AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0459260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459260 MtrunA17_Chr3g0107471 84.385 634 45 4 1 627 1 587 0.0 996
Msa0459260 MtrunA17_Chr3g0144601 33.679 193 111 7 8 185 6 196 1.25e-12 70.5
Msa0459260 MtrunA17_Chr3g0145531 33.679 193 111 7 8 185 6 196 1.72e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459260 AT1G15720.1 30.159 189 121 5 3 182 2 188 2.11e-14 75.9
Msa0459260 AT5G58340.2 29.167 192 125 4 3 185 2 191 1.07e-12 71.2
Msa0459260 AT5G58340.1 29.167 192 125 4 3 185 2 191 1.07e-12 71.2

Find 240 sgRNAs with CRISPR-Local

Find 485 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCAAAGAACTTAATTTA+AGG 0.135930 3_3:-55754137 None:intergenic
TATTTGAACTGTTCTTATTT+TGG 0.146418 3_3:+55757521 Msa0459260:three_prime_UTR
GTCCCTTAAATTAAGTTCTT+TGG 0.200154 3_3:+55754134 Msa0459260:CDS
TAAATTTCAGGTTTATCTTT+TGG 0.262571 3_3:+55757282 Msa0459260:intron
AGAAGGTTGTTAGAAGGTTT+GGG 0.274634 3_3:+55751553 Msa0459260:CDS
CAATACCTTCCTAGGATATA+TGG 0.284064 3_3:-55755410 None:intergenic
AAGGTGCGCTTTGGGATGTT+AGG 0.293183 3_3:+55751353 Msa0459260:CDS
TGATGGGAGGTTAGAAGGTT+TGG 0.294386 3_3:+55753096 Msa0459260:CDS
AAGCGTGATGGGAGGTTAGA+AGG 0.309015 3_3:+55753091 Msa0459260:CDS
TAGAAGGTTGTTAGAAGGTT+TGG 0.315126 3_3:+55751552 Msa0459260:CDS
AATGGGAGAGTAGAAGGTTT+AGG 0.318960 3_3:+55751802 Msa0459260:CDS
CTCCAAAGAACTTAATTTAA+GGG 0.322205 3_3:-55754136 None:intergenic
AGCCATTCTCTTCCAATTGC+CGG 0.324209 3_3:-55751753 None:intergenic
TGTCGGATGGGTTTGTGCGG+TGG 0.333320 3_3:+55751317 Msa0459260:CDS
CGGATGGGTTTGTGCGGTGG+GGG 0.333508 3_3:+55751320 Msa0459260:CDS
AGGCGTAATGGGAGAGTAGA+AGG 0.337405 3_3:+55751796 Msa0459260:CDS
AGAAGGTTGTTAGAAGGATT+GGG 0.339149 3_3:+55751688 Msa0459260:CDS
AAACATCTCAAACTGGATAA+TGG 0.339343 3_3:+55750943 Msa0459260:CDS
GGGAGTAGAAGGTTGTTAGA+AGG 0.341083 3_3:+55751682 Msa0459260:CDS
TTTCGGCGGTGAAGAGGATT+TGG 0.346079 3_3:+55751269 Msa0459260:CDS
TGGAGGGGAAGGAGAGGGAG+TGG 0.346595 3_3:+55751289 Msa0459260:CDS
TAGAAGGTTGTTAGAAGGAT+TGG 0.352149 3_3:+55751687 Msa0459260:CDS
TACTTCTGTTGATGCGAATC+AGG 0.354114 3_3:+55751939 Msa0459260:CDS
ATGGGAGAGTAGAAGGTTTA+GGG 0.354705 3_3:+55751803 Msa0459260:CDS
GTCGGATGGGTTTGTGCGGT+GGG 0.357265 3_3:+55751318 Msa0459260:CDS
GGGAGTAGAAGGTTGTTAGA+AGG 0.363398 3_3:+55751547 Msa0459260:CDS
AGACAAGAATGCAGATATAA+AGG 0.364517 3_3:-55756699 None:intergenic
GATGGGAGGTTAGAAGGTTT+GGG 0.367747 3_3:+55753097 Msa0459260:CDS
CTTGCCCGTCGCATTAAGTT+GGG 0.371138 3_3:-55754429 None:intergenic
TTGTTTCTCCAATAGAAATT+CGG 0.371218 3_3:+55753962 Msa0459260:intron
GCAGGTTTGGAGAAGGAAAC+TGG 0.377930 3_3:+55755195 Msa0459260:intron
TGTTAGAAGGTTTGGGGAAA+AGG 0.379187 3_3:+55751560 Msa0459260:CDS
TGTAGCCAATTTGGATCTTA+CGG 0.379477 3_3:-55754211 None:intergenic
TGAAGCCGTAAGATCCAAAT+TGG 0.381380 3_3:+55754206 Msa0459260:CDS
AGAGATTGAAGGTGCGCTTT+GGG 0.383115 3_3:+55751345 Msa0459260:CDS
AGGGTTGCAGAGAGGTTGGT+GGG 0.383275 3_3:+55751373 Msa0459260:CDS
TTTCTATCACGAATGCGTTT+CGG 0.384690 3_3:+55751167 Msa0459260:CDS
CGGAGAGTGGAAGTAGGGTT+AGG 0.385447 3_3:-55751015 None:intergenic
GGGAGTGGGTTGGTGTCGGA+TGG 0.390596 3_3:+55751304 Msa0459260:CDS
GTCAGCCAAGAAGGAAGAAA+AGG 0.392804 3_3:+55755004 Msa0459260:CDS
TGTTAGGGTTGCAGAGAGGT+TGG 0.393283 3_3:+55751369 Msa0459260:CDS
AAGAGATTGAAGGTGCGCTT+TGG 0.396331 3_3:+55751344 Msa0459260:CDS
CATTCTTGTCTCAAGGGCTC+AGG 0.396527 3_3:+55756711 Msa0459260:three_prime_UTR
GAAGGGGAATGGTTTGTGTC+CGG 0.405618 3_3:+55751498 Msa0459260:CDS
GTGGATTCTAACATGGACTT+TGG 0.410867 3_3:-55756663 None:intergenic
GAATGTCGAGGAGGCGTAAT+GGG 0.411679 3_3:+55751785 Msa0459260:CDS
CAAGATGTTCGAGGATTTGA+AGG 0.416839 3_3:-55751120 None:intergenic
ATATCTGCATTCTTGTCTCA+AGG 0.420947 3_3:+55756704 Msa0459260:three_prime_UTR
CAAGAAAACAATACCTTCCT+AGG 0.422293 3_3:-55755418 None:intergenic
GCATCTAGAATGGGAGATAA+AGG 0.423517 3_3:+55751982 Msa0459260:CDS
CGACGATCATTACTATAGTT+GGG 0.429090 3_3:-55754405 None:intergenic
ACCTCTGGAATGAGAGATAA+AGG 0.429332 3_3:+55753241 Msa0459260:CDS
TCGGATGGGTTTGTGCGGTG+GGG 0.432036 3_3:+55751319 Msa0459260:CDS
GCGACGATCATTACTATAGT+TGG 0.433098 3_3:-55754406 None:intergenic
GATCGGGAACGGTGGTGTTA+CGG 0.434808 3_3:-55750976 None:intergenic
ATGCTGCTGAGGGGAGTAGA+AGG 0.436345 3_3:+55751536 Msa0459260:CDS
ATGCTGCTGAGGGGAGTAGA+AGG 0.436345 3_3:+55751671 Msa0459260:CDS
GCGAATATGGGCAACTTGAA+AGG 0.437533 3_3:+55757304 Msa0459260:three_prime_UTR
GGTTGGTGGGGTTGAATACA+AGG 0.441539 3_3:+55751386 Msa0459260:CDS
GGATGGGTTTGTGCGGTGGG+GGG 0.441794 3_3:+55751321 Msa0459260:CDS
TGGATTCTAACATGGACTTT+GGG 0.442952 3_3:-55756662 None:intergenic
AAGGGGAATGGTTTGTGTCC+GGG 0.445060 3_3:+55751499 Msa0459260:CDS
ATATACACAAGATTACTAAC+AGG 0.445233 3_3:-55757642 None:intergenic
AGATTGAAGCGTTGAGGATG+TGG 0.446039 3_3:-55751087 None:intergenic
AAATCATGGTAACCGGCAAT+TGG 0.446442 3_3:+55751741 Msa0459260:CDS
AGGATTTGGAGGGGAAGGAG+AGG 0.449026 3_3:+55751283 Msa0459260:CDS
TCAGATGTGTGCAATGCATC+AGG 0.450692 3_3:-55754186 None:intergenic
AGTGAGGTGGGAGGTCCAAC+TGG 0.450696 3_3:+55756636 Msa0459260:three_prime_UTR
GAAGAGAATGGCTCGGGTGG+TGG 0.450981 3_3:+55751763 Msa0459260:CDS
ACTTGCCCGTCGCATTAAGT+TGG 0.452491 3_3:-55754430 None:intergenic
GCAAGCTGGTGCATCTAGAA+TGG 0.453200 3_3:+55751972 Msa0459260:CDS
TGAACGAAAACATCTCAAAC+TGG 0.454273 3_3:+55750936 Msa0459260:CDS
ATTGAAGAACGCGGAGGAGG+AGG 0.455241 3_3:-55751063 None:intergenic
AGAAATCTCCTTGGCAACAT+TGG 0.455327 3_3:-55754337 None:intergenic
AAGGGGAATGGTTTGTGTCC+AGG 0.458031 3_3:+55751634 Msa0459260:CDS
AAATCGTGGCAATGAACAAT+TGG 0.458465 3_3:+55753204 Msa0459260:CDS
TAGGGTTGCAGAGAGGTTGG+TGG 0.458519 3_3:+55751372 Msa0459260:CDS
GATTAGCAATACCCTATAGA+TGG 0.460212 3_3:-55757460 None:intergenic
GAAAAGGAAATGGACTTCCT+TGG 0.461062 3_3:+55755020 Msa0459260:CDS
GGATTTGGAGGGGAAGGAGA+GGG 0.461933 3_3:+55751284 Msa0459260:CDS
TGCTGATGTGAAGAAACTTC+GGG 0.463279 3_3:+55754110 Msa0459260:CDS
AATGATAATGATAATGTTGA+TGG 0.463337 3_3:+55753154 Msa0459260:CDS
TTCTTTGGAGCTAAAAGCAT+TGG 0.464026 3_3:+55754149 Msa0459260:CDS
TTGGTGAAAATCATGGTAAC+CGG 0.464556 3_3:+55751734 Msa0459260:CDS
AACATATTTGAATATAGAAA+TGG 0.466093 3_3:+55755242 Msa0459260:exon
TTGAATTAGGGGATCGGGAA+CGG 0.467490 3_3:-55750987 None:intergenic
GGACGATGATGTAGCATTGA+TGG 0.471228 3_3:+55753177 Msa0459260:CDS
GAAGCGATAGTTCGCACCTC+TGG 0.476524 3_3:+55753226 Msa0459260:CDS
GGAGGGGAAGGAGAGGGAGT+GGG 0.478128 3_3:+55751290 Msa0459260:CDS
ATTATTTAAGGTTGATCTGA+AGG 0.479641 3_3:+55755337 Msa0459260:intron
AAGATTTGAGGAAGCGTGAT+GGG 0.480627 3_3:+55753080 Msa0459260:CDS
TTGATAGCAGGTTCGAGCTA+TGG 0.481170 3_3:+55756576 Msa0459260:intron
CACCTCACTATCTCACTAGT+TGG 0.485078 3_3:-55756622 None:intergenic
AAATCATGGCAATGATGAAT+CGG 0.485766 3_3:+55751903 Msa0459260:CDS
GGAGTGGGTTGGTGTCGGAT+GGG 0.486568 3_3:+55751305 Msa0459260:CDS
CGCAACAAAGTCAGCCAAGA+AGG 0.491405 3_3:+55754995 Msa0459260:CDS
TACAATTCAGATCTCAAAGT+TGG 0.491521 3_3:-55757340 None:intergenic
CACAAGGGAGTTAAACTCTC+TGG 0.493055 3_3:+55754033 Msa0459260:CDS
TTGGCAACATTGGCATCATT+AGG 0.495297 3_3:-55754327 None:intergenic
CTGTCTCTTCTAACATGAGT+TGG 0.496070 3_3:+55757561 Msa0459260:three_prime_UTR
TACTCACCAGACGGATCCTC+CGG 0.496317 3_3:-55751244 None:intergenic
CGAATATGGGCAACTTGAAA+GGG 0.497130 3_3:+55757305 Msa0459260:three_prime_UTR
ATGCGGTTGTTGAAGTGAAG+AGG 0.497546 3_3:+55751413 Msa0459260:CDS
TATCTGCATTCTTGTCTCAA+GGG 0.499196 3_3:+55756705 Msa0459260:three_prime_UTR
CCTTCCTAGGATATATGGAC+AGG 0.499870 3_3:-55755405 None:intergenic
CATCCCTGTCCATATATCCT+AGG 0.500544 3_3:+55755401 Msa0459260:three_prime_UTR
TGCTGTTGCGGTTGAATGTA+CGG 0.501252 3_3:+55751201 Msa0459260:CDS
CGTGAATCGGCGCCGGAGAG+TGG 0.505542 3_3:-55751028 None:intergenic
GAGAGGGAGTGGGTTGGTGT+CGG 0.507948 3_3:+55751300 Msa0459260:CDS
TGAAGAGGATTTGGAGGGGA+AGG 0.508482 3_3:+55751278 Msa0459260:CDS
TGTCTCTTCTAACATGAGTT+GGG 0.508914 3_3:+55757562 Msa0459260:three_prime_UTR
GGAGAGTGGAAGTAGGGTTA+GGG 0.509768 3_3:-55751014 None:intergenic
CAAGAAGGAAGAAAAGGAAA+TGG 0.510534 3_3:+55755010 Msa0459260:CDS
GAAGGTTGTTAGAAGGATTG+GGG 0.511656 3_3:+55751689 Msa0459260:CDS
GATCTTCCTAACTGTAGTAA+TGG 0.512568 3_3:+55754375 Msa0459260:CDS
TCTAACATGAGTTGGGCGAT+TGG 0.512707 3_3:+55757569 Msa0459260:three_prime_UTR
TCATGTTAGAAGAGACAGTC+AGG 0.513656 3_3:-55757556 None:intergenic
GAACGGTGGTGTTACGGAGG+AGG 0.514258 3_3:-55750970 None:intergenic
TTGAAGAACGCGGAGGAGGA+GGG 0.514833 3_3:-55751062 None:intergenic
GCGATGGTTTCGAAGGGGAA+TGG 0.517229 3_3:+55751487 Msa0459260:CDS
GCGATGGTTTCGAAGGGGAA+TGG 0.517229 3_3:+55751622 Msa0459260:CDS
GAAGTATTTGATTAATTCGC+CGG 0.517468 3_3:+55751225 Msa0459260:CDS
TTCTTATGCAGGTTTGGAGA+AGG 0.518405 3_3:+55755188 Msa0459260:intron
CGGCGGTGAAGAGGATTTGG+AGG 0.520447 3_3:+55751272 Msa0459260:CDS
CGACTACCATTACTACAGTT+AGG 0.521441 3_3:-55754381 None:intergenic
GTTTCTTGATTTGATTGCGA+TGG 0.522727 3_3:+55751471 Msa0459260:CDS
ATATGTTGCTGTAAAAGTCT+AGG 0.524611 3_3:-55755226 None:intergenic
TTGCTGATGTGAAGAAACTT+CGG 0.526628 3_3:+55754109 Msa0459260:CDS
CCTTGGAAGAAGAGACACTA+AGG 0.527054 3_3:+55755037 Msa0459260:CDS
CAAGCTGGTGCATCTAGAAT+GGG 0.530425 3_3:+55751973 Msa0459260:CDS
CTCAGGGCACATCTTAACTA+AGG 0.532129 3_3:+55756728 Msa0459260:three_prime_UTR
GGAATGTCGAGGAGGCGTAA+TGG 0.533823 3_3:+55751784 Msa0459260:CDS
ATTCTTGTCTCAAGGGCTCA+GGG 0.533936 3_3:+55756712 Msa0459260:three_prime_UTR
GTGTGCAATGCATCAGGAAG+AGG 0.534240 3_3:-55754180 None:intergenic
GGGATTGAAGAACGCGGAGG+AGG 0.535565 3_3:-55751066 None:intergenic
AGGTGCGCTTTGGGATGTTA+GGG 0.535657 3_3:+55751354 Msa0459260:CDS
AATTCGCCGGAGGATCCGTC+TGG 0.535840 3_3:+55751238 Msa0459260:CDS
TTTGAGACGTGAATCGGCGC+CGG 0.540038 3_3:-55751035 None:intergenic
GGGAAGGAGAGGGAGTGGGT+TGG 0.540529 3_3:+55751294 Msa0459260:CDS
CCTTAGTGTCTCTTCTTCCA+AGG 0.542109 3_3:-55755037 None:intergenic
GATTGAAGCGTTGAGGATGT+GGG 0.542160 3_3:-55751086 None:intergenic
TAGTGATGATGAGATGATGA+TGG 0.542742 3_3:+55751876 Msa0459260:CDS
AATGATGTTGGTGAAAATCA+TGG 0.542892 3_3:+55751727 Msa0459260:CDS
TGTTGATGCGAATCAGGAAG+TGG 0.544009 3_3:+55751945 Msa0459260:CDS
TAGTGAGCTATCATGGATGC+AGG 0.548913 3_3:+55755089 Msa0459260:CDS
CTTCTTGGCTGACTTTGTTG+CGG 0.549683 3_3:-55754994 None:intergenic
ATGGACTTTGGGTTGCCAGT+TGG 0.550504 3_3:-55756651 None:intergenic
TCGCCCCAACTTAATGCGAC+GGG 0.550818 3_3:+55754425 Msa0459260:CDS
CGGCGCCGGAGAGTGGAAGT+AGG 0.551999 3_3:-55751021 None:intergenic
GAGGATTTGAAGGGAGACTT+CGG 0.552616 3_3:-55751110 None:intergenic
AAATCTCTTCAAGATGTTCG+AGG 0.553739 3_3:-55751129 None:intergenic
GAAGATTTGAGGAAGCGTGA+TGG 0.556415 3_3:+55753079 Msa0459260:CDS
GAAGGTTGTTAGAAGGTTTG+GGG 0.557542 3_3:+55751554 Msa0459260:CDS
AAAGATTGCGATGGTTTCGA+AGG 0.559220 3_3:+55751615 Msa0459260:CDS
TTGATTGCGATGGTTTCGAA+GGG 0.559576 3_3:+55751481 Msa0459260:CDS
ATGCAGATATAAAGGAGAAG+TGG 0.560386 3_3:-55756691 None:intergenic
TTTGATTGCGATGGTTTCGA+AGG 0.560926 3_3:+55751480 Msa0459260:CDS
ACAAGGAACAGAAATCTCCT+TGG 0.563260 3_3:-55754346 None:intergenic
AACCGGCAATTGGAAGAGAA+TGG 0.567200 3_3:+55751751 Msa0459260:CDS
TAAAGGAGAAGTGGTTTGAG+TGG 0.567303 3_3:-55756682 None:intergenic
GGGTTGCAGAGAGGTTGGTG+GGG 0.568853 3_3:+55751374 Msa0459260:CDS
GAGAAAGTGAATAATGATGT+TGG 0.569773 3_3:+55751715 Msa0459260:CDS
CAGGAAGTGGAACAGCAAGC+TGG 0.573349 3_3:+55751958 Msa0459260:CDS
AGGTTGATCTGAAGGACAAG+TGG 0.574976 3_3:+55755345 Msa0459260:intron
AACTAGTGAGATAGTGAGGT+GGG 0.576228 3_3:+55756624 Msa0459260:three_prime_UTR
ATGATAATGATAATGTTGAT+GGG 0.578426 3_3:+55753155 Msa0459260:CDS
GCAATTGGAAGAGAATGGCT+CGG 0.579023 3_3:+55751756 Msa0459260:CDS
CAATTGGAAGAGAATGGCTC+GGG 0.580408 3_3:+55751757 Msa0459260:CDS
AAGGAGAAAATGAATGATGA+TGG 0.580983 3_3:+55753121 Msa0459260:CDS
GAAGAAGAGACACTAAGGGC+TGG 0.584293 3_3:+55755042 Msa0459260:CDS
GGCGCCGGAGAGTGGAAGTA+GGG 0.585546 3_3:-55751020 None:intergenic
TGAGAGTATTTGGCAGCACT+AGG 0.587271 3_3:-55757594 None:intergenic
GTCGCCCCAACTTAATGCGA+CGG 0.587509 3_3:+55754424 Msa0459260:CDS
GGCGGTGAAGAGGATTTGGA+GGG 0.588504 3_3:+55751273 Msa0459260:CDS
AAGATTGCGATGGTTTCGAA+GGG 0.589044 3_3:+55751616 Msa0459260:CDS
TTGGAAGAGAATGGCTCGGG+TGG 0.589660 3_3:+55751760 Msa0459260:CDS
GAGTGCTTACTGTGCTGTTG+CGG 0.590232 3_3:+55751189 Msa0459260:CDS
GAATGATGATGATGTAGCAA+TGG 0.591271 3_3:+55751588 Msa0459260:CDS
GATGAATCGGAAGAGAGAGT+TGG 0.595938 3_3:+55751916 Msa0459260:CDS
GAAGAGATTTACCGCGACGA+CGG 0.596500 3_3:+55751142 Msa0459260:CDS
ATTCAGATCTCAAAGTTGGT+AGG 0.596783 3_3:-55757336 None:intergenic
ATTTGAGGAAGCGTGATGGG+AGG 0.597213 3_3:+55753083 Msa0459260:CDS
GAGGTTAGAAGGTTTGGGAA+AGG 0.597583 3_3:+55753102 Msa0459260:CDS
CCTGTCCATATATCCTAGGA+AGG 0.597974 3_3:+55755405 Msa0459260:three_prime_UTR
CTTCGGAGATTGAAGCGTTG+AGG 0.600967 3_3:-55751093 None:intergenic
CTACAAAAGATATGAATCGC+AGG 0.602118 3_3:+55754229 Msa0459260:CDS
TTGCCCGTCGCATTAAGTTG+GGG 0.602722 3_3:-55754428 None:intergenic
GCTCGGGTGGTGGAATGTCG+AGG 0.603376 3_3:+55751773 Msa0459260:CDS
TAATGATGCCAATGTTGCCA+AGG 0.604037 3_3:+55754329 Msa0459260:CDS
ACCTTTATCTCTCATTCCAG+AGG 0.609794 3_3:-55753242 None:intergenic
GGTTTGAGTGGATTCTAACA+TGG 0.610413 3_3:-55756670 None:intergenic
AATGATGATGATGTAGCAAT+GGG 0.610427 3_3:+55751589 Msa0459260:CDS
AGTTAAACTCTCTGGTGATG+AGG 0.611191 3_3:+55754041 Msa0459260:CDS
AAGTCATGCTCAGACATACA+AGG 0.612752 3_3:+55754449 Msa0459260:CDS
CTTCCTAGGATATATGGACA+GGG 0.616469 3_3:-55755404 None:intergenic
CTAACCCTACTTCCACTCTC+CGG 0.617416 3_3:+55751016 Msa0459260:CDS
AGTGATGATGAGATGATGAT+GGG 0.618561 3_3:+55751877 Msa0459260:CDS
TGTTTGTGAAAATGCTGCTG+AGG 0.619713 3_3:+55751525 Msa0459260:CDS
TGTTTGTGAAAATGCTGCTG+AGG 0.619713 3_3:+55751660 Msa0459260:CDS
ATAGAAATTCGGAAAGACAA+TGG 0.620587 3_3:+55753973 Msa0459260:intron
GACGATCATTACTATAGTTG+GGG 0.624100 3_3:-55754404 None:intergenic
GGTGTTTGTGAAATTGCTGA+AGG 0.632383 3_3:+55753052 Msa0459260:intron
GTGTTTGTGAAATTGCTGAA+GGG 0.634138 3_3:+55753053 Msa0459260:CDS
TGTTTGTGAAATTGCTGAAG+GGG 0.634167 3_3:+55753054 Msa0459260:CDS
AATGGGTGAAAAGATTGCGA+TGG 0.635009 3_3:+55751606 Msa0459260:CDS
ATCCAACTAGTGAGATAGTG+AGG 0.636525 3_3:+55756620 Msa0459260:three_prime_UTR
ATGATGATGGGTGAAAATCA+TGG 0.641026 3_3:+55751889 Msa0459260:CDS
AATTAGGGGATCGGGAACGG+TGG 0.641310 3_3:-55750984 None:intergenic
CGGGAACGGTGGTGTTACGG+AGG 0.642164 3_3:-55750973 None:intergenic
TGGTGTCGGATGGGTTTGTG+CGG 0.644277 3_3:+55751314 Msa0459260:CDS
AAGATGTTCGAGGATTTGAA+GGG 0.644288 3_3:-55751119 None:intergenic
CTTGGAAGAAGAGACACTAA+GGG 0.646858 3_3:+55755038 Msa0459260:CDS
TTAGGAAGATCACTACTACA+AGG 0.647851 3_3:-55754363 None:intergenic
GTTTGTGAAAATGCTGCTGA+GGG 0.652459 3_3:+55751526 Msa0459260:CDS
GTTTGTGAAAATGCTGCTGA+GGG 0.652459 3_3:+55751661 Msa0459260:CDS
AAAATGAATGATGATGAGAA+TGG 0.653698 3_3:+55751832 Msa0459260:CDS
TGATAGAAACTCCGTCGTCG+CGG 0.654431 3_3:-55751153 None:intergenic
TGATAATGATAATGTTGATG+GGG 0.658198 3_3:+55753156 Msa0459260:CDS
TCTCTGGTGATGAGGAAGCG+AGG 0.659290 3_3:+55754049 Msa0459260:CDS
CAACTAGTGAGATAGTGAGG+TGG 0.659549 3_3:+55756623 Msa0459260:three_prime_UTR
GATGATGTAGCATTGATGGA+TGG 0.661125 3_3:+55753181 Msa0459260:CDS
CGGGTGGTGGAATGTCGAGG+AGG 0.661807 3_3:+55751776 Msa0459260:CDS
GGGAATGGTTTGTGTCCGGG+AGG 0.663088 3_3:+55751502 Msa0459260:CDS
GTATTTGATTAATTCGCCGG+AGG 0.663609 3_3:+55751228 Msa0459260:CDS
TGATTGCGATGGTTTCGAAG+GGG 0.666531 3_3:+55751482 Msa0459260:CDS
GGGATGTTAGGGTTGCAGAG+AGG 0.669917 3_3:+55751365 Msa0459260:CDS
GTTTGTGAAATTGCTGAAGG+GGG 0.671919 3_3:+55753055 Msa0459260:CDS
GGGAATGGTTTGTGTCCAGG+AGG 0.689836 3_3:+55751637 Msa0459260:CDS
GTTGAATACAAGGAGAGATG+CGG 0.690966 3_3:+55751396 Msa0459260:CDS
AGATTGCGATGGTTTCGAAG+GGG 0.701674 3_3:+55751617 Msa0459260:CDS
GAAGATGAGTGAATACCACA+AGG 0.708455 3_3:-55757685 None:intergenic
ACAAGTGGAGAAATATGATG+CGG 0.711676 3_3:+55755360 Msa0459260:three_prime_UTR
TAGTGAGATAGTGAGGTGGG+AGG 0.712402 3_3:+55756627 Msa0459260:three_prime_UTR
GCATTGATGGATGGAAATCG+TGG 0.732089 3_3:+55753190 Msa0459260:CDS
GGATGTGGGATTGAAGAACG+CGG 0.737594 3_3:-55751072 None:intergenic
TGTGGGATTGAAGAACGCGG+AGG 0.740314 3_3:-55751069 None:intergenic
GCGGTGAAGAGGATTTGGAG+GGG 0.745177 3_3:+55751274 Msa0459260:CDS
TTTGTGAAAATGCTGCTGAG+GGG 0.761669 3_3:+55751527 Msa0459260:CDS
TTTGTGAAAATGCTGCTGAG+GGG 0.761669 3_3:+55751662 Msa0459260:CDS
GGTTTGGAGAAGGAAACTGG+AGG 0.780476 3_3:+55755198 Msa0459260:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATTTAAATTATAATTCT+CGG + chr3_3:55752112-55752131 Msa0459260:intron 10.0%
!! TTTAATCATTAAATTAAACT+AGG + chr3_3:55752872-55752891 Msa0459260:intron 10.0%
!! ACTGAAAAAAAAAAAAAAAT+AGG + chr3_3:55755591-55755610 Msa0459260:intron 10.0%
!! CTGAAAAAAAAAAAAAAATA+GGG + chr3_3:55755592-55755611 Msa0459260:intron 10.0%
!!! TTGTTTTTTTTTTTAAACCA+AGG - chr3_3:55752323-55752342 None:intergenic 15.0%
!! TTGGTTTAAAAAAAAAAACA+AGG + chr3_3:55752322-55752341 Msa0459260:intron 15.0%
!! TGGTTTAAAAAAAAAAACAA+GGG + chr3_3:55752323-55752342 Msa0459260:intron 15.0%
!! TTCAAAATTTAAAAGTCTTA+GGG - chr3_3:55752483-55752502 None:intergenic 15.0%
!!! AATTGTTATTTTTGTAAGTT+TGG + chr3_3:55753381-55753400 Msa0459260:intron 15.0%
!! AATGTAAATAACAATCAAAT+AGG - chr3_3:55753929-55753948 None:intergenic 15.0%
!! TATTTAGTCGAAAAATTTAT+CGG - chr3_3:55754075-55754094 None:intergenic 15.0%
!!! GTTTTTTATTATCATTTAGA+TGG + chr3_3:55754829-55754848 Msa0459260:intron 15.0%
!! AACATATTTGAATATAGAAA+TGG + chr3_3:55755242-55755261 Msa0459260:exon 15.0%
!!! TAAAATTGAAGTGTTATTAA+CGG - chr3_3:55755318-55755337 None:intergenic 15.0%
!!! CACTTCAATTTTATTATTTA+AGG + chr3_3:55755325-55755344 Msa0459260:intron 15.0%
!! CTTCAAAATTTAAAAGTCTT+AGG - chr3_3:55752484-55752503 None:intergenic 20.0%
!!! TTTCGTAATGTTTTGAATTT+TGG + chr3_3:55752514-55752533 Msa0459260:intron 20.0%
!! TAAAACCTTTCATAAGATTT+AGG + chr3_3:55752564-55752583 Msa0459260:intron 20.0%
!! ATAATCATAGTAGTTAATAG+CGG - chr3_3:55752791-55752810 None:intergenic 20.0%
!! CTATTAACTACTATGATTAT+CGG + chr3_3:55752791-55752810 Msa0459260:intron 20.0%
!! TCATTAAATTAAACTAGGTA+TGG + chr3_3:55752877-55752896 Msa0459260:intron 20.0%
!!! AGGATATTAGAATTTTTATG+AGG + chr3_3:55753015-55753034 Msa0459260:intron 20.0%
!!! GGATATTAGAATTTTTATGA+GGG + chr3_3:55753016-55753035 Msa0459260:intron 20.0%
!!! AATGATAATGATAATGTTGA+TGG + chr3_3:55753154-55753173 Msa0459260:CDS 20.0%
!!! ATGATAATGATAATGTTGAT+GGG + chr3_3:55753155-55753174 Msa0459260:CDS 20.0%
!! AATTTCCTCAAAATAATACT+TGG + chr3_3:55753291-55753310 Msa0459260:intron 20.0%
!! CTAAAGTATAATTTCTTTGA+GGG - chr3_3:55753684-55753703 None:intergenic 20.0%
!! ACTAAAGTATAATTTCTTTG+AGG - chr3_3:55753685-55753704 None:intergenic 20.0%
!! GTTACTATCAATTAAAACTA+CGG + chr3_3:55753729-55753748 Msa0459260:intron 20.0%
!!! ACAAACATTTTTATGTTTGT+TGG + chr3_3:55753821-55753840 Msa0459260:intron 20.0%
!! ATATTCATATGTTTCACTAA+TGG + chr3_3:55754521-55754540 Msa0459260:intron 20.0%
!! TAATAAAAAACAACAGTTGA+GGG - chr3_3:55754820-55754839 None:intergenic 20.0%
!! ATAATAAAAAACAACAGTTG+AGG - chr3_3:55754821-55754840 None:intergenic 20.0%
!! AATTGCATTTCTAATGTTTA+TGG + chr3_3:55755455-55755474 Msa0459260:intron 20.0%
!! ATTGCATTTCTAATGTTTAT+GGG + chr3_3:55755456-55755475 Msa0459260:intron 20.0%
!!! TTTTTTTTTTTCAGTTCACA+AGG - chr3_3:55755586-55755605 None:intergenic 20.0%
!! TTCAACTTCACTAAAAATTA+TGG - chr3_3:55755816-55755835 None:intergenic 20.0%
!! TAATCTCAAATATCAAACTT+AGG - chr3_3:55755842-55755861 None:intergenic 20.0%
!!! TTTTTGCTTATATTTCATTC+AGG - chr3_3:55755914-55755933 None:intergenic 20.0%
!! GAATGAAATATAAGCAAAAA+CGG + chr3_3:55755914-55755933 Msa0459260:intron 20.0%
!! TCCTGAAATATAAACAAAAA+GGG - chr3_3:55756001-55756020 None:intergenic 20.0%
!!! ATAATGATAATTTTGATAGC+AGG + chr3_3:55756564-55756583 Msa0459260:intron 20.0%
!!! GAATCATTATAAACTAGTTT+CGG - chr3_3:55756833-55756852 None:intergenic 20.0%
!! TTCAGCAAGATAAAAAATAT+TGG - chr3_3:55756925-55756944 None:intergenic 20.0%
!!! TAAATTTCAGGTTTATCTTT+TGG + chr3_3:55757282-55757301 Msa0459260:intron 20.0%
!! ACATTTACATGAAAAACAAA+AGG - chr3_3:55757405-55757424 None:intergenic 20.0%
!!! TATTTGAACTGTTCTTATTT+TGG + chr3_3:55757521-55757540 Msa0459260:three_prime_UTR 20.0%
!! AAAATGAATGATGATGAGAA+TGG + chr3_3:55751832-55751851 Msa0459260:CDS 25.0%
! TCCAAAAAGTTATGAAATAG+CGG + chr3_3:55752704-55752723 Msa0459260:intron 25.0%
! AAACAATAGTGTGTATTTGA+AGG + chr3_3:55752815-55752834 Msa0459260:intron 25.0%
! AACAATAGTGTGTATTTGAA+GGG + chr3_3:55752816-55752835 Msa0459260:intron 25.0%
! CATTAGTCATTGTTTAAGTA+AGG + chr3_3:55752995-55753014 Msa0459260:intron 25.0%
!! TGATAATGATAATGTTGATG+GGG + chr3_3:55753156-55753175 Msa0459260:CDS 25.0%
!!! AATCTCCAAGTATTATTTTG+AGG - chr3_3:55753299-55753318 None:intergenic 25.0%
!! ATGCAATTACGTAAACTTTT+AGG - chr3_3:55753443-55753462 None:intergenic 25.0%
!! TTTCTCTTGTGTGTTTTATA+AGG + chr3_3:55753537-55753556 Msa0459260:intron 25.0%
! TTCAATAGTCATTGTTTAAG+TGG + chr3_3:55753609-55753628 Msa0459260:intron 25.0%
!! TTGTTTCTCCAATAGAAATT+CGG + chr3_3:55753962-55753981 Msa0459260:intron 25.0%
! CTCCAAAGAACTTAATTTAA+GGG - chr3_3:55754139-55754158 None:intergenic 25.0%
! TGTAATTATCTGTTCTAATC+TGG + chr3_3:55754482-55754501 Msa0459260:intron 25.0%
! GTAATTATCTGTTCTAATCT+GGG + chr3_3:55754483-55754502 Msa0459260:intron 25.0%
! TAATTATCTGTTCTAATCTG+GGG + chr3_3:55754484-55754503 Msa0459260:intron 25.0%
!!! ATGGTTCGTAATTTTAGTAA+TGG - chr3_3:55754654-55754673 None:intergenic 25.0%
! ATTCACTATATTTCTTATGC+AGG + chr3_3:55755177-55755196 Msa0459260:intron 25.0%
!! ATTATTTAAGGTTGATCTGA+AGG + chr3_3:55755337-55755356 Msa0459260:intron 25.0%
! TCTAATGTTTATGGGTAATT+TGG + chr3_3:55755464-55755483 Msa0459260:intron 25.0%
! CTAATGTTTATGGGTAATTT+GGG + chr3_3:55755465-55755484 Msa0459260:intron 25.0%
! TCTGAAAAAATTCAGTACAT+TGG + chr3_3:55755651-55755670 Msa0459260:intron 25.0%
! ACTTATTTGAACTTATCTAG+TGG - chr3_3:55755780-55755799 None:intergenic 25.0%
! GATGTACTTGATTAAAAATC+AGG + chr3_3:55755950-55755969 Msa0459260:intron 25.0%
!!! ACCCTTTTTGTTTATATTTC+AGG + chr3_3:55755997-55756016 Msa0459260:intron 25.0%
! GTCCTGAAATATAAACAAAA+AGG - chr3_3:55756002-55756021 None:intergenic 25.0%
!! TCAGGACTATATTCTAAAAA+CGG + chr3_3:55756015-55756034 Msa0459260:intron 25.0%
!!! TTTTTAAACAGACTTGTTTG+AGG + chr3_3:55756319-55756338 Msa0459260:intron 25.0%
!! TGCTCATTAAACAAAAGTAT+TGG + chr3_3:55756365-55756384 Msa0459260:intron 25.0%
!! AACATATATCTGAAGCTTTA+TGG + chr3_3:55756787-55756806 Msa0459260:intron 25.0%
!! TTATAAACTAGTTTCGGAAA+AGG - chr3_3:55756827-55756846 None:intergenic 25.0%
!! ACTAGTTTATAATGATTCAG+TGG + chr3_3:55756835-55756854 Msa0459260:intron 25.0%
! TCTTGCTGAAAAATCTATTA+TGG + chr3_3:55756935-55756954 Msa0459260:intron 25.0%
! TACAATGCATCAATTTGTAT+GGG - chr3_3:55757141-55757160 None:intergenic 25.0%
! ATACAATGCATCAATTTGTA+TGG - chr3_3:55757142-55757161 None:intergenic 25.0%
! ATAGAATTACAAACATAACC+TGG + chr3_3:55757160-55757179 Msa0459260:intron 25.0%
!! CAAATTGAGTAGTATTTTAC+TGG + chr3_3:55757206-55757225 Msa0459260:intron 25.0%
!!! TTTAGTTTTTAGCCATCTAT+AGG + chr3_3:55757448-55757467 Msa0459260:three_prime_UTR 25.0%
!!! TTAGTTTTTAGCCATCTATA+GGG + chr3_3:55757449-55757468 Msa0459260:three_prime_UTR 25.0%
!!! CTTTTCAATATGAGAGTATT+TGG - chr3_3:55757607-55757626 None:intergenic 25.0%
! ATATACACAAGATTACTAAC+AGG - chr3_3:55757645-55757664 None:intergenic 25.0%
AAACATCTCAAACTGGATAA+TGG + chr3_3:55750943-55750962 Msa0459260:CDS 30.0%
!!! GTTAGGGTTTTTTGAATTAG+GGG - chr3_3:55751001-55751020 None:intergenic 30.0%
!!! GGTTAGGGTTTTTTGAATTA+GGG - chr3_3:55751002-55751021 None:intergenic 30.0%
! GAAGTATTTGATTAATTCGC+CGG + chr3_3:55751225-55751244 Msa0459260:CDS 30.0%
! AATGATGATGATGTAGCAAT+GGG + chr3_3:55751589-55751608 Msa0459260:CDS 30.0%
GAGAAAGTGAATAATGATGT+TGG + chr3_3:55751715-55751734 Msa0459260:CDS 30.0%
! AATGATGTTGGTGAAAATCA+TGG + chr3_3:55751727-55751746 Msa0459260:CDS 30.0%
AAATCATGGCAATGATGAAT+CGG + chr3_3:55751903-55751922 Msa0459260:CDS 30.0%
TGTTGTAGAGTTGAAAAGTT+TGG + chr3_3:55752044-55752063 Msa0459260:intron 30.0%
GTTGTAGAGTTGAAAAGTTT+GGG + chr3_3:55752045-55752064 Msa0459260:intron 30.0%
TGAAAATACAAGATTCTCCT+TGG + chr3_3:55752303-55752322 Msa0459260:intron 30.0%
! GAGAGAAACTGAAGTTTTTA+CGG - chr3_3:55752371-55752390 None:intergenic 30.0%
CTTCCTTCTTTGATTCTTTA+CGG + chr3_3:55752390-55752409 Msa0459260:intron 30.0%
!! CGTAATGTTTTGAATTTTGG+TGG + chr3_3:55752517-55752536 Msa0459260:intron 30.0%
AACCTTTCATAAGATTTAGG+TGG + chr3_3:55752567-55752586 Msa0459260:intron 30.0%
AACCACCTAAATCTTATGAA+AGG - chr3_3:55752572-55752591 None:intergenic 30.0%
!! ACCGCTATTTCATAACTTTT+TGG - chr3_3:55752708-55752727 None:intergenic 30.0%
! TCTCTCTTGTGTGTTTTATA+AGG + chr3_3:55752921-55752940 Msa0459260:intron 30.0%
! CTCTCTTGTGTGTTTTATAA+GGG + chr3_3:55752922-55752941 Msa0459260:intron 30.0%
AAGGAGAAAATGAATGATGA+TGG + chr3_3:55753121-55753140 Msa0459260:CDS 30.0%
AGTTTACGTAATTGCATAAG+TGG + chr3_3:55753446-55753465 Msa0459260:intron 30.0%
TAATCATGAAACTCGCTATA+TGG + chr3_3:55753483-55753502 Msa0459260:intron 30.0%
AAACTCGCTATATGGAATTA+TGG + chr3_3:55753491-55753510 Msa0459260:intron 30.0%
AGTCATTGTTTAAGTGGTTA+TGG + chr3_3:55753615-55753634 Msa0459260:intron 30.0%
GTCATTGTTTAAGTGGTTAT+GGG + chr3_3:55753616-55753635 Msa0459260:intron 30.0%
AATAACAATCAAATAGGCGT+AGG - chr3_3:55753923-55753942 None:intergenic 30.0%
TTGTCTTTCCGAATTTCTAT+TGG - chr3_3:55753973-55753992 None:intergenic 30.0%
ATAGAAATTCGGAAAGACAA+TGG + chr3_3:55753973-55753992 Msa0459260:intron 30.0%
GTCCCTTAAATTAAGTTCTT+TGG + chr3_3:55754134-55754153 Msa0459260:CDS 30.0%
GCTCCAAAGAACTTAATTTA+AGG - chr3_3:55754140-55754159 None:intergenic 30.0%
! CATATCTTTTGTAGCCAATT+TGG - chr3_3:55754223-55754242 None:intergenic 30.0%
AATTATCTGTTCTAATCTGG+GGG + chr3_3:55754485-55754504 Msa0459260:intron 30.0%
GATTCAACACATTGCATTTA+TGG - chr3_3:55754739-55754758 None:intergenic 30.0%
AAATGCAATGTGTTGAATCA+TGG + chr3_3:55754740-55754759 Msa0459260:intron 30.0%
! TTATTTCCTTCTTTTTGCAG+TGG + chr3_3:55754950-55754969 Msa0459260:intron 30.0%
! TATTTCCTTCTTTTTGCAGT+GGG + chr3_3:55754951-55754970 Msa0459260:intron 30.0%
!! TTTTAACTAGTGAGCTATCA+TGG + chr3_3:55755082-55755101 Msa0459260:CDS 30.0%
CTATATTTCTTATGCAGGTT+TGG + chr3_3:55755182-55755201 Msa0459260:intron 30.0%
ATATGTTGCTGTAAAAGTCT+AGG - chr3_3:55755229-55755248 None:intergenic 30.0%
CGTTTAAAAAAGGAAGAATC+AGG - chr3_3:55755526-55755545 None:intergenic 30.0%
!!! TCTTCCTTTTTTAAACGAAG+AGG + chr3_3:55755529-55755548 Msa0459260:intron 30.0%
!!! CTTCCTTTTTTAAACGAAGA+GGG + chr3_3:55755530-55755549 Msa0459260:intron 30.0%
!!! TTCCTTTTTTAAACGAAGAG+GGG + chr3_3:55755531-55755550 Msa0459260:intron 30.0%
TCAAATAAGTCAATCCAATC+AGG + chr3_3:55755790-55755809 Msa0459260:intron 30.0%
ACTAAAAATTATGGCCTGAT+TGG - chr3_3:55755807-55755826 None:intergenic 30.0%
TCTCAAATATCAAACTTAGG+TGG - chr3_3:55755839-55755858 None:intergenic 30.0%
TGCTTATATTTCATTCAGGA+GGG - chr3_3:55755910-55755929 None:intergenic 30.0%
TTGCTTATATTTCATTCAGG+AGG - chr3_3:55755911-55755930 None:intergenic 30.0%
TGAGACTTGTCTTGAAAATT+TGG + chr3_3:55756184-55756203 Msa0459260:intron 30.0%
AGACAAGAATGCAGATATAA+AGG - chr3_3:55756702-55756721 None:intergenic 30.0%
! ATTGAGTAGTATTTTACTGG+TGG + chr3_3:55757209-55757228 Msa0459260:intron 30.0%
!! TGACTTGCTGTATAAATTTC+AGG + chr3_3:55757270-55757289 Msa0459260:intron 30.0%
! GTTTATCTTTTGGCGAATAT+GGG + chr3_3:55757292-55757311 Msa0459260:three_prime_UTR 30.0%
TACAATTCAGATCTCAAAGT+TGG - chr3_3:55757343-55757362 None:intergenic 30.0%
CAGTCTGAAAAATATATGTG+CGG + chr3_3:55757491-55757510 Msa0459260:three_prime_UTR 30.0%
TGAACGAAAACATCTCAAAC+TGG + chr3_3:55750936-55750955 Msa0459260:CDS 35.0%
!!! GTTTTTTGAATTAGGGGATC+GGG - chr3_3:55750995-55751014 None:intergenic 35.0%
!!! GGTTTTTTGAATTAGGGGAT+CGG - chr3_3:55750996-55751015 None:intergenic 35.0%
!!! GGGTTAGGGTTTTTTGAATT+AGG - chr3_3:55751003-55751022 None:intergenic 35.0%
!!! GGTTTTTTTGAGACGTGAAT+CGG - chr3_3:55751044-55751063 None:intergenic 35.0%
AAGATGTTCGAGGATTTGAA+GGG - chr3_3:55751122-55751141 None:intergenic 35.0%
AAATCTCTTCAAGATGTTCG+AGG - chr3_3:55751132-55751151 None:intergenic 35.0%
TTTCTATCACGAATGCGTTT+CGG + chr3_3:55751167-55751186 Msa0459260:CDS 35.0%
! TGAAGTGAAGAGGTTTTTGA+AGG + chr3_3:55751423-55751442 Msa0459260:CDS 35.0%
! GTTTCTTGATTTGATTGCGA+TGG + chr3_3:55751471-55751490 Msa0459260:CDS 35.0%
TAGAAGGTTGTTAGAAGGTT+TGG + chr3_3:55751552-55751571 Msa0459260:CDS 35.0%
AGAAGGTTGTTAGAAGGTTT+GGG + chr3_3:55751553-55751572 Msa0459260:CDS 35.0%
! GAATGATGATGATGTAGCAA+TGG + chr3_3:55751588-55751607 Msa0459260:CDS 35.0%
TAGAAGGTTGTTAGAAGGAT+TGG + chr3_3:55751687-55751706 Msa0459260:CDS 35.0%
AGAAGGTTGTTAGAAGGATT+GGG + chr3_3:55751688-55751707 Msa0459260:CDS 35.0%
TTGGTGAAAATCATGGTAAC+CGG + chr3_3:55751734-55751753 Msa0459260:CDS 35.0%
! TAGTGATGATGAGATGATGA+TGG + chr3_3:55751876-55751895 Msa0459260:CDS 35.0%
! AGTGATGATGAGATGATGAT+GGG + chr3_3:55751877-55751896 Msa0459260:CDS 35.0%
!! ATGATGATGGGTGAAAATCA+TGG + chr3_3:55751889-55751908 Msa0459260:CDS 35.0%
!! ATTTTAGTGTTTGCTGCGTA+AGG + chr3_3:55752079-55752098 Msa0459260:intron 35.0%
!!! TTTTAGGGTGAGAAGATGAA+AGG - chr3_3:55752418-55752437 None:intergenic 35.0%
! TTGAGAGAAGATGCGTTTTA+GGG - chr3_3:55752433-55752452 None:intergenic 35.0%
! TTTGAGAGAAGATGCGTTTT+AGG - chr3_3:55752434-55752453 None:intergenic 35.0%
ACGCATCTTCTCTCAAAAAA+CGG + chr3_3:55752437-55752456 Msa0459260:intron 35.0%
! TATCCCGCTATAGCATTTTT+GGG + chr3_3:55752743-55752762 Msa0459260:intron 35.0%
GTGTTTGTGAAATTGCTGAA+GGG + chr3_3:55753053-55753072 Msa0459260:CDS 35.0%
TGTTTGTGAAATTGCTGAAG+GGG + chr3_3:55753054-55753073 Msa0459260:CDS 35.0%
AAATCGTGGCAATGAACAAT+TGG + chr3_3:55753204-55753223 Msa0459260:CDS 35.0%
TAGTGCATATATCGAGAACA+TGG - chr3_3:55753585-55753604 None:intergenic 35.0%
GATAGTAACAACACCTTTGA+GGG - chr3_3:55753718-55753737 None:intergenic 35.0%
TGATAGTAACAACACCTTTG+AGG - chr3_3:55753719-55753738 None:intergenic 35.0%
AACATGACATTGATGTCATG+TGG - chr3_3:55753798-55753817 None:intergenic 35.0%
TGCACTAAAAACAAGACACA+AGG + chr3_3:55754017-55754036 Msa0459260:CDS 35.0%
GCACTAAAAACAAGACACAA+GGG + chr3_3:55754018-55754037 Msa0459260:CDS 35.0%
TTGCTGATGTGAAGAAACTT+CGG + chr3_3:55754109-55754128 Msa0459260:CDS 35.0%
!! TTCTTTGGAGCTAAAAGCAT+TGG + chr3_3:55754149-55754168 Msa0459260:CDS 35.0%
TGTAGCCAATTTGGATCTTA+CGG - chr3_3:55754214-55754233 None:intergenic 35.0%
CTACAAAAGATATGAATCGC+AGG + chr3_3:55754229-55754248 Msa0459260:CDS 35.0%
TTAGGAAGATCACTACTACA+AGG - chr3_3:55754366-55754385 None:intergenic 35.0%
GATCTTCCTAACTGTAGTAA+TGG + chr3_3:55754375-55754394 Msa0459260:CDS 35.0%
GACGATCATTACTATAGTTG+GGG - chr3_3:55754407-55754426 None:intergenic 35.0%
CGACGATCATTACTATAGTT+GGG - chr3_3:55754408-55754427 None:intergenic 35.0%
ATGTTTCACTAATGGCCTAA+AGG + chr3_3:55754529-55754548 Msa0459260:intron 35.0%
TTTACAAGACAGCATCCTTT+AGG - chr3_3:55754547-55754566 None:intergenic 35.0%
! GCAGTATTTAAAACAGTGGT+GGG - chr3_3:55754629-55754648 None:intergenic 35.0%
! AGCAGTATTTAAAACAGTGG+TGG - chr3_3:55754630-55754649 None:intergenic 35.0%
TACGAACCATTACACGAAAT+TGG + chr3_3:55754664-55754683 Msa0459260:intron 35.0%
!! TTGTGTTTGGTGGTTTCTTT+TGG + chr3_3:55754863-55754882 Msa0459260:intron 35.0%
! CATTTCCTTTTCTTCCTTCT+TGG - chr3_3:55755012-55755031 None:intergenic 35.0%
CAAGAAGGAAGAAAAGGAAA+TGG + chr3_3:55755010-55755029 Msa0459260:CDS 35.0%
CGGATAGTTAATGAACTTGT+TGG + chr3_3:55755124-55755143 Msa0459260:intron 35.0%
ACAAGTGGAGAAATATGATG+CGG + chr3_3:55755360-55755379 Msa0459260:three_prime_UTR 35.0%
CAATACCTTCCTAGGATATA+TGG - chr3_3:55755413-55755432 None:intergenic 35.0%
CAAGAAAACAATACCTTCCT+AGG - chr3_3:55755421-55755440 None:intergenic 35.0%
TACCCCTCTTCGTTTAAAAA+AGG - chr3_3:55755536-55755555 None:intergenic 35.0%
AAAAAATAGTACTCCGACCA+GGG - chr3_3:55756429-55756448 None:intergenic 35.0%
AAAAAAATAGTACTCCGACC+AGG - chr3_3:55756430-55756449 None:intergenic 35.0%
CACAGTAACTGTACAAAACA+CGG - chr3_3:55756478-55756497 None:intergenic 35.0%
! TTTTGTACAGTTACTGTGTC+AGG + chr3_3:55756480-55756499 Msa0459260:intron 35.0%
TTTGTACAGTTACTGTGTCA+GGG + chr3_3:55756481-55756500 Msa0459260:intron 35.0%
TGGATTCTAACATGGACTTT+GGG - chr3_3:55756665-55756684 None:intergenic 35.0%
ATGCAGATATAAAGGAGAAG+TGG - chr3_3:55756694-55756713 None:intergenic 35.0%
ATATCTGCATTCTTGTCTCA+AGG + chr3_3:55756704-55756723 Msa0459260:three_prime_UTR 35.0%
TATCTGCATTCTTGTCTCAA+GGG + chr3_3:55756705-55756724 Msa0459260:three_prime_UTR 35.0%
!!! GTATTGAGCTTTTAAGATGC+AGG - chr3_3:55756903-55756922 None:intergenic 35.0%
CTCTACATGGAATGGTTAAA+TGG - chr3_3:55756969-55756988 None:intergenic 35.0%
CTATAAAGCTCTACATGGAA+TGG - chr3_3:55756977-55756996 None:intergenic 35.0%
ACATGCTATAAAGCTCTACA+TGG - chr3_3:55756982-55757001 None:intergenic 35.0%
AAACAGAAGAGAGTTATGAC+TGG + chr3_3:55757015-55757034 Msa0459260:intron 35.0%
! TGTTGTGCATGAAATTTTCG+TGG + chr3_3:55757049-55757068 Msa0459260:intron 35.0%
! GAAATTTTCGTGGCAAGTTT+AGG + chr3_3:55757059-55757078 Msa0459260:intron 35.0%
! ACTCAATTTGTTCAGCAGTT+AGG - chr3_3:55757196-55757215 None:intergenic 35.0%
! GGTTTATCTTTTGGCGAATA+TGG + chr3_3:55757291-55757310 Msa0459260:intron 35.0%
! ATTCAGATCTCAAAGTTGGT+AGG - chr3_3:55757339-55757358 None:intergenic 35.0%
GATTAGCAATACCCTATAGA+TGG - chr3_3:55757463-55757482 None:intergenic 35.0%
TGTCTCTTCTAACATGAGTT+GGG + chr3_3:55757562-55757581 Msa0459260:three_prime_UTR 35.0%
!! GAAACTTGTTTTCTTCCTTG+TGG + chr3_3:55757670-55757689 Msa0459260:three_prime_UTR 35.0%
CAAGATGTTCGAGGATTTGA+AGG - chr3_3:55751123-55751142 None:intergenic 40.0%
GTATTTGATTAATTCGCCGG+AGG + chr3_3:55751228-55751247 Msa0459260:CDS 40.0%
! TCCGTCTGGTGAGTATTTTT+CGG + chr3_3:55751252-55751271 Msa0459260:CDS 40.0%
GTTGAATACAAGGAGAGATG+CGG + chr3_3:55751396-55751415 Msa0459260:CDS 40.0%
TTTGATTGCGATGGTTTCGA+AGG + chr3_3:55751480-55751499 Msa0459260:CDS 40.0%
TTGATTGCGATGGTTTCGAA+GGG + chr3_3:55751481-55751500 Msa0459260:CDS 40.0%
TGTTTGTGAAAATGCTGCTG+AGG + chr3_3:55751525-55751544 Msa0459260:CDS 40.0%
GTTTGTGAAAATGCTGCTGA+GGG + chr3_3:55751526-55751545 Msa0459260:CDS 40.0%
TTTGTGAAAATGCTGCTGAG+GGG + chr3_3:55751527-55751546 Msa0459260:CDS 40.0%
GAAGGTTGTTAGAAGGTTTG+GGG + chr3_3:55751554-55751573 Msa0459260:CDS 40.0%
TGTTAGAAGGTTTGGGGAAA+AGG + chr3_3:55751560-55751579 Msa0459260:CDS 40.0%
AATGGGTGAAAAGATTGCGA+TGG + chr3_3:55751606-55751625 Msa0459260:CDS 40.0%
AAAGATTGCGATGGTTTCGA+AGG + chr3_3:55751615-55751634 Msa0459260:CDS 40.0%
AAGATTGCGATGGTTTCGAA+GGG + chr3_3:55751616-55751635 Msa0459260:CDS 40.0%
TGTTTGTGAAAATGCTGCTG+AGG + chr3_3:55751525-55751544 Msa0459260:CDS 40.0%
GTTTGTGAAAATGCTGCTGA+GGG + chr3_3:55751526-55751545 Msa0459260:CDS 40.0%
TTTGTGAAAATGCTGCTGAG+GGG + chr3_3:55751527-55751546 Msa0459260:CDS 40.0%
GAAGGTTGTTAGAAGGATTG+GGG + chr3_3:55751689-55751708 Msa0459260:CDS 40.0%
AAATCATGGTAACCGGCAAT+TGG + chr3_3:55751741-55751760 Msa0459260:CDS 40.0%
AATGGGAGAGTAGAAGGTTT+AGG + chr3_3:55751802-55751821 Msa0459260:CDS 40.0%
ATGGGAGAGTAGAAGGTTTA+GGG + chr3_3:55751803-55751822 Msa0459260:CDS 40.0%
TACTTCTGTTGATGCGAATC+AGG + chr3_3:55751939-55751958 Msa0459260:CDS 40.0%
! GCATCTAGAATGGGAGATAA+AGG + chr3_3:55751982-55752001 Msa0459260:CDS 40.0%
ATTCTCGGCAGAGTAGTTAA+TGG + chr3_3:55752127-55752146 Msa0459260:intron 40.0%
! CTATCCCGCTATAGCATTTT+TGG + chr3_3:55752742-55752761 Msa0459260:intron 40.0%
GGTTTGAGTAGCTACATAAG+TGG + chr3_3:55752837-55752856 Msa0459260:intron 40.0%
ATTTCACAAACACCTTCAGG+AGG - chr3_3:55753046-55753065 None:intergenic 40.0%
GCAATTTCACAAACACCTTC+AGG - chr3_3:55753049-55753068 None:intergenic 40.0%
GGTGTTTGTGAAATTGCTGA+AGG + chr3_3:55753052-55753071 Msa0459260:intron 40.0%
GTTTGTGAAATTGCTGAAGG+GGG + chr3_3:55753055-55753074 Msa0459260:CDS 40.0%
! AAGATTTGAGGAAGCGTGAT+GGG + chr3_3:55753080-55753099 Msa0459260:CDS 40.0%
!! GATGATGTAGCATTGATGGA+TGG + chr3_3:55753181-55753200 Msa0459260:CDS 40.0%
!! ACCTCTGGAATGAGAGATAA+AGG + chr3_3:55753241-55753260 Msa0459260:CDS 40.0%
ACCTTTATCTCTCATTCCAG+AGG - chr3_3:55753245-55753264 None:intergenic 40.0%
! AGTTAAACTCTCTGGTGATG+AGG + chr3_3:55754041-55754060 Msa0459260:CDS 40.0%
TGCTGATGTGAAGAAACTTC+GGG + chr3_3:55754110-55754129 Msa0459260:CDS 40.0%
TGAAGCCGTAAGATCCAAAT+TGG + chr3_3:55754206-55754225 Msa0459260:CDS 40.0%
!! ATGTTCACTCTGCTTTTCAC+TGG - chr3_3:55754259-55754278 None:intergenic 40.0%
TTGGCAACATTGGCATCATT+AGG - chr3_3:55754330-55754349 None:intergenic 40.0%
TAATGATGCCAATGTTGCCA+AGG + chr3_3:55754329-55754348 Msa0459260:CDS 40.0%
AGAAATCTCCTTGGCAACAT+TGG - chr3_3:55754340-55754359 None:intergenic 40.0%
ACAAGGAACAGAAATCTCCT+TGG - chr3_3:55754349-55754368 None:intergenic 40.0%
CGACTACCATTACTACAGTT+AGG - chr3_3:55754384-55754403 None:intergenic 40.0%
GCGACGATCATTACTATAGT+TGG - chr3_3:55754409-55754428 None:intergenic 40.0%
AAGTCATGCTCAGACATACA+AGG + chr3_3:55754449-55754468 Msa0459260:CDS 40.0%
! GGCAGCAGTATTTAAAACAG+TGG - chr3_3:55754633-55754652 None:intergenic 40.0%
TCAACGCCAATTTCGTGTAA+TGG - chr3_3:55754673-55754692 None:intergenic 40.0%
GGTTAAGAGTCTCTTGTGTT+TGG + chr3_3:55754850-55754869 Msa0459260:intron 40.0%
TAAGAGTCTCTTGTGTTTGG+TGG + chr3_3:55754853-55754872 Msa0459260:intron 40.0%
!! GTGGTTTCTTTTGGTTGTTG+TGG + chr3_3:55754872-55754891 Msa0459260:intron 40.0%
ATCATCCCACTGCAAAAAGA+AGG - chr3_3:55754959-55754978 None:intergenic 40.0%
! GAAAAGGAAATGGACTTCCT+TGG + chr3_3:55755020-55755039 Msa0459260:CDS 40.0%
CTTGGAAGAAGAGACACTAA+GGG + chr3_3:55755038-55755057 Msa0459260:CDS 40.0%
GATGCAGGTTATACTTGAAG+CGG + chr3_3:55755104-55755123 Msa0459260:intron 40.0%
TTCTTATGCAGGTTTGGAGA+AGG + chr3_3:55755188-55755207 Msa0459260:intron 40.0%
CTTCCTAGGATATATGGACA+GGG - chr3_3:55755407-55755426 None:intergenic 40.0%
! TTTTAAACGAAGAGGGGTAG+AGG + chr3_3:55755537-55755556 Msa0459260:intron 40.0%
CTGAACTTGACGATGTTTCA+AGG + chr3_3:55756068-55756087 Msa0459260:intron 40.0%
! CCAAGACTTTAGGAATAGTG+GGG - chr3_3:55756405-55756424 None:intergenic 40.0%
! GCCAAGACTTTAGGAATAGT+GGG - chr3_3:55756406-55756425 None:intergenic 40.0%
AAAAATAGTACTCCGACCAG+GGG - chr3_3:55756428-55756447 None:intergenic 40.0%
ATCCAACTAGTGAGATAGTG+AGG + chr3_3:55756620-55756639 Msa0459260:three_prime_UTR 40.0%
AACTAGTGAGATAGTGAGGT+GGG + chr3_3:55756624-55756643 Msa0459260:three_prime_UTR 40.0%
GTGGATTCTAACATGGACTT+TGG - chr3_3:55756666-55756685 None:intergenic 40.0%
! GGTTTGAGTGGATTCTAACA+TGG - chr3_3:55756673-55756692 None:intergenic 40.0%
TAAAGGAGAAGTGGTTTGAG+TGG - chr3_3:55756685-55756704 None:intergenic 40.0%
ACTAAGGTTAGACTAAGTGC+AGG + chr3_3:55756744-55756763 Msa0459260:intron 40.0%
! ATCTGAAGCTTTATGGCTGT+TGG + chr3_3:55756794-55756813 Msa0459260:intron 40.0%
GGAATGGTTAAATGGCAAGT+AGG - chr3_3:55756961-55756980 None:intergenic 40.0%
CAGTTAGGAACTACAAAACC+AGG - chr3_3:55757181-55757200 None:intergenic 40.0%
!! GTAGTATTTTACTGGTGGTG+TGG + chr3_3:55757214-55757233 Msa0459260:intron 40.0%
! GCAAGTCAGTATACCTTTTC+TGG - chr3_3:55757258-55757277 None:intergenic 40.0%
CGAATATGGGCAACTTGAAA+GGG + chr3_3:55757305-55757324 Msa0459260:three_prime_UTR 40.0%
TCATGTTAGAAGAGACAGTC+AGG - chr3_3:55757559-55757578 None:intergenic 40.0%
CTGTCTCTTCTAACATGAGT+TGG + chr3_3:55757561-55757580 Msa0459260:three_prime_UTR 40.0%
GAAGATGAGTGAATACCACA+AGG - chr3_3:55757688-55757707 None:intergenic 40.0%
TTGAATTAGGGGATCGGGAA+CGG - chr3_3:55750990-55751009 None:intergenic 45.0%
!! GATTGAAGCGTTGAGGATGT+GGG - chr3_3:55751089-55751108 None:intergenic 45.0%
!! AGATTGAAGCGTTGAGGATG+TGG - chr3_3:55751090-55751109 None:intergenic 45.0%
GAGGATTTGAAGGGAGACTT+CGG - chr3_3:55751113-55751132 None:intergenic 45.0%
TGCTGTTGCGGTTGAATGTA+CGG + chr3_3:55751201-55751220 Msa0459260:CDS 45.0%
GCCGAAAAATACTCACCAGA+CGG - chr3_3:55751256-55751275 None:intergenic 45.0%
!! GTCTGGTGAGTATTTTTCGG+CGG + chr3_3:55751255-55751274 Msa0459260:CDS 45.0%
!! AGTATTTTTCGGCGGTGAAG+AGG + chr3_3:55751263-55751282 Msa0459260:CDS 45.0%
! AAGAGATTGAAGGTGCGCTT+TGG + chr3_3:55751344-55751363 Msa0459260:CDS 45.0%
! AGAGATTGAAGGTGCGCTTT+GGG + chr3_3:55751345-55751364 Msa0459260:CDS 45.0%
ATGCGGTTGTTGAAGTGAAG+AGG + chr3_3:55751413-55751432 Msa0459260:CDS 45.0%
!! AGAGGTTTTTGAAGGAAGCG+TGG + chr3_3:55751431-55751450 Msa0459260:CDS 45.0%
!! GAGGTTTTTGAAGGAAGCGT+GGG + chr3_3:55751432-55751451 Msa0459260:CDS 45.0%
!! AGGTTTTTGAAGGAAGCGTG+GGG + chr3_3:55751433-55751452 Msa0459260:CDS 45.0%
TGATTGCGATGGTTTCGAAG+GGG + chr3_3:55751482-55751501 Msa0459260:CDS 45.0%
! GCATTTTCACAAACACCTCC+CGG - chr3_3:55751520-55751539 None:intergenic 45.0%
GGGAGTAGAAGGTTGTTAGA+AGG + chr3_3:55751547-55751566 Msa0459260:CDS 45.0%
AGATTGCGATGGTTTCGAAG+GGG + chr3_3:55751617-55751636 Msa0459260:CDS 45.0%
! GCATTTTCACAAACACCTCC+TGG - chr3_3:55751520-55751539 None:intergenic 45.0%
GGGAGTAGAAGGTTGTTAGA+AGG + chr3_3:55751547-55751566 Msa0459260:CDS 45.0%
AACCGGCAATTGGAAGAGAA+TGG + chr3_3:55751751-55751770 Msa0459260:CDS 45.0%
AGCCATTCTCTTCCAATTGC+CGG - chr3_3:55751756-55751775 None:intergenic 45.0%
GCAATTGGAAGAGAATGGCT+CGG + chr3_3:55751756-55751775 Msa0459260:CDS 45.0%
CAATTGGAAGAGAATGGCTC+GGG + chr3_3:55751757-55751776 Msa0459260:CDS 45.0%
GATGAATCGGAAGAGAGAGT+TGG + chr3_3:55751916-55751935 Msa0459260:CDS 45.0%
TGTTGATGCGAATCAGGAAG+TGG + chr3_3:55751945-55751964 Msa0459260:CDS 45.0%
! CAAGCTGGTGCATCTAGAAT+GGG + chr3_3:55751973-55751992 Msa0459260:CDS 45.0%
! GTTTGCTGCGTAAGGTTTGA+TGG + chr3_3:55752087-55752106 Msa0459260:intron 45.0%
TATCTCATAACGCTACGCCA+TGG - chr3_3:55752217-55752236 None:intergenic 45.0%
GCGCCGTAAAGAATCAAAGA+AGG - chr3_3:55752396-55752415 None:intergenic 45.0%
GAGCCCAAAAATGCTATAGC+GGG - chr3_3:55752749-55752768 None:intergenic 45.0%
CGAGCCCAAAAATGCTATAG+CGG - chr3_3:55752750-55752769 None:intergenic 45.0%
!! CGCTATAGCATTTTTGGGCT+CGG + chr3_3:55752748-55752767 Msa0459260:intron 45.0%
! GAAGATTTGAGGAAGCGTGA+TGG + chr3_3:55753079-55753098 Msa0459260:CDS 45.0%
TGATGGGAGGTTAGAAGGTT+TGG + chr3_3:55753096-55753115 Msa0459260:CDS 45.0%
GATGGGAGGTTAGAAGGTTT+GGG + chr3_3:55753097-55753116 Msa0459260:CDS 45.0%
GAGGTTAGAAGGTTTGGGAA+AGG + chr3_3:55753102-55753121 Msa0459260:CDS 45.0%
! GGACGATGATGTAGCATTGA+TGG + chr3_3:55753177-55753196 Msa0459260:CDS 45.0%
! GCATTGATGGATGGAAATCG+TGG + chr3_3:55753190-55753209 Msa0459260:CDS 45.0%
AGTCACACACTTTCCCTCAA+AGG + chr3_3:55753702-55753721 Msa0459260:intron 45.0%
TCTTATTCCCTACCCATTGC+AGG + chr3_3:55753765-55753784 Msa0459260:intron 45.0%
CACAAGGGAGTTAAACTCTC+TGG + chr3_3:55754033-55754052 Msa0459260:CDS 45.0%
TCAGATGTGTGCAATGCATC+AGG - chr3_3:55754189-55754208 None:intergenic 45.0%
TATCTGTTCTAATCTGGGGG+TGG + chr3_3:55754488-55754507 Msa0459260:intron 45.0%
!! TCATGATGCTTGCTGTCTCT+TGG + chr3_3:55754578-55754597 Msa0459260:intron 45.0%
TGACTGACTGCACTTATGTG+CGG + chr3_3:55754701-55754720 Msa0459260:intron 45.0%
TATGCCACCACCAGATGTAT+TGG + chr3_3:55754771-55754790 Msa0459260:intron 45.0%
AATCCACAGGCCAATACATC+TGG - chr3_3:55754784-55754803 None:intergenic 45.0%
TGAACATCTGCAGAATCCAC+AGG - chr3_3:55754797-55754816 None:intergenic 45.0%
! CTTCTTGGCTGACTTTGTTG+CGG - chr3_3:55754997-55755016 None:intergenic 45.0%
GTCAGCCAAGAAGGAAGAAA+AGG + chr3_3:55755004-55755023 Msa0459260:CDS 45.0%
CCTTAGTGTCTCTTCTTCCA+AGG - chr3_3:55755040-55755059 None:intergenic 45.0%
CCTTGGAAGAAGAGACACTA+AGG + chr3_3:55755037-55755056 Msa0459260:CDS 45.0%
TAGTGAGCTATCATGGATGC+AGG + chr3_3:55755089-55755108 Msa0459260:CDS 45.0%
! AGGTTGATCTGAAGGACAAG+TGG + chr3_3:55755345-55755364 Msa0459260:intron 45.0%
CATCCCTGTCCATATATCCT+AGG + chr3_3:55755401-55755420 Msa0459260:three_prime_UTR 45.0%
CCTTCCTAGGATATATGGAC+AGG - chr3_3:55755408-55755427 None:intergenic 45.0%
CCTGTCCATATATCCTAGGA+AGG + chr3_3:55755405-55755424 Msa0459260:three_prime_UTR 45.0%
! TAGGAATAGTGGGGTAGCTT+TGG - chr3_3:55756396-55756415 None:intergenic 45.0%
CCCCACTATTCCTAAAGTCT+TGG + chr3_3:55756402-55756421 Msa0459260:intron 45.0%
! GGCCAAGACTTTAGGAATAG+TGG - chr3_3:55756407-55756426 None:intergenic 45.0%
! TTGATAGCAGGTTCGAGCTA+TGG + chr3_3:55756576-55756595 Msa0459260:intron 45.0%
CACCTCACTATCTCACTAGT+TGG - chr3_3:55756625-55756644 None:intergenic 45.0%
CAACTAGTGAGATAGTGAGG+TGG + chr3_3:55756623-55756642 Msa0459260:three_prime_UTR 45.0%
ATTCTTGTCTCAAGGGCTCA+GGG + chr3_3:55756712-55756731 Msa0459260:three_prime_UTR 45.0%
CTCAGGGCACATCTTAACTA+AGG + chr3_3:55756728-55756747 Msa0459260:three_prime_UTR 45.0%
!! GTATTTTACTGGTGGTGTGG+AGG + chr3_3:55757217-55757236 Msa0459260:intron 45.0%
GTGCTGAATCTTGCCAGAAA+AGG + chr3_3:55757242-55757261 Msa0459260:intron 45.0%
GCGAATATGGGCAACTTGAA+AGG + chr3_3:55757304-55757323 Msa0459260:three_prime_UTR 45.0%
! TCTAACATGAGTTGGGCGAT+TGG + chr3_3:55757569-55757588 Msa0459260:three_prime_UTR 45.0%
!! TGAGAGTATTTGGCAGCACT+AGG - chr3_3:55757597-55757616 None:intergenic 45.0%
GGAGAGTGGAAGTAGGGTTA+GGG - chr3_3:55751017-55751036 None:intergenic 50.0%
CTAACCCTACTTCCACTCTC+CGG + chr3_3:55751016-55751035 Msa0459260:CDS 50.0%
GGATGTGGGATTGAAGAACG+CGG - chr3_3:55751075-55751094 None:intergenic 50.0%
!! CTTCGGAGATTGAAGCGTTG+AGG - chr3_3:55751096-55751115 None:intergenic 50.0%
GAAGAGATTTACCGCGACGA+CGG + chr3_3:55751142-55751161 Msa0459260:CDS 50.0%
TGATAGAAACTCCGTCGTCG+CGG - chr3_3:55751156-55751175 None:intergenic 50.0%
! GAGTGCTTACTGTGCTGTTG+CGG + chr3_3:55751189-55751208 Msa0459260:CDS 50.0%
TTTCGGCGGTGAAGAGGATT+TGG + chr3_3:55751269-55751288 Msa0459260:CDS 50.0%
TGAAGAGGATTTGGAGGGGA+AGG + chr3_3:55751278-55751297 Msa0459260:CDS 50.0%
!! AAGGTGCGCTTTGGGATGTT+AGG + chr3_3:55751353-55751372 Msa0459260:CDS 50.0%
!! AGGTGCGCTTTGGGATGTTA+GGG + chr3_3:55751354-55751373 Msa0459260:CDS 50.0%
TGTTAGGGTTGCAGAGAGGT+TGG + chr3_3:55751369-55751388 Msa0459260:CDS 50.0%
!! GGTTGGTGGGGTTGAATACA+AGG + chr3_3:55751386-55751405 Msa0459260:CDS 50.0%
!! GGTTTTTGAAGGAAGCGTGG+GGG + chr3_3:55751434-55751453 Msa0459260:CDS 50.0%
! GAAGGGGAATGGTTTGTGTC+CGG + chr3_3:55751498-55751517 Msa0459260:CDS 50.0%
! AAGGGGAATGGTTTGTGTCC+GGG + chr3_3:55751499-55751518 Msa0459260:CDS 50.0%
! AAGGGGAATGGTTTGTGTCC+AGG + chr3_3:55751499-55751518 Msa0459260:CDS 50.0%
! GAATGTCGAGGAGGCGTAAT+GGG + chr3_3:55751785-55751804 Msa0459260:CDS 50.0%
! AGGCGTAATGGGAGAGTAGA+AGG + chr3_3:55751796-55751815 Msa0459260:CDS 50.0%
GCAAGCTGGTGCATCTAGAA+TGG + chr3_3:55751972-55751991 Msa0459260:CDS 50.0%
CTCGGCAGAGTAGTTAATGG+TGG + chr3_3:55752130-55752149 Msa0459260:intron 50.0%
TGGCTTATTGCATAGCGGTC+CGG - chr3_3:55752197-55752216 None:intergenic 50.0%
GACCGCTATGCAATAAGCCA+TGG + chr3_3:55752197-55752216 Msa0459260:intron 50.0%
CGCCATGGCTTATTGCATAG+CGG - chr3_3:55752202-55752221 None:intergenic 50.0%
GGCGTAGCGTTATGAGATAG+CGG + chr3_3:55752218-55752237 Msa0459260:intron 50.0%
GAAATAGCGGTCATAGCGCT+AGG + chr3_3:55752717-55752736 Msa0459260:intron 50.0%
TATGAGGGTTTGCCTCCTGA+AGG + chr3_3:55753031-55753050 Msa0459260:intron 50.0%
CTGAAGGGGGTGAAGATTTG+AGG + chr3_3:55753068-55753087 Msa0459260:CDS 50.0%
! ATTTGAGGAAGCGTGATGGG+AGG + chr3_3:55753083-55753102 Msa0459260:CDS 50.0%
! AAGCGTGATGGGAGGTTAGA+AGG + chr3_3:55753091-55753110 Msa0459260:CDS 50.0%
CAACAGTCCTGCAATGGGTA+GGG - chr3_3:55753775-55753794 None:intergenic 50.0%
TGTGGCAACAGTCCTGCAAT+GGG - chr3_3:55753780-55753799 None:intergenic 50.0%
ATGTGGCAACAGTCCTGCAA+TGG - chr3_3:55753781-55753800 None:intergenic 50.0%
GTGTGCAATGCATCAGGAAG+AGG - chr3_3:55754183-55754202 None:intergenic 50.0%
!! TCACTCTGCTTTTCACTGGC+TGG - chr3_3:55754255-55754274 None:intergenic 50.0%
! TTGCCCGTCGCATTAAGTTG+GGG - chr3_3:55754431-55754450 None:intergenic 50.0%
CTTGCCCGTCGCATTAAGTT+GGG - chr3_3:55754432-55754451 None:intergenic 50.0%
ACTTGCCCGTCGCATTAAGT+TGG - chr3_3:55754433-55754452 None:intergenic 50.0%
!! TGATGCTTGCTGTCTCTTGG+AGG + chr3_3:55754581-55754600 Msa0459260:intron 50.0%
CGCAACAAAGTCAGCCAAGA+AGG + chr3_3:55754995-55755014 Msa0459260:CDS 50.0%
GAAGAAGAGACACTAAGGGC+TGG + chr3_3:55755042-55755061 Msa0459260:CDS 50.0%
GCAGGTTTGGAGAAGGAAAC+TGG + chr3_3:55755195-55755214 Msa0459260:intron 50.0%
GGTTTGGAGAAGGAAACTGG+AGG + chr3_3:55755198-55755217 Msa0459260:intron 50.0%
ATTCCTAAAGTCTTGGCCCC+TGG + chr3_3:55756409-55756428 Msa0459260:intron 50.0%
TAGTGAGATAGTGAGGTGGG+AGG + chr3_3:55756627-55756646 Msa0459260:three_prime_UTR 50.0%
!! ATGGACTTTGGGTTGCCAGT+TGG - chr3_3:55756654-55756673 None:intergenic 50.0%
CATTCTTGTCTCAAGGGCTC+AGG + chr3_3:55756711-55756730 Msa0459260:three_prime_UTR 50.0%
! GATCGGGAACGGTGGTGTTA+CGG - chr3_3:55750979-55750998 None:intergenic 55.0%
AATTAGGGGATCGGGAACGG+TGG - chr3_3:55750987-55751006 None:intergenic 55.0%
CGGAGAGTGGAAGTAGGGTT+AGG - chr3_3:55751018-55751037 None:intergenic 55.0%
! TTTGAGACGTGAATCGGCGC+CGG - chr3_3:55751038-55751057 None:intergenic 55.0%
TTGAAGAACGCGGAGGAGGA+GGG - chr3_3:55751065-55751084 None:intergenic 55.0%
ATTGAAGAACGCGGAGGAGG+AGG - chr3_3:55751066-55751085 None:intergenic 55.0%
TGTGGGATTGAAGAACGCGG+AGG - chr3_3:55751072-55751091 None:intergenic 55.0%
TACTCACCAGACGGATCCTC+CGG - chr3_3:55751247-55751266 None:intergenic 55.0%
GGCGGTGAAGAGGATTTGGA+GGG + chr3_3:55751273-55751292 Msa0459260:CDS 55.0%
GCGGTGAAGAGGATTTGGAG+GGG + chr3_3:55751274-55751293 Msa0459260:CDS 55.0%
AGGATTTGGAGGGGAAGGAG+AGG + chr3_3:55751283-55751302 Msa0459260:CDS 55.0%
GGATTTGGAGGGGAAGGAGA+GGG + chr3_3:55751284-55751303 Msa0459260:CDS 55.0%
! TGGTGTCGGATGGGTTTGTG+CGG + chr3_3:55751314-55751333 Msa0459260:CDS 55.0%
GGGATGTTAGGGTTGCAGAG+AGG + chr3_3:55751365-55751384 Msa0459260:CDS 55.0%
TAGGGTTGCAGAGAGGTTGG+TGG + chr3_3:55751372-55751391 Msa0459260:CDS 55.0%
! AGGGTTGCAGAGAGGTTGGT+GGG + chr3_3:55751373-55751392 Msa0459260:CDS 55.0%
! AAGGAAGCGTGGGGGAGTAT+GGG + chr3_3:55751442-55751461 Msa0459260:CDS 55.0%
GCGATGGTTTCGAAGGGGAA+TGG + chr3_3:55751487-55751506 Msa0459260:CDS 55.0%
ATGCTGCTGAGGGGAGTAGA+AGG + chr3_3:55751536-55751555 Msa0459260:CDS 55.0%
GCGATGGTTTCGAAGGGGAA+TGG + chr3_3:55751487-55751506 Msa0459260:CDS 55.0%
! GGGAATGGTTTGTGTCCAGG+AGG + chr3_3:55751637-55751656 Msa0459260:CDS 55.0%
ATGCTGCTGAGGGGAGTAGA+AGG + chr3_3:55751536-55751555 Msa0459260:CDS 55.0%
! TTGGAAGAGAATGGCTCGGG+TGG + chr3_3:55751760-55751779 Msa0459260:CDS 55.0%
! GGAATGTCGAGGAGGCGTAA+TGG + chr3_3:55751784-55751803 Msa0459260:CDS 55.0%
CAGGAAGTGGAACAGCAAGC+TGG + chr3_3:55751958-55751977 Msa0459260:CDS 55.0%
GGCTGCTATAGCGCTGCTAT+TGG - chr3_3:55752156-55752175 None:intergenic 55.0%
AGCAGCGCAACACTGCATAG+CGG + chr3_3:55752247-55752266 Msa0459260:intron 55.0%
GAAGCGATAGTTCGCACCTC+TGG + chr3_3:55753226-55753245 Msa0459260:CDS 55.0%
GCAACAGTCCTGCAATGGGT+AGG - chr3_3:55753776-55753795 None:intergenic 55.0%
! TCTCTGGTGATGAGGAAGCG+AGG + chr3_3:55754049-55754068 Msa0459260:CDS 55.0%
GTCGCCCCAACTTAATGCGA+CGG + chr3_3:55754424-55754443 Msa0459260:CDS 55.0%
TCGCCCCAACTTAATGCGAC+GGG + chr3_3:55754425-55754444 Msa0459260:CDS 55.0%
CAGGCCAATACATCTGGTGG+TGG - chr3_3:55754778-55754797 None:intergenic 55.0%
CCACAGGCCAATACATCTGG+TGG - chr3_3:55754781-55754800 None:intergenic 55.0%
! CCACCAGATGTATTGGCCTG+TGG + chr3_3:55754778-55754797 Msa0459260:intron 55.0%
CTAAAGTCTTGGCCCCTGGT+CGG + chr3_3:55756413-55756432 Msa0459260:intron 55.0%
!! GAACGGTGGTGTTACGGAGG+AGG - chr3_3:55750973-55750992 None:intergenic 60.0%
GGGATTGAAGAACGCGGAGG+AGG - chr3_3:55751069-55751088 None:intergenic 60.0%
AATTCGCCGGAGGATCCGTC+TGG + chr3_3:55751238-55751257 Msa0459260:CDS 60.0%
CGGCGGTGAAGAGGATTTGG+AGG + chr3_3:55751272-55751291 Msa0459260:CDS 60.0%
!! GAGAGGGAGTGGGTTGGTGT+CGG + chr3_3:55751300-55751319 Msa0459260:CDS 60.0%
!! GGAGTGGGTTGGTGTCGGAT+GGG + chr3_3:55751305-55751324 Msa0459260:CDS 60.0%
! TGTCGGATGGGTTTGTGCGG+TGG + chr3_3:55751317-55751336 Msa0459260:CDS 60.0%
! GTCGGATGGGTTTGTGCGGT+GGG + chr3_3:55751318-55751337 Msa0459260:CDS 60.0%
! TCGGATGGGTTTGTGCGGTG+GGG + chr3_3:55751319-55751338 Msa0459260:CDS 60.0%
CGGTGGGGGGAAGAGATTGA+AGG + chr3_3:55751334-55751353 Msa0459260:CDS 60.0%
!! GGGTTGCAGAGAGGTTGGTG+GGG + chr3_3:55751374-55751393 Msa0459260:CDS 60.0%
! GAAGGAAGCGTGGGGGAGTA+TGG + chr3_3:55751441-55751460 Msa0459260:CDS 60.0%
! AGGAAGCGTGGGGGAGTATG+GGG + chr3_3:55751443-55751462 Msa0459260:CDS 60.0%
! GGGAATGGTTTGTGTCCGGG+AGG + chr3_3:55751502-55751521 Msa0459260:CDS 60.0%
! GAAGAGAATGGCTCGGGTGG+TGG + chr3_3:55751763-55751782 Msa0459260:CDS 60.0%
CGACCAGGGGCCAAGACTTT+AGG - chr3_3:55756415-55756434 None:intergenic 60.0%
AGTGAGGTGGGAGGTCCAAC+TGG + chr3_3:55756636-55756655 Msa0459260:three_prime_UTR 60.0%
!! CGGGAACGGTGGTGTTACGG+AGG - chr3_3:55750976-55750995 None:intergenic 65.0%
! GGCGCCGGAGAGTGGAAGTA+GGG - chr3_3:55751023-55751042 None:intergenic 65.0%
TGGAGGGGAAGGAGAGGGAG+TGG + chr3_3:55751289-55751308 Msa0459260:CDS 65.0%
GGAGGGGAAGGAGAGGGAGT+GGG + chr3_3:55751290-55751309 Msa0459260:CDS 65.0%
GGGAAGGAGAGGGAGTGGGT+TGG + chr3_3:55751294-55751313 Msa0459260:CDS 65.0%
!! GGGAGTGGGTTGGTGTCGGA+TGG + chr3_3:55751304-55751323 Msa0459260:CDS 65.0%
! CGGATGGGTTTGTGCGGTGG+GGG + chr3_3:55751320-55751339 Msa0459260:CDS 65.0%
! GGATGGGTTTGTGCGGTGGG+GGG + chr3_3:55751321-55751340 Msa0459260:CDS 65.0%
! GGAAGCGTGGGGGAGTATGG+GGG + chr3_3:55751444-55751463 Msa0459260:CDS 65.0%
!! GCTCGGGTGGTGGAATGTCG+AGG + chr3_3:55751773-55751792 Msa0459260:CDS 65.0%
!! CGGGTGGTGGAATGTCGAGG+AGG + chr3_3:55751776-55751795 Msa0459260:CDS 65.0%
TAGCGGAGAGCGACGCGTAG+CGG - chr3_3:55752774-55752793 None:intergenic 65.0%
! CGGCGCCGGAGAGTGGAAGT+AGG - chr3_3:55751024-55751043 None:intergenic 70.0%
! CGTGAATCGGCGCCGGAGAG+TGG - chr3_3:55751031-55751050 None:intergenic 70.0%
GCAGCGCTATAGCAGCCGCG+CGG + chr3_3:55752159-55752178 Msa0459260:intron 70.0%
GCTATAGCAGCCGCGCGGTG+CGG + chr3_3:55752164-55752183 Msa0459260:intron 70.0%
CGGTACCACACCGCACCGCG+CGG - chr3_3:55752177-55752196 None:intergenic 75.0%
CGCGCGGTGCGGTGTGGTAC+CGG + chr3_3:55752175-55752194 Msa0459260:intron 75.0%
! AGCAGCCGCGCGGTGCGGTG+TGG + chr3_3:55752169-55752188 Msa0459260:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 55750935 55757711 55750935 ID=Msa0459260;Name=Msa0459260
chr3_3 mRNA 55750935 55757711 55750935 ID=Msa0459260-mRNA-1;Parent=Msa0459260;Name=Msa0459260-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0.85|0.75|1|0.57|0.5|8|677|655
chr3_3 exon 55750935 55752003 55750935 ID=Msa0459260-mRNA-1:exon:11054;Parent=Msa0459260-mRNA-1
chr3_3 exon 55753053 55753262 55753053 ID=Msa0459260-mRNA-1:exon:11055;Parent=Msa0459260-mRNA-1
chr3_3 exon 55753977 55754470 55753977 ID=Msa0459260-mRNA-1:exon:11056;Parent=Msa0459260-mRNA-1
chr3_3 exon 55754970 55755110 55754970 ID=Msa0459260-mRNA-1:exon:11057;Parent=Msa0459260-mRNA-1
chr3_3 exon 55755199 55755265 55755199 ID=Msa0459260-mRNA-1:exon:11058;Parent=Msa0459260-mRNA-1
chr3_3 exon 55755347 55755426 55755347 ID=Msa0459260-mRNA-1:exon:11059;Parent=Msa0459260-mRNA-1
chr3_3 exon 55756586 55756749 55756586 ID=Msa0459260-mRNA-1:exon:11060;Parent=Msa0459260-mRNA-1
chr3_3 exon 55757292 55757711 55757292 ID=Msa0459260-mRNA-1:exon:11061;Parent=Msa0459260-mRNA-1
chr3_3 CDS 55750935 55752003 55750935 ID=Msa0459260-mRNA-1:cds;Parent=Msa0459260-mRNA-1
chr3_3 CDS 55753053 55753262 55753053 ID=Msa0459260-mRNA-1:cds;Parent=Msa0459260-mRNA-1
chr3_3 CDS 55753977 55754470 55753977 ID=Msa0459260-mRNA-1:cds;Parent=Msa0459260-mRNA-1
chr3_3 CDS 55754970 55755110 55754970 ID=Msa0459260-mRNA-1:cds;Parent=Msa0459260-mRNA-1
chr3_3 CDS 55755199 55755252 55755199 ID=Msa0459260-mRNA-1:cds;Parent=Msa0459260-mRNA-1
chr3_3 three_prime_UTR 55755253 55755265 55755253 ID=Msa0459260-mRNA-1:three_prime_utr;Parent=Msa0459260-mRNA-1
chr3_3 three_prime_UTR 55755347 55755426 55755347 ID=Msa0459260-mRNA-1:three_prime_utr;Parent=Msa0459260-mRNA-1
chr3_3 three_prime_UTR 55756586 55756749 55756586 ID=Msa0459260-mRNA-1:three_prime_utr;Parent=Msa0459260-mRNA-1
chr3_3 three_prime_UTR 55757292 55757711 55757292 ID=Msa0459260-mRNA-1:three_prime_utr;Parent=Msa0459260-mRNA-1
Gene Sequence

>Msa0459260

ATGAACGAAAACATCTCAAACTGGATAATGGAATTCCTCCTCCGTAACACCACCGTTCCCGATCCCCTAATTCAAAAAACCCTAACCCTACTTCCACTCTCCGGCGCCGATTCACGTCTCAAAAAAACCCTCCTCCTCCGCGTTCTTCAATCCCACATCCTCAACGCTTCAATCTCCGAAGTCTCCCTTCAAATCCTCGAACATCTTGAAGAGATTTACCGCGACGACGGAGTTTCTATCACGAATGCGTTTCGGAGTGCTTACTGTGCTGTTGCGGTTGAATGTACGGTGAAGTATTTGATTAATTCGCCGGAGGATCCGTCTGGTGAGTATTTTTCGGCGGTGAAGAGGATTTGGAGGGGAAGGAGAGGGAGTGGGTTGGTGTCGGATGGGTTTGTGCGGTGGGGGGAAGAGATTGAAGGTGCGCTTTGGGATGTTAGGGTTGCAGAGAGGTTGGTGGGGTTGAATACAAGGAGAGATGCGGTTGTTGAAGTGAAGAGGTTTTTGAAGGAAGCGTGGGGGAGTATGGGGGATTCGTTTCTTGATTTGATTGCGATGGTTTCGAAGGGGAATGGTTTGTGTCCGGGAGGTGTTTGTGAAAATGCTGCTGAGGGGAGTAGAAGGTTGTTAGAAGGTTTGGGGAAAAGGAAAGTGAATGATGATGATGTAGCAATGGGTGAAAAGATTGCGATGGTTTCGAAGGGGAATGGTTTGTGTCCAGGAGGTGTTTGTGAAAATGCTGCTGAGGGGAGTAGAAGGTTGTTAGAAGGATTGGGGAAAGAGAAAGTGAATAATGATGTTGGTGAAAATCATGGTAACCGGCAATTGGAAGAGAATGGCTCGGGTGGTGGAATGTCGAGGAGGCGTAATGGGAGAGTAGAAGGTTTAGGGAAAGAGAAAATGAATGATGATGAGAATGGTAACGTGAATGATGTTGATGATAGTGATGATGAGATGATGATGGGTGAAAATCATGGCAATGATGAATCGGAAGAGAGAGTTGGTACTTCTGTTGATGCGAATCAGGAAGTGGAACAGCAAGCTGGTGCATCTAGAATGGGAGATAAAGGTGTTTGTGAAATTGCTGAAGGGGGTGAAGATTTGAGGAAGCGTGATGGGAGGTTAGAAGGTTTGGGAAAGGAGAAAATGAATGATGATGGTGACGATGTGAATGATAATGATAATGTTGATGGGGACGATGATGTAGCATTGATGGATGGAAATCGTGGCAATGAACAATTGGAAGCGATAGTTCGCACCTCTGGAATGAGAGATAAAGAAATTCGGAAAGACAATGGTCAGCTCAAACGCAAGCACTCTGCACTAAAAACAAGACACAAGGGAGTTAAACTCTCTGGTGATGAGGAAGCGAGGCCGATAAATTTTTCGACTAAATATGAAAATCTGCGTATTGCTGATGTGAAGAAACTTCGGGAGTCCCTTAAATTAAGTTCTTTGGAGCTAAAAGCATTGGTCAAAGATCCTCTTCCTGATGCATTGCACACATCTGAAGCCGTAAGATCCAAATTGGCTACAAAAGATATGAATCGCAGGCCAGCCAGTGAAAAGCAGAGTGAACATGTAGATGTACGAGATTCAGATGCATGCAAGACTATTGTACTATATCAGCCTAATGATGCCAATGTTGCCAAGGAGATTTCTGTTCCTTGTAGTAGTGATCTTCCTAACTGTAGTAATGGTAGTCGCCCCAACTATAGTAATGATCGTCGCCCCAACTTAATGCGACGGGCAAGTCATGCTCAGACATACAAGTGGGATGATTCAATAGAGAACTTACCGCAACAAAGTCAGCCAAGAAGGAAGAAAAGGAAATGGACTTCCTTGGAAGAAGAGACACTAAGGGCTGGTGTAAGAATGTATGTTTTTTTAACTAGTGAGCTATCATGGATGCAGGTTTGGAGAAGGAAACTGGAGGACAATCCTAGACTTTTACAGCAACATATTTGA
Protein sequence

>Msa0459260

MNENISNWIMEFLLRNTTVPDPLIQKTLTLLPLSGADSRLKKTLLLRVLQSHILNASISEVSLQILEHLEEIYRDDGVSITNAFRSAYCAVAVECTVKYLINSPEDPSGEYFSAVKRIWRGRRGSGLVSDGFVRWGEEIEGALWDVRVAERLVGLNTRRDAVVEVKRFLKEAWGSMGDSFLDLIAMVSKGNGLCPGGVCENAAEGSRRLLEGLGKRKVNDDDVAMGEKIAMVSKGNGLCPGGVCENAAEGSRRLLEGLGKEKVNNDVGENHGNRQLEENGSGGGMSRRRNGRVEGLGKEKMNDDENGNVNDVDDSDDEMMMGENHGNDESEERVGTSVDANQEVEQQAGASRMGDKGVCEIAEGGEDLRKRDGRLEGLGKEKMNDDGDDVNDNDNVDGDDDVALMDGNRGNEQLEAIVRTSGMRDKEIRKDNGQLKRKHSALKTRHKGVKLSGDEEARPINFSTKYENLRIADVKKLRESLKLSSLELKALVKDPLPDALHTSEAVRSKLATKDMNRRPASEKQSEHVDVRDSDACKTIVLYQPNDANVAKEISVPCSSDLPNCSNGSRPNYSNDRRPNLMRRASHAQTYKWDDSIENLPQQSQPRRKKRKWTSLEEETLRAGVRMYVFLTSELSWMQVWRRKLEDNPRLLQQHI*