Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757540 | sp|Q94A43|BEH2_ARATH | 65.015 | 323 | 83 | 13 | 9 | 323 | 16 | 316 | 8.67e-101 | 301 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757540 | G7KC60 | 98.762 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 0.0 | 650 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0757540 | TF | BES1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa0757540 | -0.801554 | 8.524047e-49 | -8.615850e-47 |
| Msa0012780 | Msa0757540 | 0.805185 | 1.508384e-49 | -8.615850e-47 |
| Msa0020630 | Msa0757540 | -0.804797 | 1.818188e-49 | -8.615850e-47 |
| Msa0030030 | Msa0757540 | -0.803724 | 3.040557e-49 | -8.615850e-47 |
| Msa0038350 | Msa0757540 | 0.816045 | 6.770080e-52 | -8.615850e-47 |
| Msa0043240 | Msa0757540 | 0.806632 | 7.486688e-50 | -8.615850e-47 |
| Msa0053960 | Msa0757540 | -0.805546 | 1.267238e-49 | -8.615850e-47 |
| Msa0055280 | Msa0757540 | -0.813423 | 2.579562e-51 | -8.615850e-47 |
| Msa0091770 | Msa0757540 | -0.811998 | 5.289614e-51 | -8.615850e-47 |
| Msa0101060 | Msa0757540 | -0.802967 | 4.363958e-49 | -8.615850e-47 |
| Msa0106120 | Msa0757540 | 0.800748 | 1.246084e-48 | -8.615850e-47 |
| Msa0620640 | Msa0757540 | -0.812091 | 5.046086e-51 | -8.615850e-47 |
| Msa0621890 | Msa0757540 | -0.823355 | 1.448417e-53 | -8.615850e-47 |
| Msa0624730 | Msa0757540 | -0.802129 | 6.494335e-49 | -8.615850e-47 |
| Msa0633720 | Msa0757540 | -0.818509 | 1.888674e-52 | -8.615850e-47 |
| Msa0655660 | Msa0757540 | 0.808172 | 3.528881e-50 | -8.615850e-47 |
| Msa0660880 | Msa0757540 | 0.864078 | 1.574618e-64 | -8.615850e-47 |
| Msa0714600 | Msa0757540 | -0.813456 | 2.536901e-51 | -8.615850e-47 |
| Msa0716230 | Msa0757540 | 0.886164 | 4.339606e-72 | -8.615850e-47 |
| Msa0716740 | Msa0757540 | 0.844810 | 6.003823e-59 | -8.615850e-47 |
| Msa0723140 | Msa0757540 | -0.802437 | 5.613964e-49 | -8.615850e-47 |
| Msa0733140 | Msa0757540 | 0.804487 | 2.110006e-49 | -8.615850e-47 |
| Msa0733670 | Msa0757540 | 0.802366 | 5.804961e-49 | -8.615850e-47 |
| Msa0757540 | Msa0757990 | 0.842744 | 2.144447e-58 | -8.615850e-47 |
| Msa0757540 | Msa0792510 | -0.804032 | 2.624213e-49 | -8.615850e-47 |
| Msa0757540 | Msa0798830 | 0.913324 | 7.020535e-84 | -8.615850e-47 |
| Msa0757540 | Msa0799290 | 0.857311 | 1.779519e-62 | -8.615850e-47 |
| Msa0757540 | Msa0828570 | -0.822546 | 2.235432e-53 | -8.615850e-47 |
| Msa0757540 | Msa0837510 | 0.854309 | 1.341633e-61 | -8.615850e-47 |
| Msa0757540 | Msa0843280 | -0.806919 | 6.511297e-50 | -8.615850e-47 |
| Msa0757540 | Msa0861180 | 0.842577 | 2.375763e-58 | -8.615850e-47 |
| Msa0757540 | Msa0887000 | -0.805912 | 1.061381e-49 | -8.615850e-47 |
| Msa0757540 | Msa0903730 | -0.803293 | 3.735659e-49 | -8.615850e-47 |
| Msa0757540 | Msa0951720 | -0.806083 | 9.769970e-50 | -8.615850e-47 |
| Msa0757540 | Msa1011320 | 0.808996 | 2.352940e-50 | -8.615850e-47 |
| Msa0757540 | Msa1011350 | 0.819951 | 8.866180e-53 | -8.615850e-47 |
| Msa0757540 | Msa1032350 | -0.826840 | 2.174881e-54 | -8.615850e-47 |
| Msa0757540 | Msa1037060 | 0.833229 | 6.012580e-56 | -8.615850e-47 |
| Msa0757540 | Msa1040730 | 0.801027 | 1.092685e-48 | -8.615850e-47 |
| Msa0757540 | Msa1049950 | -0.802615 | 5.158877e-49 | -8.615850e-47 |
| Msa0757540 | Msa1118140 | -0.808081 | 3.689837e-50 | -8.615850e-47 |
| Msa0757540 | Msa1142850 | 0.804269 | 2.342679e-49 | -8.615850e-47 |
| Msa0757540 | Msa1143240 | 0.845583 | 3.709806e-59 | -8.615850e-47 |
| Msa0757540 | Msa1164800 | 0.830327 | 3.125664e-55 | -8.615850e-47 |
| Msa0757540 | Msa1204980 | 0.803191 | 3.921796e-49 | -8.615850e-47 |
| Msa0757540 | Msa1205010 | 0.801735 | 7.825776e-49 | -8.615850e-47 |
| Msa0757540 | Msa1220230 | -0.818559 | 1.840110e-52 | -8.615850e-47 |
| Msa0757540 | Msa1221200 | 0.810474 | 1.131980e-50 | -8.615850e-47 |
| Msa0757540 | Msa1221570 | 0.843865 | 1.077132e-58 | -8.615850e-47 |
| Msa0757540 | Msa1222030 | 0.821043 | 4.980934e-53 | -8.615850e-47 |
| Msa0757540 | Msa1226600 | -0.804022 | 2.636514e-49 | -8.615850e-47 |
| Msa0757540 | Msa1256540 | 0.800161 | 1.641231e-48 | -8.615850e-47 |
| Msa0757540 | Msa1265960 | -0.813619 | 2.335361e-51 | -8.615850e-47 |
| Msa0757540 | Msa1296960 | 0.803763 | 2.985108e-49 | -8.615850e-47 |
| Msa0757540 | Msa1317710 | -0.812675 | 3.762250e-51 | -8.615850e-47 |
| Msa0757540 | Msa1329990 | -0.813658 | 2.289733e-51 | -8.615850e-47 |
| Msa0757540 | Msa1335970 | 0.850646 | 1.484215e-60 | -8.615850e-47 |
| Msa0757540 | Msa1373950 | -0.804136 | 2.496869e-49 | -8.615850e-47 |
| Msa0757540 | Msa1400700 | 0.830857 | 2.318195e-55 | -8.615850e-47 |
| Msa0757540 | Msa1405470 | -0.805022 | 1.631653e-49 | -8.615850e-47 |
| Msa0757540 | Msa1428420 | -0.812127 | 4.956971e-51 | -8.615850e-47 |
| Msa0757540 | Msa1431000 | -0.813733 | 2.204660e-51 | -8.615850e-47 |
| Msa0757540 | Msa1460310 | 0.855598 | 5.665364e-62 | -8.615850e-47 |
| Msa0159750 | Msa0757540 | -0.803785 | 2.952841e-49 | -8.615850e-47 |
| Msa0181410 | Msa0757540 | -0.838505 | 2.763685e-57 | -8.615850e-47 |
| Msa0185640 | Msa0757540 | 0.802739 | 4.863319e-49 | -8.615850e-47 |
| Msa0371420 | Msa0757540 | 0.817726 | 2.839205e-52 | -8.615850e-47 |
| Msa0376770 | Msa0757540 | 0.806437 | 8.231501e-50 | -8.615850e-47 |
| Msa0377280 | Msa0757540 | -0.816661 | 4.929540e-52 | -8.615850e-47 |
| Msa0404690 | Msa0757540 | -0.806595 | 7.620784e-50 | -8.615850e-47 |
| Msa0413740 | Msa0757540 | -0.813285 | 2.765860e-51 | -8.615850e-47 |
| Msa0419620 | Msa0757540 | 0.801589 | 8.384894e-49 | -8.615850e-47 |
| Msa0423360 | Msa0757540 | 0.808691 | 2.734818e-50 | -8.615850e-47 |
| Msa0434890 | Msa0757540 | 0.812864 | 3.421291e-51 | -8.615850e-47 |
| Msa0458790 | Msa0757540 | -0.805797 | 1.122416e-49 | -8.615850e-47 |
| Msa0462590 | Msa0757540 | -0.800171 | 1.633505e-48 | -8.615850e-47 |
| Msa0258670 | Msa0757540 | 0.815413 | 9.364990e-52 | -8.615850e-47 |
| Msa0264940 | Msa0757540 | 0.855919 | 4.564840e-62 | -8.615850e-47 |
| Msa0265210 | Msa0757540 | -0.805962 | 1.036378e-49 | -8.615850e-47 |
| Msa0288240 | Msa0757540 | -0.801371 | 9.292829e-49 | -8.615850e-47 |
| Msa0288330 | Msa0757540 | -0.814146 | 1.787612e-51 | -8.615850e-47 |
| Msa0302990 | Msa0757540 | 0.855548 | 5.860319e-62 | -8.615850e-47 |
| Msa0303200 | Msa0757540 | -0.816869 | 4.427767e-52 | -8.615850e-47 |
| Msa0327860 | Msa0757540 | -0.805491 | 1.301366e-49 | -8.615850e-47 |
| Msa0335890 | Msa0757540 | 0.804536 | 2.060824e-49 | -8.615850e-47 |
| Msa0336270 | Msa0757540 | -0.809144 | 2.187335e-50 | -8.615850e-47 |
| Msa0351980 | Msa0757540 | -0.811275 | 7.595054e-51 | -8.615850e-47 |
| Msa0362430 | Msa0757540 | -0.802590 | 5.219095e-49 | -8.615850e-47 |
| Msa0505390 | Msa0757540 | -0.816430 | 5.551767e-52 | -8.615850e-47 |
| Msa0526640 | Msa0757540 | 0.800842 | 1.192112e-48 | -8.615850e-47 |
| Msa0574170 | Msa0757540 | -0.805389 | 1.366772e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757540 | MtrunA17_Chr5g0403631 | 98.762 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 0.0 | 650 |
| Msa0757540 | MtrunA17_Chr3g0141401 | 54.242 | 330 | 119 | 8 | 2 | 323 | 8 | 313 | 1.28e-80 | 247 |
| Msa0757540 | MtrunA17_Chr1g0154651 | 37.855 | 317 | 112 | 8 | 9 | 323 | 14 | 247 | 2.95e-49 | 164 |
| Msa0757540 | MtrunA17_Chr2g0315211 | 43.305 | 351 | 133 | 12 | 6 | 322 | 3 | 321 | 1.19e-36 | 134 |
| Msa0757540 | MtrunA17_Chr2g0315201 | 42.197 | 346 | 137 | 12 | 6 | 322 | 3 | 314 | 2.54e-34 | 127 |
| Msa0757540 | MtrunA17_Chr5g0408851 | 60.714 | 56 | 22 | 0 | 20 | 75 | 61 | 116 | 1.66e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757540 | AT1G75080.2 | 54.438 | 338 | 105 | 12 | 9 | 323 | 23 | 334 | 2.00e-93 | 281 |
| Msa0757540 | AT1G75080.1 | 54.438 | 338 | 105 | 12 | 9 | 323 | 23 | 334 | 2.00e-93 | 281 |
| Msa0757540 | AT1G19350.3 | 54.438 | 338 | 105 | 12 | 9 | 323 | 44 | 355 | 1.14e-91 | 277 |
| Msa0757540 | AT1G19350.5 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.28e-91 | 276 |
| Msa0757540 | AT1G19350.1 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.28e-91 | 276 |
| Msa0757540 | AT1G19350.6 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.28e-91 | 276 |
| Msa0757540 | AT1G19350.4 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.28e-91 | 276 |
| Msa0757540 | AT3G50750.1 | 51.863 | 322 | 95 | 8 | 2 | 319 | 4 | 269 | 1.35e-76 | 236 |
| Msa0757540 | AT4G36780.1 | 71.859 | 199 | 49 | 5 | 9 | 203 | 16 | 211 | 1.73e-61 | 197 |
| Msa0757540 | AT1G78700.1 | 41.193 | 352 | 135 | 13 | 6 | 319 | 3 | 320 | 1.55e-44 | 155 |
| Msa0757540 | AT4G18890.1 | 40.625 | 320 | 141 | 11 | 6 | 319 | 3 | 279 | 1.01e-32 | 123 |
| Msa0757540 | AT2G45880.1 | 38.686 | 137 | 75 | 3 | 3 | 136 | 63 | 193 | 7.39e-15 | 75.9 |
| Msa0757540 | AT5G45300.3 | 52.113 | 71 | 31 | 1 | 20 | 90 | 111 | 178 | 3.60e-14 | 73.6 |
| Msa0757540 | AT5G45300.1 | 52.113 | 71 | 31 | 1 | 20 | 90 | 97 | 164 | 3.70e-14 | 73.6 |
| Msa0757540 | AT5G45300.2 | 55.932 | 59 | 26 | 0 | 20 | 78 | 97 | 155 | 1.38e-13 | 72.0 |
Find 142 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGCAATAACACCCAATT+TGG | 0.187555 | 5_2:-12423986 | None:intergenic |
| GATTCAGTTGTTTGCTATAA+TGG | 0.236232 | 5_2:+12424349 | Msa0757540:three_prime_UTR |
| ATTGCTGCTAAGATCTATTC+AGG | 0.302180 | 5_2:+12422214 | Msa0757540:CDS |
| TGGGGAGTGATCTGCATTGC+TGG | 0.307829 | 5_2:-12423623 | None:intergenic |
| CAATACTGCAGTTACTTATA+TGG | 0.310930 | 5_2:-12424310 | None:intergenic |
| ATTCAGTTGTTTGCTATAAT+GGG | 0.317805 | 5_2:+12424350 | Msa0757540:three_prime_UTR |
| GAAGAAAGAGGTGGCGTAAC+AGG | 0.321873 | 5_2:-12423347 | None:intergenic |
| GCATCTGACTCATCGCATTC+TGG | 0.328895 | 5_2:-12423509 | None:intergenic |
| TAGTCAGGGAAATTCCAAAT+TGG | 0.334193 | 5_2:+12423972 | Msa0757540:three_prime_UTR |
| GGAGTTCCTCCCATTTCATT+TGG | 0.346161 | 5_2:-12423104 | None:intergenic |
| GTGGCGAAACGTGGAGTTAA+AGG | 0.352130 | 5_2:-12423420 | None:intergenic |
| TTTCTCCTTGTATATTTGAT+TGG | 0.357908 | 5_2:+12424505 | Msa0757540:three_prime_UTR |
| GAGACCATTACCAAATGAAA+TGG | 0.372705 | 5_2:+12423094 | Msa0757540:CDS |
| TTGGAGCTTACTCTAGGGTT+TGG | 0.376143 | 5_2:+12423800 | Msa0757540:CDS |
| TCATTATTATCACAGTGTTT+AGG | 0.379828 | 5_2:-12422265 | None:intergenic |
| GAACAAGCACTCATATTTGT+TGG | 0.400165 | 5_2:-12423125 | None:intergenic |
| CCTCCCATTTCATTTGGTAA+TGG | 0.409966 | 5_2:-12423098 | None:intergenic |
| GTCAAAATGTCATCAATAAG+AGG | 0.412824 | 5_2:-12424157 | None:intergenic |
| ATGAGATAGAAGAATGATAA+TGG | 0.416344 | 5_2:+12424532 | Msa0757540:three_prime_UTR |
| CTGCTACTTCTGCATTAGTC+AGG | 0.419516 | 5_2:+12423957 | Msa0757540:three_prime_UTR |
| CACCTTGTTACCCTTGGTCT+TGG | 0.424789 | 5_2:-12424123 | None:intergenic |
| AGTCAGGGAAATTCCAAATT+GGG | 0.427834 | 5_2:+12423973 | Msa0757540:three_prime_UTR |
| TCCACCGCCGGTCATCGTTC+CGG | 0.428343 | 5_2:-12422122 | None:intergenic |
| AACGAAGAAGACTGTGGACT+TGG | 0.429225 | 5_2:-12423182 | None:intergenic |
| CTCTTTGTTCTGAAGCTGGT+TGG | 0.433313 | 5_2:+12422299 | Msa0757540:CDS |
| TTTAGAACACAAACTTAAGT+TGG | 0.435032 | 5_2:-12423844 | None:intergenic |
| CTAAGGGGTGGAAGATTTGT+TGG | 0.437346 | 5_2:-12423308 | None:intergenic |
| TTACGTCGCGAAGGGCTTGA+TGG | 0.441756 | 5_2:-12423464 | None:intergenic |
| ATGACCGGCGGTGGATCCTC+CGG | 0.444774 | 5_2:+12422130 | Msa0757540:CDS |
| AAAGCTCTTTGTTCTGAAGC+TGG | 0.450319 | 5_2:+12422295 | Msa0757540:CDS |
| GTTTCATAAGATTAAAAGTA+GGG | 0.465742 | 5_2:-12423601 | None:intergenic |
| GAGAATTCATGAGGTAGGAA+TGG | 0.471286 | 5_2:+12423772 | Msa0757540:CDS |
| GAATGGTAGGAGAAAGGAAG+AGG | 0.471644 | 5_2:-12423264 | None:intergenic |
| CTCGTAGGGTATGATGGTAT+TGG | 0.473170 | 5_2:-12423212 | None:intergenic |
| TGGTGCAGAGGTAGCGAAAA+GGG | 0.473562 | 5_2:-12423444 | None:intergenic |
| GGTGAGAGAATTCATGAGGT+AGG | 0.475725 | 5_2:+12423767 | Msa0757540:CDS |
| GGAAGGAGGAGCTGCACCAT+GGG | 0.477201 | 5_2:-12423579 | None:intergenic |
| CTCTTCGCCGGAACGATGAC+CGG | 0.477263 | 5_2:+12422115 | Msa0757540:exon |
| AAACTAGGAGAGTGTGAAAA+GGG | 0.481245 | 5_2:+12421947 | Msa0757540:five_prime_UTR |
| CAACAAATCTTCCACCCCTT+AGG | 0.481611 | 5_2:+12423309 | Msa0757540:CDS |
| TAAGGGGTGGAAGATTTGTT+GGG | 0.482571 | 5_2:-12423307 | None:intergenic |
| GAAGAGTTGGAGCTTACTCT+AGG | 0.484349 | 5_2:+12423794 | Msa0757540:CDS |
| CAATATCACCTTGTTACCCT+TGG | 0.484481 | 5_2:-12424129 | None:intergenic |
| AATGAGGAAGATTGTGGACT+TGG | 0.485039 | 5_2:-12423158 | None:intergenic |
| GTATCATATCCATCGAACTC+TGG | 0.485353 | 5_2:-12423643 | None:intergenic |
| ATTGTTAGAGTCACGAGAAA+AGG | 0.485779 | 5_2:-12422066 | None:intergenic |
| TATCATATCCATCGAACTCT+GGG | 0.486116 | 5_2:-12423642 | None:intergenic |
| CGCATTCTGGAATGGTGGAA+GGG | 0.492428 | 5_2:-12423496 | None:intergenic |
| CGATGAGTCAGATGCTTCTA+CGG | 0.496132 | 5_2:+12423517 | Msa0757540:CDS |
| AAAACTAGGAGAGTGTGAAA+AGG | 0.497607 | 5_2:+12421946 | Msa0757540:five_prime_UTR |
| GCCGGAACGATGACCGGCGG+TGG | 0.500980 | 5_2:+12422121 | Msa0757540:exon |
| GGGTATGATGGTATTGGACT+CGG | 0.506930 | 5_2:-12423206 | None:intergenic |
| TCAGCTACTGAGAGAGGTAG+AGG | 0.507163 | 5_2:+12423698 | Msa0757540:CDS |
| GAGCACTGTTGGAAATCCTA+AGG | 0.507516 | 5_2:-12423325 | None:intergenic |
| GAACTTCTCGGAGAAGAAAG+AGG | 0.507602 | 5_2:-12423359 | None:intergenic |
| GTTAAAGGAAGCATTACAAA+GGG | 0.511164 | 5_2:-12423405 | None:intergenic |
| TGTTTGGAATGAGAGAAGAA+AGG | 0.513727 | 5_2:+12424412 | Msa0757540:three_prime_UTR |
| GAAGTTATGTTGCGGATGAA+TGG | 0.514169 | 5_2:-12423281 | None:intergenic |
| AGACCATTACCAAATGAAAT+GGG | 0.515078 | 5_2:+12423095 | Msa0757540:CDS |
| AATGGTAGGAGAAAGGAAGA+GGG | 0.515787 | 5_2:-12423263 | None:intergenic |
| TAGGAGAGTGTGAAAAGGGA+AGG | 0.519143 | 5_2:+12421951 | Msa0757540:five_prime_UTR |
| GAAGCCATGCAATGGAGTGC+AGG | 0.519451 | 5_2:+12423674 | Msa0757540:CDS |
| TTTCCATGTTGGTAATCTCC+CGG | 0.520653 | 5_2:-12422149 | None:intergenic |
| CCTATCTCACCCAGAAAACC+AGG | 0.522742 | 5_2:-12423921 | None:intergenic |
| CTTCTACGGTGGACTCTGGT+AGG | 0.522842 | 5_2:+12423531 | Msa0757540:CDS |
| GCGGATGAATGGTAGGAGAA+AGG | 0.522930 | 5_2:-12423270 | None:intergenic |
| ATGGTGCAGAGGTAGCGAAA+AGG | 0.528695 | 5_2:-12423445 | None:intergenic |
| TGAGGTAGGAATGGAAGAGT+TGG | 0.534793 | 5_2:+12423781 | Msa0757540:CDS |
| TGACCGGCGGTGGATCCTCC+GGG | 0.535108 | 5_2:+12422131 | Msa0757540:CDS |
| GGTAAGTGGTTACGTCGCGA+AGG | 0.535768 | 5_2:-12423473 | None:intergenic |
| TGACTCATCGCATTCTGGAA+TGG | 0.535852 | 5_2:-12423504 | None:intergenic |
| GTTGGACTCGTAGGGTATGA+TGG | 0.536021 | 5_2:-12423218 | None:intergenic |
| TCGCATTCTGGAATGGTGGA+AGG | 0.536086 | 5_2:-12423497 | None:intergenic |
| GGTTGGATCGTTGAAGAAGA+TGG | 0.537404 | 5_2:+12422316 | Msa0757540:CDS |
| AGACTGTGGACTTGGGAATG+AGG | 0.539676 | 5_2:-12423174 | None:intergenic |
| GCATTCTGGAATGGTGGAAG+GGG | 0.540873 | 5_2:-12423495 | None:intergenic |
| CTCTTGATAATTCATTACAC+TGG | 0.542614 | 5_2:+12424190 | Msa0757540:three_prime_UTR |
| CTACGGTGGACTCTGGTAGG+TGG | 0.546694 | 5_2:+12423534 | Msa0757540:CDS |
| ATAAGATTAAAAGTAGGGGA+AGG | 0.548784 | 5_2:-12423596 | None:intergenic |
| TGGCGTAACAGGAGCACTGT+TGG | 0.550863 | 5_2:-12423336 | None:intergenic |
| ACGAGTCCAACTCGCATGGA+TGG | 0.553802 | 5_2:+12423230 | Msa0757540:CDS |
| ATGGCAGAGTCGTGAAGCCG+TGG | 0.556658 | 5_2:+12423741 | Msa0757540:CDS |
| TACGGTGGACTCTGGTAGGT+GGG | 0.563236 | 5_2:+12423535 | Msa0757540:CDS |
| GGTTTCATAAGATTAAAAGT+AGG | 0.565689 | 5_2:-12423602 | None:intergenic |
| GGGTGAGATAGGACATTGCT+CGG | 0.565960 | 5_2:+12423932 | Msa0757540:three_prime_UTR |
| AAGAGTTGGAGCTTACTCTA+GGG | 0.569146 | 5_2:+12423795 | Msa0757540:CDS |
| GGGAAGGAGGAGCTGCACCA+TGG | 0.569302 | 5_2:-12423580 | None:intergenic |
| TATTCAGGTTTACGAGCTCA+AGG | 0.569731 | 5_2:+12422229 | Msa0757540:CDS |
| TAATTAAGGAAGTGAAAACT+AGG | 0.570052 | 5_2:+12421932 | None:intergenic |
| TGAATTCTCTCACCTTCCCA+CGG | 0.573723 | 5_2:-12423758 | None:intergenic |
| TTGGAATGAGAGAAGAAAGG+AGG | 0.575997 | 5_2:+12424415 | Msa0757540:three_prime_UTR |
| GATCACTCCCCAGAGTTCGA+TGG | 0.577805 | 5_2:+12423634 | Msa0757540:CDS |
| CCCTACGAGTCCAACTCGCA+TGG | 0.578171 | 5_2:+12423226 | Msa0757540:CDS |
| TTATGTTGCGGATGAATGGT+AGG | 0.578326 | 5_2:-12423277 | None:intergenic |
| TCTAAACTCTCTCTCTTCGC+CGG | 0.578398 | 5_2:+12422103 | Msa0757540:five_prime_UTR |
| GATGCTTCTACGGTGGACTC+TGG | 0.578522 | 5_2:+12423527 | Msa0757540:CDS |
| GTAAGTGGTTACGTCGCGAA+GGG | 0.578993 | 5_2:-12423472 | None:intergenic |
| AGAGTCGTGAAGCCGTGGGA+AGG | 0.580925 | 5_2:+12423746 | Msa0757540:CDS |
| GTAATTCCATCCATGCGAGT+TGG | 0.581360 | 5_2:-12423236 | None:intergenic |
| ACGAAGAAGACTGTGGACTT+GGG | 0.581874 | 5_2:-12423181 | None:intergenic |
| CTCATCGCATTCTGGAATGG+TGG | 0.583351 | 5_2:-12423501 | None:intergenic |
| AGATTAAAAGTAGGGGAAGG+AGG | 0.584415 | 5_2:-12423593 | None:intergenic |
| AGCACTGTTGGAAATCCTAA+GGG | 0.585276 | 5_2:-12423324 | None:intergenic |
| CCTCCGGGAGATTACCAACA+TGG | 0.594081 | 5_2:+12422146 | Msa0757540:CDS |
| GGTATGATGGTATTGGACTC+GGG | 0.595404 | 5_2:-12423205 | None:intergenic |
| TCCATGCGAGTTGGACTCGT+AGG | 0.595405 | 5_2:-12423227 | None:intergenic |
| TGCTACTTCTGCATTAGTCA+GGG | 0.598452 | 5_2:+12423958 | Msa0757540:three_prime_UTR |
| CAGTGTAATGAATTATCAAG+AGG | 0.605589 | 5_2:-12424189 | None:intergenic |
| TTTCAGACAACAACTGCCCA+TGG | 0.605613 | 5_2:+12423563 | Msa0757540:CDS |
| GTATGAATGAAGCCATGCAA+TGG | 0.607575 | 5_2:+12423666 | Msa0757540:CDS |
| TGAACCTGCACTCCATTGCA+TGG | 0.609662 | 5_2:-12423678 | None:intergenic |
| TACCAAGACCAAGGGTAACA+AGG | 0.610250 | 5_2:+12424121 | Msa0757540:three_prime_UTR |
| ATGGTAGGAGAAAGGAAGAG+GGG | 0.614566 | 5_2:-12423262 | None:intergenic |
| TCAAACCAATCAAATATACA+AGG | 0.617106 | 5_2:-12424510 | None:intergenic |
| CCATGCGAGTTGGACTCGTA+GGG | 0.617530 | 5_2:-12423226 | None:intergenic |
| GTGCAGAGGTAGCGAAAAGG+GGG | 0.619204 | 5_2:-12423442 | None:intergenic |
| CTTGGGAATGAGGAAGATTG+TGG | 0.619428 | 5_2:-12423164 | None:intergenic |
| TACTCAATTTACAAACACAA+AGG | 0.622892 | 5_2:-12424571 | None:intergenic |
| TTGAATCTTACCAAGACCAA+GGG | 0.624750 | 5_2:+12424113 | Msa0757540:three_prime_UTR |
| GCAGGTTCAGCTACTGAGAG+AGG | 0.625141 | 5_2:+12423692 | Msa0757540:CDS |
| CATTCTGGAATGGTGGAAGG+GGG | 0.627664 | 5_2:-12423494 | None:intergenic |
| AGATGGTACTACTTATCGAA+AGG | 0.630271 | 5_2:+12422333 | Msa0757540:CDS |
| TTGGGATTGAAGTTATGTTG+CGG | 0.631769 | 5_2:-12423289 | None:intergenic |
| AGTTAAAGGAAGCATTACAA+AGG | 0.631880 | 5_2:-12423406 | None:intergenic |
| TTTGAATCTTACCAAGACCA+AGG | 0.633389 | 5_2:+12424112 | Msa0757540:three_prime_UTR |
| GGTGCAGAGGTAGCGAAAAG+GGG | 0.633761 | 5_2:-12423443 | None:intergenic |
| CTGTTGGAAATCCTAAGGGG+TGG | 0.634143 | 5_2:-12423320 | None:intergenic |
| TGAGTCAGATGCTTCTACGG+TGG | 0.636061 | 5_2:+12423520 | Msa0757540:CDS |
| CGAAGGGCTTGATGGTGCAG+AGG | 0.637998 | 5_2:-12423456 | None:intergenic |
| GCTTACTCTAGGGTTTGGAA+AGG | 0.640157 | 5_2:+12423805 | Msa0757540:CDS |
| TTTCATAAGATTAAAAGTAG+GGG | 0.644722 | 5_2:-12423600 | None:intergenic |
| TCTCCCGGAGGATCCACCGC+CGG | 0.650116 | 5_2:-12422134 | None:intergenic |
| TGGCAGAGTCGTGAAGCCGT+GGG | 0.659403 | 5_2:+12423742 | Msa0757540:CDS |
| TTCGCCGGAACGATGACCGG+CGG | 0.661466 | 5_2:+12422118 | Msa0757540:exon |
| CTCGGGAACGAAGAAGACTG+TGG | 0.666027 | 5_2:-12423188 | None:intergenic |
| CCATTACCAAATGAAATGGG+AGG | 0.683902 | 5_2:+12423098 | Msa0757540:CDS |
| GGAAGGTGAGAGAATTCATG+AGG | 0.688457 | 5_2:+12423763 | Msa0757540:CDS |
| CCATGTTGGTAATCTCCCGG+AGG | 0.694898 | 5_2:-12422146 | None:intergenic |
| GCACTGTTGGAAATCCTAAG+GGG | 0.712978 | 5_2:-12423323 | None:intergenic |
| CTTCTCGGAGAAGAAAGAGG+TGG | 0.713886 | 5_2:-12423356 | None:intergenic |
| ATCATATCCATCGAACTCTG+GGG | 0.720256 | 5_2:-12423641 | None:intergenic |
| TTACTCTTCAACAATCAACA+AGG | 0.722255 | 5_2:-12424087 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTCATAAAATTGATT+CGG | - | chr5_2:12422660-12422679 | None:intergenic | 10.0% |
| !!! | TTTTCCAATTTAATAGTTTA+TGG | - | chr5_2:12422980-12422999 | None:intergenic | 15.0% |
| !! | AAAGAAGAATCTACTAAAAA+AGG | + | chr5_2:12421980-12421999 | Msa0757540:five_prime_UTR | 20.0% |
| !! | ATTTAATAGTTTATGGTGTT+TGG | - | chr5_2:12422973-12422992 | None:intergenic | 20.0% |
| !! | AACACCATAAACTATTAAAT+TGG | + | chr5_2:12422973-12422992 | Msa0757540:intron | 20.0% |
| !! | TTTCATAAGATTAAAAGTAG+GGG | - | chr5_2:12423603-12423622 | None:intergenic | 20.0% |
| !! | GTTTCATAAGATTAAAAGTA+GGG | - | chr5_2:12423604-12423623 | None:intergenic | 20.0% |
| !!! | ATTTTCTAAGTTTGCTTTAT+TGG | + | chr5_2:12424287-12424306 | Msa0757540:three_prime_UTR | 20.0% |
| !!! | TTCAATTTTGATTCTTTGTT+TGG | + | chr5_2:12424396-12424415 | Msa0757540:three_prime_UTR | 20.0% |
| ! | TCATTATTATCACAGTGTTT+AGG | - | chr5_2:12422268-12422287 | None:intergenic | 25.0% |
| ! | AAGCAAGTTAGTTAAAAAAG+TGG | - | chr5_2:12422372-12422391 | None:intergenic | 25.0% |
| ! | AATCGATCTTATAAGAAACT+TGG | + | chr5_2:12422454-12422473 | Msa0757540:intron | 25.0% |
| ! | AATCGAAGTTAAATCAATTC+TGG | - | chr5_2:12422561-12422580 | None:intergenic | 25.0% |
| !! | AGAATTGATTTAACTTCGAT+TGG | + | chr5_2:12422560-12422579 | Msa0757540:intron | 25.0% |
| ! | TGAGTAAATGAATTTGAATC+AGG | + | chr5_2:12423064-12423083 | Msa0757540:intron | 25.0% |
| ! | GAGTAAATGAATTTGAATCA+GGG | + | chr5_2:12423065-12423084 | Msa0757540:intron | 25.0% |
| ! | GGTTTCATAAGATTAAAAGT+AGG | - | chr5_2:12423605-12423624 | None:intergenic | 25.0% |
| !! | TTTAGAACACAAACTTAAGT+TGG | - | chr5_2:12423847-12423866 | None:intergenic | 25.0% |
| !!! | GAATCTGTAATTTTTTGGTA+CGG | - | chr5_2:12423877-12423896 | None:intergenic | 25.0% |
| !!! | CGATTGAATCTGTAATTTTT+TGG | - | chr5_2:12423882-12423901 | None:intergenic | 25.0% |
| !!! | CAGTTTTTTTTATATAGCTG+TGG | + | chr5_2:12424022-12424041 | Msa0757540:three_prime_UTR | 25.0% |
| !!! | TTTTTGTAGTGTGTTTGTTA+TGG | + | chr5_2:12424229-12424248 | Msa0757540:three_prime_UTR | 25.0% |
| !!! | ATTCAGTTGTTTGCTATAAT+GGG | + | chr5_2:12424350-12424369 | Msa0757540:three_prime_UTR | 25.0% |
| ! | TTTCTCCTTGTATATTTGAT+TGG | + | chr5_2:12424505-12424524 | Msa0757540:three_prime_UTR | 25.0% |
| ! | TCAAACCAATCAAATATACA+AGG | - | chr5_2:12424513-12424532 | None:intergenic | 25.0% |
| ! | ATGAGATAGAAGAATGATAA+TGG | + | chr5_2:12424532-12424551 | Msa0757540:three_prime_UTR | 25.0% |
| TTTAGTAGCTTATGTGTGTT+TGG | - | chr5_2:12422700-12422719 | None:intergenic | 30.0% | |
| CTGTTTAAGTCACATTAAGT+CGG | + | chr5_2:12422796-12422815 | Msa0757540:intron | 30.0% | |
| ! | TCGAAATCAATTTTTGTCAG+AGG | + | chr5_2:12422943-12422962 | Msa0757540:intron | 30.0% |
| AGACCATTACCAAATGAAAT+GGG | + | chr5_2:12423095-12423114 | Msa0757540:CDS | 30.0% | |
| !! | GTTAAAGGAAGCATTACAAA+GGG | - | chr5_2:12423408-12423427 | None:intergenic | 30.0% |
| !! | AGTTAAAGGAAGCATTACAA+AGG | - | chr5_2:12423409-12423428 | None:intergenic | 30.0% |
| ATAAGATTAAAAGTAGGGGA+AGG | - | chr5_2:12423599-12423618 | None:intergenic | 30.0% | |
| !!! | TCAGATTTTGACTTTGAGAA+TGG | + | chr5_2:12423722-12423741 | Msa0757540:CDS | 30.0% |
| !!! | AAGTTGGTTTTATCATGATC+AGG | - | chr5_2:12423831-12423850 | None:intergenic | 30.0% |
| TATTGCAATAACACCCAATT+TGG | - | chr5_2:12423989-12424008 | None:intergenic | 30.0% | |
| ! | TTTTATATAGCTGTGGTTAG+TGG | + | chr5_2:12424029-12424048 | Msa0757540:three_prime_UTR | 30.0% |
| TTACTCTTCAACAATCAACA+AGG | - | chr5_2:12424090-12424109 | None:intergenic | 30.0% | |
| GTCAAAATGTCATCAATAAG+AGG | - | chr5_2:12424160-12424179 | None:intergenic | 30.0% | |
| CAGTGTAATGAATTATCAAG+AGG | - | chr5_2:12424192-12424211 | None:intergenic | 30.0% | |
| ! | CTCTTGATAATTCATTACAC+TGG | + | chr5_2:12424190-12424209 | Msa0757540:three_prime_UTR | 30.0% |
| ACACACTACAAAAACTTAGT+TGG | - | chr5_2:12424223-12424242 | None:intergenic | 30.0% | |
| CAATACTGCAGTTACTTATA+TGG | - | chr5_2:12424313-12424332 | None:intergenic | 30.0% | |
| !! | GATTCAGTTGTTTGCTATAA+TGG | + | chr5_2:12424349-12424368 | Msa0757540:three_prime_UTR | 30.0% |
| ! | AAAACTAGGAGAGTGTGAAA+AGG | + | chr5_2:12421946-12421965 | Msa0757540:five_prime_UTR | 35.0% |
| ! | AAACTAGGAGAGTGTGAAAA+GGG | + | chr5_2:12421947-12421966 | Msa0757540:five_prime_UTR | 35.0% |
| ATTGTTAGAGTCACGAGAAA+AGG | - | chr5_2:12422069-12422088 | None:intergenic | 35.0% | |
| ! | TTTTCTCTCTCTTTCCATGT+TGG | - | chr5_2:12422163-12422182 | None:intergenic | 35.0% |
| ATTGCTGCTAAGATCTATTC+AGG | + | chr5_2:12422214-12422233 | Msa0757540:CDS | 35.0% | |
| AGATGGTACTACTTATCGAA+AGG | + | chr5_2:12422333-12422352 | Msa0757540:CDS | 35.0% | |
| !! | CTTGGTTTTTGTGATCTAAG+TGG | + | chr5_2:12422472-12422491 | Msa0757540:intron | 35.0% |
| GAGACCATTACCAAATGAAA+TGG | + | chr5_2:12423094-12423113 | Msa0757540:CDS | 35.0% | |
| GAACAAGCACTCATATTTGT+TGG | - | chr5_2:12423128-12423147 | None:intergenic | 35.0% | |
| TTGGGATTGAAGTTATGTTG+CGG | - | chr5_2:12423292-12423311 | None:intergenic | 35.0% | |
| TATCATATCCATCGAACTCT+GGG | - | chr5_2:12423645-12423664 | None:intergenic | 35.0% | |
| AATTCCTCAAAAAGTTTGCC+TGG | + | chr5_2:12423903-12423922 | Msa0757540:three_prime_UTR | 35.0% | |
| ! | AAAACCAGGCAAACTTTTTG+AGG | - | chr5_2:12423910-12423929 | None:intergenic | 35.0% |
| !! | AAAAAGTTTGCCTGGTTTTC+TGG | + | chr5_2:12423911-12423930 | Msa0757540:three_prime_UTR | 35.0% |
| !! | AAAAGTTTGCCTGGTTTTCT+GGG | + | chr5_2:12423912-12423931 | Msa0757540:three_prime_UTR | 35.0% |
| TAGTCAGGGAAATTCCAAAT+TGG | + | chr5_2:12423972-12423991 | Msa0757540:three_prime_UTR | 35.0% | |
| AGTCAGGGAAATTCCAAATT+GGG | + | chr5_2:12423973-12423992 | Msa0757540:three_prime_UTR | 35.0% | |
| TTTGAATCTTACCAAGACCA+AGG | + | chr5_2:12424112-12424131 | Msa0757540:three_prime_UTR | 35.0% | |
| TTGAATCTTACCAAGACCAA+GGG | + | chr5_2:12424113-12424132 | Msa0757540:three_prime_UTR | 35.0% | |
| ! | TGTTTGGAATGAGAGAAGAA+AGG | + | chr5_2:12424412-12424431 | Msa0757540:three_prime_UTR | 35.0% |
| !! | TTTCCATGTTGGTAATCTCC+CGG | - | chr5_2:12422152-12422171 | None:intergenic | 40.0% |
| ! | TATTCAGGTTTACGAGCTCA+AGG | + | chr5_2:12422229-12422248 | Msa0757540:CDS | 40.0% |
| !! | AAAGCTCTTTGTTCTGAAGC+TGG | + | chr5_2:12422295-12422314 | Msa0757540:CDS | 40.0% |
| ! | TTCATGTGCGTTTAGTTCAG+CGG | - | chr5_2:12422851-12422870 | None:intergenic | 40.0% |
| CCTCCCATTTCATTTGGTAA+TGG | - | chr5_2:12423101-12423120 | None:intergenic | 40.0% | |
| CCATTACCAAATGAAATGGG+AGG | + | chr5_2:12423098-12423117 | Msa0757540:CDS | 40.0% | |
| AATGAGGAAGATTGTGGACT+TGG | - | chr5_2:12423161-12423180 | None:intergenic | 40.0% | |
| AATGGTAGGAGAAAGGAAGA+GGG | - | chr5_2:12423266-12423285 | None:intergenic | 40.0% | |
| TTATGTTGCGGATGAATGGT+AGG | - | chr5_2:12423280-12423299 | None:intergenic | 40.0% | |
| GAAGTTATGTTGCGGATGAA+TGG | - | chr5_2:12423284-12423303 | None:intergenic | 40.0% | |
| ! | TAAGGGGTGGAAGATTTGTT+GGG | - | chr5_2:12423310-12423329 | None:intergenic | 40.0% |
| AGCACTGTTGGAAATCCTAA+GGG | - | chr5_2:12423327-12423346 | None:intergenic | 40.0% | |
| !! | GCTTTTCGCTTTGAACTTCT+CGG | - | chr5_2:12423374-12423393 | None:intergenic | 40.0% |
| AGATTAAAAGTAGGGGAAGG+AGG | - | chr5_2:12423596-12423615 | None:intergenic | 40.0% | |
| ATCATATCCATCGAACTCTG+GGG | - | chr5_2:12423644-12423663 | None:intergenic | 40.0% | |
| GTATCATATCCATCGAACTC+TGG | - | chr5_2:12423646-12423665 | None:intergenic | 40.0% | |
| GTATGAATGAAGCCATGCAA+TGG | + | chr5_2:12423666-12423685 | Msa0757540:CDS | 40.0% | |
| GAGAATTCATGAGGTAGGAA+TGG | + | chr5_2:12423772-12423791 | Msa0757540:CDS | 40.0% | |
| AAGAGTTGGAGCTTACTCTA+GGG | + | chr5_2:12423795-12423814 | Msa0757540:CDS | 40.0% | |
| ! | TGCTACTTCTGCATTAGTCA+GGG | + | chr5_2:12423958-12423977 | Msa0757540:three_prime_UTR | 40.0% |
| CAATATCACCTTGTTACCCT+TGG | - | chr5_2:12424132-12424151 | None:intergenic | 40.0% | |
| TTGGAATGAGAGAAGAAAGG+AGG | + | chr5_2:12424415-12424434 | Msa0757540:three_prime_UTR | 40.0% | |
| ! | TAGGAGAGTGTGAAAAGGGA+AGG | + | chr5_2:12421951-12421970 | Msa0757540:five_prime_UTR | 45.0% |
| TCTAAACTCTCTCTCTTCGC+CGG | + | chr5_2:12422103-12422122 | Msa0757540:five_prime_UTR | 45.0% | |
| !! | CTCTTTGTTCTGAAGCTGGT+TGG | + | chr5_2:12422299-12422318 | Msa0757540:CDS | 45.0% |
| GGTTGGATCGTTGAAGAAGA+TGG | + | chr5_2:12422316-12422335 | Msa0757540:CDS | 45.0% | |
| GGAGTTCCTCCCATTTCATT+TGG | - | chr5_2:12423107-12423126 | None:intergenic | 45.0% | |
| CTTGGGAATGAGGAAGATTG+TGG | - | chr5_2:12423167-12423186 | None:intergenic | 45.0% | |
| ACGAAGAAGACTGTGGACTT+GGG | - | chr5_2:12423184-12423203 | None:intergenic | 45.0% | |
| AACGAAGAAGACTGTGGACT+TGG | - | chr5_2:12423185-12423204 | None:intergenic | 45.0% | |
| ! | GGTATGATGGTATTGGACTC+GGG | - | chr5_2:12423208-12423227 | None:intergenic | 45.0% |
| ! | GGGTATGATGGTATTGGACT+CGG | - | chr5_2:12423209-12423228 | None:intergenic | 45.0% |
| CTCGTAGGGTATGATGGTAT+TGG | - | chr5_2:12423215-12423234 | None:intergenic | 45.0% | |
| GTAATTCCATCCATGCGAGT+TGG | - | chr5_2:12423239-12423258 | None:intergenic | 45.0% | |
| ATGGTAGGAGAAAGGAAGAG+GGG | - | chr5_2:12423265-12423284 | None:intergenic | 45.0% | |
| GAATGGTAGGAGAAAGGAAG+AGG | - | chr5_2:12423267-12423286 | None:intergenic | 45.0% | |
| CTAAGGGGTGGAAGATTTGT+TGG | - | chr5_2:12423311-12423330 | None:intergenic | 45.0% | |
| CAACAAATCTTCCACCCCTT+AGG | + | chr5_2:12423309-12423328 | Msa0757540:CDS | 45.0% | |
| GCACTGTTGGAAATCCTAAG+GGG | - | chr5_2:12423326-12423345 | None:intergenic | 45.0% | |
| ! | GAGCACTGTTGGAAATCCTA+AGG | - | chr5_2:12423328-12423347 | None:intergenic | 45.0% |
| GAACTTCTCGGAGAAGAAAG+AGG | - | chr5_2:12423362-12423381 | None:intergenic | 45.0% | |
| ! | TGACTCATCGCATTCTGGAA+TGG | - | chr5_2:12423507-12423526 | None:intergenic | 45.0% |
| CGATGAGTCAGATGCTTCTA+CGG | + | chr5_2:12423517-12423536 | Msa0757540:CDS | 45.0% | |
| TTTCAGACAACAACTGCCCA+TGG | + | chr5_2:12423563-12423582 | Msa0757540:CDS | 45.0% | |
| TGAATTCTCTCACCTTCCCA+CGG | - | chr5_2:12423761-12423780 | None:intergenic | 45.0% | |
| GGAAGGTGAGAGAATTCATG+AGG | + | chr5_2:12423763-12423782 | Msa0757540:CDS | 45.0% | |
| GGTGAGAGAATTCATGAGGT+AGG | + | chr5_2:12423767-12423786 | Msa0757540:CDS | 45.0% | |
| TGAGGTAGGAATGGAAGAGT+TGG | + | chr5_2:12423781-12423800 | Msa0757540:CDS | 45.0% | |
| GAAGAGTTGGAGCTTACTCT+AGG | + | chr5_2:12423794-12423813 | Msa0757540:CDS | 45.0% | |
| !! | TTGGAGCTTACTCTAGGGTT+TGG | + | chr5_2:12423800-12423819 | Msa0757540:CDS | 45.0% |
| !! | GCTTACTCTAGGGTTTGGAA+AGG | + | chr5_2:12423805-12423824 | Msa0757540:CDS | 45.0% |
| ! | CTGCTACTTCTGCATTAGTC+AGG | + | chr5_2:12423957-12423976 | Msa0757540:three_prime_UTR | 45.0% |
| TACCAAGACCAAGGGTAACA+AGG | + | chr5_2:12424121-12424140 | Msa0757540:three_prime_UTR | 45.0% | |
| AGACTGTGGACTTGGGAATG+AGG | - | chr5_2:12423177-12423196 | None:intergenic | 50.0% | |
| GTTGGACTCGTAGGGTATGA+TGG | - | chr5_2:12423221-12423240 | None:intergenic | 50.0% | |
| GCGGATGAATGGTAGGAGAA+AGG | - | chr5_2:12423273-12423292 | None:intergenic | 50.0% | |
| CTGTTGGAAATCCTAAGGGG+TGG | - | chr5_2:12423323-12423342 | None:intergenic | 50.0% | |
| GAAGAAAGAGGTGGCGTAAC+AGG | - | chr5_2:12423350-12423369 | None:intergenic | 50.0% | |
| CTTCTCGGAGAAGAAAGAGG+TGG | - | chr5_2:12423359-12423378 | None:intergenic | 50.0% | |
| GTGGCGAAACGTGGAGTTAA+AGG | - | chr5_2:12423423-12423442 | None:intergenic | 50.0% | |
| TGGTGCAGAGGTAGCGAAAA+GGG | - | chr5_2:12423447-12423466 | None:intergenic | 50.0% | |
| ATGGTGCAGAGGTAGCGAAA+AGG | - | chr5_2:12423448-12423467 | None:intergenic | 50.0% | |
| GTAAGTGGTTACGTCGCGAA+GGG | - | chr5_2:12423475-12423494 | None:intergenic | 50.0% | |
| !! | CATTCTGGAATGGTGGAAGG+GGG | - | chr5_2:12423497-12423516 | None:intergenic | 50.0% |
| !! | GCATTCTGGAATGGTGGAAG+GGG | - | chr5_2:12423498-12423517 | None:intergenic | 50.0% |
| !! | CGCATTCTGGAATGGTGGAA+GGG | - | chr5_2:12423499-12423518 | None:intergenic | 50.0% |
| !! | TCGCATTCTGGAATGGTGGA+AGG | - | chr5_2:12423500-12423519 | None:intergenic | 50.0% |
| !! | CTCATCGCATTCTGGAATGG+TGG | - | chr5_2:12423504-12423523 | None:intergenic | 50.0% |
| GCATCTGACTCATCGCATTC+TGG | - | chr5_2:12423512-12423531 | None:intergenic | 50.0% | |
| TGAGTCAGATGCTTCTACGG+TGG | + | chr5_2:12423520-12423539 | Msa0757540:CDS | 50.0% | |
| TGAACCTGCACTCCATTGCA+TGG | - | chr5_2:12423681-12423700 | None:intergenic | 50.0% | |
| TCAGCTACTGAGAGAGGTAG+AGG | + | chr5_2:12423698-12423717 | Msa0757540:CDS | 50.0% | |
| CCTATCTCACCCAGAAAACC+AGG | - | chr5_2:12423924-12423943 | None:intergenic | 50.0% | |
| !! | CCTGGTTTTCTGGGTGAGAT+AGG | + | chr5_2:12423921-12423940 | Msa0757540:three_prime_UTR | 50.0% |
| GGGTGAGATAGGACATTGCT+CGG | + | chr5_2:12423932-12423951 | Msa0757540:three_prime_UTR | 50.0% | |
| CACCTTGTTACCCTTGGTCT+TGG | - | chr5_2:12424126-12424145 | None:intergenic | 50.0% | |
| !! | CCATGTTGGTAATCTCCCGG+AGG | - | chr5_2:12422149-12422168 | None:intergenic | 55.0% |
| CCTCCGGGAGATTACCAACA+TGG | + | chr5_2:12422146-12422165 | Msa0757540:CDS | 55.0% | |
| CTCGGGAACGAAGAAGACTG+TGG | - | chr5_2:12423191-12423210 | None:intergenic | 55.0% | |
| ! | CCATGCGAGTTGGACTCGTA+GGG | - | chr5_2:12423229-12423248 | None:intergenic | 55.0% |
| ! | TCCATGCGAGTTGGACTCGT+AGG | - | chr5_2:12423230-12423249 | None:intergenic | 55.0% |
| ACGAGTCCAACTCGCATGGA+TGG | + | chr5_2:12423230-12423249 | Msa0757540:CDS | 55.0% | |
| !! | TGGCGTAACAGGAGCACTGT+TGG | - | chr5_2:12423339-12423358 | None:intergenic | 55.0% |
| GTGCAGAGGTAGCGAAAAGG+GGG | - | chr5_2:12423445-12423464 | None:intergenic | 55.0% | |
| GGTGCAGAGGTAGCGAAAAG+GGG | - | chr5_2:12423446-12423465 | None:intergenic | 55.0% | |
| TTACGTCGCGAAGGGCTTGA+TGG | - | chr5_2:12423467-12423486 | None:intergenic | 55.0% | |
| GGTAAGTGGTTACGTCGCGA+AGG | - | chr5_2:12423476-12423495 | None:intergenic | 55.0% | |
| ! | GAATGGTGGAAGGGGGTAAG+TGG | - | chr5_2:12423490-12423509 | None:intergenic | 55.0% |
| ! | GATGCTTCTACGGTGGACTC+TGG | + | chr5_2:12423527-12423546 | Msa0757540:CDS | 55.0% |
| ! | CTTCTACGGTGGACTCTGGT+AGG | + | chr5_2:12423531-12423550 | Msa0757540:CDS | 55.0% |
| ! | TACGGTGGACTCTGGTAGGT+GGG | + | chr5_2:12423535-12423554 | Msa0757540:CDS | 55.0% |
| TGGGGAGTGATCTGCATTGC+TGG | - | chr5_2:12423626-12423645 | None:intergenic | 55.0% | |
| GATCACTCCCCAGAGTTCGA+TGG | + | chr5_2:12423634-12423653 | Msa0757540:CDS | 55.0% | |
| GAAGCCATGCAATGGAGTGC+AGG | + | chr5_2:12423674-12423693 | Msa0757540:CDS | 55.0% | |
| GCAGGTTCAGCTACTGAGAG+AGG | + | chr5_2:12423692-12423711 | Msa0757540:CDS | 55.0% | |
| CTCTTCGCCGGAACGATGAC+CGG | + | chr5_2:12422115-12422134 | Msa0757540:exon | 60.0% | |
| CCCTACGAGTCCAACTCGCA+TGG | + | chr5_2:12423226-12423245 | Msa0757540:CDS | 60.0% | |
| GAAAAGGGGGTGGCGAAACG+TGG | - | chr5_2:12423432-12423451 | None:intergenic | 60.0% | |
| CAGAGGTAGCGAAAAGGGGG+TGG | - | chr5_2:12423442-12423461 | None:intergenic | 60.0% | |
| !! | CGAAGGGCTTGATGGTGCAG+AGG | - | chr5_2:12423459-12423478 | None:intergenic | 60.0% |
| ! | CTACGGTGGACTCTGGTAGG+TGG | + | chr5_2:12423534-12423553 | Msa0757540:CDS | 60.0% |
| GGAAGGAGGAGCTGCACCAT+GGG | - | chr5_2:12423582-12423601 | None:intergenic | 60.0% | |
| ATGGCAGAGTCGTGAAGCCG+TGG | + | chr5_2:12423741-12423760 | Msa0757540:CDS | 60.0% | |
| TGGCAGAGTCGTGAAGCCGT+GGG | + | chr5_2:12423742-12423761 | Msa0757540:CDS | 60.0% | |
| AGAGTCGTGAAGCCGTGGGA+AGG | + | chr5_2:12423746-12423765 | Msa0757540:CDS | 60.0% | |
| TTCGCCGGAACGATGACCGG+CGG | + | chr5_2:12422118-12422137 | Msa0757540:exon | 65.0% | |
| TCCACCGCCGGTCATCGTTC+CGG | - | chr5_2:12422125-12422144 | None:intergenic | 65.0% | |
| ATGACCGGCGGTGGATCCTC+CGG | + | chr5_2:12422130-12422149 | Msa0757540:CDS | 65.0% | |
| GGGAAGGAGGAGCTGCACCA+TGG | - | chr5_2:12423583-12423602 | None:intergenic | 65.0% | |
| TGACCGGCGGTGGATCCTCC+GGG | + | chr5_2:12422131-12422150 | Msa0757540:CDS | 70.0% | |
| TCTCCCGGAGGATCCACCGC+CGG | - | chr5_2:12422137-12422156 | None:intergenic | 70.0% | |
| GCCGGAACGATGACCGGCGG+TGG | + | chr5_2:12422121-12422140 | Msa0757540:exon | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 12421945 | 12424585 | 12421945 | ID=Msa0757540;Name=Msa0757540 |
| chr5_2 | mRNA | 12421945 | 12424585 | 12421945 | ID=Msa0757540-mRNA-1;Parent=Msa0757540;Name=Msa0757540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=185|1|1|1|1|1|2|753|323 |
| chr5_2 | exon | 12421945 | 12422354 | 12421945 | ID=Msa0757540-mRNA-1:exon:5545;Parent=Msa0757540-mRNA-1 |
| chr5_2 | exon | 12423086 | 12424585 | 12423086 | ID=Msa0757540-mRNA-1:exon:5546;Parent=Msa0757540-mRNA-1 |
| chr5_2 | five_prime_UTR | 12421945 | 12422129 | 12421945 | ID=Msa0757540-mRNA-1:five_prime_utr;Parent=Msa0757540-mRNA-1 |
| chr5_2 | CDS | 12422130 | 12422354 | 12422130 | ID=Msa0757540-mRNA-1:cds;Parent=Msa0757540-mRNA-1 |
| chr5_2 | CDS | 12423086 | 12423832 | 12423086 | ID=Msa0757540-mRNA-1:cds;Parent=Msa0757540-mRNA-1 |
| chr5_2 | three_prime_UTR | 12423833 | 12424585 | 12423833 | ID=Msa0757540-mRNA-1:three_prime_utr;Parent=Msa0757540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
