Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716230 | XP_003611934.1 | 98.762 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716230 | sp|Q94A43|BEH2_ARATH | 65.015 | 323 | 83 | 13 | 9 | 323 | 16 | 316 | 8.67e-101 | 301 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716230 | G7KC60 | 98.762 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 0.0 | 650 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0716230 | TF | BES1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0616560 | Msa0716230 | 0.803494 | 3.393253e-49 | -8.615850e-47 |
| Msa0655990 | Msa0716230 | 0.820389 | 7.039447e-53 | -8.615850e-47 |
| Msa0699920 | Msa0716230 | 0.813813 | 2.116399e-51 | -8.615850e-47 |
| Msa0716230 | Msa0757540 | 0.886164 | 4.339606e-72 | -8.615850e-47 |
| Msa0716230 | Msa0781220 | 0.832174 | 1.099064e-55 | -8.615850e-47 |
| Msa0716230 | Msa0961420 | 0.815720 | 7.999875e-52 | -8.615850e-47 |
| Msa0716230 | Msa1085230 | -0.817718 | 2.852283e-52 | -8.615850e-47 |
| Msa0716230 | Msa1204980 | 0.828024 | 1.131455e-54 | -8.615850e-47 |
| Msa0716230 | Msa1205010 | 0.821515 | 3.875992e-53 | -8.615850e-47 |
| Msa0716230 | Msa1256540 | 0.823831 | 1.120736e-53 | -8.615850e-47 |
| Msa0716230 | Msa1296960 | 0.824264 | 8.867981e-54 | -8.615850e-47 |
| Msa0716230 | Msa1347290 | -0.802648 | 5.077404e-49 | -8.615850e-47 |
| Msa0183380 | Msa0716230 | -0.806026 | 1.004515e-49 | -8.615850e-47 |
| Msa0185640 | Msa0716230 | 0.819467 | 1.143893e-52 | -8.615850e-47 |
| Msa0376770 | Msa0716230 | 0.844544 | 7.079669e-59 | -8.615850e-47 |
| Msa0465680 | Msa0716230 | 0.830287 | 3.197344e-55 | -8.615850e-47 |
| Msa0342340 | Msa0716230 | 0.818872 | 1.562082e-52 | -8.615850e-47 |
| Msa0576990 | Msa0716230 | 0.807841 | 4.150794e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716230 | MtrunA17_Chr5g0403631 | 98.762 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 0.0 | 650 |
| Msa0716230 | MtrunA17_Chr3g0141401 | 54.242 | 330 | 119 | 8 | 2 | 323 | 8 | 313 | 1.28e-80 | 247 |
| Msa0716230 | MtrunA17_Chr1g0154651 | 37.855 | 317 | 112 | 8 | 9 | 323 | 14 | 247 | 2.95e-49 | 164 |
| Msa0716230 | MtrunA17_Chr2g0315211 | 43.305 | 351 | 133 | 12 | 6 | 322 | 3 | 321 | 1.19e-36 | 134 |
| Msa0716230 | MtrunA17_Chr2g0315201 | 42.197 | 346 | 137 | 12 | 6 | 322 | 3 | 314 | 2.54e-34 | 127 |
| Msa0716230 | MtrunA17_Chr5g0408851 | 60.714 | 56 | 22 | 0 | 20 | 75 | 61 | 116 | 1.66e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716230 | AT1G75080.2 | 54.438 | 338 | 105 | 12 | 9 | 323 | 23 | 334 | 2.00e-93 | 281 |
| Msa0716230 | AT1G75080.1 | 54.438 | 338 | 105 | 12 | 9 | 323 | 23 | 334 | 2.00e-93 | 281 |
| Msa0716230 | AT1G19350.3 | 54.438 | 338 | 105 | 12 | 9 | 323 | 44 | 355 | 1.14e-91 | 277 |
| Msa0716230 | AT1G19350.5 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.28e-91 | 276 |
| Msa0716230 | AT1G19350.1 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.28e-91 | 276 |
| Msa0716230 | AT1G19350.6 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.28e-91 | 276 |
| Msa0716230 | AT1G19350.4 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.28e-91 | 276 |
| Msa0716230 | AT3G50750.1 | 51.863 | 322 | 95 | 8 | 2 | 319 | 4 | 269 | 1.35e-76 | 236 |
| Msa0716230 | AT4G36780.1 | 71.859 | 199 | 49 | 5 | 9 | 203 | 16 | 211 | 1.73e-61 | 197 |
| Msa0716230 | AT1G78700.1 | 41.193 | 352 | 135 | 13 | 6 | 319 | 3 | 320 | 1.55e-44 | 155 |
| Msa0716230 | AT4G18890.1 | 40.625 | 320 | 141 | 11 | 6 | 319 | 3 | 279 | 1.01e-32 | 123 |
| Msa0716230 | AT2G45880.1 | 38.686 | 137 | 75 | 3 | 3 | 136 | 63 | 193 | 7.39e-15 | 75.9 |
| Msa0716230 | AT5G45300.3 | 52.113 | 71 | 31 | 1 | 20 | 90 | 111 | 178 | 3.60e-14 | 73.6 |
| Msa0716230 | AT5G45300.1 | 52.113 | 71 | 31 | 1 | 20 | 90 | 97 | 164 | 3.70e-14 | 73.6 |
| Msa0716230 | AT5G45300.2 | 55.932 | 59 | 26 | 0 | 20 | 78 | 97 | 155 | 1.38e-13 | 72.0 |
Find 138 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGCAATAACACCCAATT+TGG | 0.187555 | 5_1:-9655153 | None:intergenic |
| GATTCAGTTGTTTGCTATAA+TGG | 0.236232 | 5_1:+9655505 | Msa0716230:three_prime_UTR |
| ATTGCTGCTAAGATCTATTC+AGG | 0.302180 | 5_1:+9653333 | Msa0716230:CDS |
| TGGGGAGTGATCTGCATTGC+TGG | 0.307829 | 5_1:-9654790 | None:intergenic |
| ATTCAGTTGTTTGCTATAAT+GGG | 0.317805 | 5_1:+9655506 | Msa0716230:three_prime_UTR |
| CAATAATGCAGTAACTTATA+TGG | 0.320990 | 5_1:-9655466 | None:intergenic |
| GAAGAAAGAGGTGGCGTAAC+AGG | 0.321873 | 5_1:-9654514 | None:intergenic |
| GCATCTGACTCATCGCATTC+TGG | 0.328895 | 5_1:-9654676 | None:intergenic |
| TAGTCAGGGAAATTCCAAAT+TGG | 0.334193 | 5_1:+9655139 | Msa0716230:three_prime_UTR |
| GAAGAAAGGAGGAAAATAGT+AGG | 0.340504 | 5_1:+9655582 | Msa0716230:three_prime_UTR |
| GGAGTTCCTCCCATTTCATT+TGG | 0.346161 | 5_1:-9654271 | None:intergenic |
| GTGGCGAAACGTGGAGTTAA+AGG | 0.352130 | 5_1:-9654587 | None:intergenic |
| GAGACCATTACCAAATGAAA+TGG | 0.372705 | 5_1:+9654261 | Msa0716230:CDS |
| ATAAGATAGAAGAATGATAA+TGG | 0.377666 | 5_1:+9655697 | Msa0716230:three_prime_UTR |
| TCATTATTATCACAGTGTTT+AGG | 0.379828 | 5_1:-9653384 | None:intergenic |
| GAACAAGCACTCATATTTGT+TGG | 0.400165 | 5_1:-9654292 | None:intergenic |
| CCTCCCATTTCATTTGGTAA+TGG | 0.409966 | 5_1:-9654265 | None:intergenic |
| GTCAAAATGTCATCAATAAG+AGG | 0.412824 | 5_1:-9655324 | None:intergenic |
| CTGCTACTTCTGCATTAGTC+AGG | 0.419516 | 5_1:+9655124 | Msa0716230:three_prime_UTR |
| CACCTTGTTACCCTTGGTCT+TGG | 0.424789 | 5_1:-9655290 | None:intergenic |
| AGTCAGGGAAATTCCAAATT+GGG | 0.427834 | 5_1:+9655140 | Msa0716230:three_prime_UTR |
| TCCACCGCCGGTCATCGTTC+CGG | 0.428343 | 5_1:-9653241 | None:intergenic |
| AACGAAGAAGACTGTGGACT+TGG | 0.429225 | 5_1:-9654349 | None:intergenic |
| TTGGAGCTTACTCTAGGGTT+TGG | 0.429948 | 5_1:+9654967 | Msa0716230:CDS |
| CTCTTTGTTCTGAAGCTGGT+TGG | 0.433313 | 5_1:+9653418 | Msa0716230:CDS |
| TTTAGAACACAAACTTAAGT+TGG | 0.435032 | 5_1:-9655011 | None:intergenic |
| CTAAGGGGTGGAAGATTTGT+TGG | 0.437346 | 5_1:-9654475 | None:intergenic |
| TTACGTCGCGAAGGGCTTGA+TGG | 0.441756 | 5_1:-9654631 | None:intergenic |
| ATGACCGGCGGTGGATCCTC+CGG | 0.444774 | 5_1:+9653249 | Msa0716230:CDS |
| AAAGCTCTTTGTTCTGAAGC+TGG | 0.450319 | 5_1:+9653414 | Msa0716230:CDS |
| GTTTCATAAGATTAAAAGTA+GGG | 0.465742 | 5_1:-9654768 | None:intergenic |
| GAGAATTCATGAGGTAGGAA+TGG | 0.471286 | 5_1:+9654939 | Msa0716230:CDS |
| GAATGGTAGGAGAAAGGAAG+AGG | 0.471644 | 5_1:-9654431 | None:intergenic |
| TATCATATCCATCGAACTCT+GGG | 0.473078 | 5_1:-9654809 | None:intergenic |
| CTCGTAGGGTATGATGGTAT+TGG | 0.473170 | 5_1:-9654379 | None:intergenic |
| TGGTGCAGAGGTAGCGAAAA+GGG | 0.473562 | 5_1:-9654611 | None:intergenic |
| GGTGAGAGAATTCATGAGGT+AGG | 0.475725 | 5_1:+9654934 | Msa0716230:CDS |
| GGAAGGAGGAGCTGCACCAT+GGG | 0.477201 | 5_1:-9654746 | None:intergenic |
| CTCTTCGCCGGAACGATGAC+CGG | 0.477263 | 5_1:+9653234 | Msa0716230:exon |
| AAACTAGGAGAGTGTGAAAA+GGG | 0.481245 | 5_1:+9653059 | Msa0716230:five_prime_UTR |
| CAACAAATCTTCCACCCCTT+AGG | 0.481611 | 5_1:+9654476 | Msa0716230:CDS |
| TAAGGGGTGGAAGATTTGTT+GGG | 0.482571 | 5_1:-9654474 | None:intergenic |
| GTATCATATCCATCGAACTC+TGG | 0.483186 | 5_1:-9654810 | None:intergenic |
| GAAGAGTTGGAGCTTACTCT+AGG | 0.484349 | 5_1:+9654961 | Msa0716230:CDS |
| CAATATCACCTTGTTACCCT+TGG | 0.484481 | 5_1:-9655296 | None:intergenic |
| AATGAGGAAGATTGTGGACT+TGG | 0.485039 | 5_1:-9654325 | None:intergenic |
| AAGAAAGGAGGAAAATAGTA+GGG | 0.485257 | 5_1:+9655583 | Msa0716230:three_prime_UTR |
| ATTGTTAGAGTCACGAGAAA+AGG | 0.485779 | 5_1:-9653177 | None:intergenic |
| CGCATTCTGGAATGGTGGAA+GGG | 0.492428 | 5_1:-9654663 | None:intergenic |
| CGATGAGTCAGATGCTTCTA+CGG | 0.496132 | 5_1:+9654684 | Msa0716230:CDS |
| AAAACTAGGAGAGTGTGAAA+AGG | 0.497607 | 5_1:+9653058 | Msa0716230:five_prime_UTR |
| GCCGGAACGATGACCGGCGG+TGG | 0.500980 | 5_1:+9653240 | Msa0716230:exon |
| GGGTATGATGGTATTGGACT+CGG | 0.506930 | 5_1:-9654373 | None:intergenic |
| TCAGCTACTGAGAGAGGTAG+AGG | 0.507163 | 5_1:+9654865 | Msa0716230:CDS |
| GAGCACTGTTGGAAATCCTA+AGG | 0.507516 | 5_1:-9654492 | None:intergenic |
| GAACTTCTCGGAGAAGAAAG+AGG | 0.507602 | 5_1:-9654526 | None:intergenic |
| GTTAAAGGAAGCATTACAAA+GGG | 0.511164 | 5_1:-9654572 | None:intergenic |
| TGTTTGGAATGAGAGAAGAA+AGG | 0.513727 | 5_1:+9655568 | Msa0716230:three_prime_UTR |
| GAAGTTATGTTGCGGATGAA+TGG | 0.514169 | 5_1:-9654448 | None:intergenic |
| AGACCATTACCAAATGAAAT+GGG | 0.515078 | 5_1:+9654262 | Msa0716230:CDS |
| AATGGTAGGAGAAAGGAAGA+GGG | 0.515787 | 5_1:-9654430 | None:intergenic |
| GAAGCCATGCAATGGAGTGC+AGG | 0.519451 | 5_1:+9654841 | Msa0716230:CDS |
| TTTCCATGTTGGTAATCTCC+CGG | 0.520653 | 5_1:-9653268 | None:intergenic |
| CTTCTACGGTGGACTCTGGT+AGG | 0.522842 | 5_1:+9654698 | Msa0716230:CDS |
| GCGGATGAATGGTAGGAGAA+AGG | 0.522930 | 5_1:-9654437 | None:intergenic |
| GGGTGAGTTAGGACATTGCT+CGG | 0.523072 | 5_1:+9655099 | Msa0716230:three_prime_UTR |
| ATGGTGCAGAGGTAGCGAAA+AGG | 0.528695 | 5_1:-9654612 | None:intergenic |
| TGAGGTAGGAATGGAAGAGT+TGG | 0.534793 | 5_1:+9654948 | Msa0716230:CDS |
| TGACCGGCGGTGGATCCTCC+GGG | 0.535108 | 5_1:+9653250 | Msa0716230:CDS |
| GGTAAGTGGTTACGTCGCGA+AGG | 0.535768 | 5_1:-9654640 | None:intergenic |
| TGACTCATCGCATTCTGGAA+TGG | 0.535852 | 5_1:-9654671 | None:intergenic |
| GTTGGACTCGTAGGGTATGA+TGG | 0.536021 | 5_1:-9654385 | None:intergenic |
| TCGCATTCTGGAATGGTGGA+AGG | 0.536086 | 5_1:-9654664 | None:intergenic |
| GGTTGGATCGTTGAAGAAGA+TGG | 0.537404 | 5_1:+9653435 | Msa0716230:CDS |
| AGACTGTGGACTTGGGAATG+AGG | 0.539676 | 5_1:-9654341 | None:intergenic |
| GCATTCTGGAATGGTGGAAG+GGG | 0.540873 | 5_1:-9654662 | None:intergenic |
| CCTAACTCACCCAGAAAACC+AGG | 0.544997 | 5_1:-9655088 | None:intergenic |
| GCTTACTCTAGGGTTTGGTA+AGG | 0.545192 | 5_1:+9654972 | Msa0716230:CDS |
| CTACGGTGGACTCTGGTAGG+TGG | 0.546694 | 5_1:+9654701 | Msa0716230:CDS |
| ATAAGATTAAAAGTAGGGGA+AGG | 0.548784 | 5_1:-9654763 | None:intergenic |
| TGGCGTAACAGGAGCACTGT+TGG | 0.550863 | 5_1:-9654503 | None:intergenic |
| ACGAGTCCAACTCGCATGGA+TGG | 0.553802 | 5_1:+9654397 | Msa0716230:CDS |
| ATGGCAGAGTCGTGAAGCCG+TGG | 0.556658 | 5_1:+9654908 | Msa0716230:CDS |
| TACGGTGGACTCTGGTAGGT+GGG | 0.563236 | 5_1:+9654702 | Msa0716230:CDS |
| GGTTTCATAAGATTAAAAGT+AGG | 0.565689 | 5_1:-9654769 | None:intergenic |
| AAGAGTTGGAGCTTACTCTA+GGG | 0.569146 | 5_1:+9654962 | Msa0716230:CDS |
| GGGAAGGAGGAGCTGCACCA+TGG | 0.569302 | 5_1:-9654747 | None:intergenic |
| TATTCAGGTTTACGAGCTCA+AGG | 0.569731 | 5_1:+9653348 | Msa0716230:CDS |
| TAATTAAGGAAGTGAAAACT+AGG | 0.570052 | 5_1:+9653044 | None:intergenic |
| TGAATTCTCTCACCTTCCCA+CGG | 0.573723 | 5_1:-9654925 | None:intergenic |
| TTGGAATGAGAGAAGAAAGG+AGG | 0.575997 | 5_1:+9655571 | Msa0716230:three_prime_UTR |
| GATCACTCCCCAGAGTTCGA+TGG | 0.577805 | 5_1:+9654801 | Msa0716230:CDS |
| CCCTACGAGTCCAACTCGCA+TGG | 0.578171 | 5_1:+9654393 | Msa0716230:CDS |
| TTATGTTGCGGATGAATGGT+AGG | 0.578326 | 5_1:-9654444 | None:intergenic |
| GATGCTTCTACGGTGGACTC+TGG | 0.578522 | 5_1:+9654694 | Msa0716230:CDS |
| GTAAGTGGTTACGTCGCGAA+GGG | 0.578993 | 5_1:-9654639 | None:intergenic |
| AGAGTCGTGAAGCCGTGGGA+AGG | 0.580925 | 5_1:+9654913 | Msa0716230:CDS |
| GTAATTCCATCCATGCGAGT+TGG | 0.581360 | 5_1:-9654403 | None:intergenic |
| ACGAAGAAGACTGTGGACTT+GGG | 0.581874 | 5_1:-9654348 | None:intergenic |
| CTCATCGCATTCTGGAATGG+TGG | 0.583351 | 5_1:-9654668 | None:intergenic |
| AGATTAAAAGTAGGGGAAGG+AGG | 0.584415 | 5_1:-9654760 | None:intergenic |
| AGCACTGTTGGAAATCCTAA+GGG | 0.585276 | 5_1:-9654491 | None:intergenic |
| CCTCCGGGAGATTACCAACA+TGG | 0.594081 | 5_1:+9653265 | Msa0716230:CDS |
| GGTATGATGGTATTGGACTC+GGG | 0.595404 | 5_1:-9654372 | None:intergenic |
| TCCATGCGAGTTGGACTCGT+AGG | 0.595405 | 5_1:-9654394 | None:intergenic |
| GAATGAATGAAGCCATGCAA+TGG | 0.596791 | 5_1:+9654833 | Msa0716230:CDS |
| TGCTACTTCTGCATTAGTCA+GGG | 0.598452 | 5_1:+9655125 | Msa0716230:three_prime_UTR |
| TTTCAGACAACAACTGCCCA+TGG | 0.605613 | 5_1:+9654730 | Msa0716230:CDS |
| TGAACCTGCACTCCATTGCA+TGG | 0.609662 | 5_1:-9654845 | None:intergenic |
| TACCAAGACCAAGGGTAACA+AGG | 0.610250 | 5_1:+9655288 | Msa0716230:three_prime_UTR |
| TAGTGTAATGAATTATCAAG+AGG | 0.611418 | 5_1:-9655356 | None:intergenic |
| ATGGTAGGAGAAAGGAAGAG+GGG | 0.614566 | 5_1:-9654429 | None:intergenic |
| CCATGCGAGTTGGACTCGTA+GGG | 0.617530 | 5_1:-9654393 | None:intergenic |
| GTGCAGAGGTAGCGAAAAGG+GGG | 0.619204 | 5_1:-9654609 | None:intergenic |
| CTTGGGAATGAGGAAGATTG+TGG | 0.619428 | 5_1:-9654331 | None:intergenic |
| TACTCAATTTACAAACACAA+AGG | 0.622892 | 5_1:-9655736 | None:intergenic |
| TTGAATCTTACCAAGACCAA+GGG | 0.624750 | 5_1:+9655280 | Msa0716230:three_prime_UTR |
| GCAGGTTCAGCTACTGAGAG+AGG | 0.625141 | 5_1:+9654859 | Msa0716230:CDS |
| CATTCTGGAATGGTGGAAGG+GGG | 0.627664 | 5_1:-9654661 | None:intergenic |
| AGATGGTACTACTTATCGAA+AGG | 0.630271 | 5_1:+9653452 | Msa0716230:CDS |
| TTGGGATTGAAGTTATGTTG+CGG | 0.631769 | 5_1:-9654456 | None:intergenic |
| AGTTAAAGGAAGCATTACAA+AGG | 0.631880 | 5_1:-9654573 | None:intergenic |
| TTTGAATCTTACCAAGACCA+AGG | 0.633389 | 5_1:+9655279 | Msa0716230:three_prime_UTR |
| GGTGCAGAGGTAGCGAAAAG+GGG | 0.633761 | 5_1:-9654610 | None:intergenic |
| CTGTTGGAAATCCTAAGGGG+TGG | 0.634143 | 5_1:-9654487 | None:intergenic |
| TGAGTCAGATGCTTCTACGG+TGG | 0.636061 | 5_1:+9654687 | Msa0716230:CDS |
| CGAAGGGCTTGATGGTGCAG+AGG | 0.637998 | 5_1:-9654623 | None:intergenic |
| TTTCATAAGATTAAAAGTAG+GGG | 0.644722 | 5_1:-9654767 | None:intergenic |
| TCTCCCGGAGGATCCACCGC+CGG | 0.650116 | 5_1:-9653253 | None:intergenic |
| TGGCAGAGTCGTGAAGCCGT+GGG | 0.659403 | 5_1:+9654909 | Msa0716230:CDS |
| TTCGCCGGAACGATGACCGG+CGG | 0.661466 | 5_1:+9653237 | Msa0716230:exon |
| CTCGGGAACGAAGAAGACTG+TGG | 0.666027 | 5_1:-9654355 | None:intergenic |
| CCATTACCAAATGAAATGGG+AGG | 0.683902 | 5_1:+9654265 | Msa0716230:CDS |
| GGAAGGTGAGAGAATTCATG+AGG | 0.688457 | 5_1:+9654930 | Msa0716230:CDS |
| CCATGTTGGTAATCTCCCGG+AGG | 0.694898 | 5_1:-9653265 | None:intergenic |
| GCACTGTTGGAAATCCTAAG+GGG | 0.712978 | 5_1:-9654490 | None:intergenic |
| CTTCTCGGAGAAGAAAGAGG+TGG | 0.713886 | 5_1:-9654523 | None:intergenic |
| ATCATATCCATCGAACTCTG+GGG | 0.718794 | 5_1:-9654808 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTCATAAAATTGATT+CGG | - | chr5_1:9653786-9653805 | None:intergenic | 10.0% |
| !!! | ATATATTGTATTTTTGACTT+TGG | + | chr5_1:9653640-9653659 | Msa0716230:intron | 15.0% |
| !!! | TTTTCCAATTTAATAGTTTA+TGG | - | chr5_1:9654138-9654157 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGCATATTTGAT+TGG | + | chr5_1:9655670-9655689 | Msa0716230:three_prime_UTR | 15.0% |
| !! | AAAGAAGAATCTACTAAAAA+AGG | + | chr5_1:9653091-9653110 | Msa0716230:five_prime_UTR | 20.0% |
| !! | AAATATTTGAGGAAAGTAAA+AGG | - | chr5_1:9653487-9653506 | None:intergenic | 20.0% |
| !! | TTGAAATTGAACGTTTAAAT+CGG | + | chr5_1:9653565-9653584 | Msa0716230:intron | 20.0% |
| !! | ATTTAATAGTTTATGGTGTT+TGG | - | chr5_1:9654131-9654150 | None:intergenic | 20.0% |
| !! | AACACCATAAACTATTAAAT+TGG | + | chr5_1:9654131-9654150 | Msa0716230:intron | 20.0% |
| !! | TTTCATAAGATTAAAAGTAG+GGG | - | chr5_1:9654770-9654789 | None:intergenic | 20.0% |
| !! | GTTTCATAAGATTAAAAGTA+GGG | - | chr5_1:9654771-9654790 | None:intergenic | 20.0% |
| !!! | ATTTTCTAAGTTTGCTTTAT+TGG | + | chr5_1:9655443-9655462 | Msa0716230:three_prime_UTR | 20.0% |
| !!! | TTCAATTTTGATTCTTTGTT+TGG | + | chr5_1:9655552-9655571 | Msa0716230:three_prime_UTR | 20.0% |
| !! | ATAAGATAGAAGAATGATAA+TGG | + | chr5_1:9655697-9655716 | Msa0716230:three_prime_UTR | 20.0% |
| ! | TCATTATTATCACAGTGTTT+AGG | - | chr5_1:9653387-9653406 | None:intergenic | 25.0% |
| ! | GCAAGTTAGTTAAATATTTG+AGG | - | chr5_1:9653498-9653517 | None:intergenic | 25.0% |
| !! | AGAATTGATTTAACTTCGAT+TGG | + | chr5_1:9653669-9653688 | Msa0716230:intron | 25.0% |
| !!! | TGTTTTAAGTCACATTAAGT+CGG | + | chr5_1:9653923-9653942 | Msa0716230:intron | 25.0% |
| ! | TGAGTAAATGAATTTGAATC+AGG | + | chr5_1:9654231-9654250 | Msa0716230:intron | 25.0% |
| ! | GAGTAAATGAATTTGAATCA+GGG | + | chr5_1:9654232-9654251 | Msa0716230:intron | 25.0% |
| ! | GGTTTCATAAGATTAAAAGT+AGG | - | chr5_1:9654772-9654791 | None:intergenic | 25.0% |
| !! | TTTAGAACACAAACTTAAGT+TGG | - | chr5_1:9655014-9655033 | None:intergenic | 25.0% |
| !!! | GAATCTGTAATTTTTTGGTA+CGG | - | chr5_1:9655044-9655063 | None:intergenic | 25.0% |
| !!! | CGATTGAATCTGTAATTTTT+TGG | - | chr5_1:9655049-9655068 | None:intergenic | 25.0% |
| ! | TATAAAAAGAACTGTACACA+AGG | - | chr5_1:9655183-9655202 | None:intergenic | 25.0% |
| !!! | TTACTTTTCAACAATCAACA+AGG | - | chr5_1:9655257-9655276 | None:intergenic | 25.0% |
| ! | TAGTGTAATGAATTATCAAG+AGG | - | chr5_1:9655359-9655378 | None:intergenic | 25.0% |
| !!! | TTTTTGTAGTGTGTTTGTTA+TGG | + | chr5_1:9655396-9655415 | Msa0716230:three_prime_UTR | 25.0% |
| ! | CAATAATGCAGTAACTTATA+TGG | - | chr5_1:9655469-9655488 | None:intergenic | 25.0% |
| !!! | ATTCAGTTGTTTGCTATAAT+GGG | + | chr5_1:9655506-9655525 | Msa0716230:three_prime_UTR | 25.0% |
| TTTAGTAGCTTATGTGTGTT+TGG | - | chr5_1:9653826-9653845 | None:intergenic | 30.0% | |
| ! | TCGAAATCAATTTTTGTCAG+AGG | + | chr5_1:9654101-9654120 | Msa0716230:intron | 30.0% |
| AGACCATTACCAAATGAAAT+GGG | + | chr5_1:9654262-9654281 | Msa0716230:CDS | 30.0% | |
| !! | GTTAAAGGAAGCATTACAAA+GGG | - | chr5_1:9654575-9654594 | None:intergenic | 30.0% |
| !! | AGTTAAAGGAAGCATTACAA+AGG | - | chr5_1:9654576-9654595 | None:intergenic | 30.0% |
| ATAAGATTAAAAGTAGGGGA+AGG | - | chr5_1:9654766-9654785 | None:intergenic | 30.0% | |
| !!! | TCAGATTTTGACTTTGAGAA+TGG | + | chr5_1:9654889-9654908 | Msa0716230:CDS | 30.0% |
| !!! | AAGTTGGTTTTATCATGATC+AGG | - | chr5_1:9654998-9655017 | None:intergenic | 30.0% |
| TATTGCAATAACACCCAATT+TGG | - | chr5_1:9655156-9655175 | None:intergenic | 30.0% | |
| ! | CAGTTCTTTTTATATAGCTG+TGG | + | chr5_1:9655189-9655208 | Msa0716230:three_prime_UTR | 30.0% |
| ! | TTTTATATAGCTGTGGTTAG+TGG | + | chr5_1:9655196-9655215 | Msa0716230:three_prime_UTR | 30.0% |
| GTCAAAATGTCATCAATAAG+AGG | - | chr5_1:9655327-9655346 | None:intergenic | 30.0% | |
| ACACACTACAAAAACTTAGT+TGG | - | chr5_1:9655390-9655409 | None:intergenic | 30.0% | |
| !! | GATTCAGTTGTTTGCTATAA+TGG | + | chr5_1:9655505-9655524 | Msa0716230:three_prime_UTR | 30.0% |
| AAGAAAGGAGGAAAATAGTA+GGG | + | chr5_1:9655583-9655602 | Msa0716230:three_prime_UTR | 30.0% | |
| ! | AAAACTAGGAGAGTGTGAAA+AGG | + | chr5_1:9653058-9653077 | Msa0716230:five_prime_UTR | 35.0% |
| ! | AAACTAGGAGAGTGTGAAAA+GGG | + | chr5_1:9653059-9653078 | Msa0716230:five_prime_UTR | 35.0% |
| ATTGTTAGAGTCACGAGAAA+AGG | - | chr5_1:9653180-9653199 | None:intergenic | 35.0% | |
| ! | TTTTCTCTCTCTTTCCATGT+TGG | - | chr5_1:9653282-9653301 | None:intergenic | 35.0% |
| ATTGCTGCTAAGATCTATTC+AGG | + | chr5_1:9653333-9653352 | Msa0716230:CDS | 35.0% | |
| AGATGGTACTACTTATCGAA+AGG | + | chr5_1:9653452-9653471 | Msa0716230:CDS | 35.0% | |
| ! | AATCGGTCTTGTAAGAAACT+TGG | + | chr5_1:9653582-9653601 | Msa0716230:intron | 35.0% |
| !!! | ACTTGGTTTTGTGATCTAAG+TGG | + | chr5_1:9653599-9653618 | Msa0716230:intron | 35.0% |
| GAGACCATTACCAAATGAAA+TGG | + | chr5_1:9654261-9654280 | Msa0716230:CDS | 35.0% | |
| GAACAAGCACTCATATTTGT+TGG | - | chr5_1:9654295-9654314 | None:intergenic | 35.0% | |
| TTGGGATTGAAGTTATGTTG+CGG | - | chr5_1:9654459-9654478 | None:intergenic | 35.0% | |
| TATCATATCCATCGAACTCT+GGG | - | chr5_1:9654812-9654831 | None:intergenic | 35.0% | |
| TAGTCAGGGAAATTCCAAAT+TGG | + | chr5_1:9655139-9655158 | Msa0716230:three_prime_UTR | 35.0% | |
| AGTCAGGGAAATTCCAAATT+GGG | + | chr5_1:9655140-9655159 | Msa0716230:three_prime_UTR | 35.0% | |
| TTTGAATCTTACCAAGACCA+AGG | + | chr5_1:9655279-9655298 | Msa0716230:three_prime_UTR | 35.0% | |
| TTGAATCTTACCAAGACCAA+GGG | + | chr5_1:9655280-9655299 | Msa0716230:three_prime_UTR | 35.0% | |
| ! | TGTTTGGAATGAGAGAAGAA+AGG | + | chr5_1:9655568-9655587 | Msa0716230:three_prime_UTR | 35.0% |
| GAAGAAAGGAGGAAAATAGT+AGG | + | chr5_1:9655582-9655601 | Msa0716230:three_prime_UTR | 35.0% | |
| !! | TTTCCATGTTGGTAATCTCC+CGG | - | chr5_1:9653271-9653290 | None:intergenic | 40.0% |
| ! | TATTCAGGTTTACGAGCTCA+AGG | + | chr5_1:9653348-9653367 | Msa0716230:CDS | 40.0% |
| !! | AAAGCTCTTTGTTCTGAAGC+TGG | + | chr5_1:9653414-9653433 | Msa0716230:CDS | 40.0% |
| ! | TTCATGTGCGTTTAGTTCAG+CGG | - | chr5_1:9653978-9653997 | None:intergenic | 40.0% |
| CCTCCCATTTCATTTGGTAA+TGG | - | chr5_1:9654268-9654287 | None:intergenic | 40.0% | |
| CCATTACCAAATGAAATGGG+AGG | + | chr5_1:9654265-9654284 | Msa0716230:CDS | 40.0% | |
| AATGAGGAAGATTGTGGACT+TGG | - | chr5_1:9654328-9654347 | None:intergenic | 40.0% | |
| AATGGTAGGAGAAAGGAAGA+GGG | - | chr5_1:9654433-9654452 | None:intergenic | 40.0% | |
| TTATGTTGCGGATGAATGGT+AGG | - | chr5_1:9654447-9654466 | None:intergenic | 40.0% | |
| GAAGTTATGTTGCGGATGAA+TGG | - | chr5_1:9654451-9654470 | None:intergenic | 40.0% | |
| ! | TAAGGGGTGGAAGATTTGTT+GGG | - | chr5_1:9654477-9654496 | None:intergenic | 40.0% |
| AGCACTGTTGGAAATCCTAA+GGG | - | chr5_1:9654494-9654513 | None:intergenic | 40.0% | |
| !! | GCTTTTCGCTTTGAACTTCT+CGG | - | chr5_1:9654541-9654560 | None:intergenic | 40.0% |
| AGATTAAAAGTAGGGGAAGG+AGG | - | chr5_1:9654763-9654782 | None:intergenic | 40.0% | |
| ATCATATCCATCGAACTCTG+GGG | - | chr5_1:9654811-9654830 | None:intergenic | 40.0% | |
| GTATCATATCCATCGAACTC+TGG | - | chr5_1:9654813-9654832 | None:intergenic | 40.0% | |
| GAATGAATGAAGCCATGCAA+TGG | + | chr5_1:9654833-9654852 | Msa0716230:CDS | 40.0% | |
| GAGAATTCATGAGGTAGGAA+TGG | + | chr5_1:9654939-9654958 | Msa0716230:CDS | 40.0% | |
| AAGAGTTGGAGCTTACTCTA+GGG | + | chr5_1:9654962-9654981 | Msa0716230:CDS | 40.0% | |
| ! | AATTCCTCAAAAAGTGTGCC+TGG | + | chr5_1:9655070-9655089 | Msa0716230:three_prime_UTR | 40.0% |
| !! | AAAACCAGGCACACTTTTTG+AGG | - | chr5_1:9655077-9655096 | None:intergenic | 40.0% |
| !! | AAAAAGTGTGCCTGGTTTTC+TGG | + | chr5_1:9655078-9655097 | Msa0716230:three_prime_UTR | 40.0% |
| !! | AAAAGTGTGCCTGGTTTTCT+GGG | + | chr5_1:9655079-9655098 | Msa0716230:three_prime_UTR | 40.0% |
| ! | TGCTACTTCTGCATTAGTCA+GGG | + | chr5_1:9655125-9655144 | Msa0716230:three_prime_UTR | 40.0% |
| CAATATCACCTTGTTACCCT+TGG | - | chr5_1:9655299-9655318 | None:intergenic | 40.0% | |
| TTGGAATGAGAGAAGAAAGG+AGG | + | chr5_1:9655571-9655590 | Msa0716230:three_prime_UTR | 40.0% | |
| !! | CTCTTTGTTCTGAAGCTGGT+TGG | + | chr5_1:9653418-9653437 | Msa0716230:CDS | 45.0% |
| GGTTGGATCGTTGAAGAAGA+TGG | + | chr5_1:9653435-9653454 | Msa0716230:CDS | 45.0% | |
| GGAGTTCCTCCCATTTCATT+TGG | - | chr5_1:9654274-9654293 | None:intergenic | 45.0% | |
| CTTGGGAATGAGGAAGATTG+TGG | - | chr5_1:9654334-9654353 | None:intergenic | 45.0% | |
| ACGAAGAAGACTGTGGACTT+GGG | - | chr5_1:9654351-9654370 | None:intergenic | 45.0% | |
| AACGAAGAAGACTGTGGACT+TGG | - | chr5_1:9654352-9654371 | None:intergenic | 45.0% | |
| ! | GGTATGATGGTATTGGACTC+GGG | - | chr5_1:9654375-9654394 | None:intergenic | 45.0% |
| ! | GGGTATGATGGTATTGGACT+CGG | - | chr5_1:9654376-9654395 | None:intergenic | 45.0% |
| CTCGTAGGGTATGATGGTAT+TGG | - | chr5_1:9654382-9654401 | None:intergenic | 45.0% | |
| GTAATTCCATCCATGCGAGT+TGG | - | chr5_1:9654406-9654425 | None:intergenic | 45.0% | |
| ATGGTAGGAGAAAGGAAGAG+GGG | - | chr5_1:9654432-9654451 | None:intergenic | 45.0% | |
| GAATGGTAGGAGAAAGGAAG+AGG | - | chr5_1:9654434-9654453 | None:intergenic | 45.0% | |
| CTAAGGGGTGGAAGATTTGT+TGG | - | chr5_1:9654478-9654497 | None:intergenic | 45.0% | |
| CAACAAATCTTCCACCCCTT+AGG | + | chr5_1:9654476-9654495 | Msa0716230:CDS | 45.0% | |
| GCACTGTTGGAAATCCTAAG+GGG | - | chr5_1:9654493-9654512 | None:intergenic | 45.0% | |
| ! | GAGCACTGTTGGAAATCCTA+AGG | - | chr5_1:9654495-9654514 | None:intergenic | 45.0% |
| GAACTTCTCGGAGAAGAAAG+AGG | - | chr5_1:9654529-9654548 | None:intergenic | 45.0% | |
| ! | TGACTCATCGCATTCTGGAA+TGG | - | chr5_1:9654674-9654693 | None:intergenic | 45.0% |
| CGATGAGTCAGATGCTTCTA+CGG | + | chr5_1:9654684-9654703 | Msa0716230:CDS | 45.0% | |
| TTTCAGACAACAACTGCCCA+TGG | + | chr5_1:9654730-9654749 | Msa0716230:CDS | 45.0% | |
| TGAATTCTCTCACCTTCCCA+CGG | - | chr5_1:9654928-9654947 | None:intergenic | 45.0% | |
| GGAAGGTGAGAGAATTCATG+AGG | + | chr5_1:9654930-9654949 | Msa0716230:CDS | 45.0% | |
| GGTGAGAGAATTCATGAGGT+AGG | + | chr5_1:9654934-9654953 | Msa0716230:CDS | 45.0% | |
| TGAGGTAGGAATGGAAGAGT+TGG | + | chr5_1:9654948-9654967 | Msa0716230:CDS | 45.0% | |
| GAAGAGTTGGAGCTTACTCT+AGG | + | chr5_1:9654961-9654980 | Msa0716230:CDS | 45.0% | |
| !! | TTGGAGCTTACTCTAGGGTT+TGG | + | chr5_1:9654967-9654986 | Msa0716230:CDS | 45.0% |
| !! | GCTTACTCTAGGGTTTGGTA+AGG | + | chr5_1:9654972-9654991 | Msa0716230:CDS | 45.0% |
| ! | CTGCTACTTCTGCATTAGTC+AGG | + | chr5_1:9655124-9655143 | Msa0716230:three_prime_UTR | 45.0% |
| TACCAAGACCAAGGGTAACA+AGG | + | chr5_1:9655288-9655307 | Msa0716230:three_prime_UTR | 45.0% | |
| AGACTGTGGACTTGGGAATG+AGG | - | chr5_1:9654344-9654363 | None:intergenic | 50.0% | |
| GTTGGACTCGTAGGGTATGA+TGG | - | chr5_1:9654388-9654407 | None:intergenic | 50.0% | |
| GCGGATGAATGGTAGGAGAA+AGG | - | chr5_1:9654440-9654459 | None:intergenic | 50.0% | |
| CTGTTGGAAATCCTAAGGGG+TGG | - | chr5_1:9654490-9654509 | None:intergenic | 50.0% | |
| GAAGAAAGAGGTGGCGTAAC+AGG | - | chr5_1:9654517-9654536 | None:intergenic | 50.0% | |
| CTTCTCGGAGAAGAAAGAGG+TGG | - | chr5_1:9654526-9654545 | None:intergenic | 50.0% | |
| GTGGCGAAACGTGGAGTTAA+AGG | - | chr5_1:9654590-9654609 | None:intergenic | 50.0% | |
| TGGTGCAGAGGTAGCGAAAA+GGG | - | chr5_1:9654614-9654633 | None:intergenic | 50.0% | |
| ATGGTGCAGAGGTAGCGAAA+AGG | - | chr5_1:9654615-9654634 | None:intergenic | 50.0% | |
| GTAAGTGGTTACGTCGCGAA+GGG | - | chr5_1:9654642-9654661 | None:intergenic | 50.0% | |
| !! | CATTCTGGAATGGTGGAAGG+GGG | - | chr5_1:9654664-9654683 | None:intergenic | 50.0% |
| !! | GCATTCTGGAATGGTGGAAG+GGG | - | chr5_1:9654665-9654684 | None:intergenic | 50.0% |
| !! | CGCATTCTGGAATGGTGGAA+GGG | - | chr5_1:9654666-9654685 | None:intergenic | 50.0% |
| !! | TCGCATTCTGGAATGGTGGA+AGG | - | chr5_1:9654667-9654686 | None:intergenic | 50.0% |
| !! | CTCATCGCATTCTGGAATGG+TGG | - | chr5_1:9654671-9654690 | None:intergenic | 50.0% |
| GCATCTGACTCATCGCATTC+TGG | - | chr5_1:9654679-9654698 | None:intergenic | 50.0% | |
| TGAGTCAGATGCTTCTACGG+TGG | + | chr5_1:9654687-9654706 | Msa0716230:CDS | 50.0% | |
| TGAACCTGCACTCCATTGCA+TGG | - | chr5_1:9654848-9654867 | None:intergenic | 50.0% | |
| TCAGCTACTGAGAGAGGTAG+AGG | + | chr5_1:9654865-9654884 | Msa0716230:CDS | 50.0% | |
| CCTAACTCACCCAGAAAACC+AGG | - | chr5_1:9655091-9655110 | None:intergenic | 50.0% | |
| !! | CCTGGTTTTCTGGGTGAGTT+AGG | + | chr5_1:9655088-9655107 | Msa0716230:three_prime_UTR | 50.0% |
| GGGTGAGTTAGGACATTGCT+CGG | + | chr5_1:9655099-9655118 | Msa0716230:three_prime_UTR | 50.0% | |
| CACCTTGTTACCCTTGGTCT+TGG | - | chr5_1:9655293-9655312 | None:intergenic | 50.0% | |
| CTCTCTCTCTCTCTCTTCGC+CGG | + | chr5_1:9653222-9653241 | Msa0716230:five_prime_UTR | 55.0% | |
| !! | CCATGTTGGTAATCTCCCGG+AGG | - | chr5_1:9653268-9653287 | None:intergenic | 55.0% |
| CCTCCGGGAGATTACCAACA+TGG | + | chr5_1:9653265-9653284 | Msa0716230:CDS | 55.0% | |
| CTCGGGAACGAAGAAGACTG+TGG | - | chr5_1:9654358-9654377 | None:intergenic | 55.0% | |
| ! | CCATGCGAGTTGGACTCGTA+GGG | - | chr5_1:9654396-9654415 | None:intergenic | 55.0% |
| ! | TCCATGCGAGTTGGACTCGT+AGG | - | chr5_1:9654397-9654416 | None:intergenic | 55.0% |
| ACGAGTCCAACTCGCATGGA+TGG | + | chr5_1:9654397-9654416 | Msa0716230:CDS | 55.0% | |
| !! | TGGCGTAACAGGAGCACTGT+TGG | - | chr5_1:9654506-9654525 | None:intergenic | 55.0% |
| GTGCAGAGGTAGCGAAAAGG+GGG | - | chr5_1:9654612-9654631 | None:intergenic | 55.0% | |
| GGTGCAGAGGTAGCGAAAAG+GGG | - | chr5_1:9654613-9654632 | None:intergenic | 55.0% | |
| TTACGTCGCGAAGGGCTTGA+TGG | - | chr5_1:9654634-9654653 | None:intergenic | 55.0% | |
| GGTAAGTGGTTACGTCGCGA+AGG | - | chr5_1:9654643-9654662 | None:intergenic | 55.0% | |
| ! | GAATGGTGGAAGGGGGTAAG+TGG | - | chr5_1:9654657-9654676 | None:intergenic | 55.0% |
| ! | GATGCTTCTACGGTGGACTC+TGG | + | chr5_1:9654694-9654713 | Msa0716230:CDS | 55.0% |
| ! | CTTCTACGGTGGACTCTGGT+AGG | + | chr5_1:9654698-9654717 | Msa0716230:CDS | 55.0% |
| ! | TACGGTGGACTCTGGTAGGT+GGG | + | chr5_1:9654702-9654721 | Msa0716230:CDS | 55.0% |
| TGGGGAGTGATCTGCATTGC+TGG | - | chr5_1:9654793-9654812 | None:intergenic | 55.0% | |
| GATCACTCCCCAGAGTTCGA+TGG | + | chr5_1:9654801-9654820 | Msa0716230:CDS | 55.0% | |
| GAAGCCATGCAATGGAGTGC+AGG | + | chr5_1:9654841-9654860 | Msa0716230:CDS | 55.0% | |
| GCAGGTTCAGCTACTGAGAG+AGG | + | chr5_1:9654859-9654878 | Msa0716230:CDS | 55.0% | |
| CTCTTCGCCGGAACGATGAC+CGG | + | chr5_1:9653234-9653253 | Msa0716230:exon | 60.0% | |
| CCCTACGAGTCCAACTCGCA+TGG | + | chr5_1:9654393-9654412 | Msa0716230:CDS | 60.0% | |
| GAAAAGGGGGTGGCGAAACG+TGG | - | chr5_1:9654599-9654618 | None:intergenic | 60.0% | |
| CAGAGGTAGCGAAAAGGGGG+TGG | - | chr5_1:9654609-9654628 | None:intergenic | 60.0% | |
| !! | CGAAGGGCTTGATGGTGCAG+AGG | - | chr5_1:9654626-9654645 | None:intergenic | 60.0% |
| ! | CTACGGTGGACTCTGGTAGG+TGG | + | chr5_1:9654701-9654720 | Msa0716230:CDS | 60.0% |
| GGAAGGAGGAGCTGCACCAT+GGG | - | chr5_1:9654749-9654768 | None:intergenic | 60.0% | |
| ATGGCAGAGTCGTGAAGCCG+TGG | + | chr5_1:9654908-9654927 | Msa0716230:CDS | 60.0% | |
| TGGCAGAGTCGTGAAGCCGT+GGG | + | chr5_1:9654909-9654928 | Msa0716230:CDS | 60.0% | |
| AGAGTCGTGAAGCCGTGGGA+AGG | + | chr5_1:9654913-9654932 | Msa0716230:CDS | 60.0% | |
| TTCGCCGGAACGATGACCGG+CGG | + | chr5_1:9653237-9653256 | Msa0716230:exon | 65.0% | |
| TCCACCGCCGGTCATCGTTC+CGG | - | chr5_1:9653244-9653263 | None:intergenic | 65.0% | |
| ATGACCGGCGGTGGATCCTC+CGG | + | chr5_1:9653249-9653268 | Msa0716230:CDS | 65.0% | |
| GGGAAGGAGGAGCTGCACCA+TGG | - | chr5_1:9654750-9654769 | None:intergenic | 65.0% | |
| TGACCGGCGGTGGATCCTCC+GGG | + | chr5_1:9653250-9653269 | Msa0716230:CDS | 70.0% | |
| TCTCCCGGAGGATCCACCGC+CGG | - | chr5_1:9653256-9653275 | None:intergenic | 70.0% | |
| GCCGGAACGATGACCGGCGG+TGG | + | chr5_1:9653240-9653259 | Msa0716230:exon | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 9653057 | 9655750 | 9653057 | ID=Msa0716230;Name=Msa0716230 |
| chr5_1 | mRNA | 9653057 | 9655750 | 9653057 | ID=Msa0716230-mRNA-1;Parent=Msa0716230;Name=Msa0716230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=192|1|1|1|1|1|2|751|323 |
| chr5_1 | exon | 9653057 | 9653473 | 9653057 | ID=Msa0716230-mRNA-1:exon:3834;Parent=Msa0716230-mRNA-1 |
| chr5_1 | exon | 9654253 | 9655750 | 9654253 | ID=Msa0716230-mRNA-1:exon:3835;Parent=Msa0716230-mRNA-1 |
| chr5_1 | five_prime_UTR | 9653057 | 9653248 | 9653057 | ID=Msa0716230-mRNA-1:five_prime_utr;Parent=Msa0716230-mRNA-1 |
| chr5_1 | CDS | 9653249 | 9653473 | 9653249 | ID=Msa0716230-mRNA-1:cds;Parent=Msa0716230-mRNA-1 |
| chr5_1 | CDS | 9654253 | 9654999 | 9654253 | ID=Msa0716230-mRNA-1:cds;Parent=Msa0716230-mRNA-1 |
| chr5_1 | three_prime_UTR | 9655000 | 9655750 | 9655000 | ID=Msa0716230-mRNA-1:three_prime_utr;Parent=Msa0716230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
