AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0703490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703490 MtrunA17_Chr8g0381741 82.692 312 5 2 1 264 1 311 3.43e-169 469
Msa0703490 MtrunA17_Chr3g0123691 48.780 328 76 12 1 263 1 301 2.68e-70 218
Msa0703490 MtrunA17_Chr3g0119291 34.155 284 129 10 1 255 1 255 2.22e-34 124
Msa0703490 MtrunA17_Chr6g0453021 41.007 139 75 5 43 178 86 220 9.24e-19 83.6
Msa0703490 MtrunA17_Chr8g0362751 34.118 170 75 5 45 178 81 249 4.44e-16 76.3
Msa0703490 MtrunA17_Chr5g0415941 73.585 53 13 1 43 95 77 128 6.51e-16 76.3
Msa0703490 MtrunA17_Chr4g0060031 76.744 43 10 0 53 95 94 136 1.14e-13 69.7
Msa0703490 MtrunA17_Chr8g0362151 57.627 59 23 1 37 95 62 118 1.93e-13 68.6
Msa0703490 MtrunA17_Chr5g0416391 58.929 56 21 1 40 95 65 118 1.29e-12 66.2
Msa0703490 MtrunA17_Chr6g0450991 41.053 95 55 1 53 146 66 160 5.63e-12 64.7
Msa0703490 MtrunA17_Chr7g0217111 67.442 43 14 0 53 95 79 121 6.84e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703490 AT2G22430.1 36.337 344 105 13 1 264 2 311 1.98e-42 147
Msa0703490 AT4G40060.1 59.048 105 28 3 1 95 1 100 9.32e-29 111
Msa0703490 AT5G65310.1 48.673 113 40 5 1 95 1 113 1.39e-20 89.4
Msa0703490 AT5G65310.2 55.556 72 22 1 34 95 24 95 6.98e-18 81.6
Msa0703490 AT3G01220.1 57.143 56 24 0 40 95 73 128 1.46e-14 72.4
Msa0703490 AT1G69780.1 70.455 44 13 0 52 95 83 126 4.06e-14 71.2
Msa0703490 AT5G15150.1 45.263 95 45 3 1 95 69 156 1.05e-13 70.1
Msa0703490 AT1G26960.1 68.182 44 14 0 52 95 69 112 8.40e-13 67.0
Msa0703490 AT3G01470.1 69.767 43 13 0 53 95 67 109 1.37e-12 66.6

Find 107 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTTTAATTATAAGATTA+AGG 0.225386 4_4:+75448799 None:intergenic
GCTTAAACAATTGTGCTAAT+TGG 0.244611 4_4:-75448943 Msa0703490:five_prime_UTR
TCATCTCATCTAAGCGTTAT+TGG 0.260502 4_4:-75446468 Msa0703490:three_prime_UTR
TTTGGATCCACAATACTAAA+AGG 0.271471 4_4:+75446581 None:intergenic
GCAAGCTTCACTTTCCTATC+TGG 0.289532 4_4:+75448059 None:intergenic
CTTGGCAGCTCCGATTCTTT+AGG 0.293153 4_4:-75448762 Msa0703490:CDS
GGTAGACACATGGGAGTTAA+TGG 0.303946 4_4:-75448989 Msa0703490:five_prime_UTR
AACGCAGCAATTTCTTCATC+TGG 0.309720 4_4:-75447282 Msa0703490:CDS
CATTCTTAGATCCGATTCTA+AGG 0.324209 4_4:-75447418 Msa0703490:CDS
CCATACACTTGGTTGTTCCT+TGG 0.333790 4_4:+75448218 None:intergenic
CTCACTTAAAAGGAGAGTTT+TGG 0.361022 4_4:+75448906 None:intergenic
GTTGTATTATGTTGAGTTGA+TGG 0.363611 4_4:+75449230 None:intergenic
GGGAGAGTTTACCGCACATT+TGG 0.366380 4_4:+75446563 None:intergenic
CATTGATTACACAGCTTTCA+AGG 0.373554 4_4:+75446344 None:intergenic
AAAGCAAAGTTAAAACTCTT+GGG 0.374481 4_4:+75446542 None:intergenic
TGTGTGTTGGAAGTGTTTGA+TGG 0.381386 4_4:-75449044 Msa0703490:five_prime_UTR
GAAAGCAAAGTTAAAACTCT+TGG 0.393346 4_4:+75446541 None:intergenic
TTCAGAACAATTAAACTTCA+AGG 0.401312 4_4:+75447215 None:intergenic
TGTGGATCAAGTTAAGGCTT+TGG 0.415440 4_4:-75448114 Msa0703490:CDS
TATTATATTTGCTTCCTCTC+GGG 0.417233 4_4:+75446374 None:intergenic
GCTTGGTTTGCAACCAAGAC+AGG 0.426710 4_4:-75448030 Msa0703490:intron
CCTAGGTTCAAATCCACTCT+TGG 0.435239 4_4:+75446519 None:intergenic
GTGCGTACGTGGGTGTTACT+CGG 0.437407 4_4:+75446624 None:intergenic
CGTAATTGCACGTGCGTACG+TGG 0.442791 4_4:+75446613 None:intergenic
CCAAGGAACAACCAAGTGTA+TGG 0.442867 4_4:-75448218 Msa0703490:CDS
AATATGAATTAACCTGTTGT+TGG 0.443287 4_4:+75448720 None:intergenic
GTGAAGCTTGCTCAAGAGCT+TGG 0.455028 4_4:-75448047 Msa0703490:CDS
AACAACCACCAACGCTTCAA+TGG 0.458388 4_4:-75447077 Msa0703490:CDS
TTATTATATTTGCTTCCTCT+CGG 0.458603 4_4:+75446373 None:intergenic
ATGACAATTTGTCCAACAAC+AGG 0.459440 4_4:-75448732 Msa0703490:intron
TTTGCTTCCTCTCGGGGCAC+TGG 0.460179 4_4:+75446381 None:intergenic
GGTAAAGGAGTAAAGATGAA+TGG 0.460572 4_4:+75446687 None:intergenic
TCAGACGCAGTTTGTGAAGA+TGG 0.461193 4_4:-75447151 Msa0703490:CDS
GTAAAGGAGTAAAGATGAAT+GGG 0.465550 4_4:+75446688 None:intergenic
CCAAGAGTGGATTTGAACCT+AGG 0.465714 4_4:-75446519 Msa0703490:three_prime_UTR
ACGCTTAGATGAGATGATAT+AGG 0.471754 4_4:+75446474 None:intergenic
ACTAAGTGTGGATCAAGTTA+AGG 0.472988 4_4:-75448120 Msa0703490:CDS
TTGTGTTGTGTGTTGTGTGT+TGG 0.473877 4_4:-75449057 Msa0703490:five_prime_UTR
AACCAAACAGCAACCTGTCT+TGG 0.475030 4_4:+75448017 None:intergenic
GTAGTTTAAGTCCTTAGAAT+CGG 0.480930 4_4:+75447407 None:intergenic
ACGCAGCAATTTCTTCATCT+GGG 0.483849 4_4:-75447281 Msa0703490:CDS
GAAGAACCGTCTTTGAAATC+CGG 0.484012 4_4:+75447342 None:intergenic
AGTCTTCGTTTCTTCTGCCC+TGG 0.485359 4_4:+75448140 None:intergenic
AGTTGCTTCACTATTTCCTC+CGG 0.491792 4_4:-75447361 Msa0703490:CDS
GAGAGAAGTTAAAGAAAGTG+AGG 0.495996 4_4:-75446893 Msa0703490:three_prime_UTR
AATGGTGATAAGTGGTTGTA+TGG 0.498069 4_4:-75448971 Msa0703490:five_prime_UTR
TCTAGCTTAATCAAGATCCT+AGG 0.499847 4_4:+75446502 None:intergenic
GTGTGTTGGAAGTGTTTGAT+GGG 0.500292 4_4:-75449043 Msa0703490:five_prime_UTR
GAGAAGTTAAAGAAAGTGAG+GGG 0.504805 4_4:-75446891 Msa0703490:three_prime_UTR
CGCAGCAATTTCTTCATCTG+GGG 0.511842 4_4:-75447280 Msa0703490:CDS
GCGTTATTGGATCGTTCTAT+CGG 0.512212 4_4:-75446455 Msa0703490:three_prime_UTR
CATGAGAGCACCTAAAGAAT+CGG 0.517449 4_4:+75448752 None:intergenic
TTAACTTTGCTTTCCAAGAG+TGG 0.517713 4_4:-75446532 Msa0703490:three_prime_UTR
GAAATTCCCTTCCATACACT+TGG 0.519570 4_4:+75448207 None:intergenic
ATTATATTTGCTTCCTCTCG+GGG 0.519745 4_4:+75446375 None:intergenic
AAGGCAACAAACAGAGAAAG+TGG 0.526963 4_4:+75449188 None:intergenic
ACTCATGAGTTTAATTTGAG+AGG 0.531600 4_4:-75447004 Msa0703490:three_prime_UTR
GAAGATATTTACTATTCGAA+TGG 0.531990 4_4:-75446718 Msa0703490:three_prime_UTR
AATGGTATTGTTCAGAGGAG+TGG 0.534262 4_4:-75447059 Msa0703490:CDS
TTCATCTAGTCCTTCCATCA+CGG 0.534291 4_4:+75448181 None:intergenic
GTGGATGATCGCATGGTGTA+GGG 0.534475 4_4:-75446854 Msa0703490:three_prime_UTR
ACCTTGCATAGTAGTTCTGT+CGG 0.537846 4_4:-75446667 Msa0703490:three_prime_UTR
ATATAGAAGAAGAGAGTCCA+AGG 0.540750 4_4:-75448235 Msa0703490:intron
AAAACAAGCTTGAACCAGAT+AGG 0.540809 4_4:-75448073 Msa0703490:CDS
AGAGAAGTTAAAGAAAGTGA+GGG 0.544627 4_4:-75446892 Msa0703490:three_prime_UTR
ATGGAAGGACTAGATGAAGA+AGG 0.546306 4_4:-75448176 Msa0703490:CDS
CTTAGAATCGGATCTAAGAA+TGG 0.550362 4_4:+75447419 None:intergenic
TTTCCTCCGGATTTCAAAGA+CGG 0.551128 4_4:-75447348 Msa0703490:CDS
GAACAATACCATTGAAGCGT+TGG 0.555180 4_4:+75447069 None:intergenic
GGAACAACCAAGTGTATGGA+AGG 0.557687 4_4:-75448214 Msa0703490:CDS
AGAACTACTATGCAAGGTAA+AGG 0.560844 4_4:+75446672 None:intergenic
GGTGGATGATCGCATGGTGT+AGG 0.563295 4_4:-75446855 Msa0703490:three_prime_UTR
CAATACCATTGAAGCGTTGG+TGG 0.571844 4_4:+75447072 None:intergenic
GATGATGATTAAGACCGTGC+GGG 0.577156 4_4:-75446815 Msa0703490:three_prime_UTR
GAATTTCAGTCCGTGATGGA+AGG 0.580376 4_4:-75448191 Msa0703490:CDS
TCCGACAGAACTACTATGCA+AGG 0.581868 4_4:+75446666 None:intergenic
GTTCTCATCATGAAGAGACT+TGG 0.586467 4_4:-75448780 Msa0703490:exon
AGGCAACAAACAGAGAAAGT+GGG 0.597235 4_4:+75449189 None:intergenic
AACTTCAAGGAAGAAGAACC+AGG 0.601960 4_4:+75447228 None:intergenic
GGTGTAGGGTCGGAGATGAA+AGG 0.608295 4_4:-75446840 Msa0703490:three_prime_UTR
GCTTCAATGGTATTGTTCAG+AGG 0.609163 4_4:-75447064 Msa0703490:CDS
AGAAGTTAAAGAAAGTGAGG+GGG 0.610194 4_4:-75446890 Msa0703490:three_prime_UTR
GAAGGATGTGTTGATGAACC+AGG 0.610489 4_4:-75448158 Msa0703490:CDS
ATGATGATTAAGACCGTGCG+GGG 0.615642 4_4:-75446814 Msa0703490:three_prime_UTR
AAGGGAATTTCAGTCCGTGA+TGG 0.618116 4_4:-75448195 Msa0703490:CDS
GAAGTGTTTGATGGGTGAAG+AGG 0.622629 4_4:-75449035 Msa0703490:five_prime_UTR
GAAGAAACGAAGACTAAGTG+TGG 0.625631 4_4:-75448132 Msa0703490:CDS
AAGCAAAGTTAAAACTCTTG+GGG 0.628816 4_4:+75446543 None:intergenic
ATGATCGCATGGTGTAGGGT+CGG 0.634562 4_4:-75446850 Msa0703490:three_prime_UTR
TTATGTTGAGTTGATGGTGA+AGG 0.638238 4_4:+75449236 None:intergenic
GGCAACAAACAGAGAAAGTG+GGG 0.643111 4_4:+75449190 None:intergenic
GTAATTGCACGTGCGTACGT+GGG 0.644889 4_4:+75446614 None:intergenic
TGGGAGTTAATGGTGATAAG+TGG 0.653445 4_4:-75448979 Msa0703490:five_prime_UTR
GATGATTAAGACCGTGCGGG+GGG 0.656865 4_4:-75446812 Msa0703490:three_prime_UTR
GTTGAAGGTGGATGATCGCA+TGG 0.661272 4_4:-75446861 Msa0703490:three_prime_UTR
AAGCAATTACTCATAGAAGA+CGG 0.662929 4_4:+75447180 None:intergenic
GAACAACCAAGTGTATGGAA+GGG 0.664333 4_4:-75448213 Msa0703490:CDS
GAACCGTCTTTGAAATCCGG+AGG 0.667219 4_4:+75447345 None:intergenic
AAGGATGTGTTGATGAACCA+GGG 0.673289 4_4:-75448157 Msa0703490:CDS
TGATGATTAAGACCGTGCGG+GGG 0.676961 4_4:-75446813 Msa0703490:three_prime_UTR
ATTGCAAGAATCAGAAAACA+CGG 0.678412 4_4:-75447457 Msa0703490:CDS
TTGATGGTGAAGGAGTTCAA+AGG 0.690052 4_4:+75449246 None:intergenic
AGAATCGGATCTAAGAATGG+CGG 0.697638 4_4:+75447422 None:intergenic
TGATGATGATTAAGACCGTG+CGG 0.699818 4_4:-75446816 Msa0703490:three_prime_UTR
GTATTGTGGATCCAAATGTG+CGG 0.711833 4_4:-75446574 Msa0703490:three_prime_UTR
TTGTTAACCAGTGCCCCGAG+AGG 0.713351 4_4:-75446388 Msa0703490:three_prime_UTR
GTACGCACGTGCAATTACGA+AGG 0.716791 4_4:-75446609 Msa0703490:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAATGAAGAAAAAA+AGG + chr4_4:75447002-75447021 None:intergenic 10.0%
!! GAACTTTAATTATAAGATTA+AGG + chr4_4:75446765-75446784 None:intergenic 15.0%
!!! AAAAAGGTATTACTTTTTAA+AGG + chr4_4:75446986-75447005 None:intergenic 15.0%
!! TAAAATACATTTATATGCTA+AGG + chr4_4:75447893-75447912 None:intergenic 15.0%
!!! TTACACTGTCAAATTTTTAT+AGG + chr4_4:75446404-75446423 None:intergenic 20.0%
!! AATATAGTGAATAAAAAGGA+AGG + chr4_4:75447054-75447073 None:intergenic 20.0%
!! ATGCAATATAGTGAATAAAA+AGG + chr4_4:75447058-75447077 None:intergenic 20.0%
!!! AAAAATAATTTTACAGCCAA+AGG + chr4_4:75447720-75447739 None:intergenic 20.0%
!! TTAGTGTATTAGATATTCAA+GGG + chr4_4:75447813-75447832 None:intergenic 20.0%
!! TTGAATATCTAATACACTAA+GGG - chr4_4:75447813-75447832 Msa0703490:intron 20.0%
!!! TTTGTATCATATGCTTATTT+TGG - chr4_4:75447992-75448011 Msa0703490:intron 20.0%
!!! TTCATTAATCCATTTTTACA+GGG + chr4_4:75448635-75448654 None:intergenic 20.0%
!!! ATTCATTAATCCATTTTTAC+AGG + chr4_4:75448636-75448655 None:intergenic 20.0%
!!! GTAAAAATGGATTAATGAAT+TGG - chr4_4:75448636-75448655 Msa0703490:intron 20.0%
!!! AAACTCTGTTGTAAAAATTT+TGG - chr4_4:75448811-75448830 Msa0703490:five_prime_UTR 20.0%
!!! TGTTGTAAAAATTTTGGAAT+TGG - chr4_4:75448817-75448836 Msa0703490:five_prime_UTR 20.0%
!!! GTTGTAAAAATTTTGGAATT+GGG - chr4_4:75448818-75448837 Msa0703490:five_prime_UTR 20.0%
!! CAAATTTTTATAGGCTAAGA+AGG + chr4_4:75446395-75446414 None:intergenic 25.0%
!!! TTTTTTTTACAACACTGTTC+TGG + chr4_4:75446453-75446472 None:intergenic 25.0%
! CAAGTGTTAAGAAAAAACAA+AGG - chr4_4:75446551-75446570 Msa0703490:three_prime_UTR 25.0%
!! TTTGTGTTTTCTCACTTAAA+AGG + chr4_4:75446668-75446687 None:intergenic 25.0%
! AATATGAATTAACCTGTTGT+TGG + chr4_4:75446844-75446863 None:intergenic 25.0%
! AGGAATCAAGCATAAAAAAT+TGG + chr4_4:75447034-75447053 None:intergenic 25.0%
! TTACTGTCATGTTTGATATT+AGG - chr4_4:75447102-75447121 Msa0703490:CDS 25.0%
! TACTGTCATGTTTGATATTA+GGG - chr4_4:75447103-75447122 Msa0703490:CDS 25.0%
!!! TAGTTGATTTGTCAGAATTA+CGG + chr4_4:75447214-75447233 None:intergenic 25.0%
! ATAATCTCTTTCCAATTGTT+TGG + chr4_4:75447596-75447615 None:intergenic 25.0%
! AAACAATTGGAAAGAGATTA+TGG - chr4_4:75447595-75447614 Msa0703490:intron 25.0%
! AAGTTTAAGTGCATCATAAT+TGG + chr4_4:75447632-75447651 None:intergenic 25.0%
! ATAACTATACTATACTCCTT+TGG - chr4_4:75447701-75447720 Msa0703490:intron 25.0%
! TAGTGTATTAGATATTCAAG+GGG + chr4_4:75447812-75447831 None:intergenic 25.0%
! CTTAGTGTATTAGATATTCA+AGG + chr4_4:75447814-75447833 None:intergenic 25.0%
! CTTGAATATCTAATACACTA+AGG - chr4_4:75447812-75447831 Msa0703490:intron 25.0%
! TACACTCTATAAAGATACTT+GGG + chr4_4:75447940-75447959 None:intergenic 25.0%
! ATACACTCTATAAAGATACT+TGG + chr4_4:75447941-75447960 None:intergenic 25.0%
! AACTACGATTGTTTCAAAAA+CGG - chr4_4:75448171-75448190 Msa0703490:CDS 25.0%
! TTCAGAACAATTAAACTTCA+AGG + chr4_4:75448349-75448368 None:intergenic 25.0%
! AAAAATAAGACATTGTGCAA+CGG - chr4_4:75448590-75448609 Msa0703490:intron 25.0%
! GAAGATATTTACTATTCGAA+TGG - chr4_4:75448843-75448862 Msa0703490:five_prime_UTR 25.0%
!!! TTCTGTCGGATTTTTTTTTT+AGG - chr4_4:75448908-75448927 Msa0703490:five_prime_UTR 25.0%
! AAAGCAAAGTTAAAACTCTT+GGG + chr4_4:75449022-75449041 None:intergenic 25.0%
! TTATTATATTTGCTTCCTCT+CGG + chr4_4:75449191-75449210 None:intergenic 25.0%
!! GTTGTATTATGTTGAGTTGA+TGG + chr4_4:75446334-75446353 None:intergenic 30.0%
AAAAAACAAAGGTAGACACA+TGG - chr4_4:75446562-75446581 Msa0703490:three_prime_UTR 30.0%
AAAAACAAAGGTAGACACAT+GGG - chr4_4:75446563-75446582 Msa0703490:three_prime_UTR 30.0%
GCTTAAACAATTGTGCTAAT+TGG - chr4_4:75446618-75446637 Msa0703490:three_prime_UTR 30.0%
AGATCTGAAGAGAGAAAAAA+AGG + chr4_4:75446712-75446731 None:intergenic 30.0%
AGTGTATTAGATATTCAAGG+GGG + chr4_4:75447811-75447830 None:intergenic 30.0%
AATATCTAATACACTAAGGG+CGG - chr4_4:75447816-75447835 Msa0703490:intron 30.0%
AATCTCTTTGCATATAATGC+TGG - chr4_4:75447844-75447863 Msa0703490:intron 30.0%
!!! TATCATATGCTTATTTTGGC+AGG - chr4_4:75447996-75448015 Msa0703490:intron 30.0%
ATTGCAAGAATCAGAAAACA+CGG - chr4_4:75448104-75448123 Msa0703490:CDS 30.0%
GTAGTTTAAGTCCTTAGAAT+CGG + chr4_4:75448157-75448176 None:intergenic 30.0%
AAGCAATTACTCATAGAAGA+CGG + chr4_4:75448384-75448403 None:intergenic 30.0%
!! ACTCATGAGTTTAATTTGAG+AGG - chr4_4:75448557-75448576 Msa0703490:intron 30.0%
AAAATCGATCCCTGTAAAAA+TGG - chr4_4:75448623-75448642 Msa0703490:intron 30.0%
AGAGAAGTTAAAGAAAGTGA+GGG - chr4_4:75448669-75448688 Msa0703490:intron 30.0%
GTAAAGGAGTAAAGATGAAT+GGG + chr4_4:75448876-75448895 None:intergenic 30.0%
TTTGGATCCACAATACTAAA+AGG + chr4_4:75448983-75449002 None:intergenic 30.0%
AAGCAAAGTTAAAACTCTTG+GGG + chr4_4:75449021-75449040 None:intergenic 30.0%
GAAAGCAAAGTTAAAACTCT+TGG + chr4_4:75449023-75449042 None:intergenic 30.0%
TATTATATTTGCTTCCTCTC+GGG + chr4_4:75449190-75449209 None:intergenic 30.0%
!! TTATGTTGAGTTGATGGTGA+AGG + chr4_4:75446328-75446347 None:intergenic 35.0%
AATGGTGATAAGTGGTTGTA+TGG - chr4_4:75446590-75446609 Msa0703490:three_prime_UTR 35.0%
! CTCACTTAAAAGGAGAGTTT+TGG + chr4_4:75446658-75446677 None:intergenic 35.0%
ATGACAATTTGTCCAACAAC+AGG - chr4_4:75446829-75446848 Msa0703490:three_prime_UTR 35.0%
CAATGCATCTCAACTGAATT+AGG - chr4_4:75447248-75447267 Msa0703490:CDS 35.0%
ATATAGAAGAAGAGAGTCCA+AGG - chr4_4:75447326-75447345 Msa0703490:CDS 35.0%
ACTAAGTGTGGATCAAGTTA+AGG - chr4_4:75447441-75447460 Msa0703490:CDS 35.0%
AAAACAAGCTTGAACCAGAT+AGG - chr4_4:75447488-75447507 Msa0703490:CDS 35.0%
TAGATGGAAGACCAAACAAT+TGG - chr4_4:75447582-75447601 Msa0703490:intron 35.0%
CAATGAAACCTTACTCAAAG+AGG - chr4_4:75447675-75447694 Msa0703490:intron 35.0%
GTTATGTACCTCTTTGAGTA+AGG + chr4_4:75447686-75447705 None:intergenic 35.0%
TGTATTAGATATTCAAGGGG+GGG + chr4_4:75447809-75447828 None:intergenic 35.0%
GTGTATTAGATATTCAAGGG+GGG + chr4_4:75447810-75447829 None:intergenic 35.0%
ATATCTAATACACTAAGGGC+GGG - chr4_4:75447817-75447836 Msa0703490:intron 35.0%
ATACTTGGGTACAATTCAGA+TGG + chr4_4:75447926-75447945 None:intergenic 35.0%
!!! ATGCTTATTTTGGCAGGTTA+AGG - chr4_4:75448002-75448021 Msa0703490:intron 35.0%
CTTAGAATCGGATCTAAGAA+TGG + chr4_4:75448145-75448164 None:intergenic 35.0%
CATTCTTAGATCCGATTCTA+AGG - chr4_4:75448143-75448162 Msa0703490:CDS 35.0%
GATTGTTTCAAAAACGGTGA+TGG - chr4_4:75448177-75448196 Msa0703490:CDS 35.0%
GAGAGAAGTTAAAGAAAGTG+AGG - chr4_4:75448668-75448687 Msa0703490:intron 35.0%
GAGAAGTTAAAGAAAGTGAG+GGG - chr4_4:75448670-75448689 Msa0703490:intron 35.0%
AGAAGTTAAAGAAAGTGAGG+GGG - chr4_4:75448671-75448690 Msa0703490:intron 35.0%
GGTAAAGGAGTAAAGATGAA+TGG + chr4_4:75448877-75448896 None:intergenic 35.0%
AGAACTACTATGCAAGGTAA+AGG + chr4_4:75448892-75448911 None:intergenic 35.0%
! GGCTAATCCTTTTAGTATTG+TGG - chr4_4:75448973-75448992 Msa0703490:five_prime_UTR 35.0%
TTAACTTTGCTTTCCAAGAG+TGG - chr4_4:75449029-75449048 Msa0703490:five_prime_UTR 35.0%
! TCTAGCTTAATCAAGATCCT+AGG + chr4_4:75449062-75449081 None:intergenic 35.0%
ACGCTTAGATGAGATGATAT+AGG + chr4_4:75449090-75449109 None:intergenic 35.0%
TCATCTCATCTAAGCGTTAT+TGG - chr4_4:75449093-75449112 Msa0703490:five_prime_UTR 35.0%
ATTATATTTGCTTCCTCTCG+GGG + chr4_4:75449189-75449208 None:intergenic 35.0%
! CATTGATTACACAGCTTTCA+AGG + chr4_4:75449220-75449239 None:intergenic 35.0%
!! TTGATGGTGAAGGAGTTCAA+AGG + chr4_4:75446318-75446337 None:intergenic 40.0%
AGGCAACAAACAGAGAAAGT+GGG + chr4_4:75446375-75446394 None:intergenic 40.0%
AAGGCAACAAACAGAGAAAG+TGG + chr4_4:75446376-75446395 None:intergenic 40.0%
TTGTGTTGTGTGTTGTGTGT+TGG - chr4_4:75446504-75446523 Msa0703490:three_prime_UTR 40.0%
!! TGTGTGTTGGAAGTGTTTGA+TGG - chr4_4:75446517-75446536 Msa0703490:three_prime_UTR 40.0%
!! GTGTGTTGGAAGTGTTTGAT+GGG - chr4_4:75446518-75446537 Msa0703490:three_prime_UTR 40.0%
TGGGAGTTAATGGTGATAAG+TGG - chr4_4:75446582-75446601 Msa0703490:three_prime_UTR 40.0%
GTTCTCATCATGAAGAGACT+TGG - chr4_4:75446781-75446800 Msa0703490:three_prime_UTR 40.0%
!! CATGAGAGCACCTAAAGAAT+CGG + chr4_4:75446812-75446831 None:intergenic 40.0%
GAACAACCAAGTGTATGGAA+GGG - chr4_4:75447348-75447367 Msa0703490:CDS 40.0%
GAAATTCCCTTCCATACACT+TGG + chr4_4:75447357-75447376 None:intergenic 40.0%
TTCATCTAGTCCTTCCATCA+CGG + chr4_4:75447383-75447402 None:intergenic 40.0%
ATGGAAGGACTAGATGAAGA+AGG - chr4_4:75447385-75447404 Msa0703490:CDS 40.0%
! AAGGATGTGTTGATGAACCA+GGG - chr4_4:75447404-75447423 Msa0703490:CDS 40.0%
GAAGAAACGAAGACTAAGTG+TGG - chr4_4:75447429-75447448 Msa0703490:CDS 40.0%
TGTGGATCAAGTTAAGGCTT+TGG - chr4_4:75447447-75447466 Msa0703490:CDS 40.0%
GTAAGGTTTCATTGTCACGT+TGG + chr4_4:75447669-75447688 None:intergenic 40.0%
AGAATCGGATCTAAGAATGG+CGG + chr4_4:75448142-75448161 None:intergenic 40.0%
AGTTGCTTCACTATTTCCTC+CGG - chr4_4:75448200-75448219 Msa0703490:CDS 40.0%
TTTCCTCCGGATTTCAAAGA+CGG - chr4_4:75448213-75448232 Msa0703490:CDS 40.0%
!! GAAGAACCGTCTTTGAAATC+CGG + chr4_4:75448222-75448241 None:intergenic 40.0%
AACGCAGCAATTTCTTCATC+TGG - chr4_4:75448279-75448298 Msa0703490:intron 40.0%
ACGCAGCAATTTCTTCATCT+GGG - chr4_4:75448280-75448299 Msa0703490:intron 40.0%
! CACAACTTTTTGATGTCTCC+TGG - chr4_4:75448315-75448334 Msa0703490:intron 40.0%
AACTTCAAGGAAGAAGAACC+AGG + chr4_4:75448336-75448355 None:intergenic 40.0%
GAACAATACCATTGAAGCGT+TGG + chr4_4:75448495-75448514 None:intergenic 40.0%
GCTTCAATGGTATTGTTCAG+AGG - chr4_4:75448497-75448516 Msa0703490:intron 40.0%
AATGGTATTGTTCAGAGGAG+TGG - chr4_4:75448502-75448521 Msa0703490:intron 40.0%
! TGATGATGATTAAGACCGTG+CGG - chr4_4:75448745-75448764 Msa0703490:CDS 40.0%
! ACCTTGCATAGTAGTTCTGT+CGG - chr4_4:75448894-75448913 Msa0703490:five_prime_UTR 40.0%
GTATTGTGGATCCAAATGTG+CGG - chr4_4:75448987-75449006 Msa0703490:five_prime_UTR 40.0%
GCGTTATTGGATCGTTCTAT+CGG - chr4_4:75449106-75449125 Msa0703490:five_prime_UTR 40.0%
! GGATCGTTCTATCGGATTTT+AGG - chr4_4:75449114-75449133 Msa0703490:five_prime_UTR 40.0%
GGCAACAAACAGAGAAAGTG+GGG + chr4_4:75446374-75446393 None:intergenic 45.0%
! GAAGTGTTTGATGGGTGAAG+AGG - chr4_4:75446526-75446545 Msa0703490:three_prime_UTR 45.0%
GGTAGACACATGGGAGTTAA+TGG - chr4_4:75446572-75446591 Msa0703490:three_prime_UTR 45.0%
CCATACACTTGGTTGTTCCT+TGG + chr4_4:75447346-75447365 None:intergenic 45.0%
CCAAGGAACAACCAAGTGTA+TGG - chr4_4:75447343-75447362 Msa0703490:CDS 45.0%
GGAACAACCAAGTGTATGGA+AGG - chr4_4:75447347-75447366 Msa0703490:CDS 45.0%
AAGGGAATTTCAGTCCGTGA+TGG - chr4_4:75447366-75447385 Msa0703490:CDS 45.0%
! GAATTTCAGTCCGTGATGGA+AGG - chr4_4:75447370-75447389 Msa0703490:CDS 45.0%
! GAAGGATGTGTTGATGAACC+AGG - chr4_4:75447403-75447422 Msa0703490:CDS 45.0%
GCAAGCTTCACTTTCCTATC+TGG + chr4_4:75447505-75447524 None:intergenic 45.0%
! AACCAAGACAGGTTGCTGTT+TGG - chr4_4:75447542-75447561 Msa0703490:CDS 45.0%
AACCAAACAGCAACCTGTCT+TGG + chr4_4:75447547-75447566 None:intergenic 45.0%
TTCAAAACCGTCGTGCTAGA+TGG - chr4_4:75447566-75447585 Msa0703490:intron 45.0%
CGCAGCAATTTCTTCATCTG+GGG - chr4_4:75448281-75448300 Msa0703490:intron 45.0%
TCAGACGCAGTTTGTGAAGA+TGG - chr4_4:75448410-75448429 Msa0703490:intron 45.0%
AACAACCACCAACGCTTCAA+TGG - chr4_4:75448484-75448503 Msa0703490:intron 45.0%
!! CAATACCATTGAAGCGTTGG+TGG + chr4_4:75448492-75448511 None:intergenic 45.0%
TAAAGAAAGTGAGGGGGAGA+AGG - chr4_4:75448677-75448696 Msa0703490:intron 45.0%
AAAGAAAGTGAGGGGGAGAA+GGG - chr4_4:75448678-75448697 Msa0703490:intron 45.0%
GATGATGATTAAGACCGTGC+GGG - chr4_4:75448746-75448765 Msa0703490:CDS 45.0%
ATGATGATTAAGACCGTGCG+GGG - chr4_4:75448747-75448766 Msa0703490:CDS 45.0%
TCCGACAGAACTACTATGCA+AGG + chr4_4:75448898-75448917 None:intergenic 45.0%
CCTAGGTTCAAATCCACTCT+TGG + chr4_4:75449045-75449064 None:intergenic 45.0%
! CCAAGAGTGGATTTGAACCT+AGG - chr4_4:75449042-75449061 Msa0703490:five_prime_UTR 45.0%
!! TTAAAAAAAATAAAATACTA+TGG - chr4_4:75447134-75447153 Msa0703490:CDS 5.0%
!!! TTTTTTATATATTTAAAGTA+AGG - chr4_4:75449147-75449166 Msa0703490:five_prime_UTR 5.0%
!!! TTTTTATATATTTAAAGTAA+GGG - chr4_4:75449148-75449167 Msa0703490:five_prime_UTR 5.0%
CTTGGCAGCTCCGATTCTTT+AGG - chr4_4:75446799-75446818 Msa0703490:three_prime_UTR 50.0%
AGTCTTCGTTTCTTCTGCCC+TGG + chr4_4:75447424-75447443 None:intergenic 50.0%
! GTGAAGCTTGCTCAAGAGCT+TGG - chr4_4:75447514-75447533 Msa0703490:CDS 50.0%
!! GCTTGGTTTGCAACCAAGAC+AGG - chr4_4:75447531-75447550 Msa0703490:CDS 50.0%
TGGTCTTCCATCTAGCACGA+CGG + chr4_4:75447576-75447595 None:intergenic 50.0%
!! GAACCGTCTTTGAAATCCGG+AGG + chr4_4:75448219-75448238 None:intergenic 50.0%
GTTGAAGGTGGATGATCGCA+TGG - chr4_4:75448700-75448719 Msa0703490:intron 50.0%
GTGGATGATCGCATGGTGTA+GGG - chr4_4:75448707-75448726 Msa0703490:intron 50.0%
ATGATCGCATGGTGTAGGGT+CGG - chr4_4:75448711-75448730 Msa0703490:intron 50.0%
TGATGATTAAGACCGTGCGG+GGG - chr4_4:75448748-75448767 Msa0703490:CDS 50.0%
GTAATTGCACGTGCGTACGT+GGG + chr4_4:75448950-75448969 None:intergenic 50.0%
GTACGCACGTGCAATTACGA+AGG - chr4_4:75448952-75448971 Msa0703490:five_prime_UTR 50.0%
GGGAGAGTTTACCGCACATT+TGG + chr4_4:75449001-75449020 None:intergenic 50.0%
GGTGGATGATCGCATGGTGT+AGG - chr4_4:75448706-75448725 Msa0703490:intron 55.0%
GGTGTAGGGTCGGAGATGAA+AGG - chr4_4:75448721-75448740 Msa0703490:intron 55.0%
GATGATTAAGACCGTGCGGG+GGG - chr4_4:75448749-75448768 Msa0703490:CDS 55.0%
AAATTAACCCTCCCCCCGCA+CGG + chr4_4:75448763-75448782 None:intergenic 55.0%
!! GTGCGTACGTGGGTGTTACT+CGG + chr4_4:75448940-75448959 None:intergenic 55.0%
CGTAATTGCACGTGCGTACG+TGG + chr4_4:75448951-75448970 None:intergenic 55.0%
TTGTTAACCAGTGCCCCGAG+AGG - chr4_4:75449173-75449192 Msa0703490:five_prime_UTR 55.0%
GTGAGGGGGAGAAGGGTTGA+AGG - chr4_4:75448685-75448704 Msa0703490:intron 60.0%
AGGGGGAGAAGGGTTGAAGG+TGG - chr4_4:75448688-75448707 Msa0703490:intron 60.0%
ATTAAGACCGTGCGGGGGGA+GGG - chr4_4:75448753-75448772 Msa0703490:CDS 60.0%
TTTGCTTCCTCTCGGGGCAC+TGG + chr4_4:75449183-75449202 None:intergenic 60.0%
GATTAAGACCGTGCGGGGGG+AGG - chr4_4:75448752-75448771 Msa0703490:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 75446314 75449269 75446314 ID=Msa0703490;Name=Msa0703490
chr4_4 mRNA 75446314 75449269 75446314 ID=Msa0703490-mRNA-1;Parent=Msa0703490;Name=Msa0703490-mRNA-1;_AED=0.04;_eAED=0.04;_QI=476|0.5|0.66|1|1|1|3|739|264
chr4_4 exon 75446314 75447565 75446314 ID=Msa0703490-mRNA-1:exon:23673;Parent=Msa0703490-mRNA-1
chr4_4 exon 75448031 75448251 75448031 ID=Msa0703490-mRNA-1:exon:23672;Parent=Msa0703490-mRNA-1
chr4_4 exon 75448733 75449269 75448733 ID=Msa0703490-mRNA-1:exon:23671;Parent=Msa0703490-mRNA-1
chr4_4 five_prime_UTR 75448794 75449269 75448794 ID=Msa0703490-mRNA-1:five_prime_utr;Parent=Msa0703490-mRNA-1
chr4_4 CDS 75448733 75448793 75448733 ID=Msa0703490-mRNA-1:cds;Parent=Msa0703490-mRNA-1
chr4_4 CDS 75448031 75448251 75448031 ID=Msa0703490-mRNA-1:cds;Parent=Msa0703490-mRNA-1
chr4_4 CDS 75447053 75447565 75447053 ID=Msa0703490-mRNA-1:cds;Parent=Msa0703490-mRNA-1
chr4_4 three_prime_UTR 75446314 75447052 75446314 ID=Msa0703490-mRNA-1:three_prime_utr;Parent=Msa0703490-mRNA-1
Gene Sequence

>Msa0703490

ATGAAGAGACTTGGCAGCTCCGATTCTTTAGGTGCTCTCATGACAATTTGTCCAACAACAGAAGAAGAGAGTCCAAGGAACAACCAAGTGTATGGAAGGGAATTTCAGTCCGTGATGGAAGGACTAGATGAAGAAGGATGTGTTGATGAACCAGGGCAGAAGAAACGAAGACTAAGTGTGGATCAAGTTAAGGCTTTGGAGAAGAATTTTGAAGTTGAAAACAAGCTTGAACCAGATAGGAAAGTGAAGCTTGCTCAAGAGCTTGGTTTGCAACCAAGACAGGTTAAGGAATTGAAATCAAGATTGCAAATACAAGAAGAAAACACAACTACTGAAAGCGATGTTTGTGTGAAAGAAGAGTTGATAACATTGCAAGAATCAGAAAACACGGCTTCTGATGAAACCGCCATTCTTAGATCCGATTCTAAGGACTTAAACTACGATTGTTTCAAAAACGGTGATGGAGTTGCTTCACTATTTCCTCCGGATTTCAAAGACGGTTCTTCAGATAGCGATTCAAGTGCAATCTTGAATGACGAAAGCAACGCAGCAATTTCTTCATCTGGGGTTCTTCAAAATCACAACTTTTTGATGTCTCCTGGTTCTTCTTCCTTGAAGTTTAATTGTTCTGAATCGTCGTCATCACCGTCTTCTATGAGTAATTGCTTTCAGTTTCAGACGCAGTTTGTGAAGATGGAAGAGCATAATTTTCTTAGTGCTGATGAGACTTGTGATTTCTTCTCAGATGAACAACCACCAACGCTTCAATGGTATTGTTCAGAGGAGTGGAATTAA

Protein sequence

>Msa0703490

MKRLGSSDSLGALMTICPTTEEESPRNNQVYGREFQSVMEGLDEEGCVDEPGQKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVKELKSRLQIQEENTTTESDVCVKEELITLQESENTASDETAILRSDSKDLNYDCFKNGDGVASLFPPDFKDGSSDSDSSAILNDESNAAISSSGVLQNHNFLMSPGSSSLKFNCSESSSSPSSMSNCFQFQTQFVKMEEHNFLSADETCDFFSDEQPPTLQWYCSEEWN*