGGGGATTCTTCACATATATTTCGTCAGCATTTGATTAA
Protein sequence

>Msa0036580

MALTLALAILFLSFPSEISANKYSYSSPPPPHYSSPPPPPVHTYPKPVYHSPPPPVHTYPKPVYHSPPPPYPHPHPVYHSPPPPVHKYPHPHPVYHSPPPPPPKKSYKYPSPPPPFHKYPHPHPVYHSPPPPTPHKKPYKYHSPPPPVHTYPKPVYHSPPPPVHHTYPKPVYHSPPPPVHTYPHPKPVYHSPPPPVHTYPKPIYHSPPPPVHTYPHPKPVYHSPPPPVHTYPPHVPHPVYHSPPPPDLNRKCESKESHAQRRSRGFFTYISSAFD*