AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0589730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589730 MtrunA17_Chr4g0007031 98.643 221 3 0 1 221 1 221 7.78e-161 443
Msa0589730 MtrunA17_Chr5g0419971 98.643 221 3 0 1 221 1 221 7.78e-161 443
Msa0589730 MtrunA17_Chr5g0419981 98.643 221 3 0 1 221 1 221 7.78e-161 443
Msa0589730 MtrunA17_Chr4g0007051 98.190 221 4 0 1 221 1 221 2.66e-160 442
Msa0589730 MtrunA17_Chr2g0285871 97.285 221 6 0 1 221 1 221 2.36e-159 439
Msa0589730 MtrunA17_Chr4g0007041 97.738 221 5 0 1 221 1 221 3.17e-159 439
Msa0589730 MtrunA17_Chr1g0189841 81.081 222 41 1 1 221 1 222 6.75e-131 367
Msa0589730 MtrunA17_Chr6g0449771 77.064 218 48 2 4 221 5 220 4.57e-118 335
Msa0589730 MtrunA17_Chr6g0449751 76.577 222 49 3 1 221 1 220 6.28e-118 334
Msa0589730 MtrunA17_Chr6g0449731 76.959 217 48 2 4 220 5 219 1.94e-117 333
Msa0589730 MtrunA17_Chr6g0449761 75.115 217 53 1 1 217 1 216 1.31e-115 330
Msa0589730 MtrunA17_Chr6g0449781 63.470 219 77 3 3 221 4 219 1.48e-90 265
Msa0589730 MtrunA17_Chr6g0449791 61.058 208 81 0 1 208 1 208 9.09e-88 258
Msa0589730 MtrunA17_Chr1g0156131 59.908 217 76 3 1 215 1 208 1.03e-81 242
Msa0589730 MtrunA17_Chr2g0292831 60.500 200 69 4 19 215 19 211 5.70e-78 233
Msa0589730 MtrunA17_Chr2g0292901 57.991 219 81 5 1 215 1 212 3.99e-74 223
Msa0589730 MtrunA17_Chr2g0292861 64.162 173 56 4 47 215 7 177 1.00e-71 216
Msa0589730 MtrunA17_Chr2g0292841 63.584 173 57 4 47 215 7 177 1.03e-69 211
Msa0589730 MtrunA17_Chr1g0193671 46.009 213 108 3 5 215 6 213 2.41e-60 188
Msa0589730 MtrunA17_Chr1g0193421 46.000 200 101 3 18 215 20 214 9.06e-54 172
Msa0589730 MtrunA17_Chr7g0271211 47.449 196 96 3 22 215 20 210 3.02e-52 167
Msa0589730 MtrunA17_Chr5g0414971 45.685 197 99 4 22 215 27 218 1.61e-49 161
Msa0589730 MtrunA17_Chr2g0292911 65.833 120 36 3 47 163 7 124 1.96e-47 153
Msa0589730 MtrunA17_Chr1g0210761 41.346 208 90 7 19 215 20 206 1.67e-43 145
Msa0589730 MtrunA17_Chr2g0300561 45.213 188 94 4 28 213 23 203 1.31e-42 143
Msa0589730 MtrunA17_Chr1g0178711 37.104 221 127 5 2 215 5 220 3.11e-42 142
Msa0589730 MtrunA17_Chr2g0300581 38.498 213 114 5 4 214 7 204 7.93e-39 133
Msa0589730 MtrunA17_Chr2g0300591 38.679 212 113 5 4 213 7 203 1.02e-38 133
Msa0589730 MtrunA17_Chr8g0335851 40.000 200 107 4 22 219 26 214 3.34e-36 127
Msa0589730 MtrunA17_Chr8g0343911 40.838 191 104 5 26 214 19 202 7.57e-35 123
Msa0589730 MtrunA17_Chr8g0344021 39.594 197 99 5 1 190 1 184 2.77e-34 121
Msa0589730 MtrunA17_Chr3g0084531 39.378 193 107 5 7 197 3 187 7.56e-33 117
Msa0589730 MtrunA17_Chr8g0343934 39.227 181 97 5 1 179 1 170 1.19e-32 117
Msa0589730 MtrunA17_Chr2g0297231 36.967 211 117 6 1 206 1 200 3.63e-31 113
Msa0589730 MtrunA17_Chr2g0297241 36.967 211 117 6 1 206 1 200 4.32e-31 113
Msa0589730 MtrunA17_Chr2g0313961 36.967 211 117 6 1 206 1 200 9.52e-31 112
Msa0589730 MtrunA17_Chr8g0343954 35.938 192 112 5 26 215 22 204 2.38e-30 111
Msa0589730 MtrunA17_Chr8g0344051 40.223 179 95 4 1 176 1 170 3.73e-30 110
Msa0589730 MtrunA17_Chr8g0343961 34.101 217 128 6 1 215 1 204 1.53e-29 109
Msa0589730 MtrunA17_Chr3g0130241 38.202 178 104 3 4 179 71 244 2.79e-29 110
Msa0589730 MtrunA17_Chr3g0084511 39.655 174 95 5 26 197 21 186 4.23e-29 108
Msa0589730 MtrunA17_Chr3g0084521 37.313 201 107 7 1 197 1 186 5.83e-29 107
Msa0589730 MtrunA17_Chr2g0301611 36.872 179 100 5 1 177 1 168 2.14e-28 106
Msa0589730 MtrunA17_Chr2g0321601 34.101 217 117 7 2 214 7 201 2.41e-28 106
Msa0589730 MtrunA17_Chr2g0302171 36.493 211 118 6 1 206 1 200 4.86e-28 105
Msa0589730 MtrunA17_Chr4g0026191 34.562 217 115 7 3 214 9 203 8.41e-28 104
Msa0589730 MtrunA17_Chr4g0026201 35.784 204 105 6 16 214 21 203 1.73e-27 103
Msa0589730 MtrunA17_Chr2g0321581 33.023 215 122 6 2 214 8 202 2.01e-27 103
Msa0589730 MtrunA17_Chr2g0321591 32.558 215 123 6 2 214 8 202 5.39e-27 102
Msa0589730 MtrunA17_Chr2g0302541 38.172 186 103 5 26 206 22 200 6.57e-27 102
Msa0589730 MtrunA17_Chr5g0411961 34.286 210 124 5 1 206 1 200 8.76e-27 102
Msa0589730 MtrunA17_Chr8g0343921 33.953 215 125 7 1 213 1 200 1.21e-25 99.4
Msa0589730 MtrunA17_Chr8g0344041 34.434 212 121 6 1 206 5 204 1.32e-25 99.4
Msa0589730 MtrunA17_Chr8g0344031 33.641 217 131 6 1 215 1 206 2.96e-25 98.2
Msa0589730 MtrunA17_Chr4g0003361 35.321 218 116 8 2 215 4 200 4.34e-25 97.8
Msa0589730 MtrunA17_Chr7g0217811 37.097 186 105 5 26 206 22 200 1.14e-24 96.7
Msa0589730 MtrunA17_Chr4g0012651 37.097 186 105 5 26 206 22 200 3.15e-24 95.5
Msa0589730 MtrunA17_Chr2g0286171 32.420 219 132 7 1 215 1 207 8.09e-24 94.4
Msa0589730 MtrunA17_Chr3g0115141 35.484 186 104 6 27 206 26 201 2.04e-23 93.6
Msa0589730 MtrunA17_Chr2g0292881 65.517 58 19 1 93 150 1 57 3.58e-20 80.5
Msa0589730 MtrunA17_Chr3g0084551 33.659 205 114 9 1 202 1 186 2.35e-19 83.2
Msa0589730 MtrunA17_Chr3g0084501 38.393 112 60 4 1 110 1 105 3.32e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589730 AT3G05950.1 65.333 225 70 4 4 221 5 228 2.59e-96 280
Msa0589730 AT5G39150.1 63.761 218 76 2 1 215 1 218 1.49e-94 276
Msa0589730 AT5G39180.1 63.761 218 76 2 1 215 1 218 2.87e-94 275
Msa0589730 AT5G39120.1 64.929 211 71 2 7 215 9 218 4.64e-94 275
Msa0589730 AT5G39110.1 64.455 211 73 1 7 215 9 219 1.62e-92 270
Msa0589730 AT5G39160.1 64.384 219 73 3 1 215 1 218 2.04e-92 270
Msa0589730 AT5G39190.1 64.384 219 73 3 1 215 1 218 3.42e-92 270
Msa0589730 AT5G39130.1 65.072 209 70 2 9 215 11 218 8.47e-92 269
Msa0589730 AT4G14630.1 61.187 219 81 2 1 215 3 221 6.08e-88 259
Msa0589730 AT5G39160.3 62.100 219 74 3 1 215 1 214 1.18e-87 258
Msa0589730 AT3G04200.1 60.930 215 81 3 1 213 6 219 7.75e-85 251
Msa0589730 AT5G39190.2 58.525 217 67 2 1 215 1 196 3.67e-80 238
Msa0589730 AT5G39160.2 58.065 217 68 2 1 215 1 196 1.18e-79 237
Msa0589730 AT5G38910.1 59.545 220 82 4 1 215 1 218 9.45e-79 236
Msa0589730 AT5G38960.1 60.697 201 75 3 18 215 22 221 8.87e-78 233
Msa0589730 AT5G38940.1 60.714 196 74 2 22 215 26 220 1.48e-77 233
Msa0589730 AT5G38940.2 60.714 196 74 2 22 215 50 244 2.30e-77 233
Msa0589730 AT5G38930.1 61.616 198 73 2 20 215 24 220 2.45e-77 232
Msa0589730 AT3G04170.1 55.981 209 86 3 8 214 12 216 8.87e-75 226
Msa0589730 AT3G04190.1 56.219 201 85 2 15 213 19 218 6.69e-74 223
Msa0589730 AT3G04150.1 53.917 217 94 3 3 214 4 219 1.44e-72 220
Msa0589730 AT3G04180.1 54.726 201 88 2 15 213 19 218 8.76e-71 215
Msa0589730 AT3G04150.2 51.092 229 95 3 3 214 4 232 1.01e-70 216
Msa0589730 AT1G02335.1 46.465 198 99 3 20 215 22 214 6.67e-56 177
Msa0589730 AT5G38910.2 48.636 220 69 4 1 215 1 181 3.11e-55 174
Msa0589730 AT3G62020.1 45.161 217 110 5 2 215 4 214 5.90e-55 175
Msa0589730 AT1G09560.1 45.274 201 103 3 17 215 19 214 2.85e-53 171
Msa0589730 AT3G05930.1 46.798 203 99 4 3 202 5 201 2.58e-52 168
Msa0589730 AT1G18970.1 46.000 200 99 4 18 215 25 217 3.71e-51 165
Msa0589730 AT5G26700.1 46.875 192 88 5 26 213 25 206 1.24e-50 164
Msa0589730 AT1G18980.1 45.500 200 100 4 18 215 25 217 5.68e-49 160
Msa0589730 AT3G62020.2 46.667 180 90 3 39 215 9 185 2.12e-47 155
Msa0589730 AT1G10460.1 41.414 198 108 5 22 214 19 213 3.45e-44 147
Msa0589730 AT3G10080.1 40.099 202 112 5 18 215 22 218 4.29e-44 147
Msa0589730 AT3G10080.2 40.099 202 112 5 18 215 93 289 1.68e-43 148
Msa0589730 AT5G20630.1 41.905 210 110 6 1 208 1 200 5.15e-42 142
Msa0589730 AT5G61750.1 41.081 185 104 2 4 186 1 182 5.77e-40 136
Msa0589730 AT1G72610.1 41.053 190 103 6 26 213 19 201 4.26e-34 121
Msa0589730 AT1G74820.1 38.660 194 110 4 24 215 38 224 4.57e-33 119
Msa0589730 AT5G38950.1 54.167 72 33 0 145 216 2 73 1.45e-18 78.2

Find 62 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATACATACCACCATCTT+TGG 0.255130 4_2:-12983695 None:intergenic
TTTCAACTGAATGTGGGATA+TGG 0.310660 4_2:+12984304 Msa0589730:CDS
CCTTGTTAGCATCTTGGCTT+TGG 0.311083 4_2:+12983606 Msa0589730:CDS
TGAAAATGAATTAGACCAAT+TGG 0.315504 4_2:-12984286 None:intergenic
GTACTTCCTTGTTAGCATCT+TGG 0.325278 4_2:+12983600 Msa0589730:CDS
TTGAGATCCTAGTGCATTAG+AGG 0.333822 4_2:-12984035 None:intergenic
CTTATCCACTTGAAAAGCTT+TGG 0.335788 4_2:-12984431 None:intergenic
TAACACGCTTGGTATATCTT+TGG 0.340502 4_2:+12984093 Msa0589730:CDS
GAGTGCCTTCGAGTACTATA+AGG 0.397511 4_2:-12984180 None:intergenic
TTCTTCAAACATGTTGAAGC+TGG 0.402098 4_2:+12984007 Msa0589730:CDS
ATATACATACCACCATCTTT+GGG 0.405165 4_2:-12983694 None:intergenic
GGCAACGCTGTTGCTATTGC+TGG 0.409649 4_2:+12984325 Msa0589730:CDS
CTCTAGGGTGGATGTGAGGT+GGG 0.411548 4_2:-12984147 None:intergenic
GATGTGTTTGTGTTCCCAAT+TGG 0.424230 4_2:+12984271 Msa0589730:CDS
TAAAGAGCCGGTTGTTGTCT+TGG 0.425026 4_2:-12984228 None:intergenic
CAAAAGTCTTGGAGAGGGCT+AGG 0.434671 4_2:-12983655 None:intergenic
TAATTTGCAGTATTCGTGAA+TGG 0.437869 4_2:+12983944 Msa0589730:intron
ATTATCTTCAAAAGCAGTCT+TGG 0.442184 4_2:+12984464 Msa0589730:CDS
CTCGAAGGCACTCTTTATGT+TGG 0.443268 4_2:+12984190 Msa0589730:CDS
TCTTCAGCTTTAACAAGTGC+GGG 0.444792 4_2:-12983983 None:intergenic
GTCACTGTAGACCAACTATT+CGG 0.446134 4_2:+12984067 Msa0589730:CDS
CATCAAACCAAGACAACAAC+CGG 0.452231 4_2:+12984221 Msa0589730:CDS
TCTGAATGGATAATTGACTT+TGG 0.460165 4_2:+12984512 Msa0589730:three_prime_UTR
GAAAATGAATTAGACCAATT+GGG 0.461091 4_2:-12984285 None:intergenic
ATAAGGATCTCTGTTCCTCT+AGG 0.468428 4_2:-12984163 None:intergenic
TTTGCAACGGTGATAACTCC+TGG 0.470922 4_2:-12984364 None:intergenic
TGATTGCAACACAAAAGTCT+TGG 0.490396 4_2:-12983666 None:intergenic
AATTTGCAGTATTCGTGAAT+GGG 0.491761 4_2:+12983945 Msa0589730:intron
CCTCTAGGGTGGATGTGAGG+TGG 0.496940 4_2:-12984148 None:intergenic
TCTTCAAACATGTTGAAGCT+GGG 0.501315 4_2:+12984008 Msa0589730:CDS
CTATTCGGACTTAACACGCT+TGG 0.510323 4_2:+12984082 Msa0589730:CDS
AGAACTTCGTCGGAAATAAG+AGG 0.511108 4_2:-12984406 None:intergenic
TTGGTATGACAACAACTAGT+TGG 0.511389 4_2:+12984483 Msa0589730:exon
AATAGTTGGTCTACAGTGAC+TGG 0.527501 4_2:-12984064 None:intergenic
GCGTGTTAAGTCCGAATAGT+TGG 0.534502 4_2:-12984078 None:intergenic
TGAGGTGGGTTTAAACCCTT+AGG 0.537084 4_2:-12984133 None:intergenic
ATCTTCAGCTTTAACAAGTG+CGG 0.543612 4_2:-12983984 None:intergenic
CTTTACCAAGGTGCTCAACA+AGG 0.544491 4_2:+12984246 Msa0589730:CDS
CTAGTTGGAGATACTCTGAA+TGG 0.548151 4_2:+12984498 Msa0589730:exon
GCAATCAAAGACCCCAAAGA+TGG 0.554146 4_2:+12983682 Msa0589730:CDS
AGCTTTGGTAAGAACTTCGT+CGG 0.555884 4_2:-12984416 None:intergenic
CCAAAGCCAAGATGCTAACA+AGG 0.556137 4_2:-12983606 None:intergenic
AAAAGTCTTGGAGAGGGCTA+GGG 0.564154 4_2:-12983654 None:intergenic
ATCACCCTTGTTGAGCACCT+TGG 0.567836 4_2:-12984251 None:intergenic
TAAGGATCTCTGTTCCTCTA+GGG 0.571738 4_2:-12984162 None:intergenic
GGACTTAGCAGTCAAAATCC+AGG 0.578792 4_2:+12984346 Msa0589730:CDS
TGAGCACCTTGGTAAAGAGC+CGG 0.579420 4_2:-12984240 None:intergenic
AAGAGAGATTTGCTTGCACA+AGG 0.583257 4_2:-12984546 None:intergenic
GGGAATGCCTCTAATGCACT+AGG 0.589101 4_2:+12984028 Msa0589730:CDS
GGATCTCTGTTCCTCTAGGG+TGG 0.590427 4_2:-12984159 None:intergenic
TTTAAACAAAGCATTTGCAA+CGG 0.590900 4_2:-12984377 None:intergenic
AGGGCTAGGGTCATAAGCAA+AGG 0.622370 4_2:-12983641 None:intergenic
ATCAAAGACCCCAAAGATGG+TGG 0.628410 4_2:+12983685 Msa0589730:CDS
TATACATACCACCATCTTTG+GGG 0.639620 4_2:-12983693 None:intergenic
CAACACAAAAGTCTTGGAGA+GGG 0.641422 4_2:-12983660 None:intergenic
GTTCCTCTAGGGTGGATGTG+AGG 0.650118 4_2:-12984151 None:intergenic
GCAACACAAAAGTCTTGGAG+AGG 0.651085 4_2:-12983661 None:intergenic
CCACCTCACATCCACCCTAG+AGG 0.660499 4_2:+12984148 Msa0589730:CDS
CTTCAGCTTTAACAAGTGCG+GGG 0.662073 4_2:-12983982 None:intergenic
GAGATCCTTATAGTACTCGA+AGG 0.666965 4_2:+12984175 Msa0589730:CDS
TTTACCAAGGTGCTCAACAA+GGG 0.669433 4_2:+12984247 Msa0589730:CDS
CAACAACCGGCTCTTTACCA+AGG 0.674974 4_2:+12984234 Msa0589730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTCAATAAATATATTTTTA+TGG + chr4_2:12983800-12983819 Msa0589730:intron 10.0%
!!! TCTCAATAAATATATTTTTA+TGG + chr4_2:12983800-12983819 Msa0589730:intron 10.0%
!!! TTAATTACTACTCAATTTTT+AGG + chr4_2:12983729-12983748 Msa0589730:intron 15.0%
!! TAAAATGTTTGATATTTGTA+AGG - chr4_2:12983773-12983792 None:intergenic 15.0%
!!! TTAATTACTACTCAATTTTT+AGG + chr4_2:12983729-12983748 Msa0589730:intron 15.0%
!! TAAAATGTTTGATATTTGTA+AGG - chr4_2:12983773-12983792 None:intergenic 15.0%
!!! ATGTATAGAATCTTTTGTTT+TGG + chr4_2:12983836-12983855 Msa0589730:intron 20.0%
!!! ATGTATAGAATCTTTTGTTT+TGG + chr4_2:12983836-12983855 Msa0589730:intron 20.0%
! TGAGTAGTAATTAAGACTTA+AGG - chr4_2:12983723-12983742 None:intergenic 25.0%
! GAAAATGAATTAGACCAATT+GGG - chr4_2:12984288-12984307 None:intergenic 25.0%
! TGAAAATGAATTAGACCAAT+TGG - chr4_2:12984289-12984308 None:intergenic 25.0%
!! AATTCATTTTCAACTGAATG+TGG + chr4_2:12984297-12984316 Msa0589730:CDS 25.0%
!! ATTCATTTTCAACTGAATGT+GGG + chr4_2:12984298-12984317 Msa0589730:CDS 25.0%
!! TTTAAACAAAGCATTTGCAA+CGG - chr4_2:12984380-12984399 None:intergenic 25.0%
! TGAGTAGTAATTAAGACTTA+AGG - chr4_2:12983723-12983742 None:intergenic 25.0%
! GAAAATGAATTAGACCAATT+GGG - chr4_2:12984288-12984307 None:intergenic 25.0%
! TGAAAATGAATTAGACCAAT+TGG - chr4_2:12984289-12984308 None:intergenic 25.0%
!! AATTCATTTTCAACTGAATG+TGG + chr4_2:12984297-12984316 Msa0589730:CDS 25.0%
!! ATTCATTTTCAACTGAATGT+GGG + chr4_2:12984298-12984317 Msa0589730:CDS 25.0%
!! TTTAAACAAAGCATTTGCAA+CGG - chr4_2:12984380-12984399 None:intergenic 25.0%
ATATACATACCACCATCTTT+GGG - chr4_2:12983697-12983716 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG - chr4_2:12983698-12983717 None:intergenic 30.0%
! TAATTTGCAGTATTCGTGAA+TGG + chr4_2:12983944-12983963 Msa0589730:intron 30.0%
AATTTGCAGTATTCGTGAAT+GGG + chr4_2:12983945-12983964 Msa0589730:intron 30.0%
ATTATCTTCAAAAGCAGTCT+TGG + chr4_2:12984464-12984483 Msa0589730:CDS 30.0%
! TCTGAATGGATAATTGACTT+TGG + chr4_2:12984512-12984531 Msa0589730:three_prime_UTR 30.0%
!! GTTTTGCTATGAGTTCAATT+TGG + chr4_2:12984622-12984641 Msa0589730:three_prime_UTR 30.0%
ACTCAGTACTACTCTTTAAT+TGG - chr4_2:12983563-12983582 None:intergenic 30.0%
ATATACATACCACCATCTTT+GGG - chr4_2:12983697-12983716 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG - chr4_2:12983698-12983717 None:intergenic 30.0%
! TAATTTGCAGTATTCGTGAA+TGG + chr4_2:12983944-12983963 Msa0589730:intron 30.0%
AATTTGCAGTATTCGTGAAT+GGG + chr4_2:12983945-12983964 Msa0589730:intron 30.0%
ATTATCTTCAAAAGCAGTCT+TGG + chr4_2:12984464-12984483 Msa0589730:CDS 30.0%
! TCTGAATGGATAATTGACTT+TGG + chr4_2:12984512-12984531 Msa0589730:three_prime_UTR 30.0%
!! GTTTTGCTATGAGTTCAATT+TGG + chr4_2:12984622-12984641 Msa0589730:three_prime_UTR 30.0%
TGATTGCAACACAAAAGTCT+TGG - chr4_2:12983669-12983688 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG - chr4_2:12983696-12983715 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG - chr4_2:12983987-12984006 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG + chr4_2:12984007-12984026 Msa0589730:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG + chr4_2:12984008-12984027 Msa0589730:CDS 35.0%
TAACACGCTTGGTATATCTT+TGG + chr4_2:12984093-12984112 Msa0589730:CDS 35.0%
TTTCAACTGAATGTGGGATA+TGG + chr4_2:12984304-12984323 Msa0589730:CDS 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG + chr4_2:12984426-12984445 Msa0589730:CDS 35.0%
CTTATCCACTTGAAAAGCTT+TGG - chr4_2:12984434-12984453 None:intergenic 35.0%
TTGGTATGACAACAACTAGT+TGG + chr4_2:12984483-12984502 Msa0589730:exon 35.0%
TGATTGCAACACAAAAGTCT+TGG - chr4_2:12983669-12983688 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG - chr4_2:12983696-12983715 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG - chr4_2:12983987-12984006 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG + chr4_2:12984007-12984026 Msa0589730:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG + chr4_2:12984008-12984027 Msa0589730:CDS 35.0%
TAACACGCTTGGTATATCTT+TGG + chr4_2:12984093-12984112 Msa0589730:CDS 35.0%
TTTCAACTGAATGTGGGATA+TGG + chr4_2:12984304-12984323 Msa0589730:CDS 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG + chr4_2:12984426-12984445 Msa0589730:CDS 35.0%
CTTATCCACTTGAAAAGCTT+TGG - chr4_2:12984434-12984453 None:intergenic 35.0%
TTGGTATGACAACAACTAGT+TGG + chr4_2:12984483-12984502 Msa0589730:exon 35.0%
GTACTTCCTTGTTAGCATCT+TGG + chr4_2:12983600-12983619 Msa0589730:CDS 40.0%
CAACACAAAAGTCTTGGAGA+GGG - chr4_2:12983663-12983682 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG - chr4_2:12983986-12984005 None:intergenic 40.0%
TTGAGATCCTAGTGCATTAG+AGG - chr4_2:12984038-12984057 None:intergenic 40.0%
! AATAGTTGGTCTACAGTGAC+TGG - chr4_2:12984067-12984086 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG + chr4_2:12984067-12984086 Msa0589730:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG - chr4_2:12984165-12984184 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG - chr4_2:12984166-12984185 None:intergenic 40.0%
GAGATCCTTATAGTACTCGA+AGG + chr4_2:12984175-12984194 Msa0589730:CDS 40.0%
CATCAAACCAAGACAACAAC+CGG + chr4_2:12984221-12984240 Msa0589730:CDS 40.0%
! TTTACCAAGGTGCTCAACAA+GGG + chr4_2:12984247-12984266 Msa0589730:CDS 40.0%
GATGTGTTTGTGTTCCCAAT+TGG + chr4_2:12984271-12984290 Msa0589730:CDS 40.0%
AGAACTTCGTCGGAAATAAG+AGG - chr4_2:12984409-12984428 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG - chr4_2:12984419-12984438 None:intergenic 40.0%
CTAGTTGGAGATACTCTGAA+TGG + chr4_2:12984498-12984517 Msa0589730:exon 40.0%
! AAGAGAGATTTGCTTGCACA+AGG - chr4_2:12984549-12984568 None:intergenic 40.0%
GTACTTCCTTGTTAGCATCT+TGG + chr4_2:12983600-12983619 Msa0589730:CDS 40.0%
CAACACAAAAGTCTTGGAGA+GGG - chr4_2:12983663-12983682 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG - chr4_2:12983986-12984005 None:intergenic 40.0%
TTGAGATCCTAGTGCATTAG+AGG - chr4_2:12984038-12984057 None:intergenic 40.0%
! AATAGTTGGTCTACAGTGAC+TGG - chr4_2:12984067-12984086 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG + chr4_2:12984067-12984086 Msa0589730:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG - chr4_2:12984165-12984184 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG - chr4_2:12984166-12984185 None:intergenic 40.0%
GAGATCCTTATAGTACTCGA+AGG + chr4_2:12984175-12984194 Msa0589730:CDS 40.0%
CATCAAACCAAGACAACAAC+CGG + chr4_2:12984221-12984240 Msa0589730:CDS 40.0%
! TTTACCAAGGTGCTCAACAA+GGG + chr4_2:12984247-12984266 Msa0589730:CDS 40.0%
GATGTGTTTGTGTTCCCAAT+TGG + chr4_2:12984271-12984290 Msa0589730:CDS 40.0%
AGAACTTCGTCGGAAATAAG+AGG - chr4_2:12984409-12984428 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG - chr4_2:12984419-12984438 None:intergenic 40.0%
CTAGTTGGAGATACTCTGAA+TGG + chr4_2:12984498-12984517 Msa0589730:exon 40.0%
! AAGAGAGATTTGCTTGCACA+AGG - chr4_2:12984549-12984568 None:intergenic 40.0%
CCAAAGCCAAGATGCTAACA+AGG - chr4_2:12983609-12983628 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG + chr4_2:12983606-12983625 Msa0589730:CDS 45.0%
AAAAGTCTTGGAGAGGGCTA+GGG - chr4_2:12983657-12983676 None:intergenic 45.0%
GCAACACAAAAGTCTTGGAG+AGG - chr4_2:12983664-12983683 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG + chr4_2:12983682-12983701 Msa0589730:CDS 45.0%
ATCAAAGACCCCAAAGATGG+TGG + chr4_2:12983685-12983704 Msa0589730:CDS 45.0%
! TTTTGGTCCTCAGTGATTGC+TGG + chr4_2:12983853-12983872 Msa0589730:intron 45.0%
AGCTAAACCAGCAATCACTG+AGG - chr4_2:12983863-12983882 None:intergenic 45.0%
!! CAGTGATTGCTGGTTTAGCT+AGG + chr4_2:12983863-12983882 Msa0589730:intron 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG - chr4_2:12983985-12984004 None:intergenic 45.0%
GCGTGTTAAGTCCGAATAGT+TGG - chr4_2:12984081-12984100 None:intergenic 45.0%
CTATTCGGACTTAACACGCT+TGG + chr4_2:12984082-12984101 Msa0589730:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG - chr4_2:12984136-12984155 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG - chr4_2:12984183-12984202 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG + chr4_2:12984190-12984209 Msa0589730:CDS 45.0%
TAAAGAGCCGGTTGTTGTCT+TGG - chr4_2:12984231-12984250 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG + chr4_2:12984246-12984265 Msa0589730:CDS 45.0%
GGACTTAGCAGTCAAAATCC+AGG + chr4_2:12984346-12984365 Msa0589730:CDS 45.0%
TTTGCAACGGTGATAACTCC+TGG - chr4_2:12984367-12984386 None:intergenic 45.0%
CCAAAGCCAAGATGCTAACA+AGG - chr4_2:12983609-12983628 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG + chr4_2:12983606-12983625 Msa0589730:CDS 45.0%
AAAAGTCTTGGAGAGGGCTA+GGG - chr4_2:12983657-12983676 None:intergenic 45.0%
GCAACACAAAAGTCTTGGAG+AGG - chr4_2:12983664-12983683 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG + chr4_2:12983682-12983701 Msa0589730:CDS 45.0%
ATCAAAGACCCCAAAGATGG+TGG + chr4_2:12983685-12983704 Msa0589730:CDS 45.0%
! TTTTGGTCCTCAGTGATTGC+TGG + chr4_2:12983853-12983872 Msa0589730:intron 45.0%
AGCTAAACCAGCAATCACTG+AGG - chr4_2:12983863-12983882 None:intergenic 45.0%
!! CAGTGATTGCTGGTTTAGCT+AGG + chr4_2:12983863-12983882 Msa0589730:intron 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG - chr4_2:12983985-12984004 None:intergenic 45.0%
GCGTGTTAAGTCCGAATAGT+TGG - chr4_2:12984081-12984100 None:intergenic 45.0%
CTATTCGGACTTAACACGCT+TGG + chr4_2:12984082-12984101 Msa0589730:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG - chr4_2:12984136-12984155 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG - chr4_2:12984183-12984202 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG + chr4_2:12984190-12984209 Msa0589730:CDS 45.0%
TAAAGAGCCGGTTGTTGTCT+TGG - chr4_2:12984231-12984250 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG + chr4_2:12984246-12984265 Msa0589730:CDS 45.0%
GGACTTAGCAGTCAAAATCC+AGG + chr4_2:12984346-12984365 Msa0589730:CDS 45.0%
TTTGCAACGGTGATAACTCC+TGG - chr4_2:12984367-12984386 None:intergenic 45.0%
AGGGCTAGGGTCATAAGCAA+AGG - chr4_2:12983644-12983663 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+AGG - chr4_2:12983658-12983677 None:intergenic 50.0%
GGGAATGCCTCTAATGCACT+AGG + chr4_2:12984028-12984047 Msa0589730:CDS 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG + chr4_2:12984117-12984136 Msa0589730:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG + chr4_2:12984118-12984137 Msa0589730:CDS 50.0%
! CAACAACCGGCTCTTTACCA+AGG + chr4_2:12984234-12984253 Msa0589730:CDS 50.0%
TGAGCACCTTGGTAAAGAGC+CGG - chr4_2:12984243-12984262 None:intergenic 50.0%
ATCACCCTTGTTGAGCACCT+TGG - chr4_2:12984254-12984273 None:intergenic 50.0%
AGGGCTAGGGTCATAAGCAA+AGG - chr4_2:12983644-12983663 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+AGG - chr4_2:12983658-12983677 None:intergenic 50.0%
GGGAATGCCTCTAATGCACT+AGG + chr4_2:12984028-12984047 Msa0589730:CDS 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG + chr4_2:12984117-12984136 Msa0589730:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG + chr4_2:12984118-12984137 Msa0589730:CDS 50.0%
! CAACAACCGGCTCTTTACCA+AGG + chr4_2:12984234-12984253 Msa0589730:CDS 50.0%
TGAGCACCTTGGTAAAGAGC+CGG - chr4_2:12984243-12984262 None:intergenic 50.0%
ATCACCCTTGTTGAGCACCT+TGG - chr4_2:12984254-12984273 None:intergenic 50.0%
!! CTCTAGGGTGGATGTGAGGT+GGG - chr4_2:12984150-12984169 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG - chr4_2:12984154-12984173 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG - chr4_2:12984162-12984181 None:intergenic 55.0%
! GGCAACGCTGTTGCTATTGC+TGG + chr4_2:12984325-12984344 Msa0589730:CDS 55.0%
!! CTCTAGGGTGGATGTGAGGT+GGG - chr4_2:12984150-12984169 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG - chr4_2:12984154-12984173 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG - chr4_2:12984162-12984181 None:intergenic 55.0%
! GGCAACGCTGTTGCTATTGC+TGG + chr4_2:12984325-12984344 Msa0589730:CDS 55.0%
!! CCTCTAGGGTGGATGTGAGG+TGG - chr4_2:12984151-12984170 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG + chr4_2:12984148-12984167 Msa0589730:CDS 60.0%
!! CCTCTAGGGTGGATGTGAGG+TGG - chr4_2:12984151-12984170 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG + chr4_2:12984148-12984167 Msa0589730:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 12983563 12984705 12983563 ID=Msa0589730;Name=Msa0589730
chr4_2 mRNA 12983563 12984705 12983563 ID=Msa0589730-mRNA-1;Parent=Msa0589730;Name=Msa0589730-mRNA-1;_AED=0.00;_eAED=0.00;_QI=26|1|1|1|1|1|2|204|221
chr4_2 exon 12983563 12983706 12983563 ID=Msa0589730-mRNA-1:exon:3762;Parent=Msa0589730-mRNA-1
chr4_2 exon 12983954 12984705 12983954 ID=Msa0589730-mRNA-1:exon:3763;Parent=Msa0589730-mRNA-1
chr4_2 five_prime_UTR 12983563 12983588 12983563 ID=Msa0589730-mRNA-1:five_prime_utr;Parent=Msa0589730-mRNA-1
chr4_2 CDS 12983589 12983706 12983589 ID=Msa0589730-mRNA-1:cds;Parent=Msa0589730-mRNA-1
chr4_2 CDS 12983954 12984501 12983954 ID=Msa0589730-mRNA-1:cds;Parent=Msa0589730-mRNA-1
chr4_2 three_prime_UTR 12984502 12984705 12984502 ID=Msa0589730-mRNA-1:three_prime_utr;Parent=Msa0589730-mRNA-1
Gene Sequence

>Msa0589730

ATGAAGATTTTGTACTTCCTTGTTAGCATCTTGGCTTTGGCATCATCTGTTGCCTTTGCTTATGACCCTAGCCCTCTCCAAGACTTTTGTGTTGCAATCAAAGACCCCAAAGATGGTGTATTCGTGAATGGGAAATTCTGTAAAGACCCCGCACTTGTTAAAGCTGAAGATTTCTTCAAACATGTTGAAGCTGGGAATGCCTCTAATGCACTAGGATCTCAAGTGACTCCAGTCACTGTAGACCAACTATTCGGACTTAACACGCTTGGTATATCTTTGGCTCGCGTTGATTTTGCGCCTAAGGGTTTAAACCCACCTCACATCCACCCTAGAGGAACAGAGATCCTTATAGTACTCGAAGGCACTCTTTATGTTGGATTTGTCTCATCAAACCAAGACAACAACCGGCTCTTTACCAAGGTGCTCAACAAGGGTGATGTGTTTGTGTTCCCAATTGGTCTAATTCATTTTCAACTGAATGTGGGATATGGCAACGCTGTTGCTATTGCTGGACTTAGCAGTCAAAATCCAGGAGTTATCACCGTTGCAAATGCTTTGTTTAAATCTGATCCTCTTATTTCCGACGAAGTTCTTACCAAAGCTTTTCAAGTGGATAAGAGCATAATTGATTATCTTCAAAAGCAGTCTTGGTATGACAACAACTAG

Protein sequence

>Msa0589730

MKILYFLVSILALASSVAFAYDPSPLQDFCVAIKDPKDGVFVNGKFCKDPALVKAEDFFKHVEAGNASNALGSQVTPVTVDQLFGLNTLGISLARVDFAPKGLNPPHIHPRGTEILIVLEGTLYVGFVSSNQDNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITVANALFKSDPLISDEVLTKAFQVDKSIIDYLQKQSWYDNN*