AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139270 MtrunA17_Chr1g0199111 66.942 242 16 5 1 224 34 229 2.76e-52 172
Msa0139270 MtrunA17_Chr1g0199111 65.909 132 7 6 165 263 74 200 3.97e-22 93.6
Msa0139270 MtrunA17_Chr1g0199111 79.452 73 11 3 29 97 174 246 2.20e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 150 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTTCTTTGGTGGTGGTGG+TGG 0.218370 1_3:+72903800 None:intergenic
GGAGAGTGGTAGACCGGTTT+TGG 0.227125 1_3:+72903446 None:intergenic
AAGGGACAGATTACTATAAT+AGG 0.238256 1_3:+72902811 None:intergenic
TTAGGGTAGGTGTGATGAAC+TGG 0.250652 1_3:+72903611 None:intergenic
GGAGAGTGGTAAACTGGTTT+AGG 0.264396 1_3:+72903977 None:intergenic
GGAGAGTGGTAGACTGGTTT+AGG 0.269476 1_3:+72904022 None:intergenic
GGAGAGTGGTAGACTGGTTT+AGG 0.276912 1_3:+72903593 None:intergenic
GGAGAGTGGTAGACTGGTTT+AGG 0.276912 1_3:+72903641 None:intergenic
AACTGCAGACACATGCATAT+TGG 0.294515 1_3:+72902908 None:intergenic
TTGTGTGGTGTTGGTGGTGG+TGG 0.296778 1_3:+72903710 None:intergenic
CTTCTTTGGTGGTGGTGGTG+GGG 0.304850 1_3:+72903802 None:intergenic
ACTGCAGACACATGCATATT+GGG 0.310062 1_3:+72902909 None:intergenic
GTGAGGGTACTTGTGGAATG+GGG 0.310159 1_3:+72903754 None:intergenic
GGGTGAGGGTAAGTGTGAAC+TGG 0.312030 1_3:+72903467 None:intergenic
GGAGGAGGAGAATGGTAAAC+TGG 0.315939 1_3:+72903383 None:intergenic
GGGTAGGTGTGAACTGGTGG+TGG 0.323054 1_3:+72903422 None:intergenic
GGTTTAGGGTAGGTGTGAAC+TGG 0.323634 1_3:+72903656 None:intergenic
GGTGGTGGGGAATGGTAGAC+AGG 0.327301 1_3:+72903725 None:intergenic
GGGTATTTGTAGGACTTCTT+TGG 0.339824 1_3:+72903788 None:intergenic
AACTGGGTGGGGAACGTGTG+GGG 0.342140 1_3:+72903400 None:intergenic
GGGGAATGGACTGGAGGAGG+AGG 0.342363 1_3:+72903368 None:intergenic
GGTGGTGGAGAGTGGTAAAC+TGG 0.347165 1_3:+72903971 None:intergenic
GGATGAGGGTAGGTGTGAAC+TGG 0.348749 1_3:+72903563 None:intergenic
TGTGTGGTGTTGGTGGTGGT+GGG 0.350492 1_3:+72903711 None:intergenic
GGTGAGGGTACTTGTGGAAT+GGG 0.364132 1_3:+72903753 None:intergenic
TAGGTGTGAACTGGTGGTGG+TGG 0.365546 1_3:+72903425 None:intergenic
GGTGGTGGAGAATGGTAGAC+TGG 0.368383 1_3:+72903869 None:intergenic
GGTGGTGGAGAATGGTAGAC+TGG 0.368383 1_3:+72903920 None:intergenic
GTGTTGGTGGTGGTGGGGAA+TGG 0.368418 1_3:+72903717 None:intergenic
ACTTCTTTGGTGGTGGTGGT+GGG 0.372019 1_3:+72903801 None:intergenic
GGATGAGGGTACTTGTGAAC+TGG 0.376371 1_3:+72903896 None:intergenic
GGAGAGTGGTAGACTGGTTT+AGG 0.377540 1_3:+72903542 None:intergenic
TGGTGGTGGTGGAGAGGAAT+AGG 0.383114 1_3:+72904084 None:intergenic
AGGGACAGATTACTATAATA+GGG 0.383229 1_3:+72902812 None:intergenic
TGAGGGTACTTGTGGAATGG+GGG 0.384288 1_3:+72903755 None:intergenic
TAGGGTAGGTGTGATGAACT+GGG 0.385655 1_3:+72903612 None:intergenic
CCCTTGATCTTCTTTGTGCA+TGG 0.385831 1_3:+72903042 None:intergenic
GGGGAATGGTAGACAGGGTG+AGG 0.393051 1_3:+72903731 None:intergenic
TTAGGGTAGGTGTGAACTGG+GGG 0.394496 1_3:+72903659 None:intergenic
TGGTAGACAGGGTGAGGGTG+AGG 0.399555 1_3:+72903737 None:intergenic
GGTGGAGGAGAGTGGTAGAT+TGG 0.401120 1_3:+72903491 None:intergenic
GGTGGAGGAGAGTGGTAGAC+TGG 0.406838 1_3:+72903587 None:intergenic
GGTGGAGGAGAGTGGTAGAC+TGG 0.406838 1_3:+72903635 None:intergenic
GGTGGTGGAGAGTGGTAGAC+TGG 0.406884 1_3:+72903536 None:intergenic
GGTGGTGGAGAGTGGTAGAC+TGG 0.406884 1_3:+72904016 None:intergenic
GGAGAGTGGTAGATTGGCTT+AGG 0.407710 1_3:+72903497 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.407775 1_3:+72903594 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.407775 1_3:+72903642 None:intergenic
TAGGACTTCTTTGGTGGTGG+TGG 0.413096 1_3:+72903797 None:intergenic
TGAGGGTAAGTGTGAACTGG+GGG 0.414542 1_3:+72903470 None:intergenic
ACTGGGTGGGGAACGTGTGG+GGG 0.414643 1_3:+72903401 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.418204 1_3:+72904023 None:intergenic
TGAGGGTAGGTGTGAACTGG+GGG 0.420934 1_3:+72903566 None:intergenic
GAGAGTGGTAAACTGGTTTA+GGG 0.421341 1_3:+72903978 None:intergenic
TTCTTGTGTGGTGTTGGTGG+TGG 0.422729 1_3:+72903707 None:intergenic
GGTGGGGAATGGACTGGAGG+AGG 0.423530 1_3:+72903365 None:intergenic
TAAACTGGGTGGGGAACGTG+TGG 0.424331 1_3:+72903398 None:intergenic
TAGGTGTGAACTGGTGGTGG+TGG 0.425430 1_3:+72904001 None:intergenic
TATGGCTTCTTGTGTGGTGT+TGG 0.430459 1_3:+72903701 None:intergenic
GGGTAGGTGTGAACTGGTGG+TGG 0.432339 1_3:+72903998 None:intergenic
TAGGTGTGAACCGGTGGAGG+TGG 0.432885 1_3:+72904046 None:intergenic
TGGTAGACTGGGTGTGGATG+AGG 0.432940 1_3:+72903881 None:intergenic
TGGTAGACTGGGTGTGGATG+AGG 0.432940 1_3:+72903932 None:intergenic
GGCTTCTTGTGTGGTGTTGG+TGG 0.438133 1_3:+72903704 None:intergenic
GTTTAGGGTAGGTGTGAACT+GGG 0.438204 1_3:+72903657 None:intergenic
ATTTGATTAAGATTGTTTAG+AGG 0.441210 1_3:-72902994 Msa0139270:exon
GGATGAGGGTACTTGTGAAC+TGG 0.454340 1_3:+72903845 None:intergenic
GATGAGGGTAGGTGTGAACT+GGG 0.456654 1_3:+72903564 None:intergenic
GGGTGAGGGTACTTGTGGAA+TGG 0.457239 1_3:+72903752 None:intergenic
TTTCATTATCCACAGCTGTA+AGG 0.463114 1_3:-72902938 Msa0139270:three_prime_UTR
TGGTGGAGATGGGTATTTGT+AGG 0.464447 1_3:+72903778 None:intergenic
GGTGAGGGTAAGTGTGAACT+GGG 0.467342 1_3:+72903468 None:intergenic
TGGTAGACTGGTTTAGGATG+AGG 0.469944 1_3:+72903548 None:intergenic
TGGTACACAGGGTGAGGATG+AGG 0.470660 1_3:+72903830 None:intergenic
GGAGGAGAGTGGTACTTGTA+TGG 0.473439 1_3:+72903683 None:intergenic
TAAGTGTGAACTGGTGGTGG+TGG 0.475303 1_3:+72903521 None:intergenic
TACTTGTGAACTGGTGGTGG+TGG 0.478889 1_3:+72903956 None:intergenic
GTGTGAACCGGTGGAGGTGG+AGG 0.479749 1_3:+72904049 None:intergenic
GGGTAAGTGTGAACTGGTGG+TGG 0.483553 1_3:+72903518 None:intergenic
TTTGATTAAGATTGTTTAGA+GGG 0.483555 1_3:-72902993 Msa0139270:exon
CACTTACCCTCACCCAAAAC+CGG 0.486139 1_3:-72903459 Msa0139270:CDS
GAGGAGAATGGTAAACTGGG+TGG 0.487610 1_3:+72903387 None:intergenic
TTGTAGGACTTCTTTGGTGG+TGG 0.488177 1_3:+72903794 None:intergenic
TATTTGTAGGACTTCTTTGG+TGG 0.488416 1_3:+72903791 None:intergenic
CTGGGTGGGGAACGTGTGGG+GGG 0.492090 1_3:+72903402 None:intergenic
GTGTGGTGTTGGTGGTGGTG+GGG 0.493914 1_3:+72903712 None:intergenic
TTGTTTGCTGAAATTTCAGA+TGG 0.495058 1_3:+72904112 None:intergenic
AGGGTAGGTGTGATGAACTG+GGG 0.495351 1_3:+72903613 None:intergenic
TTAGGGTAGGTGTGAACTGG+TGG 0.497727 1_3:+72903995 None:intergenic
GGAGAATGGTAGACTGGGTG+TGG 0.503359 1_3:+72903875 None:intergenic
GGAGAATGGTAGACTGGGTG+TGG 0.503359 1_3:+72903926 None:intergenic
GATGAGTAATGTGGTGGTGG+TGG 0.503703 1_3:+72904073 None:intergenic
GATGAGGGTACTTGTGAACT+GGG 0.510365 1_3:+72903897 None:intergenic
GGGTAGGTGTGAACCGGTGG+AGG 0.512967 1_3:+72904043 None:intergenic
GGCTTAGGGTAAGTGTGAAC+TGG 0.512993 1_3:+72903512 None:intergenic
AGGAGAATGGTAAACTGGGT+GGG 0.515299 1_3:+72903388 None:intergenic
GGTTTAGGGTAGGTGTGAAC+TGG 0.518023 1_3:+72903992 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.521227 1_3:+72903432 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.521227 1_3:+72903528 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.521227 1_3:+72904008 None:intergenic
GGAGATGAGTAATGTGGTGG+TGG 0.526418 1_3:+72904070 None:intergenic
CTCATCTCCTCCACCTCCAC+CGG 0.527332 1_3:-72904056 Msa0139270:CDS
GGGTACTTGTGAACTGGTGG+TGG 0.529976 1_3:+72903953 None:intergenic
GGTAGACTGGTTTAGGATGA+GGG 0.530629 1_3:+72903549 None:intergenic
GGTTTAGGGTAGGTGTGAAC+CGG 0.531173 1_3:+72904037 None:intergenic
AAACTGGGTGGGGAACGTGT+GGG 0.531189 1_3:+72903399 None:intergenic
GGAGAGTGGTACACAGGGTG+AGG 0.537722 1_3:+72903824 None:intergenic
GTGGTAGACTGGTTTAGGGT+AGG 0.540463 1_3:+72903598 None:intergenic
GTGGTAGACTGGTTTAGGGT+AGG 0.540463 1_3:+72903646 None:intergenic
GTGGTAGACTGGTTTAGGGT+AGG 0.540463 1_3:+72904027 None:intergenic
GAGAGTGGTAGATTGGCTTA+GGG 0.544319 1_3:+72903498 None:intergenic
TTAGGGTAGGTGTGAACCGG+TGG 0.552413 1_3:+72904040 None:intergenic
GGTGGTGGAGAGTGGTAGAC+CGG 0.554181 1_3:+72903440 None:intergenic
ATGAGGGTAGGTGTGAACTG+GGG 0.555278 1_3:+72903565 None:intergenic
GGAGAATGGTAAACTGGGTG+GGG 0.556186 1_3:+72903389 None:intergenic
TACTTGTATGGCTTCTTGTG+TGG 0.556733 1_3:+72903695 None:intergenic
GCCATGCACAAAGAAGATCA+AGG 0.557315 1_3:-72903043 Msa0139270:CDS
GTGGTGGAGAATGGTAGACT+GGG 0.561528 1_3:+72903870 None:intergenic
GTGGTGGAGAATGGTAGACT+GGG 0.561528 1_3:+72903921 None:intergenic
GTGAGGGTAAGTGTGAACTG+GGG 0.567494 1_3:+72903469 None:intergenic
GATGAGGGTACTTGTGAACT+GGG 0.567518 1_3:+72903846 None:intergenic
GGACTGGAGGAGGAGGAGAA+TGG 0.567677 1_3:+72903375 None:intergenic
GAGGAGGAGAATGGTAAACT+GGG 0.569161 1_3:+72903384 None:intergenic
CCATGCACAAAGAAGATCAA+GGG 0.570172 1_3:-72903042 Msa0139270:CDS
GTGGTAAACTGGTTTAGGGT+AGG 0.570919 1_3:+72903982 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.575724 1_3:+72903963 None:intergenic
GGTAGACAGGGTGAGGGTGA+GGG 0.577845 1_3:+72903738 None:intergenic
TTTAGGGTAGGTGTGAACTG+GGG 0.578197 1_3:+72903658 None:intergenic
GGTGAGGGTGAGGGTACTTG+TGG 0.578511 1_3:+72903747 None:intergenic
ATGAGGGTACTTGTGAACTG+GGG 0.583070 1_3:+72903898 None:intergenic
TTAGGGTAAGTGTGAACTGG+TGG 0.591700 1_3:+72903515 None:intergenic
GGGAATGGTAGACAGGGTGA+GGG 0.591903 1_3:+72903732 None:intergenic
GGGTAGGTGTGATGAACTGG+GGG 0.603246 1_3:+72903614 None:intergenic
GGGGCAGTGCCTTACAGCTG+TGG 0.604123 1_3:+72902929 None:intergenic
GGTAGACTGGGTGTGGATGA+GGG 0.606300 1_3:+72903882 None:intergenic
GGTAGACTGGGTGTGGATGA+GGG 0.606300 1_3:+72903933 None:intergenic
GGGACAGATTACTATAATAG+GGG 0.609580 1_3:+72902813 None:intergenic
GACTGGTTTAGGATGAGGGT+AGG 0.609693 1_3:+72903553 None:intergenic
ATGAGGGTACTTGTGAACTG+GGG 0.632619 1_3:+72903847 None:intergenic
GGTGGAGGAGATGAGTAATG+TGG 0.638580 1_3:+72904064 None:intergenic
CTGCAGACACATGCATATTG+GGG 0.638949 1_3:+72902910 None:intergenic
TGTTTGCTGAAATTTCAGAT+GGG 0.639287 1_3:+72904113 None:intergenic
GTGGTGGGGAATGGTAGACA+GGG 0.647557 1_3:+72903726 None:intergenic
TGAGGGTACTTGTGAACTGG+GGG 0.647886 1_3:+72903899 None:intergenic
CATGCACAAAGAAGATCAAG+GGG 0.648903 1_3:-72903041 Msa0139270:CDS
GGTACACAGGGTGAGGATGA+GGG 0.650631 1_3:+72903831 None:intergenic
GGAGGAGATGAGTAATGTGG+TGG 0.655082 1_3:+72904067 None:intergenic
GTAATGTGGTGGTGGTGGAG+AGG 0.667025 1_3:+72904078 None:intergenic
GGACAGATTACTATAATAGG+GGG 0.668421 1_3:+72902814 None:intergenic
TGAGGGTACTTGTGAACTGG+GGG 0.698582 1_3:+72903848 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAATATTTGTCTCATATT+TGG - chr1_3:72903813-72903832 Msa0139270:CDS 20.0%
!! ATTTGATTAAGATTGTTTAG+AGG - chr1_3:72903981-72904000 Msa0139270:CDS 20.0%
!! TTTGATTAAGATTGTTTAGA+GGG - chr1_3:72903982-72904001 Msa0139270:CDS 20.0%
!! GTTAATATTTGTCTCATATT+TGG - chr1_3:72903813-72903832 Msa0139270:CDS 20.0%
!! ATTTGATTAAGATTGTTTAG+AGG - chr1_3:72903981-72904000 Msa0139270:CDS 20.0%
!! TTTGATTAAGATTGTTTAGA+GGG - chr1_3:72903982-72904001 Msa0139270:CDS 20.0%
! TGTCTCATATTTGGTTATTA+AGG - chr1_3:72903822-72903841 Msa0139270:CDS 25.0%
! GTCTCATATTTGGTTATTAA+GGG - chr1_3:72903823-72903842 Msa0139270:CDS 25.0%
! ACACAAATGCAAATATACAT+TGG + chr1_3:72903879-72903898 None:intergenic 25.0%
! ATGTATATTTGCATTTGTGT+AGG - chr1_3:72903879-72903898 Msa0139270:CDS 25.0%
!! GCATTGTAATTTTCAAAGTT+CGG - chr1_3:72904098-72904117 Msa0139270:CDS 25.0%
! TGTCTCATATTTGGTTATTA+AGG - chr1_3:72903822-72903841 Msa0139270:CDS 25.0%
! GTCTCATATTTGGTTATTAA+GGG - chr1_3:72903823-72903842 Msa0139270:CDS 25.0%
! ACACAAATGCAAATATACAT+TGG + chr1_3:72903879-72903898 None:intergenic 25.0%
! ATGTATATTTGCATTTGTGT+AGG - chr1_3:72903879-72903898 Msa0139270:CDS 25.0%
!! GCATTGTAATTTTCAAAGTT+CGG - chr1_3:72904098-72904117 Msa0139270:CDS 25.0%
! TGTTTGCTGAAATTTCAGAT+GGG + chr1_3:72902865-72902884 None:intergenic 30.0%
! TTGTTTGCTGAAATTTCAGA+TGG + chr1_3:72902866-72902885 None:intergenic 30.0%
TTGCATGAAAAGTTACCATA+TGG + chr1_3:72903707-72903726 None:intergenic 30.0%
! TGTTTGCTGAAATTTCAGAT+GGG + chr1_3:72902865-72902884 None:intergenic 30.0%
! TTGTTTGCTGAAATTTCAGA+TGG + chr1_3:72902866-72902885 None:intergenic 30.0%
TTGCATGAAAAGTTACCATA+TGG + chr1_3:72903707-72903726 None:intergenic 30.0%
TATTTGTAGGACTTCTTTGG+TGG + chr1_3:72903187-72903206 None:intergenic 35.0%
GATTTGTAGTAATAGTGTGG+TGG + chr1_3:72903637-72903656 None:intergenic 35.0%
! GGTGATTTGTAGTAATAGTG+TGG + chr1_3:72903640-72903659 None:intergenic 35.0%
! AATTATGGGCTATCTAGTTG+TGG + chr1_3:72903675-72903694 None:intergenic 35.0%
ACAACTAGATAGCCCATAAT+TGG - chr1_3:72903674-72903693 Msa0139270:CDS 35.0%
TATGGTGTGATGCCAATTAT+GGG + chr1_3:72903689-72903708 None:intergenic 35.0%
ATATGGTGTGATGCCAATTA+TGG + chr1_3:72903690-72903709 None:intergenic 35.0%
ATAATTGGCATCACACCATA+TGG - chr1_3:72903689-72903708 Msa0139270:CDS 35.0%
TGTTTCAATGCACAAGAGAT+GGG + chr1_3:72903764-72903783 None:intergenic 35.0%
ATGTTTCAATGCACAAGAGA+TGG + chr1_3:72903765-72903784 None:intergenic 35.0%
! GCATTGAAACATTCTTTTGC+TGG - chr1_3:72903773-72903792 Msa0139270:CDS 35.0%
TTTCATTATCCACAGCTGTA+AGG - chr1_3:72904037-72904056 Msa0139270:CDS 35.0%
TATTTGTAGGACTTCTTTGG+TGG + chr1_3:72903187-72903206 None:intergenic 35.0%
GATTTGTAGTAATAGTGTGG+TGG + chr1_3:72903637-72903656 None:intergenic 35.0%
! GGTGATTTGTAGTAATAGTG+TGG + chr1_3:72903640-72903659 None:intergenic 35.0%
! AATTATGGGCTATCTAGTTG+TGG + chr1_3:72903675-72903694 None:intergenic 35.0%
ACAACTAGATAGCCCATAAT+TGG - chr1_3:72903674-72903693 Msa0139270:CDS 35.0%
TATGGTGTGATGCCAATTAT+GGG + chr1_3:72903689-72903708 None:intergenic 35.0%
ATATGGTGTGATGCCAATTA+TGG + chr1_3:72903690-72903709 None:intergenic 35.0%
ATAATTGGCATCACACCATA+TGG - chr1_3:72903689-72903708 Msa0139270:CDS 35.0%
TGTTTCAATGCACAAGAGAT+GGG + chr1_3:72903764-72903783 None:intergenic 35.0%
ATGTTTCAATGCACAAGAGA+TGG + chr1_3:72903765-72903784 None:intergenic 35.0%
! GCATTGAAACATTCTTTTGC+TGG - chr1_3:72903773-72903792 Msa0139270:CDS 35.0%
TTTCATTATCCACAGCTGTA+AGG - chr1_3:72904037-72904056 Msa0139270:CDS 35.0%
TGGGAAACTCAAAAAGAGGA+TGG + chr1_3:72902846-72902865 None:intergenic 40.0%
CAGATGGGAAACTCAAAAAG+AGG + chr1_3:72902850-72902869 None:intergenic 40.0%
! GAGAGTGGTAAACTGGTTTA+GGG + chr1_3:72903000-72903019 None:intergenic 40.0%
GGGTATTTGTAGGACTTCTT+TGG + chr1_3:72903190-72903209 None:intergenic 40.0%
TACTTGTATGGCTTCTTGTG+TGG + chr1_3:72903283-72903302 None:intergenic 40.0%
TTGTAGTAATAGTGTGGTGG+AGG + chr1_3:72903634-72903653 None:intergenic 40.0%
CCATGCACAAAGAAGATCAA+GGG - chr1_3:72903933-72903952 Msa0139270:CDS 40.0%
CATGCACAAAGAAGATCAAG+GGG - chr1_3:72903934-72903953 Msa0139270:CDS 40.0%
ACTGCAGACACATGCATATT+GGG + chr1_3:72904069-72904088 None:intergenic 40.0%
AACTGCAGACACATGCATAT+TGG + chr1_3:72904070-72904089 None:intergenic 40.0%
TGGGAAACTCAAAAAGAGGA+TGG + chr1_3:72902846-72902865 None:intergenic 40.0%
CAGATGGGAAACTCAAAAAG+AGG + chr1_3:72902850-72902869 None:intergenic 40.0%
! GAGAGTGGTAAACTGGTTTA+GGG + chr1_3:72903000-72903019 None:intergenic 40.0%
GGGTATTTGTAGGACTTCTT+TGG + chr1_3:72903190-72903209 None:intergenic 40.0%
TACTTGTATGGCTTCTTGTG+TGG + chr1_3:72903283-72903302 None:intergenic 40.0%
TTGTAGTAATAGTGTGGTGG+AGG + chr1_3:72903634-72903653 None:intergenic 40.0%
CCATGCACAAAGAAGATCAA+GGG - chr1_3:72903933-72903952 Msa0139270:CDS 40.0%
CATGCACAAAGAAGATCAAG+GGG - chr1_3:72903934-72903953 Msa0139270:CDS 40.0%
ACTGCAGACACATGCATATT+GGG + chr1_3:72904069-72904088 None:intergenic 40.0%
AACTGCAGACACATGCATAT+TGG + chr1_3:72904070-72904089 None:intergenic 40.0%
!! GAGAGTGGTAGACTGGTTTA+GGG + chr1_3:72902955-72902974 None:intergenic 45.0%
! GTGGTAAACTGGTTTAGGGT+AGG + chr1_3:72902996-72903015 None:intergenic 45.0%
! GGAGAGTGGTAAACTGGTTT+AGG + chr1_3:72903001-72903020 None:intergenic 45.0%
!! ATGAGGGTACTTGTGAACTG+GGG + chr1_3:72903029-72903048 None:intergenic 45.0%
!! GATGAGGGTACTTGTGAACT+GGG + chr1_3:72903030-72903049 None:intergenic 45.0%
!! ATGAGGGTACTTGTGAACTG+GGG + chr1_3:72903029-72903048 None:intergenic 45.0%
!! GATGAGGGTACTTGTGAACT+GGG + chr1_3:72903030-72903049 None:intergenic 45.0%
TTGTAGGACTTCTTTGGTGG+TGG + chr1_3:72903184-72903203 None:intergenic 45.0%
TGGTGGAGATGGGTATTTGT+AGG + chr1_3:72903200-72903219 None:intergenic 45.0%
TATGGCTTCTTGTGTGGTGT+TGG + chr1_3:72903277-72903296 None:intergenic 45.0%
! TTTAGGGTAGGTGTGAACTG+GGG + chr1_3:72902984-72903003 None:intergenic 45.0%
! GTTTAGGGTAGGTGTGAACT+GGG + chr1_3:72902985-72903004 None:intergenic 45.0%
!! GAGAGTGGTAGACTGGTTTA+GGG + chr1_3:72902955-72902974 None:intergenic 45.0%
TAGGGTAGGTGTGATGAACT+GGG + chr1_3:72903366-72903385 None:intergenic 45.0%
TTAGGGTAGGTGTGATGAAC+TGG + chr1_3:72903367-72903386 None:intergenic 45.0%
!! GAGAGTGGTAGACTGGTTTA+GGG + chr1_3:72902955-72902974 None:intergenic 45.0%
!! GGTAGACTGGTTTAGGATGA+GGG + chr1_3:72903429-72903448 None:intergenic 45.0%
!! TGGTAGACTGGTTTAGGATG+AGG + chr1_3:72903430-72903449 None:intergenic 45.0%
TTAGGGTAAGTGTGAACTGG+TGG + chr1_3:72903463-72903482 None:intergenic 45.0%
!! GAGAGTGGTAGATTGGCTTA+GGG + chr1_3:72903480-72903499 None:intergenic 45.0%
AGGAGAATGGTAAACTGGGT+GGG + chr1_3:72903590-72903609 None:intergenic 45.0%
GAGGAGGAGAATGGTAAACT+GGG + chr1_3:72903594-72903613 None:intergenic 45.0%
! AGTAATAGTGTGGTGGAGGT+GGG + chr1_3:72903630-72903649 None:intergenic 45.0%
! TAGTAATAGTGTGGTGGAGG+TGG + chr1_3:72903631-72903650 None:intergenic 45.0%
ATCTAGTTGTGGTAAGGTGG+AGG + chr1_3:72903664-72903683 None:intergenic 45.0%
GCTATCTAGTTGTGGTAAGG+TGG + chr1_3:72903667-72903686 None:intergenic 45.0%
TGGGCTATCTAGTTGTGGTA+AGG + chr1_3:72903670-72903689 None:intergenic 45.0%
GCCATGCACAAAGAAGATCA+AGG - chr1_3:72903932-72903951 Msa0139270:CDS 45.0%
CCCTTGATCTTCTTTGTGCA+TGG + chr1_3:72903936-72903955 None:intergenic 45.0%
CTGCAGACACATGCATATTG+GGG + chr1_3:72904068-72904087 None:intergenic 45.0%
!! GAGAGTGGTAGACTGGTTTA+GGG + chr1_3:72902955-72902974 None:intergenic 45.0%
! GTGGTAAACTGGTTTAGGGT+AGG + chr1_3:72902996-72903015 None:intergenic 45.0%
! GGAGAGTGGTAAACTGGTTT+AGG + chr1_3:72903001-72903020 None:intergenic 45.0%
!! ATGAGGGTACTTGTGAACTG+GGG + chr1_3:72903029-72903048 None:intergenic 45.0%
!! GATGAGGGTACTTGTGAACT+GGG + chr1_3:72903030-72903049 None:intergenic 45.0%
!! ATGAGGGTACTTGTGAACTG+GGG + chr1_3:72903029-72903048 None:intergenic 45.0%
!! GATGAGGGTACTTGTGAACT+GGG + chr1_3:72903030-72903049 None:intergenic 45.0%
TTGTAGGACTTCTTTGGTGG+TGG + chr1_3:72903184-72903203 None:intergenic 45.0%
TGGTGGAGATGGGTATTTGT+AGG + chr1_3:72903200-72903219 None:intergenic 45.0%
TATGGCTTCTTGTGTGGTGT+TGG + chr1_3:72903277-72903296 None:intergenic 45.0%
! TTTAGGGTAGGTGTGAACTG+GGG + chr1_3:72902984-72903003 None:intergenic 45.0%
! GTTTAGGGTAGGTGTGAACT+GGG + chr1_3:72902985-72903004 None:intergenic 45.0%
!! GAGAGTGGTAGACTGGTTTA+GGG + chr1_3:72902955-72902974 None:intergenic 45.0%
TAGGGTAGGTGTGATGAACT+GGG + chr1_3:72903366-72903385 None:intergenic 45.0%
TTAGGGTAGGTGTGATGAAC+TGG + chr1_3:72903367-72903386 None:intergenic 45.0%
!! GAGAGTGGTAGACTGGTTTA+GGG + chr1_3:72902955-72902974 None:intergenic 45.0%
!! GGTAGACTGGTTTAGGATGA+GGG + chr1_3:72903429-72903448 None:intergenic 45.0%
!! TGGTAGACTGGTTTAGGATG+AGG + chr1_3:72903430-72903449 None:intergenic 45.0%
TTAGGGTAAGTGTGAACTGG+TGG + chr1_3:72903463-72903482 None:intergenic 45.0%
!! GAGAGTGGTAGATTGGCTTA+GGG + chr1_3:72903480-72903499 None:intergenic 45.0%
AGGAGAATGGTAAACTGGGT+GGG + chr1_3:72903590-72903609 None:intergenic 45.0%
GAGGAGGAGAATGGTAAACT+GGG + chr1_3:72903594-72903613 None:intergenic 45.0%
! AGTAATAGTGTGGTGGAGGT+GGG + chr1_3:72903630-72903649 None:intergenic 45.0%
! TAGTAATAGTGTGGTGGAGG+TGG + chr1_3:72903631-72903650 None:intergenic 45.0%
ATCTAGTTGTGGTAAGGTGG+AGG + chr1_3:72903664-72903683 None:intergenic 45.0%
GCTATCTAGTTGTGGTAAGG+TGG + chr1_3:72903667-72903686 None:intergenic 45.0%
TGGGCTATCTAGTTGTGGTA+AGG + chr1_3:72903670-72903689 None:intergenic 45.0%
GCCATGCACAAAGAAGATCA+AGG - chr1_3:72903932-72903951 Msa0139270:CDS 45.0%
CCCTTGATCTTCTTTGTGCA+TGG + chr1_3:72903936-72903955 None:intergenic 45.0%
CTGCAGACACATGCATATTG+GGG + chr1_3:72904068-72904087 None:intergenic 45.0%
!! GATGAGTAATGTGGTGGTGG+TGG + chr1_3:72902905-72902924 None:intergenic 50.0%
GGAGATGAGTAATGTGGTGG+TGG + chr1_3:72902908-72902927 None:intergenic 50.0%
GGAGGAGATGAGTAATGTGG+TGG + chr1_3:72902911-72902930 None:intergenic 50.0%
GGTGGAGGAGATGAGTAATG+TGG + chr1_3:72902914-72902933 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+CGG + chr1_3:72902941-72902960 None:intergenic 50.0%
!! GTGGTAGACTGGTTTAGGGT+AGG + chr1_3:72902951-72902970 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG + chr1_3:72902956-72902975 None:intergenic 50.0%
TTAGGGTAGGTGTGAACTGG+TGG + chr1_3:72902983-72903002 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+TGG + chr1_3:72902941-72902960 None:intergenic 50.0%
!! TACTTGTGAACTGGTGGTGG+TGG + chr1_3:72903022-72903041 None:intergenic 50.0%
!! TGAGGGTACTTGTGAACTGG+TGG + chr1_3:72903028-72903047 None:intergenic 50.0%
!! GGATGAGGGTACTTGTGAAC+TGG + chr1_3:72903031-72903050 None:intergenic 50.0%
! GTGGTGGAGAATGGTAGACT+GGG + chr1_3:72903057-72903076 None:intergenic 50.0%
!! TGAGGGTACTTGTGAACTGG+GGG + chr1_3:72903028-72903047 None:intergenic 50.0%
!! GGATGAGGGTACTTGTGAAC+TGG + chr1_3:72903031-72903050 None:intergenic 50.0%
! GTGGTGGAGAATGGTAGACT+GGG + chr1_3:72903057-72903076 None:intergenic 50.0%
!! TGAGGGTACTTGTGAACTGG+GGG + chr1_3:72903028-72903047 None:intergenic 50.0%
!! GGATGAGGGTACTTGTGAAC+TGG + chr1_3:72903031-72903050 None:intergenic 50.0%
!! ACTTCTTTGGTGGTGGTGGT+GGG + chr1_3:72903177-72903196 None:intergenic 50.0%
!! TAGGACTTCTTTGGTGGTGG+TGG + chr1_3:72903181-72903200 None:intergenic 50.0%
!! TGAGGGTACTTGTGGAATGG+GGG + chr1_3:72903223-72903242 None:intergenic 50.0%
!! GTGAGGGTACTTGTGGAATG+GGG + chr1_3:72903224-72903243 None:intergenic 50.0%
!! GGTGAGGGTACTTGTGGAAT+GGG + chr1_3:72903225-72903244 None:intergenic 50.0%
!! TTCTTGTGTGGTGTTGGTGG+TGG + chr1_3:72903271-72903290 None:intergenic 50.0%
GGAGGAGAGTGGTACTTGTA+TGG + chr1_3:72903295-72903314 None:intergenic 50.0%
TTAGGGTAGGTGTGAACTGG+GGG + chr1_3:72902983-72903002 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+TGG + chr1_3:72902941-72902960 None:intergenic 50.0%
!! GTGGTAGACTGGTTTAGGGT+AGG + chr1_3:72902951-72902970 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG + chr1_3:72902956-72902975 None:intergenic 50.0%
AGGGTAGGTGTGATGAACTG+GGG + chr1_3:72903365-72903384 None:intergenic 50.0%
!! GTGGTAGACTGGTTTAGGGT+AGG + chr1_3:72902951-72902970 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG + chr1_3:72902956-72902975 None:intergenic 50.0%
ATGAGGGTAGGTGTGAACTG+GGG + chr1_3:72903413-72903432 None:intergenic 50.0%
GATGAGGGTAGGTGTGAACT+GGG + chr1_3:72903414-72903433 None:intergenic 50.0%
!! GACTGGTTTAGGATGAGGGT+AGG + chr1_3:72903425-72903444 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG + chr1_3:72902956-72902975 None:intergenic 50.0%
!! TAAGTGTGAACTGGTGGTGG+TGG + chr1_3:72903457-72903476 None:intergenic 50.0%
GGCTTAGGGTAAGTGTGAAC+TGG + chr1_3:72903466-72903485 None:intergenic 50.0%
!! GGAGAGTGGTAGATTGGCTT+AGG + chr1_3:72903481-72903500 None:intergenic 50.0%
TGAGGGTAAGTGTGAACTGG+GGG + chr1_3:72903508-72903527 None:intergenic 50.0%
GTGAGGGTAAGTGTGAACTG+GGG + chr1_3:72903509-72903528 None:intergenic 50.0%
GGTGAGGGTAAGTGTGAACT+GGG + chr1_3:72903510-72903529 None:intergenic 50.0%
CACTTACCCTCACCCAAAAC+CGG - chr1_3:72903516-72903535 Msa0139270:CDS 50.0%
!! GAGAGTGGTAGACCGGTTTT+GGG + chr1_3:72903531-72903550 None:intergenic 50.0%
GGAGAATGGTAAACTGGGTG+GGG + chr1_3:72903589-72903608 None:intergenic 50.0%
GAGGAGAATGGTAAACTGGG+TGG + chr1_3:72903591-72903610 None:intergenic 50.0%
GGAGGAGGAGAATGGTAAAC+TGG + chr1_3:72903595-72903614 None:intergenic 50.0%
! GTAATAGTGTGGTGGAGGTG+GGG + chr1_3:72903629-72903648 None:intergenic 50.0%
TAGTTGTGGTAAGGTGGAGG+AGG + chr1_3:72903661-72903680 None:intergenic 50.0%
!! GATGAGTAATGTGGTGGTGG+TGG + chr1_3:72902905-72902924 None:intergenic 50.0%
GGAGATGAGTAATGTGGTGG+TGG + chr1_3:72902908-72902927 None:intergenic 50.0%
GGAGGAGATGAGTAATGTGG+TGG + chr1_3:72902911-72902930 None:intergenic 50.0%
GGTGGAGGAGATGAGTAATG+TGG + chr1_3:72902914-72902933 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+CGG + chr1_3:72902941-72902960 None:intergenic 50.0%
!! GTGGTAGACTGGTTTAGGGT+AGG + chr1_3:72902951-72902970 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG + chr1_3:72902956-72902975 None:intergenic 50.0%
TTAGGGTAGGTGTGAACTGG+TGG + chr1_3:72902983-72903002 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+TGG + chr1_3:72902941-72902960 None:intergenic 50.0%
!! TACTTGTGAACTGGTGGTGG+TGG + chr1_3:72903022-72903041 None:intergenic 50.0%
!! TGAGGGTACTTGTGAACTGG+TGG + chr1_3:72903028-72903047 None:intergenic 50.0%
!! GGATGAGGGTACTTGTGAAC+TGG + chr1_3:72903031-72903050 None:intergenic 50.0%
! GTGGTGGAGAATGGTAGACT+GGG + chr1_3:72903057-72903076 None:intergenic 50.0%
!! TGAGGGTACTTGTGAACTGG+GGG + chr1_3:72903028-72903047 None:intergenic 50.0%
!! GGATGAGGGTACTTGTGAAC+TGG + chr1_3:72903031-72903050 None:intergenic 50.0%
! GTGGTGGAGAATGGTAGACT+GGG + chr1_3:72903057-72903076 None:intergenic 50.0%
!! TGAGGGTACTTGTGAACTGG+GGG + chr1_3:72903028-72903047 None:intergenic 50.0%
!! GGATGAGGGTACTTGTGAAC+TGG + chr1_3:72903031-72903050 None:intergenic 50.0%
!! ACTTCTTTGGTGGTGGTGGT+GGG + chr1_3:72903177-72903196 None:intergenic 50.0%
!! TAGGACTTCTTTGGTGGTGG+TGG + chr1_3:72903181-72903200 None:intergenic 50.0%
!! TGAGGGTACTTGTGGAATGG+GGG + chr1_3:72903223-72903242 None:intergenic 50.0%
!! GTGAGGGTACTTGTGGAATG+GGG + chr1_3:72903224-72903243 None:intergenic 50.0%
!! GGTGAGGGTACTTGTGGAAT+GGG + chr1_3:72903225-72903244 None:intergenic 50.0%
!! TTCTTGTGTGGTGTTGGTGG+TGG + chr1_3:72903271-72903290 None:intergenic 50.0%
GGAGGAGAGTGGTACTTGTA+TGG + chr1_3:72903295-72903314 None:intergenic 50.0%
TTAGGGTAGGTGTGAACTGG+GGG + chr1_3:72902983-72903002 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+TGG + chr1_3:72902941-72902960 None:intergenic 50.0%
!! GTGGTAGACTGGTTTAGGGT+AGG + chr1_3:72902951-72902970 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG + chr1_3:72902956-72902975 None:intergenic 50.0%
AGGGTAGGTGTGATGAACTG+GGG + chr1_3:72903365-72903384 None:intergenic 50.0%
!! GTGGTAGACTGGTTTAGGGT+AGG + chr1_3:72902951-72902970 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG + chr1_3:72902956-72902975 None:intergenic 50.0%
ATGAGGGTAGGTGTGAACTG+GGG + chr1_3:72903413-72903432 None:intergenic 50.0%
GATGAGGGTAGGTGTGAACT+GGG + chr1_3:72903414-72903433 None:intergenic 50.0%
!! GACTGGTTTAGGATGAGGGT+AGG + chr1_3:72903425-72903444 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG + chr1_3:72902956-72902975 None:intergenic 50.0%
!! TAAGTGTGAACTGGTGGTGG+TGG + chr1_3:72903457-72903476 None:intergenic 50.0%
GGCTTAGGGTAAGTGTGAAC+TGG + chr1_3:72903466-72903485 None:intergenic 50.0%
!! GGAGAGTGGTAGATTGGCTT+AGG + chr1_3:72903481-72903500 None:intergenic 50.0%
TGAGGGTAAGTGTGAACTGG+GGG + chr1_3:72903508-72903527 None:intergenic 50.0%
GTGAGGGTAAGTGTGAACTG+GGG + chr1_3:72903509-72903528 None:intergenic 50.0%
GGTGAGGGTAAGTGTGAACT+GGG + chr1_3:72903510-72903529 None:intergenic 50.0%
CACTTACCCTCACCCAAAAC+CGG - chr1_3:72903516-72903535 Msa0139270:CDS 50.0%
!! GAGAGTGGTAGACCGGTTTT+GGG + chr1_3:72903531-72903550 None:intergenic 50.0%
GGAGAATGGTAAACTGGGTG+GGG + chr1_3:72903589-72903608 None:intergenic 50.0%
GAGGAGAATGGTAAACTGGG+TGG + chr1_3:72903591-72903610 None:intergenic 50.0%
GGAGGAGGAGAATGGTAAAC+TGG + chr1_3:72903595-72903614 None:intergenic 50.0%
! GTAATAGTGTGGTGGAGGTG+GGG + chr1_3:72903629-72903648 None:intergenic 50.0%
TAGTTGTGGTAAGGTGGAGG+AGG + chr1_3:72903661-72903680 None:intergenic 50.0%
!! TGGTGGTGGTGGAGAGGAAT+AGG + chr1_3:72902894-72902913 None:intergenic 55.0%
!! GTAATGTGGTGGTGGTGGAG+AGG + chr1_3:72902900-72902919 None:intergenic 55.0%
TTAGGGTAGGTGTGAACCGG+TGG + chr1_3:72902938-72902957 None:intergenic 55.0%
!! TAGGTGTGAACTGGTGGTGG+TGG + chr1_3:72902977-72902996 None:intergenic 55.0%
!! GGTGGTGGAGAGTGGTAAAC+TGG + chr1_3:72903007-72903026 None:intergenic 55.0%
GGGTACTTGTGAACTGGTGG+TGG + chr1_3:72903025-72903044 None:intergenic 55.0%
GGTAGACTGGGTGTGGATGA+GGG + chr1_3:72903045-72903064 None:intergenic 55.0%
TGGTAGACTGGGTGTGGATG+AGG + chr1_3:72903046-72903065 None:intergenic 55.0%
GGAGAATGGTAGACTGGGTG+TGG + chr1_3:72903052-72903071 None:intergenic 55.0%
!! GGTGGTGGAGAATGGTAGAC+TGG + chr1_3:72903058-72903077 None:intergenic 55.0%
TACTTGTGAACTGGGGGTGG+TGG + chr1_3:72903073-72903092 None:intergenic 55.0%
GGTAGACTGGGTGTGGATGA+GGG + chr1_3:72903045-72903064 None:intergenic 55.0%
TGGTAGACTGGGTGTGGATG+AGG + chr1_3:72903046-72903065 None:intergenic 55.0%
GGAGAATGGTAGACTGGGTG+TGG + chr1_3:72903052-72903071 None:intergenic 55.0%
!! GGTGGTGGAGAATGGTAGAC+TGG + chr1_3:72903058-72903077 None:intergenic 55.0%
TACTTGTGAACTGGGGGTGG+TGG + chr1_3:72903073-72903092 None:intergenic 55.0%
GGTACACAGGGTGAGGATGA+GGG + chr1_3:72903147-72903166 None:intergenic 55.0%
TGGTACACAGGGTGAGGATG+AGG + chr1_3:72903148-72903167 None:intergenic 55.0%
!! TTCTTTGGTGGTGGTGGTGG+GGG + chr1_3:72903175-72903194 None:intergenic 55.0%
!! CTTCTTTGGTGGTGGTGGTG+GGG + chr1_3:72903176-72903195 None:intergenic 55.0%
!! GACTTCTTTGGTGGTGGTGG+TGG + chr1_3:72903178-72903197 None:intergenic 55.0%
TACTTGTGGAATGGGGGTGG+TGG + chr1_3:72903217-72903236 None:intergenic 55.0%
!! GGGTGAGGGTACTTGTGGAA+TGG + chr1_3:72903226-72903245 None:intergenic 55.0%
GGGAATGGTAGACAGGGTGA+GGG + chr1_3:72903246-72903265 None:intergenic 55.0%
! GTGGTGGGGAATGGTAGACA+GGG + chr1_3:72903252-72903271 None:intergenic 55.0%
!! TGTGTGGTGTTGGTGGTGGT+GGG + chr1_3:72903267-72903286 None:intergenic 55.0%
!! TTGTGTGGTGTTGGTGGTGG+TGG + chr1_3:72903268-72903287 None:intergenic 55.0%
! GGCTTCTTGTGTGGTGTTGG+TGG + chr1_3:72903274-72903293 None:intergenic 55.0%
TAGGTGTGATGAACTGGGGG+TGG + chr1_3:72903361-72903380 None:intergenic 55.0%
GGGTAGGTGTGATGAACTGG+GGG + chr1_3:72903364-72903383 None:intergenic 55.0%
TGAGGGTAGGTGTGAACTGG+GGG + chr1_3:72903412-72903431 None:intergenic 55.0%
GGATGAGGGTAGGTGTGAAC+TGG + chr1_3:72903415-72903434 None:intergenic 55.0%
GGGTAAGTGTGAACTGGTGG+TGG + chr1_3:72903460-72903479 None:intergenic 55.0%
GGTGGAGGAGAGTGGTAGAT+TGG + chr1_3:72903487-72903506 None:intergenic 55.0%
TAAGTGTGAACTGGGGGTGG+AGG + chr1_3:72903502-72903521 None:intergenic 55.0%
GGGTGAGGGTAAGTGTGAAC+TGG + chr1_3:72903511-72903530 None:intergenic 55.0%
!!! GGTAGACCGGTTTTGGGTGA+GGG + chr1_3:72903525-72903544 None:intergenic 55.0%
!!! TGGTAGACCGGTTTTGGGTG+AGG + chr1_3:72903526-72903545 None:intergenic 55.0%
!! GGAGAGTGGTAGACCGGTTT+TGG + chr1_3:72903532-72903551 None:intergenic 55.0%
!! TAGGTGTGAACTGGTGGTGG+TGG + chr1_3:72902977-72902996 None:intergenic 55.0%
AAACTGGGTGGGGAACGTGT+GGG + chr1_3:72903579-72903598 None:intergenic 55.0%
TAAACTGGGTGGGGAACGTG+TGG + chr1_3:72903580-72903599 None:intergenic 55.0%
!! TGGTGGTGGTGGAGAGGAAT+AGG + chr1_3:72902894-72902913 None:intergenic 55.0%
!! GTAATGTGGTGGTGGTGGAG+AGG + chr1_3:72902900-72902919 None:intergenic 55.0%
TTAGGGTAGGTGTGAACCGG+TGG + chr1_3:72902938-72902957 None:intergenic 55.0%
!! TAGGTGTGAACTGGTGGTGG+TGG + chr1_3:72902977-72902996 None:intergenic 55.0%
!! GGTGGTGGAGAGTGGTAAAC+TGG + chr1_3:72903007-72903026 None:intergenic 55.0%
GGGTACTTGTGAACTGGTGG+TGG + chr1_3:72903025-72903044 None:intergenic 55.0%
GGTAGACTGGGTGTGGATGA+GGG + chr1_3:72903045-72903064 None:intergenic 55.0%
TGGTAGACTGGGTGTGGATG+AGG + chr1_3:72903046-72903065 None:intergenic 55.0%
GGAGAATGGTAGACTGGGTG+TGG + chr1_3:72903052-72903071 None:intergenic 55.0%
!! GGTGGTGGAGAATGGTAGAC+TGG + chr1_3:72903058-72903077 None:intergenic 55.0%
TACTTGTGAACTGGGGGTGG+TGG + chr1_3:72903073-72903092 None:intergenic 55.0%
GGTAGACTGGGTGTGGATGA+GGG + chr1_3:72903045-72903064 None:intergenic 55.0%
TGGTAGACTGGGTGTGGATG+AGG + chr1_3:72903046-72903065 None:intergenic 55.0%
GGAGAATGGTAGACTGGGTG+TGG + chr1_3:72903052-72903071 None:intergenic 55.0%
!! GGTGGTGGAGAATGGTAGAC+TGG + chr1_3:72903058-72903077 None:intergenic 55.0%
TACTTGTGAACTGGGGGTGG+TGG + chr1_3:72903073-72903092 None:intergenic 55.0%
GGTACACAGGGTGAGGATGA+GGG + chr1_3:72903147-72903166 None:intergenic 55.0%
TGGTACACAGGGTGAGGATG+AGG + chr1_3:72903148-72903167 None:intergenic 55.0%
!! TTCTTTGGTGGTGGTGGTGG+GGG + chr1_3:72903175-72903194 None:intergenic 55.0%
!! CTTCTTTGGTGGTGGTGGTG+GGG + chr1_3:72903176-72903195 None:intergenic 55.0%
!! GACTTCTTTGGTGGTGGTGG+TGG + chr1_3:72903178-72903197 None:intergenic 55.0%
TACTTGTGGAATGGGGGTGG+TGG + chr1_3:72903217-72903236 None:intergenic 55.0%
!! GGGTGAGGGTACTTGTGGAA+TGG + chr1_3:72903226-72903245 None:intergenic 55.0%
GGGAATGGTAGACAGGGTGA+GGG + chr1_3:72903246-72903265 None:intergenic 55.0%
! GTGGTGGGGAATGGTAGACA+GGG + chr1_3:72903252-72903271 None:intergenic 55.0%
!! TGTGTGGTGTTGGTGGTGGT+GGG + chr1_3:72903267-72903286 None:intergenic 55.0%
!! TTGTGTGGTGTTGGTGGTGG+TGG + chr1_3:72903268-72903287 None:intergenic 55.0%
! GGCTTCTTGTGTGGTGTTGG+TGG + chr1_3:72903274-72903293 None:intergenic 55.0%
TAGGTGTGATGAACTGGGGG+TGG + chr1_3:72903361-72903380 None:intergenic 55.0%
GGGTAGGTGTGATGAACTGG+GGG + chr1_3:72903364-72903383 None:intergenic 55.0%
TGAGGGTAGGTGTGAACTGG+GGG + chr1_3:72903412-72903431 None:intergenic 55.0%
GGATGAGGGTAGGTGTGAAC+TGG + chr1_3:72903415-72903434 None:intergenic 55.0%
GGGTAAGTGTGAACTGGTGG+TGG + chr1_3:72903460-72903479 None:intergenic 55.0%
GGTGGAGGAGAGTGGTAGAT+TGG + chr1_3:72903487-72903506 None:intergenic 55.0%
TAAGTGTGAACTGGGGGTGG+AGG + chr1_3:72903502-72903521 None:intergenic 55.0%
GGGTGAGGGTAAGTGTGAAC+TGG + chr1_3:72903511-72903530 None:intergenic 55.0%
!!! GGTAGACCGGTTTTGGGTGA+GGG + chr1_3:72903525-72903544 None:intergenic 55.0%
!!! TGGTAGACCGGTTTTGGGTG+AGG + chr1_3:72903526-72903545 None:intergenic 55.0%
!! GGAGAGTGGTAGACCGGTTT+TGG + chr1_3:72903532-72903551 None:intergenic 55.0%
!! TAGGTGTGAACTGGTGGTGG+TGG + chr1_3:72902977-72902996 None:intergenic 55.0%
AAACTGGGTGGGGAACGTGT+GGG + chr1_3:72903579-72903598 None:intergenic 55.0%
TAAACTGGGTGGGGAACGTG+TGG + chr1_3:72903580-72903599 None:intergenic 55.0%
CTCATCTCCTCCACCTCCAC+CGG - chr1_3:72902919-72902938 Msa0139270:three_prime_UTR 60.0%
TAGGTGTGAACCGGTGGAGG+TGG + chr1_3:72902932-72902951 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+TGG + chr1_3:72902962-72902981 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG + chr1_3:72902970-72902989 None:intergenic 60.0%
GGGTAGGTGTGAACTGGTGG+TGG + chr1_3:72902980-72902999 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG + chr1_3:72902970-72902989 None:intergenic 60.0%
!! GAACTGGGGGTGGTGGAGAA+TGG + chr1_3:72903066-72903085 None:intergenic 60.0%
GGGTACTTGTGAACTGGGGG+TGG + chr1_3:72903076-72903095 None:intergenic 60.0%
!! GAACTGGGGGTGGTGGAGAA+TGG + chr1_3:72903066-72903085 None:intergenic 60.0%
GGGTACTTGTGAACTGGGGG+TGG + chr1_3:72903076-72903095 None:intergenic 60.0%
GGAGAGTGGTACACAGGGTG+AGG + chr1_3:72903154-72903173 None:intergenic 60.0%
GTGGGGGAGAGTGGTACACA+GGG + chr1_3:72903159-72903178 None:intergenic 60.0%
!! GGAATGGGGGTGGTGGAGAT+GGG + chr1_3:72903210-72903229 None:intergenic 60.0%
!! TGGAATGGGGGTGGTGGAGA+TGG + chr1_3:72903211-72903230 None:intergenic 60.0%
GGGTACTTGTGGAATGGGGG+TGG + chr1_3:72903220-72903239 None:intergenic 60.0%
!! GGTGAGGGTGAGGGTACTTG+TGG + chr1_3:72903231-72903250 None:intergenic 60.0%
GGTAGACAGGGTGAGGGTGA+GGG + chr1_3:72903240-72903259 None:intergenic 60.0%
TGGTAGACAGGGTGAGGGTG+AGG + chr1_3:72903241-72903260 None:intergenic 60.0%
GGGGAATGGTAGACAGGGTG+AGG + chr1_3:72903247-72903266 None:intergenic 60.0%
!! GGTGGTGGGGAATGGTAGAC+AGG + chr1_3:72903253-72903272 None:intergenic 60.0%
!! GTGTTGGTGGTGGTGGGGAA+TGG + chr1_3:72903261-72903280 None:intergenic 60.0%
!! GTGTGGTGTTGGTGGTGGTG+GGG + chr1_3:72903266-72903285 None:intergenic 60.0%
TAGGTGTGAACTGGGGGTGG+AGG + chr1_3:72903313-72903332 None:intergenic 60.0%
GGTGGAGGAGAGTGGTAGAC+TGG + chr1_3:72903343-72903362 None:intergenic 60.0%
GTGTGATGAACTGGGGGTGG+AGG + chr1_3:72903358-72903377 None:intergenic 60.0%
GGTGGAGGAGAGTGGTAGAC+TGG + chr1_3:72903343-72903362 None:intergenic 60.0%
TAGGTGTGAACTGGGGGTGG+AGG + chr1_3:72903313-72903332 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+TGG + chr1_3:72902962-72902981 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG + chr1_3:72902970-72902989 None:intergenic 60.0%
GGGTAAGTGTGAACTGGGGG+TGG + chr1_3:72903505-72903524 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+CGG + chr1_3:72902962-72902981 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG + chr1_3:72902970-72902989 None:intergenic 60.0%
GGGTAGGTGTGAACTGGTGG+TGG + chr1_3:72902980-72902999 None:intergenic 60.0%
TGTGGGGGGTAGGTGTGAAC+TGG + chr1_3:72903562-72903581 None:intergenic 60.0%
AACTGGGTGGGGAACGTGTG+GGG + chr1_3:72903578-72903597 None:intergenic 60.0%
GGACTGGAGGAGGAGGAGAA+TGG + chr1_3:72903603-72903622 None:intergenic 60.0%
! AGTGTGGTGGAGGTGGGGAA+TGG + chr1_3:72903624-72903643 None:intergenic 60.0%
CTCATCTCCTCCACCTCCAC+CGG - chr1_3:72902919-72902938 Msa0139270:three_prime_UTR 60.0%
TAGGTGTGAACCGGTGGAGG+TGG + chr1_3:72902932-72902951 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+TGG + chr1_3:72902962-72902981 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG + chr1_3:72902970-72902989 None:intergenic 60.0%
GGGTAGGTGTGAACTGGTGG+TGG + chr1_3:72902980-72902999 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG + chr1_3:72902970-72902989 None:intergenic 60.0%
!! GAACTGGGGGTGGTGGAGAA+TGG + chr1_3:72903066-72903085 None:intergenic 60.0%
GGGTACTTGTGAACTGGGGG+TGG + chr1_3:72903076-72903095 None:intergenic 60.0%
!! GAACTGGGGGTGGTGGAGAA+TGG + chr1_3:72903066-72903085 None:intergenic 60.0%
GGGTACTTGTGAACTGGGGG+TGG + chr1_3:72903076-72903095 None:intergenic 60.0%
GGAGAGTGGTACACAGGGTG+AGG + chr1_3:72903154-72903173 None:intergenic 60.0%
GTGGGGGAGAGTGGTACACA+GGG + chr1_3:72903159-72903178 None:intergenic 60.0%
!! GGAATGGGGGTGGTGGAGAT+GGG + chr1_3:72903210-72903229 None:intergenic 60.0%
!! TGGAATGGGGGTGGTGGAGA+TGG + chr1_3:72903211-72903230 None:intergenic 60.0%
GGGTACTTGTGGAATGGGGG+TGG + chr1_3:72903220-72903239 None:intergenic 60.0%
!! GGTGAGGGTGAGGGTACTTG+TGG + chr1_3:72903231-72903250 None:intergenic 60.0%
GGTAGACAGGGTGAGGGTGA+GGG + chr1_3:72903240-72903259 None:intergenic 60.0%
TGGTAGACAGGGTGAGGGTG+AGG + chr1_3:72903241-72903260 None:intergenic 60.0%
GGGGAATGGTAGACAGGGTG+AGG + chr1_3:72903247-72903266 None:intergenic 60.0%
!! GGTGGTGGGGAATGGTAGAC+AGG + chr1_3:72903253-72903272 None:intergenic 60.0%
!! GTGTTGGTGGTGGTGGGGAA+TGG + chr1_3:72903261-72903280 None:intergenic 60.0%
!! GTGTGGTGTTGGTGGTGGTG+GGG + chr1_3:72903266-72903285 None:intergenic 60.0%
TAGGTGTGAACTGGGGGTGG+AGG + chr1_3:72903313-72903332 None:intergenic 60.0%
GGTGGAGGAGAGTGGTAGAC+TGG + chr1_3:72903343-72903362 None:intergenic 60.0%
GTGTGATGAACTGGGGGTGG+AGG + chr1_3:72903358-72903377 None:intergenic 60.0%
GGTGGAGGAGAGTGGTAGAC+TGG + chr1_3:72903343-72903362 None:intergenic 60.0%
TAGGTGTGAACTGGGGGTGG+AGG + chr1_3:72903313-72903332 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+TGG + chr1_3:72902962-72902981 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG + chr1_3:72902970-72902989 None:intergenic 60.0%
GGGTAAGTGTGAACTGGGGG+TGG + chr1_3:72903505-72903524 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+CGG + chr1_3:72902962-72902981 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG + chr1_3:72902970-72902989 None:intergenic 60.0%
GGGTAGGTGTGAACTGGTGG+TGG + chr1_3:72902980-72902999 None:intergenic 60.0%
TGTGGGGGGTAGGTGTGAAC+TGG + chr1_3:72903562-72903581 None:intergenic 60.0%
AACTGGGTGGGGAACGTGTG+GGG + chr1_3:72903578-72903597 None:intergenic 60.0%
GGACTGGAGGAGGAGGAGAA+TGG + chr1_3:72903603-72903622 None:intergenic 60.0%
! AGTGTGGTGGAGGTGGGGAA+TGG + chr1_3:72903624-72903643 None:intergenic 60.0%
GTGTGAACCGGTGGAGGTGG+AGG + chr1_3:72902929-72902948 None:intergenic 65.0%
GGGTAGGTGTGAACCGGTGG+AGG + chr1_3:72902935-72902954 None:intergenic 65.0%
GGTGGGGGAGAGTGGTACAC+AGG + chr1_3:72903160-72903179 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG + chr1_3:72903306-72903325 None:intergenic 65.0%
GGGTAGGTGTGAACTGGGGG+TGG + chr1_3:72903316-72903335 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG + chr1_3:72903306-72903325 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG + chr1_3:72903306-72903325 None:intergenic 65.0%
GGGTAGGTGTGAACTGGGGG+TGG + chr1_3:72903316-72903335 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG + chr1_3:72903306-72903325 None:intergenic 65.0%
GGGGGGTAGGTGTGAACTGG+TGG + chr1_3:72903559-72903578 None:intergenic 65.0%
ACTGGGTGGGGAACGTGTGG+GGG + chr1_3:72903577-72903596 None:intergenic 65.0%
!! GGGGAATGGACTGGAGGAGG+AGG + chr1_3:72903610-72903629 None:intergenic 65.0%
!! GGTGGGGAATGGACTGGAGG+AGG + chr1_3:72903613-72903632 None:intergenic 65.0%
!! GGAGGTGGGGAATGGACTGG+AGG + chr1_3:72903616-72903635 None:intergenic 65.0%
GGTGGAGGTGGGGAATGGAC+TGG + chr1_3:72903619-72903638 None:intergenic 65.0%
GGGGCAGTGCCTTACAGCTG+TGG + chr1_3:72904049-72904068 None:intergenic 65.0%
GTGTGAACCGGTGGAGGTGG+AGG + chr1_3:72902929-72902948 None:intergenic 65.0%
GGGTAGGTGTGAACCGGTGG+AGG + chr1_3:72902935-72902954 None:intergenic 65.0%
GGTGGGGGAGAGTGGTACAC+AGG + chr1_3:72903160-72903179 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG + chr1_3:72903306-72903325 None:intergenic 65.0%
GGGTAGGTGTGAACTGGGGG+TGG + chr1_3:72903316-72903335 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG + chr1_3:72903306-72903325 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG + chr1_3:72903306-72903325 None:intergenic 65.0%
GGGTAGGTGTGAACTGGGGG+TGG + chr1_3:72903316-72903335 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG + chr1_3:72903306-72903325 None:intergenic 65.0%
GGGGGGTAGGTGTGAACTGG+TGG + chr1_3:72903559-72903578 None:intergenic 65.0%
ACTGGGTGGGGAACGTGTGG+GGG + chr1_3:72903577-72903596 None:intergenic 65.0%
!! GGGGAATGGACTGGAGGAGG+AGG + chr1_3:72903610-72903629 None:intergenic 65.0%
!! GGTGGGGAATGGACTGGAGG+AGG + chr1_3:72903613-72903632 None:intergenic 65.0%
!! GGAGGTGGGGAATGGACTGG+AGG + chr1_3:72903616-72903635 None:intergenic 65.0%
GGTGGAGGTGGGGAATGGAC+TGG + chr1_3:72903619-72903638 None:intergenic 65.0%
GGGGCAGTGCCTTACAGCTG+TGG + chr1_3:72904049-72904068 None:intergenic 65.0%
!! GTGGTGGTGGTGGGGGAGAG+TGG + chr1_3:72903168-72903187 None:intergenic 70.0%
GTGGGGAACGTGTGGGGGGT+AGG + chr1_3:72903572-72903591 None:intergenic 70.0%
CTGGGTGGGGAACGTGTGGG+GGG + chr1_3:72903576-72903595 None:intergenic 70.0%
!! GTGGTGGTGGTGGGGGAGAG+TGG + chr1_3:72903168-72903187 None:intergenic 70.0%
GTGGGGAACGTGTGGGGGGT+AGG + chr1_3:72903572-72903591 None:intergenic 70.0%
CTGGGTGGGGAACGTGTGGG+GGG + chr1_3:72903576-72903595 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 72902821 72904176 72902821 ID=Msa0139270;Name=Msa0139270
chr1_3 mRNA 72902821 72904176 72902821 ID=Msa0139270-mRNA-1;Parent=Msa0139270;Name=Msa0139270-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0.33|1|0|0|3|186|292
chr1_3 exon 72902821 72903096 72902821 ID=Msa0139270-mRNA-1:exon:25422;Parent=Msa0139270-mRNA-1
chr1_3 exon 72903379 72903957 72903379 ID=Msa0139270-mRNA-1:exon:25421;Parent=Msa0139270-mRNA-1
chr1_3 exon 72903967 72904176 72903967 ID=Msa0139270-mRNA-1:exon:25420;Parent=Msa0139270-mRNA-1
chr1_3 CDS 72903967 72904176 72903967 ID=Msa0139270-mRNA-1:cds;Parent=Msa0139270-mRNA-1
chr1_3 CDS 72903379 72903957 72903379 ID=Msa0139270-mRNA-1:cds;Parent=Msa0139270-mRNA-1
chr1_3 CDS 72903007 72903096 72903007 ID=Msa0139270-mRNA-1:cds;Parent=Msa0139270-mRNA-1
chr1_3 three_prime_UTR 72902821 72903006 72902821 ID=Msa0139270-mRNA-1:three_prime_utr;Parent=Msa0139270-mRNA-1
Gene Sequence

>Msa0139270

ATGGCTCTCACTCTTGCATTAGCCATCCTCTTTTTGAGTTTCCCATCTGAAATTTCAGCAAACAAATACTCCTATTCCTCTCCACCACCACCACATTACTCATCTCCTCCACCTCCACCGGTTCACACCTACCCTAAACCAGTCTACCACTCTCCACCACCACCAGTTCACACCTACCCTAAACCAGTTTACCACTCTCCACCACCACCATACCCTCATCCACACCCAGTCTACCATTCTCCACCACCCCCAGTTCACAAGTACCCTCATCCACACCCAGTCTACCATTCTCCACCACCCCCAGTTCACAAGTACCCTCATCCTCACCCTGTGTACCACTCTCCCCCACCACCACCACCAAAGAAGTCCTACAAATACCCATCTCCACCACCCCCATTCCACAAGTACCCTCACCCTCACCCTGTCTACCATTCCCCACCACCACCAACACCACACAAGAAGCCATACAAGTACCACTCTCCTCCACCCCCAGTTCACACCTACCCTAAACCAGTCTACCACTCTCCTCCACCCCCAGTTCATCACACCTACCCTAAACCAGTCTACCACTCTCCTCCACCCCCAGTTCACACCTACCCTCATCCTAAACCAGTCTACCACTCTCCACCACCACCAGTTCACACTTACCCTAAGCCAATCTACCACTCTCCTCCACCCCCAGTTCACACTTACCCTCACCCAAAACCGGTCTACCACTCTCCACCACCACCAGTTCACACCTACCCCCCACACGTTCCCCACCCAGTTTACCATTCTCCTCCTCCTCCAGATCTAAACAGAAAGTGTGAAAGCAAAGAAAGCCATGCACAAAGAAGATCAAGGGGATTCTTCACATATATTTCGTCAGCATTTGATTAA

Protein sequence

>Msa0139270

MALTLALAILFLSFPSEISANKYSYSSPPPPHYSSPPPPPVHTYPKPVYHSPPPPVHTYPKPVYHSPPPPYPHPHPVYHSPPPPVHKYPHPHPVYHSPPPPVHKYPHPHPVYHSPPPPPPKKSYKYPSPPPPFHKYPHPHPVYHSPPPPTPHKKPYKYHSPPPPVHTYPKPVYHSPPPPVHHTYPKPVYHSPPPPVHTYPHPKPVYHSPPPPVHTYPKPIYHSPPPPVHTYPHPKPVYHSPPPPVHTYPPHVPHPVYHSPPPPDLNRKCESKESHAQRRSRGFFTYISSAFD*