Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387750 | XP_003602573.1 | 98.662 | 299 | 4 | 0 | 24 | 322 | 1 | 299 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387750 | sp|O65751|RSSA_CICAR | 89.333 | 300 | 31 | 1 | 24 | 322 | 1 | 300 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387750 | G7JB01 | 98.662 | 299 | 4 | 0 | 24 | 322 | 1 | 299 | 0.0 | 615 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa1387750 | 0.886732 | 2.647271e-72 | -8.615850e-47 |
| Msa0003330 | Msa1387750 | 0.840415 | 8.813967e-58 | -8.615850e-47 |
| Msa0020870 | Msa1387750 | 0.851102 | 1.104292e-60 | -8.615850e-47 |
| Msa0026270 | Msa1387750 | 0.826126 | 3.219310e-54 | -8.615850e-47 |
| Msa0042510 | Msa1387750 | 0.932910 | 4.182794e-95 | -8.615850e-47 |
| Msa0065330 | Msa1387750 | 0.813274 | 2.780738e-51 | -8.615850e-47 |
| Msa0079560 | Msa1387750 | 0.928662 | 2.102901e-92 | -8.615850e-47 |
| Msa0094210 | Msa1387750 | 0.822291 | 2.563010e-53 | -8.615850e-47 |
| Msa0116600 | Msa1387750 | 0.849989 | 2.269418e-60 | -8.615850e-47 |
| Msa0116690 | Msa1387750 | 0.838229 | 3.254889e-57 | -8.615850e-47 |
| Msa1351020 | Msa1387750 | 0.836354 | 9.831221e-57 | -8.615850e-47 |
| Msa1363910 | Msa1387750 | 0.803313 | 3.699936e-49 | -8.615850e-47 |
| Msa1363930 | Msa1387750 | 0.904101 | 1.743771e-79 | -8.615850e-47 |
| Msa1366540 | Msa1387750 | 0.887981 | 8.842882e-73 | -8.615850e-47 |
| Msa1385480 | Msa1387750 | 0.801712 | 7.910057e-49 | -8.615850e-47 |
| Msa1387750 | Msa1390760 | 0.901439 | 2.677533e-78 | -8.615850e-47 |
| Msa1387750 | Msa1403520 | 0.858024 | 1.094104e-62 | -8.615850e-47 |
| Msa1387750 | Msa1407550 | 0.884022 | 2.734488e-71 | -8.615850e-47 |
| Msa1387750 | Msa1413570 | 0.906233 | 1.845696e-80 | -8.615850e-47 |
| Msa1387750 | Msa1423050 | 0.822424 | 2.386444e-53 | -8.615850e-47 |
| Msa1387750 | Msa1432310 | 0.832065 | 1.168971e-55 | -8.615850e-47 |
| Msa1387750 | Msa1445250 | -0.809546 | 1.794056e-50 | -8.615850e-47 |
| Msa1387750 | Msa1446510 | 0.860354 | 2.190132e-63 | -8.615850e-47 |
| Msa1387750 | Msa1450560 | 0.850010 | 2.238322e-60 | -8.615850e-47 |
| Msa1387750 | Msa1453530 | 0.836262 | 1.037490e-56 | -8.615850e-47 |
| Msa1387750 | Msa1463510 | 0.884151 | 2.448605e-71 | -8.615850e-47 |
| Msa1387750 | Msa1465700 | 0.859433 | 4.149627e-63 | -8.615850e-47 |
| Msa1387750 | Msa1465890 | 0.948212 | 1.474709e-106 | -8.615850e-47 |
| Msa0602900 | Msa1387750 | 0.817657 | 2.943214e-52 | -8.615850e-47 |
| Msa0609120 | Msa1387750 | 0.813369 | 2.651013e-51 | -8.615850e-47 |
| Msa0610380 | Msa1387750 | 0.846557 | 2.016016e-59 | -8.615850e-47 |
| Msa0619230 | Msa1387750 | 0.899437 | 1.982965e-77 | -8.615850e-47 |
| Msa0621170 | Msa1387750 | 0.810049 | 1.398461e-50 | -8.615850e-47 |
| Msa0621190 | Msa1387750 | 0.979203 | 1.869849e-147 | -8.615850e-47 |
| Msa0641030 | Msa1387750 | -0.819177 | 1.331906e-52 | -8.615850e-47 |
| Msa0643960 | Msa1387750 | 0.811768 | 5.935291e-51 | -8.615850e-47 |
| Msa0650910 | Msa1387750 | 0.842937 | 1.905782e-58 | -8.615850e-47 |
| Msa0656450 | Msa1387750 | 0.910930 | 1.078798e-82 | -8.615850e-47 |
| Msa0679560 | Msa1387750 | -0.810200 | 1.297506e-50 | -8.615850e-47 |
| Msa0691760 | Msa1387750 | 0.882619 | 8.952158e-71 | -8.615850e-47 |
| Msa0692850 | Msa1387750 | 0.812039 | 5.181640e-51 | -8.615850e-47 |
| Msa0694400 | Msa1387750 | 0.818793 | 1.628276e-52 | -8.615850e-47 |
| Msa0700370 | Msa1387750 | 0.931775 | 2.291188e-94 | -8.615850e-47 |
| Msa0708630 | Msa1387750 | 0.821598 | 3.708329e-53 | -8.615850e-47 |
| Msa0709380 | Msa1387750 | 0.817311 | 3.522004e-52 | -8.615850e-47 |
| Msa0724530 | Msa1387750 | 0.805154 | 1.530520e-49 | -8.615850e-47 |
| Msa0738420 | Msa1387750 | 0.808297 | 3.319445e-50 | -8.615850e-47 |
| Msa0790450 | Msa1387750 | 0.846913 | 1.610895e-59 | -8.615850e-47 |
| Msa0834220 | Msa1387750 | 0.808667 | 2.767206e-50 | -8.615850e-47 |
| Msa0127230 | Msa1387750 | 0.927021 | 2.098392e-91 | -8.615850e-47 |
| Msa0128320 | Msa1387750 | 0.806178 | 9.330035e-50 | -8.615850e-47 |
| Msa0132460 | Msa1387750 | 0.819841 | 9.396850e-53 | -8.615850e-47 |
| Msa0146910 | Msa1387750 | 0.885961 | 5.173699e-72 | -8.615850e-47 |
| Msa0159870 | Msa1387750 | 0.804123 | 2.512428e-49 | -8.615850e-47 |
| Msa0167860 | Msa1387750 | 0.811901 | 5.551087e-51 | -8.615850e-47 |
| Msa0168320 | Msa1387750 | 0.863184 | 2.983730e-64 | -8.615850e-47 |
| Msa0172300 | Msa1387750 | 0.832090 | 1.152332e-55 | -8.615850e-47 |
| Msa0182050 | Msa1387750 | 0.824894 | 6.302853e-54 | -8.615850e-47 |
| Msa0182100 | Msa1387750 | 0.856178 | 3.835753e-62 | -8.615850e-47 |
| Msa0188740 | Msa1387750 | 0.864561 | 1.113305e-64 | -8.615850e-47 |
| Msa0192300 | Msa1387750 | 0.881354 | 2.573441e-70 | -8.615850e-47 |
| Msa0195030 | Msa1387750 | 0.810268 | 1.254340e-50 | -8.615850e-47 |
| Msa0216200 | Msa1387750 | 0.825306 | 5.037738e-54 | -8.615850e-47 |
| Msa0219090 | Msa1387750 | 0.815943 | 7.134566e-52 | -8.615850e-47 |
| Msa0225370 | Msa1387750 | -0.808642 | 2.801325e-50 | -8.615850e-47 |
| Msa0233550 | Msa1387750 | 0.860785 | 1.621588e-63 | -8.615850e-47 |
| Msa0237180 | Msa1387750 | 0.801500 | 8.746394e-49 | -8.615850e-47 |
| Msa1225040 | Msa1387750 | 0.803631 | 3.179852e-49 | -8.615850e-47 |
| Msa1227350 | Msa1387750 | 0.861627 | 8.981201e-64 | -8.615850e-47 |
| Msa1235950 | Msa1387750 | 0.852336 | 4.934928e-61 | -8.615850e-47 |
| Msa1235980 | Msa1387750 | 0.858671 | 7.018118e-63 | -8.615850e-47 |
| Msa1237040 | Msa1387750 | 0.857104 | 2.048344e-62 | -8.615850e-47 |
| Msa1245270 | Msa1387750 | 0.811316 | 7.442242e-51 | -8.615850e-47 |
| Msa1246040 | Msa1387750 | -0.827119 | 1.864966e-54 | -8.615850e-47 |
| Msa1284800 | Msa1387750 | 0.892753 | 1.186264e-74 | -8.615850e-47 |
| Msa1298910 | Msa1387750 | -0.827306 | 1.683084e-54 | -8.615850e-47 |
| Msa1316100 | Msa1387750 | 0.822841 | 1.908908e-53 | -8.615850e-47 |
| Msa1317390 | Msa1387750 | 0.891174 | 5.052624e-74 | -8.615850e-47 |
| Msa1329930 | Msa1387750 | 0.807172 | 5.754969e-50 | -8.615850e-47 |
| Msa1330530 | Msa1387750 | -0.830219 | 3.321423e-55 | -8.615850e-47 |
| Msa0371490 | Msa1387750 | 0.871442 | 6.812245e-67 | -8.615850e-47 |
| Msa0373350 | Msa1387750 | 0.883315 | 4.978270e-71 | -8.615850e-47 |
| Msa0376850 | Msa1387750 | 0.860863 | 1.535431e-63 | -8.615850e-47 |
| Msa0377370 | Msa1387750 | 0.804197 | 2.424543e-49 | -8.615850e-47 |
| Msa0377520 | Msa1387750 | 0.800027 | 1.747079e-48 | -8.615850e-47 |
| Msa0377610 | Msa1387750 | 0.857607 | 1.454571e-62 | -8.615850e-47 |
| Msa0382670 | Msa1387750 | 0.883145 | 5.747020e-71 | -8.615850e-47 |
| Msa0387290 | Msa1387750 | 0.892901 | 1.035051e-74 | -8.615850e-47 |
| Msa0388520 | Msa1387750 | 0.881001 | 3.447266e-70 | -8.615850e-47 |
| Msa0388540 | Msa1387750 | 0.836544 | 8.794424e-57 | -8.615850e-47 |
| Msa0416470 | Msa1387750 | 0.873572 | 1.325371e-67 | -8.615850e-47 |
| Msa0421920 | Msa1387750 | 0.880144 | 6.991786e-70 | -8.615850e-47 |
| Msa0426090 | Msa1387750 | 0.803512 | 3.364811e-49 | -8.615850e-47 |
| Msa0426820 | Msa1387750 | 0.880705 | 4.402716e-70 | -8.615850e-47 |
| Msa0426940 | Msa1387750 | 0.831796 | 1.362578e-55 | -8.615850e-47 |
| Msa0427380 | Msa1387750 | 0.838734 | 2.411493e-57 | -8.615850e-47 |
| Msa0467740 | Msa1387750 | 0.908125 | 2.404961e-81 | -8.615850e-47 |
| Msa0472480 | Msa1387750 | 0.810940 | 8.975699e-51 | -8.615850e-47 |
| Msa0477670 | Msa1387750 | 0.858132 | 1.015922e-62 | -8.615850e-47 |
| Msa0482560 | Msa1387750 | 0.800302 | 1.536272e-48 | -8.615850e-47 |
| Msa0987570 | Msa1387750 | 0.870106 | 1.874669e-66 | -8.615850e-47 |
| Msa0998890 | Msa1387750 | 0.880679 | 4.499884e-70 | -8.615850e-47 |
| Msa1035040 | Msa1387750 | 0.805109 | 1.564328e-49 | -8.615850e-47 |
| Msa1037030 | Msa1387750 | 0.828024 | 1.131455e-54 | -8.615850e-47 |
| Msa1041830 | Msa1387750 | 0.817049 | 4.034165e-52 | -8.615850e-47 |
| Msa1082050 | Msa1387750 | 0.882955 | 6.746577e-71 | -8.615850e-47 |
| Msa0239420 | Msa1387750 | 0.850268 | 1.894926e-60 | -8.615850e-47 |
| Msa0256350 | Msa1387750 | 0.833089 | 6.514261e-56 | -8.615850e-47 |
| Msa0266380 | Msa1387750 | -0.809610 | 1.737877e-50 | -8.615850e-47 |
| Msa0270160 | Msa1387750 | 0.861893 | 7.448182e-64 | -8.615850e-47 |
| Msa0274940 | Msa1387750 | 0.826963 | 2.032599e-54 | -8.615850e-47 |
| Msa0278540 | Msa1387750 | 0.806820 | 6.832770e-50 | -8.615850e-47 |
| Msa0301250 | Msa1387750 | 0.884518 | 1.791089e-71 | -8.615850e-47 |
| Msa0304270 | Msa1387750 | 0.816501 | 5.353546e-52 | -8.615850e-47 |
| Msa0304310 | Msa1387750 | 0.810226 | 1.280497e-50 | -8.615850e-47 |
| Msa0313060 | Msa1387750 | 0.862777 | 3.984661e-64 | -8.615850e-47 |
| Msa0315660 | Msa1387750 | 0.802390 | 5.739449e-49 | -8.615850e-47 |
| Msa0334170 | Msa1387750 | -0.817889 | 2.608714e-52 | -8.615850e-47 |
| Msa0341520 | Msa1387750 | -0.806894 | 6.590865e-50 | -8.615850e-47 |
| Msa0341860 | Msa1387750 | -0.803609 | 3.212624e-49 | -8.615850e-47 |
| Msa1124980 | Msa1387750 | 0.850317 | 1.835762e-60 | -8.615850e-47 |
| Msa1126690 | Msa1387750 | 0.835059 | 2.091561e-56 | -8.615850e-47 |
| Msa1144630 | Msa1387750 | 0.903537 | 3.131534e-79 | -8.615850e-47 |
| Msa1156830 | Msa1387750 | 0.802094 | 6.603702e-49 | -8.615850e-47 |
| Msa1165700 | Msa1387750 | 0.895207 | 1.193351e-75 | -8.615850e-47 |
| Msa1167360 | Msa1387750 | 0.831446 | 1.662063e-55 | -8.615850e-47 |
| Msa1189540 | Msa1387750 | 0.806316 | 8.729038e-50 | -8.615850e-47 |
| Msa1209560 | Msa1387750 | -0.836512 | 8.961934e-57 | -8.615850e-47 |
| Msa1213850 | Msa1387750 | 0.819886 | 9.175229e-53 | -8.615850e-47 |
| Msa0485220 | Msa1387750 | 0.839933 | 1.177857e-57 | -8.615850e-47 |
| Msa0511760 | Msa1387750 | 0.881343 | 2.597774e-70 | -8.615850e-47 |
| Msa0514130 | Msa1387750 | 0.902473 | 9.356300e-79 | -8.615850e-47 |
| Msa0516830 | Msa1387750 | 0.860355 | 2.188211e-63 | -8.615850e-47 |
| Msa0521730 | Msa1387750 | 0.810966 | 8.863664e-51 | -8.615850e-47 |
| Msa0524340 | Msa1387750 | 0.809777 | 1.600301e-50 | -8.615850e-47 |
| Msa0527900 | Msa1387750 | -0.805843 | 1.097572e-49 | -8.615850e-47 |
| Msa0544930 | Msa1387750 | -0.811311 | 7.459326e-51 | -8.615850e-47 |
| Msa0547920 | Msa1387750 | 0.806716 | 7.185728e-50 | -8.615850e-47 |
| Msa0573550 | Msa1387750 | 0.839520 | 1.508689e-57 | -8.615850e-47 |
| Msa0574780 | Msa1387750 | 0.858011 | 1.103572e-62 | -8.615850e-47 |
| Msa0578010 | Msa1387750 | 0.891261 | 4.668115e-74 | -8.615850e-47 |
| Msa0597240 | Msa1387750 | 0.816590 | 5.112249e-52 | -8.615850e-47 |
| Msa0880050 | Msa1387750 | 0.824815 | 6.580427e-54 | -8.615850e-47 |
| Msa0929700 | Msa1387750 | 0.838287 | 3.145414e-57 | -8.615850e-47 |
| Msa0930100 | Msa1387750 | 0.815063 | 1.120238e-51 | -8.615850e-47 |
| Msa0930360 | Msa1387750 | 0.937838 | 1.803806e-98 | -8.615850e-47 |
| Msa0930790 | Msa1387750 | 0.871685 | 5.659656e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387750 | MtrunA17_Chr3g0129861 | 98.662 | 299 | 4 | 0 | 24 | 322 | 1 | 299 | 0.0 | 615 |
| Msa1387750 | MtrunA17_Chr7g0268451 | 93.174 | 293 | 18 | 2 | 32 | 322 | 5 | 297 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387750 | AT3G04770.2 | 75.986 | 279 | 49 | 6 | 30 | 298 | 9 | 279 | 6.22e-149 | 420 |
| Msa1387750 | AT1G72370.2 | 83.750 | 240 | 37 | 2 | 30 | 267 | 8 | 247 | 4.78e-145 | 410 |
| Msa1387750 | AT1G72370.1 | 83.750 | 240 | 37 | 2 | 30 | 267 | 8 | 247 | 5.95e-145 | 410 |
| Msa1387750 | AT3G04770.1 | 88.832 | 197 | 22 | 0 | 30 | 226 | 9 | 205 | 4.58e-131 | 377 |
Find 98 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCCCCGAAAGTAAAATT+TGG | 0.135538 | tig0020938:+2306 | Msa1387750:three_prime_UTR |
| AAATGTTCTTTACCAGCTTC+TGG | 0.204965 | tig0020938:-1864 | Msa1387750:intergenic |
| CTCTTGCTCCTTGGCCTCTT+CGG | 0.208222 | tig0020938:-1691 | Msa1387750:intergenic |
| TTCTTTCAGTTGCAGGGGAC+TGG | 0.226869 | tig0020938:+2161 | Msa1387750:intron |
| ATAGCATCGGTTGTCTCTTT+TGG | 0.249875 | tig0020938:+1445 | Msa1387750:CDS |
| CAGCAGCTCCTGGTGTCAAC+TGG | 0.259408 | tig0020938:+1835 | Msa1387750:CDS |
| GAAATTAAACCATGGTTAAC+TGG | 0.291720 | tig0020938:-2511 | Msa1387750:intergenic |
| TTCACCTGATGGTCAGTTCT+AGG | 0.303947 | tig0020938:-1164 | Msa1387750:intergenic |
| GTTCAATCTGCAAGGCCTTA+TGG | 0.305597 | tig0020938:+1011 | Msa1387750:CDS |
| TCTTGCTCCTTGGCCTCTTC+GGG | 0.307675 | tig0020938:-1690 | Msa1387750:intergenic |
| GGTATTTATATCATTAATCT+TGG | 0.324341 | tig0020938:+918 | Msa1387750:intron |
| TCTTTCAGTTGCAGGGGACT+GGG | 0.335061 | tig0020938:+2162 | Msa1387750:intron |
| GAAGGAAACTTGCATTTGAT+TGG | 0.347451 | tig0020938:-1111 | Msa1387750:intergenic |
| GCATTTCGCCTCCACTTGTT+TGG | 0.348769 | tig0020938:+2460 | Msa1387750:three_prime_UTR |
| TTCATCCTCCTCTTGCTCCT+TGG | 0.369266 | tig0020938:-1700 | Msa1387750:intergenic |
| ATTTGATTGGTAAAGGTTCC+AGG | 0.371234 | tig0020938:-1098 | Msa1387750:intergenic |
| GCTGTCACAGATTCAATTCC+AGG | 0.382679 | tig0020938:-2220 | Msa1387750:intergenic |
| ATTGAATCTGTGACAGCAAC+TGG | 0.400686 | tig0020938:+2226 | Msa1387750:CDS |
| TCCAAGAGCAGCTTCCTTGA+TGG | 0.403359 | tig0020938:-1337 | Msa1387750:intergenic |
| CCCATCAAGGAAGCTGCTCT+TGG | 0.405552 | tig0020938:+1336 | Msa1387750:CDS |
| AATGTTCTTTACCAGCTTCT+GGG | 0.407962 | tig0020938:-1863 | Msa1387750:intergenic |
| ACACCAGGAGCTGCTGGAAT+AGG | 0.410453 | tig0020938:-1828 | Msa1387750:intergenic |
| TGCTTTCCCTTGTTGTTAGC+GGG | 0.413093 | tig0020938:-1423 | Msa1387750:intergenic |
| CTTCCCCGAAAGTAAAATTT+GGG | 0.414595 | tig0020938:+2307 | Msa1387750:three_prime_UTR |
| GGTGCTTTGATTTCTAGTAT+AGG | 0.415180 | tig0020938:+2578 | Msa1387750:three_prime_UTR |
| CCAAGAGCAGCTTCCTTGAT+GGG | 0.417623 | tig0020938:-1336 | Msa1387750:intergenic |
| ACTGGAGCTAATGCTATTGC+AGG | 0.451070 | tig0020938:+1065 | Msa1387750:CDS |
| CAGTTGACACCAGGAGCTGC+TGG | 0.455088 | tig0020938:-1834 | Msa1387750:intergenic |
| GCCATTGCTGACTTCAATGC+TGG | 0.456055 | tig0020938:+1741 | Msa1387750:CDS |
| TGTGGTGCTGCATCAGTCCA+TGG | 0.469309 | tig0020938:-1804 | Msa1387750:intergenic |
| AATCTGTGACAGCAACTGGC+TGG | 0.470930 | tig0020938:+2230 | Msa1387750:CDS |
| GTGGGAATTTGTTGCGGTGG+TGG | 0.473747 | tig0020938:-2196 | Msa1387750:intergenic |
| AACTTGCATTTGATTGGTAA+AGG | 0.474388 | tig0020938:-1105 | Msa1387750:intergenic |
| CAGATTGAACAATAATGTCC+TGG | 0.474422 | tig0020938:-998 | Msa1387750:intergenic |
| CTTAAGTTTGCTCAGTACAC+TGG | 0.477075 | tig0020938:+1047 | Msa1387750:CDS |
| AACTGGGCTGCCCCAGAAGC+TGG | 0.477922 | tig0020938:+1852 | Msa1387750:CDS |
| AGCAGCTCCTGGTGTCAACT+GGG | 0.479182 | tig0020938:+1836 | Msa1387750:CDS |
| CAGCCTATTCCAGCAGCTCC+TGG | 0.483642 | tig0020938:+1825 | Msa1387750:CDS |
| CCGCAACAAATTCCCACTCC+TGG | 0.483783 | tig0020938:+2202 | Msa1387750:CDS |
| CCAATGTCAACATATCTCAT+AGG | 0.485555 | tig0020938:-1396 | Msa1387750:intergenic |
| AGTGTATTCTTTCAGTTGCA+GGG | 0.499899 | tig0020938:+2155 | Msa1387750:intron |
| AGAAACTTCAACTAGCTGCC+AGG | 0.503788 | tig0020938:+952 | Msa1387750:CDS |
| ATGCTTTCCCTTGTTGTTAG+CGG | 0.513106 | tig0020938:-1424 | Msa1387750:intergenic |
| CTTTCAGTTGCAGGGGACTG+GGG | 0.513229 | tig0020938:+2163 | Msa1387750:intron |
| CCTATGAGATATGTTGACAT+TGG | 0.514354 | tig0020938:+1396 | Msa1387750:CDS |
| TGATCCTAGAACTGACCATC+AGG | 0.519085 | tig0020938:+1160 | Msa1387750:CDS |
| AATGCTGGTGGTCCATCTGA+TGG | 0.520603 | tig0020938:+1756 | Msa1387750:CDS |
| AAGGGAAGTAAAATTAACTG+TGG | 0.525039 | tig0020938:-2287 | Msa1387750:intergenic |
| AGAACGGCTCTCTGTCCATA+AGG | 0.525873 | tig0020938:-1026 | Msa1387750:intergenic |
| CGAAGAGGCCAAGGAGCAAG+AGG | 0.529876 | tig0020938:+1692 | Msa1387750:CDS |
| ATCTGTGACAGCAACTGGCT+GGG | 0.531636 | tig0020938:+2231 | Msa1387750:CDS |
| GTGTCACAGAAAGCAATAGT+TGG | 0.533846 | tig0020938:-1366 | Msa1387750:intergenic |
| ATCACATCCCACTTAAGACC+TGG | 0.536430 | tig0020938:-1510 | Msa1387750:intergenic |
| GGGGCAGCCCAGTTGACACC+AGG | 0.539769 | tig0020938:-1843 | Msa1387750:intergenic |
| TAGAGAACCCGAAGAGGCCA+AGG | 0.540338 | tig0020938:+1683 | Msa1387750:CDS |
| CTATTCGCCCAGGTCTTAAG+TGG | 0.540613 | tig0020938:+1502 | Msa1387750:CDS |
| AGATTGAACAATAATGTCCT+GGG | 0.542615 | tig0020938:-997 | Msa1387750:intergenic |
| CCAGGAGTGGGAATTTGTTG+CGG | 0.543589 | tig0020938:-2202 | Msa1387750:intergenic |
| AGGTCTTAAGTGGGATGTGA+TGG | 0.569141 | tig0020938:+1512 | Msa1387750:CDS |
| TGGAATTCCCGCTAACAACA+AGG | 0.570440 | tig0020938:+1416 | Msa1387750:CDS |
| GTGTATTCTTTCAGTTGCAG+GGG | 0.570945 | tig0020938:+2156 | Msa1387750:intron |
| TGTTTGTTTGCAGCCCATCA+AGG | 0.579519 | tig0020938:+1323 | Msa1387750:intron |
| CACAGATTCAATTCCAGGAG+TGG | 0.579651 | tig0020938:-2215 | Msa1387750:intergenic |
| GCAATGGCATAATCTAGAGC+AGG | 0.581740 | tig0020938:-1726 | Msa1387750:intergenic |
| GTGGTCCATCTGATGGTCAG+TGG | 0.581948 | tig0020938:+1763 | Msa1387750:CDS |
| ATGCGTGGTACTATTCGCCC+AGG | 0.584833 | tig0020938:+1492 | Msa1387750:CDS |
| CTCGATTGCAACGATGACCC+TGG | 0.587596 | tig0020938:-970 | Msa1387750:intergenic |
| ATGTTCTTTACCAGCTTCTG+GGG | 0.588593 | tig0020938:-1862 | Msa1387750:intergenic |
| GAGAAGACGAGGCTCACTGA+AGG | 0.589438 | tig0020938:-1129 | Msa1387750:intergenic |
| ACAGATTCAATTCCAGGAGT+GGG | 0.591012 | tig0020938:-2214 | Msa1387750:intergenic |
| AACAAGGGAAAGCATAGCAT+CGG | 0.599533 | tig0020938:+1432 | Msa1387750:CDS |
| AGAGGCCAAGGAGCAAGAGG+AGG | 0.600295 | tig0020938:+1695 | Msa1387750:CDS |
| GAAACTTCAACTAGCTGCCA+GGG | 0.600433 | tig0020938:+953 | Msa1387750:CDS |
| GGAGCTGCTGGAATAGGCTG+TGG | 0.601218 | tig0020938:-1822 | Msa1387750:intergenic |
| ACATTATTGTTCAATCTGCA+AGG | 0.601975 | tig0020938:+1003 | Msa1387750:CDS |
| ATTGCTGACTTCAATGCTGG+TGG | 0.602149 | tig0020938:+1744 | Msa1387750:CDS |
| CTACTGCAATTGAGCAGCCA+TGG | 0.603201 | tig0020938:+1787 | Msa1387750:CDS |
| AGGGAAGTAAAATTAACTGT+GGG | 0.604132 | tig0020938:-2286 | Msa1387750:intergenic |
| GGAGTGGGAATTTGTTGCGG+TGG | 0.607574 | tig0020938:-2199 | Msa1387750:intergenic |
| TCACATCCCACTTAAGACCT+GGG | 0.607979 | tig0020938:-1509 | Msa1387750:intergenic |
| TTCTTCTAGTATGTTACGGG+TGG | 0.610121 | tig0020938:+2357 | Msa1387750:three_prime_UTR |
| CAACTTACTCCAGTTAACCA+TGG | 0.612131 | tig0020938:+2502 | Msa1387750:three_prime_UTR |
| CATGGCTGCTCAATTGCAGT+AGG | 0.613104 | tig0020938:-1786 | Msa1387750:intergenic |
| TTTATTCTGAAATTAAACCA+TGG | 0.614267 | tig0020938:-2519 | Msa1387750:intergenic |
| ATTGCAGGTAGACACACTCC+TGG | 0.622813 | tig0020938:+1080 | Msa1387750:CDS |
| GTAGGCCACTGACCATCAGA+TGG | 0.625414 | tig0020938:-1768 | Msa1387750:intergenic |
| CACGTATGCCAAACAAGTGG+AGG | 0.630545 | tig0020938:-2468 | Msa1387750:intergenic |
| ACCAGCATTGAAGTCAGCAA+TGG | 0.630888 | tig0020938:-1742 | Msa1387750:intergenic |
| GGAATTCCCGCTAACAACAA+GGG | 0.640044 | tig0020938:+1417 | Msa1387750:CDS |
| GTACTGAGCAAACTTAAGAA+CGG | 0.651453 | tig0020938:-1042 | Msa1387750:intergenic |
| GGAAGTAAAATTAACTGTGG+GGG | 0.652093 | tig0020938:-2284 | Msa1387750:intergenic |
| GATTGAACAATAATGTCCTG+GGG | 0.658645 | tig0020938:-996 | Msa1387750:intergenic |
| CAACACGTATGCCAAACAAG+TGG | 0.661858 | tig0020938:-2471 | Msa1387750:intergenic |
| TATTCGCCCAGGTCTTAAGT+GGG | 0.666814 | tig0020938:+1503 | Msa1387750:CDS |
| TCAGTGAGGATGAGAAGACG+AGG | 0.674872 | tig0020938:-1140 | Msa1387740:intergenic |
| GGGAAGTAAAATTAACTGTG+GGG | 0.708133 | tig0020938:-2285 | Msa1387740:intergenic |
| ATTGAACAATAATGTCCTGG+GGG | 0.723405 | tig0020938:-995 | Msa1387740:intergenic |
| GGTCAGTTCTAGGATCAGTG+AGG | 0.760014 | tig0020938:-1154 | Msa1387740:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTTTTGTTTTAATTT+AGG | + | tig0020938:897-916 | Msa1387750:intron | 10.0% |
| !! | ATAAAAAAAATGAATACATA+TGG | - | tig0020938:2129-2148 | Msa1387750:intergenic | 10.0% |
| !!! | AGGATAATTAATTACAATTT+TGG | + | tig0020938:386-405 | Msa1387750:intron | 15.0% |
| !!! | CTATATTTTTTTGTTGTTTT+AGG | + | tig0020938:1229-1248 | Msa1387750:intron | 15.0% |
| !!! | ATTTTAAAAGATGACAATAA+CGG | - | tig0020938:1997-2016 | Msa1387750:intergenic | 15.0% |
| !!! | TTTTATAGGTTAAAGCTTAT+AGG | - | tig0020938:555-574 | Msa1387750:intergenic | 20.0% |
| !! | AAAACTCATATTTAAGCTAA+TGG | - | tig0020938:690-709 | Msa1387750:intergenic | 20.0% |
| !! | TTGTAATGATGATATAATCA+AGG | - | tig0020938:810-829 | Msa1387750:intergenic | 20.0% |
| !! | GGTATTTATATCATTAATCT+TGG | + | tig0020938:918-937 | Msa1387750:intron | 20.0% |
| !!! | TTGCTTGTTAATATCAATTA+TGG | + | tig0020938:1206-1225 | Msa1387750:intron | 20.0% |
| !! | TTAAGAAAAACATTAGACAA+TGG | - | tig0020938:1641-1660 | Msa1387750:intergenic | 20.0% |
| !! | ATTTCTCTTCAACTTTAATT+TGG | + | tig0020938:1939-1958 | Msa1387750:intron | 20.0% |
| !!! | TTTCTCTTCAACTTTAATTT+GGG | + | tig0020938:1940-1959 | Msa1387750:intron | 20.0% |
| !! | AAAACAAATTGAAGATCAAA+GGG | - | tig0020938:1970-1989 | Msa1387750:intergenic | 20.0% |
| !! | TAAAACAAATTGAAGATCAA+AGG | - | tig0020938:1971-1990 | Msa1387750:intergenic | 20.0% |
| !!! | ACAATTTTACTTAAAATCTC+AGG | - | tig0020938:2401-2420 | Msa1387750:intergenic | 20.0% |
| !!! | TTTATTCTGAAATTAAACCA+TGG | - | tig0020938:2522-2541 | Msa1387750:intergenic | 20.0% |
| !!! | TCAGAATAAATTTTTAGTGT+AGG | + | tig0020938:2532-2551 | Msa1387750:three_prime_UTR | 20.0% |
| !!! | AAATTTTTAGTGTAGGAATA+TGG | + | tig0020938:2539-2558 | Msa1387750:three_prime_UTR | 20.0% |
| !!! | TATGGTTTTTTACATGTATA+CGG | + | tig0020938:2557-2576 | Msa1387750:three_prime_UTR | 20.0% |
| ! | ATTAAGAAACACAATACTAG+AGG | - | tig0020938:274-293 | Msa1387750:intergenic | 25.0% |
| !! | TTAACAATCTAGTAGTTTGT+AGG | + | tig0020938:366-385 | Msa1387750:intron | 25.0% |
| !! | AATTCTGTAAAACGGTTTTT+AGG | + | tig0020938:453-472 | Msa1387750:intron | 25.0% |
| !!! | TTTGCGTTTTGTTTGTTTTA+CGG | + | tig0020938:728-747 | Msa1387750:intron | 25.0% |
| ! | AATGTTCAGTAGACTAAATA+TGG | + | tig0020938:863-882 | Msa1387750:intron | 25.0% |
| ! | TCATTAATCTTGGAAAAACT+TGG | + | tig0020938:928-947 | Msa1387750:CDS | 25.0% |
| ! | CATTAATCTTGGAAAAACTT+GGG | + | tig0020938:929-948 | Msa1387750:CDS | 25.0% |
| ! | ATTAACAAGCAAACATGTTA+AGG | - | tig0020938:1198-1217 | Msa1387750:intergenic | 25.0% |
| ! | GGCTTATATATTTCCTTTAT+TGG | + | tig0020938:1250-1269 | Msa1387750:intron | 25.0% |
| !! | TCTAATGTTTTTCTTAATGC+AGG | + | tig0020938:1644-1663 | Msa1387750:intron | 25.0% |
| !! | AAAAATCTTGAGTTTAGGTT+AGG | - | tig0020938:1915-1934 | Msa1387750:intergenic | 25.0% |
| !!! | AACCTAAACTCAAGATTTTT+TGG | + | tig0020938:1915-1934 | Msa1387750:intron | 25.0% |
| !!! | TAAAATTTGGGTCAGTTTTT+TGG | + | tig0020938:2319-2338 | Msa1387750:three_prime_UTR | 25.0% |
| !! | CATTTTCTTCTAGTATGTTA+CGG | + | tig0020938:2353-2372 | Msa1387750:three_prime_UTR | 25.0% |
| !! | ATTTTCTTCTAGTATGTTAC+GGG | + | tig0020938:2354-2373 | Msa1387750:three_prime_UTR | 25.0% |
| TGTTAAGAATCGAGATTAAG+TGG | + | tig0020938:322-341 | Msa1387750:intron | 30.0% | |
| ! | CTGTTTGGAATTCTGTAAAA+CGG | + | tig0020938:445-464 | Msa1387750:intron | 30.0% |
| !!! | CCAATGCTACACTTTTTTAT+AGG | - | tig0020938:569-588 | Msa1387750:intergenic | 30.0% |
| ! | CCTATAAAAAAGTGTAGCAT+TGG | + | tig0020938:566-585 | Msa1387750:intron | 30.0% |
| ACAAACAAAACGCAAAACTA+AGG | - | tig0020938:724-743 | Msa1387750:intergenic | 30.0% | |
| ACACAAGGTGTAACTTAATT+GGG | - | tig0020938:780-799 | Msa1387750:intergenic | 30.0% | |
| AACACAAGGTGTAACTTAAT+TGG | - | tig0020938:781-800 | Msa1387750:intergenic | 30.0% | |
| ATTAAGTTACACCTTGTGTT+TGG | + | tig0020938:781-800 | Msa1387750:intron | 30.0% | |
| TTAAGTTACACCTTGTGTTT+GGG | + | tig0020938:782-801 | Msa1387750:intron | 30.0% | |
| AGATTGAACAATAATGTCCT+GGG | - | tig0020938:1000-1019 | Msa1387750:intergenic | 30.0% | |
| ACATTATTGTTCAATCTGCA+AGG | + | tig0020938:1003-1022 | Msa1387750:CDS | 30.0% | |
| AACTTGCATTTGATTGGTAA+AGG | - | tig0020938:1108-1127 | Msa1387750:intergenic | 30.0% | |
| AGCAAACATGTTAAGGATAA+TGG | - | tig0020938:1191-1210 | Msa1387750:intergenic | 30.0% | |
| GCACAAATATCAACCAATAA+AGG | - | tig0020938:1266-1285 | Msa1387750:intergenic | 30.0% | |
| !! | TTGTGCATTTCGCTTTTATA+AGG | + | tig0020938:1280-1299 | Msa1387750:intron | 30.0% |
| TGCCAAAAAATCTTGAGTTT+AGG | - | tig0020938:1920-1939 | Msa1387750:intergenic | 30.0% | |
| AGGGAAGTAAAATTAACTGT+GGG | - | tig0020938:2289-2308 | Msa1387750:intergenic | 30.0% | |
| AAGGGAAGTAAAATTAACTG+TGG | - | tig0020938:2290-2309 | Msa1387750:intergenic | 30.0% | |
| ! | ACTGACCCAAATTTTACTTT+CGG | - | tig0020938:2315-2334 | Msa1387750:intergenic | 30.0% |
| GAAATTAAACCATGGTTAAC+TGG | - | tig0020938:2514-2533 | Msa1387750:intergenic | 30.0% | |
| TGAAGCAATAACGTTCCATT+TGG | - | tig0020938:179-198 | Msa1387750:intergenic | 35.0% | |
| TTTGAAAGTTACCATCGTTG+CGG | - | tig0020938:206-225 | Msa1387750:intergenic | 35.0% | |
| ATTGAACAATAATGTCCTGG+GGG | - | tig0020938:998-1017 | Msa1387750:intergenic | 35.0% | |
| GATTGAACAATAATGTCCTG+GGG | - | tig0020938:999-1018 | Msa1387750:intergenic | 35.0% | |
| CAGATTGAACAATAATGTCC+TGG | - | tig0020938:1001-1020 | Msa1387750:intergenic | 35.0% | |
| GTACTGAGCAAACTTAAGAA+CGG | - | tig0020938:1045-1064 | Msa1387750:intergenic | 35.0% | |
| ATTTGATTGGTAAAGGTTCC+AGG | - | tig0020938:1101-1120 | Msa1387750:intergenic | 35.0% | |
| GAAGGAAACTTGCATTTGAT+TGG | - | tig0020938:1114-1133 | Msa1387750:intergenic | 35.0% | |
| CCAATGTCAACATATCTCAT+AGG | - | tig0020938:1399-1418 | Msa1387750:intergenic | 35.0% | |
| CCTATGAGATATGTTGACAT+TGG | + | tig0020938:1396-1415 | Msa1387750:CDS | 35.0% | |
| AATGTTCTTTACCAGCTTCT+GGG | - | tig0020938:1866-1885 | Msa1387750:intergenic | 35.0% | |
| AAATGTTCTTTACCAGCTTC+TGG | - | tig0020938:1867-1886 | Msa1387750:intergenic | 35.0% | |
| GAGTGTAGTAATGATGTCTT+GGG | - | tig0020938:2033-2052 | Msa1387750:intergenic | 35.0% | |
| TGAGTGTAGTAATGATGTCT+TGG | - | tig0020938:2034-2053 | Msa1387750:intergenic | 35.0% | |
| TAGTGTATTCTTTCAGTTGC+AGG | + | tig0020938:2154-2173 | Msa1387750:intron | 35.0% | |
| AGTGTATTCTTTCAGTTGCA+GGG | + | tig0020938:2155-2174 | Msa1387750:intron | 35.0% | |
| GGAAGTAAAATTAACTGTGG+GGG | - | tig0020938:2287-2306 | Msa1387750:intergenic | 35.0% | |
| GGGAAGTAAAATTAACTGTG+GGG | - | tig0020938:2288-2307 | Msa1387750:intergenic | 35.0% | |
| ! | CAAATTTTACTTTCGGGGAA+GGG | - | tig0020938:2308-2327 | Msa1387750:intergenic | 35.0% |
| CTTCCCCGAAAGTAAAATTT+GGG | + | tig0020938:2307-2326 | Msa1387750:three_prime_UTR | 35.0% | |
| ! | TGACCCAAATTTTACTTTCG+GGG | - | tig0020938:2313-2332 | Msa1387750:intergenic | 35.0% |
| ! | CTGACCCAAATTTTACTTTC+GGG | - | tig0020938:2314-2333 | Msa1387750:intergenic | 35.0% |
| !! | GGTGCTTTGATTTCTAGTAT+AGG | + | tig0020938:2578-2597 | Msa1387750:three_prime_UTR | 35.0% |
| CAGTAGACAGCATTCAATCA+TGG | + | tig0020938:53-72 | Msa1387750:CDS | 40.0% | |
| !! | TTCTTTTTGAGAGAGCTGAC+GGG | - | tig0020938:97-116 | Msa1387750:intergenic | 40.0% |
| !! | CTTCTTTTTGAGAGAGCTGA+CGG | - | tig0020938:98-117 | Msa1387750:intergenic | 40.0% |
| TAAGAACTGCGACTTCCAAA+TGG | + | tig0020938:161-180 | Msa1387750:CDS | 40.0% | |
| ! | GTTGCACTTTCATTTTGTGC+TGG | + | tig0020938:420-439 | Msa1387750:intron | 40.0% |
| !! | AACGGTTTTTAGGCTCTGTT+TGG | + | tig0020938:463-482 | Msa1387750:intron | 40.0% |
| ! | TTTTAGGCTCTGTTTGGTAG+CGG | + | tig0020938:469-488 | Msa1387750:intron | 40.0% |
| CGCAAAACTAAGGATCTGTT+TGG | - | tig0020938:714-733 | Msa1387750:intergenic | 40.0% | |
| AATCAAGGAACCCAAACACA+AGG | - | tig0020938:795-814 | Msa1387750:intergenic | 40.0% | |
| ! | CTTAAGTTTGCTCAGTACAC+TGG | + | tig0020938:1047-1066 | Msa1387750:CDS | 40.0% |
| ! | AGGATAATGGTTTCACCTGA+TGG | - | tig0020938:1178-1197 | Msa1387750:intergenic | 40.0% |
| GTGTCACAGAAAGCAATAGT+TGG | - | tig0020938:1369-1388 | Msa1387750:intergenic | 40.0% | |
| !! | ATGCTTTCCCTTGTTGTTAG+CGG | - | tig0020938:1427-1446 | Msa1387750:intergenic | 40.0% |
| ! | AACAAGGGAAAGCATAGCAT+CGG | + | tig0020938:1432-1451 | Msa1387750:CDS | 40.0% |
| !!! | ATAGCATCGGTTGTCTCTTT+TGG | + | tig0020938:1445-1464 | Msa1387750:CDS | 40.0% |
| ACACAGTGCTGTGTAAAGAA+GGG | - | tig0020938:1618-1637 | Msa1387750:intergenic | 40.0% | |
| ! | CTTTTATAGAGAACCCGAAG+AGG | + | tig0020938:1677-1696 | Msa1387750:CDS | 40.0% |
| ATGTTCTTTACCAGCTTCTG+GGG | - | tig0020938:1865-1884 | Msa1387750:intergenic | 40.0% | |
| GTGTATTCTTTCAGTTGCAG+GGG | + | tig0020938:2156-2175 | Msa1387750:intron | 40.0% | |
| ACAGATTCAATTCCAGGAGT+GGG | - | tig0020938:2217-2236 | Msa1387750:intergenic | 40.0% | |
| ATTGAATCTGTGACAGCAAC+TGG | + | tig0020938:2226-2245 | Msa1387750:CDS | 40.0% | |
| ! | CCAAATTTTACTTTCGGGGA+AGG | - | tig0020938:2309-2328 | Msa1387750:intergenic | 40.0% |
| CCTTCCCCGAAAGTAAAATT+TGG | + | tig0020938:2306-2325 | Msa1387750:three_prime_UTR | 40.0% | |
| TTCTTCTAGTATGTTACGGG+TGG | + | tig0020938:2357-2376 | Msa1387750:three_prime_UTR | 40.0% | |
| CAACTTACTCCAGTTAACCA+TGG | + | tig0020938:2502-2521 | Msa1387750:three_prime_UTR | 40.0% | |
| GAATCTCCGAAACTTGGATG+CGG | - | tig0020938:19-38 | Msa1387750:intergenic | 45.0% | |
| GATTGAATGCTGTCTACTGC+CGG | - | tig0020938:52-71 | Msa1387750:intergenic | 45.0% | |
| AGCTGACATCCAGATGATGT+TGG | + | tig0020938:116-135 | Msa1387750:CDS | 45.0% | |
| !!! | CATTTTGTGCTGGCTCTGTT+TGG | + | tig0020938:430-449 | Msa1387750:intron | 45.0% |
| AGAAACTTCAACTAGCTGCC+AGG | + | tig0020938:952-971 | Msa1387750:CDS | 45.0% | |
| GAAACTTCAACTAGCTGCCA+GGG | + | tig0020938:953-972 | Msa1387750:CDS | 45.0% | |
| GTTCAATCTGCAAGGCCTTA+TGG | + | tig0020938:1011-1030 | Msa1387750:CDS | 45.0% | |
| ACTGGAGCTAATGCTATTGC+AGG | + | tig0020938:1065-1084 | Msa1387750:CDS | 45.0% | |
| TGATCCTAGAACTGACCATC+AGG | + | tig0020938:1160-1179 | Msa1387750:CDS | 45.0% | |
| TTCACCTGATGGTCAGTTCT+AGG | - | tig0020938:1167-1186 | Msa1387750:intergenic | 45.0% | |
| TGTTTGTTTGCAGCCCATCA+AGG | + | tig0020938:1323-1342 | Msa1387750:intron | 45.0% | |
| TGGAATTCCCGCTAACAACA+AGG | + | tig0020938:1416-1435 | Msa1387750:CDS | 45.0% | |
| GGAATTCCCGCTAACAACAA+GGG | + | tig0020938:1417-1436 | Msa1387750:CDS | 45.0% | |
| !! | TGCTTTCCCTTGTTGTTAGC+GGG | - | tig0020938:1426-1445 | Msa1387750:intergenic | 45.0% |
| !!! | CGGTTGTCTCTTTTGGCTTT+TGG | + | tig0020938:1452-1471 | Msa1387750:CDS | 45.0% |
| !!! | GTCTCTTTTGGCTTTTGGCT+AGG | + | tig0020938:1457-1476 | Msa1387750:CDS | 45.0% |
| !!! | CTTTTGGCTTTTGGCTAGGA+TGG | + | tig0020938:1461-1480 | Msa1387750:CDS | 45.0% |
| TATTCGCCCAGGTCTTAAGT+GGG | + | tig0020938:1503-1522 | Msa1387750:CDS | 45.0% | |
| TCACATCCCACTTAAGACCT+GGG | - | tig0020938:1512-1531 | Msa1387750:intergenic | 45.0% | |
| ATCACATCCCACTTAAGACC+TGG | - | tig0020938:1513-1532 | Msa1387750:intergenic | 45.0% | |
| AGGTCTTAAGTGGGATGTGA+TGG | + | tig0020938:1512-1531 | Msa1387750:CDS | 45.0% | |
| GACACAGTGCTGTGTAAAGA+AGG | - | tig0020938:1619-1638 | Msa1387750:intergenic | 45.0% | |
| ! | GCAATGGCATAATCTAGAGC+AGG | - | tig0020938:1729-1748 | Msa1387750:intergenic | 45.0% |
| ! | ACCAGCATTGAAGTCAGCAA+TGG | - | tig0020938:1745-1764 | Msa1387750:intergenic | 45.0% |
| !! | ATTGCTGACTTCAATGCTGG+TGG | + | tig0020938:1744-1763 | Msa1387750:CDS | 45.0% |
| CACAGATTCAATTCCAGGAG+TGG | - | tig0020938:2218-2237 | Msa1387750:intergenic | 45.0% | |
| GCTGTCACAGATTCAATTCC+AGG | - | tig0020938:2223-2242 | Msa1387750:intergenic | 45.0% | |
| CAACACGTATGCCAAACAAG+TGG | - | tig0020938:2474-2493 | Msa1387750:intergenic | 45.0% | |
| !! | AGAGTGCCGCATCCAAGTTT+CGG | + | tig0020938:10-29 | Msa1387750:CDS | 50.0% |
| CATCAGCAGCCAACATCATC+TGG | - | tig0020938:128-147 | Msa1387750:intergenic | 50.0% | |
| AGAACGGCTCTCTGTCCATA+AGG | - | tig0020938:1029-1048 | Msa1387750:intergenic | 50.0% | |
| ATTGCAGGTAGACACACTCC+TGG | + | tig0020938:1080-1099 | Msa1387750:CDS | 50.0% | |
| TCAGTGAGGATGAGAAGACG+AGG | - | tig0020938:1143-1162 | Msa1387750:intergenic | 50.0% | |
| !! | GGTCAGTTCTAGGATCAGTG+AGG | - | tig0020938:1157-1176 | Msa1387750:intergenic | 50.0% |
| CCAAGAGCAGCTTCCTTGAT+GGG | - | tig0020938:1339-1358 | Msa1387750:intergenic | 50.0% | |
| TCCAAGAGCAGCTTCCTTGA+TGG | - | tig0020938:1340-1359 | Msa1387750:intergenic | 50.0% | |
| !! | AGGATGGTTTTGCAGATGCG+TGG | + | tig0020938:1477-1496 | Msa1387750:CDS | 50.0% |
| CTATTCGCCCAGGTCTTAAG+TGG | + | tig0020938:1502-1521 | Msa1387750:CDS | 50.0% | |
| TTCATCCTCCTCTTGCTCCT+TGG | - | tig0020938:1703-1722 | Msa1387750:intergenic | 50.0% | |
| !! | GCCATTGCTGACTTCAATGC+TGG | + | tig0020938:1741-1760 | Msa1387750:CDS | 50.0% |
| AATGCTGGTGGTCCATCTGA+TGG | + | tig0020938:1756-1775 | Msa1387750:CDS | 50.0% | |
| CATGGCTGCTCAATTGCAGT+AGG | - | tig0020938:1789-1808 | Msa1387750:intergenic | 50.0% | |
| CTACTGCAATTGAGCAGCCA+TGG | + | tig0020938:1787-1806 | Msa1387750:CDS | 50.0% | |
| TTCTTTCAGTTGCAGGGGAC+TGG | + | tig0020938:2161-2180 | Msa1387750:intron | 50.0% | |
| TCTTTCAGTTGCAGGGGACT+GGG | + | tig0020938:2162-2181 | Msa1387750:intron | 50.0% | |
| !! | CCAGGAGTGGGAATTTGTTG+CGG | - | tig0020938:2205-2224 | Msa1387750:intergenic | 50.0% |
| AATCTGTGACAGCAACTGGC+TGG | + | tig0020938:2230-2249 | Msa1387750:CDS | 50.0% | |
| ATCTGTGACAGCAACTGGCT+GGG | + | tig0020938:2231-2250 | Msa1387750:CDS | 50.0% | |
| GCATTTCGCCTCCACTTGTT+TGG | + | tig0020938:2460-2479 | Msa1387750:three_prime_UTR | 50.0% | |
| CACGTATGCCAAACAAGTGG+AGG | - | tig0020938:2471-2490 | Msa1387750:intergenic | 50.0% | |
| GGGAGCGAATCTCCGAAACT+TGG | - | tig0020938:25-44 | Msa1387750:intergenic | 55.0% | |
| CTGACGGGATGAGAGCTGTT+CGG | - | tig0020938:82-101 | Msa1387750:intergenic | 55.0% | |
| TTGGCTGCTGATGTCCACCT+CGG | + | tig0020938:135-154 | Msa1387750:CDS | 55.0% | |
| AGTCGCAGTTCTTAGTGCCG+AGG | - | tig0020938:155-174 | Msa1387750:intergenic | 55.0% | |
| TGCTTCAAACGCCGCAACGA+TGG | + | tig0020938:192-211 | Msa1387750:CDS | 55.0% | |
| CTCGATTGCAACGATGACCC+TGG | - | tig0020938:973-992 | Msa1387750:intergenic | 55.0% | |
| GAGAAGACGAGGCTCACTGA+AGG | - | tig0020938:1132-1151 | Msa1387750:intergenic | 55.0% | |
| CCCATCAAGGAAGCTGCTCT+TGG | + | tig0020938:1336-1355 | Msa1387750:CDS | 55.0% | |
| ATGCGTGGTACTATTCGCCC+AGG | + | tig0020938:1492-1511 | Msa1387750:CDS | 55.0% | |
| TAGAGAACCCGAAGAGGCCA+AGG | + | tig0020938:1683-1702 | Msa1387750:CDS | 55.0% | |
| TCTTGCTCCTTGGCCTCTTC+GGG | - | tig0020938:1693-1712 | Msa1387750:intergenic | 55.0% | |
| CTCTTGCTCCTTGGCCTCTT+CGG | - | tig0020938:1694-1713 | Msa1387750:intergenic | 55.0% | |
| GTGGTCCATCTGATGGTCAG+TGG | + | tig0020938:1763-1782 | Msa1387750:CDS | 55.0% | |
| GTAGGCCACTGACCATCAGA+TGG | - | tig0020938:1771-1790 | Msa1387750:intergenic | 55.0% | |
| !! | TGTGGTGCTGCATCAGTCCA+TGG | - | tig0020938:1807-1826 | Msa1387750:intergenic | 55.0% |
| ACACCAGGAGCTGCTGGAAT+AGG | - | tig0020938:1831-1850 | Msa1387750:intergenic | 55.0% | |
| ! | AGCAGCTCCTGGTGTCAACT+GGG | + | tig0020938:1836-1855 | Msa1387750:CDS | 55.0% |
| CTTTCAGTTGCAGGGGACTG+GGG | + | tig0020938:2163-2182 | Msa1387750:intron | 55.0% | |
| !! | GTGGGAATTTGTTGCGGTGG+TGG | - | tig0020938:2199-2218 | Msa1387750:intergenic | 55.0% |
| !! | GGAGTGGGAATTTGTTGCGG+TGG | - | tig0020938:2202-2221 | Msa1387750:intergenic | 55.0% |
| CCGCAACAAATTCCCACTCC+TGG | + | tig0020938:2202-2221 | Msa1387750:CDS | 55.0% | |
| ATGCTGTCTACTGCCGGCGA+CGG | - | tig0020938:46-65 | Msa1387750:intergenic | 60.0% | |
| ! | CGCAGTTCTTAGTGCCGAGG+TGG | - | tig0020938:152-171 | Msa1387750:intergenic | 60.0% |
| CGTTGCAATCGAGAACCCCC+AGG | + | tig0020938:980-999 | Msa1387750:CDS | 60.0% | |
| CGAAGAGGCCAAGGAGCAAG+AGG | + | tig0020938:1692-1711 | Msa1387750:CDS | 60.0% | |
| AGAGGCCAAGGAGCAAGAGG+AGG | + | tig0020938:1695-1714 | Msa1387750:CDS | 60.0% | |
| GGAGCTGCTGGAATAGGCTG+TGG | - | tig0020938:1825-1844 | Msa1387750:intergenic | 60.0% | |
| CAGCCTATTCCAGCAGCTCC+TGG | + | tig0020938:1825-1844 | Msa1387750:CDS | 60.0% | |
| CAGTTGACACCAGGAGCTGC+TGG | - | tig0020938:1837-1856 | Msa1387750:intergenic | 60.0% | |
| ! | CAGCAGCTCCTGGTGTCAAC+TGG | + | tig0020938:1835-1854 | Msa1387750:CDS | 60.0% |
| TGCTGTCTACTGCCGGCGAC+GGG | - | tig0020938:45-64 | Msa1387750:intergenic | 65.0% | |
| AACTGGGCTGCCCCAGAAGC+TGG | + | tig0020938:1852-1871 | Msa1387750:CDS | 65.0% | |
| CGGAGATTCGCTCCCGTCGC+CGG | + | tig0020938:30-49 | Msa1387750:CDS | 70.0% | |
| GGGGCAGCCCAGTTGACACC+AGG | - | tig0020938:1846-1865 | Msa1387750:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020938 | gene | 3 | 2601 | 3 | ID=Msa1387750;Name=Msa1387750 |
| tig0020938 | mRNA | 3 | 2601 | 3 | ID=Msa1387750-mRNA-1;Parent=Msa1387750;Name=Msa1387750-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.8|1|1|1|5|343|322 |
| tig0020938 | exon | 3 | 213 | 3 | ID=Msa1387750-mRNA-1:exon:10805;Parent=Msa1387750-mRNA-1 |
| tig0020938 | exon | 919 | 1181 | 919 | ID=Msa1387750-mRNA-1:exon:10806;Parent=Msa1387750-mRNA-1 |
| tig0020938 | exon | 1336 | 1533 | 1336 | ID=Msa1387750-mRNA-1:exon:10807;Parent=Msa1387750-mRNA-1 |
| tig0020938 | exon | 1666 | 1873 | 1666 | ID=Msa1387750-mRNA-1:exon:10808;Parent=Msa1387750-mRNA-1 |
| tig0020938 | exon | 2170 | 2601 | 2170 | ID=Msa1387750-mRNA-1:exon:10809;Parent=Msa1387750-mRNA-1 |
| tig0020938 | CDS | 3 | 213 | 3 | ID=Msa1387750-mRNA-1:cds;Parent=Msa1387750-mRNA-1 |
| tig0020938 | CDS | 919 | 1181 | 919 | ID=Msa1387750-mRNA-1:cds;Parent=Msa1387750-mRNA-1 |
| tig0020938 | CDS | 1336 | 1533 | 1336 | ID=Msa1387750-mRNA-1:cds;Parent=Msa1387750-mRNA-1 |
| tig0020938 | CDS | 1666 | 1873 | 1666 | ID=Msa1387750-mRNA-1:cds;Parent=Msa1387750-mRNA-1 |
| tig0020938 | CDS | 2170 | 2258 | 2170 | ID=Msa1387750-mRNA-1:cds;Parent=Msa1387750-mRNA-1 |
| tig0020938 | three_prime_UTR | 2259 | 2601 | 2259 | ID=Msa1387750-mRNA-1:three_prime_utr;Parent=Msa1387750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
