Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752230 | sp|Q9LJN8|BUB31_ARATH | 84.706 | 340 | 52 | 0 | 1 | 340 | 1 | 340 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752230 | G7K0X2 | 98.521 | 338 | 5 | 0 | 3 | 340 | 7 | 344 | 0.0 | 700 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0625340 | Msa0752230 | 0.801646 | 8.162083e-49 | -8.615850e-47 |
| Msa0711010 | Msa0752230 | 0.897415 | 1.438128e-76 | -8.615850e-47 |
| Msa0752230 | Msa0827420 | 0.810064 | 1.388055e-50 | -8.615850e-47 |
| Msa0752230 | Msa0901150 | 0.813040 | 3.129705e-51 | -8.615850e-47 |
| Msa0752230 | Msa1212700 | 0.847903 | 8.613252e-60 | -8.615850e-47 |
| Msa0752230 | Msa1212920 | 0.852253 | 5.211216e-61 | -8.615850e-47 |
| Msa0752230 | Msa1331650 | 0.830733 | 2.487206e-55 | -8.615850e-47 |
| Msa0752230 | Msa1408160 | 0.804308 | 2.299073e-49 | -8.615850e-47 |
| Msa0752230 | Msa1443720 | 0.899662 | 1.587884e-77 | -8.615850e-47 |
| Msa0752230 | Msa1448960 | 0.807833 | 4.166178e-50 | -8.615850e-47 |
| Msa0172590 | Msa0752230 | 0.807590 | 4.693588e-50 | -8.615850e-47 |
| Msa0580940 | Msa0752230 | 0.803527 | 3.340620e-49 | -8.615850e-47 |
| Msa0580990 | Msa0752230 | 0.872010 | 4.414906e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752230 | MtrunA17_Chr5g0393711 | 98.521 | 338 | 5 | 0 | 3 | 340 | 7 | 344 | 0.0 | 700 |
| Msa0752230 | MtrunA17_Chr5g0418221 | 37.658 | 316 | 189 | 5 | 15 | 328 | 16 | 325 | 1.09e-67 | 215 |
| Msa0752230 | MtrunA17_Chr2g0278901 | 34.226 | 336 | 197 | 7 | 11 | 333 | 20 | 344 | 9.23e-64 | 206 |
| Msa0752230 | MtrunA17_Chr8g0367631 | 34.524 | 336 | 197 | 7 | 11 | 334 | 18 | 342 | 3.32e-63 | 204 |
| Msa0752230 | MtrunA17_Chr1g0198231 | 31.707 | 328 | 193 | 7 | 7 | 314 | 12 | 328 | 7.79e-48 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752230 | AT3G19590.1 | 84.706 | 340 | 52 | 0 | 1 | 340 | 1 | 340 | 0.0 | 615 |
| Msa0752230 | AT1G49910.1 | 85.119 | 336 | 50 | 0 | 3 | 338 | 2 | 337 | 0.0 | 608 |
| Msa0752230 | AT1G80670.1 | 35.821 | 335 | 192 | 8 | 11 | 333 | 19 | 342 | 1.95e-65 | 210 |
| Msa0752230 | AT1G69400.1 | 36.334 | 311 | 191 | 4 | 11 | 320 | 7 | 311 | 3.70e-64 | 206 |
| Msa0752230 | AT1G69400.2 | 37.037 | 243 | 147 | 3 | 11 | 253 | 7 | 243 | 3.04e-46 | 158 |
Find 116 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATATGCTTCTCGAAATT+TGG | 0.116715 | 5_2:+5849653 | Msa0752230:three_prime_UTR |
| TACCGGTAAGGAGGATATTT+TGG | 0.159397 | 5_2:+5846297 | Msa0752230:CDS |
| TTGGGAAGGGCTTTGGGTTT+TGG | 0.164675 | 5_2:-5849368 | None:intergenic |
| TGCAGGATTGGGAAGGGCTT+TGG | 0.197252 | 5_2:-5849375 | None:intergenic |
| TAACAGAGATACCTGTTCTT+AGG | 0.220195 | 5_2:+5849684 | Msa0752230:three_prime_UTR |
| ATACATGCTAGTTAACATTT+TGG | 0.252540 | 5_2:+5849536 | Msa0752230:three_prime_UTR |
| GTGGAATGCCATGGCATTTA+CGG | 0.284148 | 5_2:-5848046 | None:intergenic |
| CCTCTTGTAGTTGTAGTGTT+TGG | 0.285681 | 5_2:+5845877 | Msa0752230:five_prime_UTR |
| GTGTACTTTGTTCACATCTT+TGG | 0.299055 | 5_2:+5849462 | Msa0752230:three_prime_UTR |
| CTACCTATCTAATCTAATCT+AGG | 0.306261 | 5_2:-5845904 | None:intergenic |
| GCAGGATTGGGAAGGGCTTT+GGG | 0.318991 | 5_2:-5849374 | None:intergenic |
| TGCTTCCATGACGACTCTTC+TGG | 0.326043 | 5_2:+5846135 | Msa0752230:CDS |
| TACAGTTTACCTGTTCCATT+TGG | 0.330327 | 5_2:-5847518 | None:intergenic |
| GAAGATTCCCTTCGTTGTTC+AGG | 0.332221 | 5_2:-5847461 | None:intergenic |
| GTTTACTCTCTATCTCTTGT+TGG | 0.372907 | 5_2:+5847371 | Msa0752230:CDS |
| ATCATCTTCTCGTCTCCTCT+TGG | 0.379669 | 5_2:+5846031 | Msa0752230:CDS |
| TCCCAAAATATCCTCCTTAC+CGG | 0.391787 | 5_2:-5846299 | None:intergenic |
| GTTGTGAATACTTACGGTTT+AGG | 0.392170 | 5_2:-5849222 | None:intergenic |
| TGGAATGCCATGGCATTTAC+GGG | 0.398545 | 5_2:-5848045 | None:intergenic |
| GATAGAGAGTAAACACGTTC+AGG | 0.399955 | 5_2:-5847362 | None:intergenic |
| AGTGAATCACGCTGCAGGAT+TGG | 0.403543 | 5_2:-5849387 | None:intergenic |
| CGTGAAGGAACTCACCTCTA+AGG | 0.414200 | 5_2:-5846092 | None:intergenic |
| GTGAATCACGCTGCAGGATT+GGG | 0.415119 | 5_2:-5849386 | None:intergenic |
| GCAACTGCAGATGTCCTTAG+AGG | 0.424085 | 5_2:+5846078 | Msa0752230:CDS |
| TGGGTAGCAGCGTACACATC+TGG | 0.426524 | 5_2:-5847498 | None:intergenic |
| CGCTGCTACCCAAATGGAAC+AGG | 0.433713 | 5_2:+5847509 | Msa0752230:CDS |
| TCTTGTCCACTTGCACCTCT+AGG | 0.434348 | 5_2:-5847311 | None:intergenic |
| TGACCGTCTGACAGTGTTAT+CGG | 0.437288 | 5_2:-5846172 | None:intergenic |
| GGGATAAAACCATAAAATGT+TGG | 0.442375 | 5_2:+5847285 | Msa0752230:CDS |
| GCAATTGATCACTGGAAGTT+GGG | 0.444451 | 5_2:+5847265 | Msa0752230:CDS |
| TCATCTTCTCGTCTCCTCTT+GGG | 0.446872 | 5_2:+5846032 | Msa0752230:CDS |
| GGCAATTGATCACTGGAAGT+TGG | 0.450395 | 5_2:+5847264 | Msa0752230:CDS |
| GGATAAAACCATAAAATGTT+GGG | 0.457603 | 5_2:+5847286 | Msa0752230:CDS |
| TGACCTATCTGAGGCTAGCC+AGG | 0.461002 | 5_2:+5847854 | Msa0752230:CDS |
| ACGGAGTAGTCCCTAAGAAC+AGG | 0.467630 | 5_2:-5849695 | None:intergenic |
| CTCTATCTCTTGTTGGACAT+CGG | 0.475750 | 5_2:+5847378 | Msa0752230:CDS |
| ACAACAAATATTTACAATGA+AGG | 0.476560 | 5_2:-5849586 | None:intergenic |
| AACAGAGATACCTGTTCTTA+GGG | 0.477008 | 5_2:+5849685 | Msa0752230:three_prime_UTR |
| AAAATCAATACTTCTTTGCC+TGG | 0.480508 | 5_2:-5847872 | None:intergenic |
| GGACAAGAGCGTACTCTAGT+TGG | 0.480881 | 5_2:+5847326 | Msa0752230:CDS |
| ACAGTTTACCTGTTCCATTT+GGG | 0.482139 | 5_2:-5847517 | None:intergenic |
| TGTGTACGCTGCTACCCAAA+TGG | 0.483373 | 5_2:+5847503 | Msa0752230:CDS |
| TCACAACATTAGTCTACCTT+GGG | 0.483597 | 5_2:-5849494 | None:intergenic |
| CCAAACACTACAACTACAAG+AGG | 0.486897 | 5_2:-5845877 | None:intergenic |
| CTTAGAGGTGAGTTCCTTCA+CGG | 0.487170 | 5_2:+5846093 | Msa0752230:CDS |
| GAGAGTGCAGCAATGCTACT+TGG | 0.487185 | 5_2:-5849141 | None:intergenic |
| AATCCTGCAGCGTGATTCAC+TGG | 0.488528 | 5_2:+5849389 | Msa0752230:exon |
| TTCACAACATTAGTCTACCT+TGG | 0.489834 | 5_2:-5849495 | None:intergenic |
| TTGCCTGGCTAGCCTCAGAT+AGG | 0.496802 | 5_2:-5847857 | None:intergenic |
| ATGTTCGAGATTCCGTCTGA+TGG | 0.502489 | 5_2:-5845988 | None:intergenic |
| GACAAGAGCGTACTCTAGTT+GGG | 0.502955 | 5_2:+5847327 | Msa0752230:CDS |
| TGGAAGCAACAATCAAGAAC+AGG | 0.503586 | 5_2:-5846120 | None:intergenic |
| CTTGTCCACTTGCACCTCTA+GGG | 0.505930 | 5_2:-5847310 | None:intergenic |
| CAAGAACAGGTCCGCCGTGA+AGG | 0.511608 | 5_2:-5846107 | None:intergenic |
| TCTCGACCGGCGGATACCAC+TGG | 0.514276 | 5_2:-5845952 | None:intergenic |
| TGTTGAAGGGCGGGTTGCAA+TGG | 0.517015 | 5_2:+5847824 | Msa0752230:CDS |
| GAGTACTCAACACAACGAAC+AGG | 0.517820 | 5_2:-5846334 | None:intergenic |
| TATGCTCTTAGTTCTGTTGA+AGG | 0.518025 | 5_2:+5847810 | Msa0752230:CDS |
| GAACCAGTGAATCACGCTGC+AGG | 0.520926 | 5_2:-5849392 | None:intergenic |
| GCACTCTCGTTTAGCAGAGA+TGG | 0.522542 | 5_2:+5849156 | Msa0752230:CDS |
| TCTTAGTTCTGTTGAAGGGC+GGG | 0.525855 | 5_2:+5847815 | Msa0752230:CDS |
| CGTAGATAGCATCTTGGTCA+TGG | 0.526895 | 5_2:-5849316 | None:intergenic |
| TGTCATAGAAAATCTGAAGC+TGG | 0.530953 | 5_2:+5848006 | Msa0752230:CDS |
| TAGAAAATCTGAAGCTGGAA+GGG | 0.537950 | 5_2:+5848011 | Msa0752230:CDS |
| CTCTTAGTTCTGTTGAAGGG+CGG | 0.540304 | 5_2:+5847814 | Msa0752230:CDS |
| ATCAACACGCGACCCAAACA+CGG | 0.542705 | 5_2:-5845831 | None:intergenic |
| GTTGAGTACTCCTACGCCGC+AGG | 0.544652 | 5_2:+5846346 | Msa0752230:CDS |
| CTGAAAACACTTACATGGGG+TGG | 0.550167 | 5_2:-5848065 | None:intergenic |
| CGGCTTGTAGTAGCAACAGC+TGG | 0.551056 | 5_2:+5847398 | Msa0752230:CDS |
| ATAGAAAATCTGAAGCTGGA+AGG | 0.551824 | 5_2:+5848010 | Msa0752230:CDS |
| ATTATAGGGCAATTGATCAC+TGG | 0.555294 | 5_2:+5847257 | Msa0752230:intron |
| CAACAAATATTTACAATGAA+GGG | 0.557765 | 5_2:-5849585 | None:intergenic |
| AACCCTAGATTAGATTAGAT+AGG | 0.559459 | 5_2:+5845901 | Msa0752230:five_prime_UTR |
| TTCGAGATTCCGTCTGATGG+AGG | 0.561551 | 5_2:-5845985 | None:intergenic |
| TACCTATCTAATCTAATCTA+GGG | 0.563320 | 5_2:-5845903 | None:intergenic |
| TTGCTGTGTTGTAAAGACCC+AGG | 0.563747 | 5_2:+5849608 | Msa0752230:three_prime_UTR |
| AAGTAAGTAACCTGCGGCGT+AGG | 0.564929 | 5_2:-5846356 | None:intergenic |
| TCGAGATTCCGTCTGATGGA+GGG | 0.571433 | 5_2:-5845984 | None:intergenic |
| TGCGAACGTAGATAGCATCT+TGG | 0.573621 | 5_2:-5849322 | None:intergenic |
| AGGGTTTGTTAACTCTCGAC+CGG | 0.575778 | 5_2:-5845965 | None:intergenic |
| ATGCTCTTAGTTCTGTTGAA+GGG | 0.579584 | 5_2:+5847811 | Msa0752230:CDS |
| TCAACACGCGACCCAAACAC+GGG | 0.581635 | 5_2:-5845830 | None:intergenic |
| ATCACGCTGCAGGATTGGGA+AGG | 0.587120 | 5_2:-5849382 | None:intergenic |
| CGTCTATCCCGTAAATGCCA+TGG | 0.598810 | 5_2:+5848038 | Msa0752230:CDS |
| TGTAACTTGATGCAACAGCT+AGG | 0.599050 | 5_2:-5849185 | None:intergenic |
| ACAGGTATCTCTGTTAGAGA+TGG | 0.601076 | 5_2:-5849677 | None:intergenic |
| GTCTTGTCCTGAACAACGAA+GGG | 0.604426 | 5_2:+5847454 | Msa0752230:CDS |
| ACGTTAATGTTTATGACATG+AGG | 0.606508 | 5_2:+5847426 | Msa0752230:CDS |
| TGAAACCAGAAGAGTCGTCA+TGG | 0.608860 | 5_2:-5846140 | None:intergenic |
| GGAATTCTTTGACCTATCTG+AGG | 0.609008 | 5_2:+5847845 | Msa0752230:CDS |
| TGCTGTGTTGTAAAGACCCA+GGG | 0.609828 | 5_2:+5849609 | Msa0752230:three_prime_UTR |
| TCACGCTGCAGGATTGGGAA+GGG | 0.611093 | 5_2:-5849381 | None:intergenic |
| TCTGACAGTGTTATCGGCGG+AGG | 0.614498 | 5_2:-5846166 | None:intergenic |
| AGATATGGTACATTTGCCAC+AGG | 0.618381 | 5_2:+5848960 | Msa0752230:intron |
| TTACATGGGGTGGAATGCCA+TGG | 0.620444 | 5_2:-5848055 | None:intergenic |
| TTTGCCACAGGAGGTTGTGA+CGG | 0.624438 | 5_2:+5848972 | Msa0752230:CDS |
| ATAGTAGCAGTAGTCACCCT+GGG | 0.626060 | 5_2:-5849625 | None:intergenic |
| TGTCTTGTCCTGAACAACGA+AGG | 0.627385 | 5_2:+5847453 | Msa0752230:CDS |
| TATGGTACATTTGCCACAGG+AGG | 0.632539 | 5_2:+5848963 | Msa0752230:CDS |
| GCAACACCAGTGGTATCCGC+CGG | 0.635006 | 5_2:+5845946 | Msa0752230:CDS |
| AATAGTAGCAGTAGTCACCC+TGG | 0.638455 | 5_2:-5849626 | None:intergenic |
| TGGGACCCTAGAGGTGCAAG+TGG | 0.639134 | 5_2:+5847305 | Msa0752230:CDS |
| TTAACAAACCCTCCATCAGA+CGG | 0.649038 | 5_2:+5845976 | Msa0752230:CDS |
| AAAACCGTCACAACCTCCTG+TGG | 0.649987 | 5_2:-5848976 | None:intergenic |
| GTTTGTTAACTCTCGACCGG+CGG | 0.651310 | 5_2:-5845962 | None:intergenic |
| CTCAACAATGGCAACACCAG+TGG | 0.659385 | 5_2:+5845936 | Msa0752230:exon |
| TCTTTGGTATGAACATCCCA+AGG | 0.659765 | 5_2:+5849478 | Msa0752230:three_prime_UTR |
| TAGTGAGTTCAACTCAACAA+TGG | 0.664816 | 5_2:+5845924 | Msa0752230:exon |
| CAAACACTACAACTACAAGA+GGG | 0.673126 | 5_2:-5845876 | None:intergenic |
| CAACACGCGACCCAAACACG+GGG | 0.675120 | 5_2:-5845829 | None:intergenic |
| AACTTGATGCAACAGCTAGG+AGG | 0.684112 | 5_2:-5849182 | None:intergenic |
| CCGCCGATAACACTGTCAGA+CGG | 0.721323 | 5_2:+5846169 | Msa0752230:CDS |
| CCGTCTGACAGTGTTATCGG+CGG | 0.723525 | 5_2:-5846169 | None:intergenic |
| AGAGGTGAGTTCCTTCACGG+CGG | 0.725492 | 5_2:+5846096 | Msa0752230:CDS |
| ATAAAATGTTGGGACCCTAG+AGG | 0.729323 | 5_2:+5847296 | Msa0752230:CDS |
| AGACGAGAAGATGATCACTG+TGG | 0.796510 | 5_2:-5846023 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTAAAAAAAACTTG+GGG | + | chr5_2:5846674-5846693 | Msa0752230:intron | 10.0% |
| !!! | TTAAAATTTAAAACAAATTG+TGG | + | chr5_2:5848143-5848162 | Msa0752230:intron | 10.0% |
| !!! | TTTGTTTTTGTTTTTGTTTT+AGG | - | chr5_2:5845807-5845826 | None:intergenic | 15.0% |
| !! | TCTAAATTAACACATATAAT+TGG | - | chr5_2:5846417-5846436 | None:intergenic | 15.0% |
| !! | TTTGTAAGGAATAATAATTA+AGG | + | chr5_2:5846966-5846985 | Msa0752230:intron | 15.0% |
| !!! | TATTTGGTTTAGAAATTAAA+TGG | + | chr5_2:5848334-5848353 | Msa0752230:intron | 15.0% |
| !! | TAAGGAATCTTATTAATAAA+AGG | + | chr5_2:5848729-5848748 | Msa0752230:intron | 15.0% |
| !! | CTAATAAATTAGTGATAATT+GGG | - | chr5_2:5848854-5848873 | None:intergenic | 15.0% |
| !! | ACTAATAAATTAGTGATAAT+TGG | - | chr5_2:5848855-5848874 | None:intergenic | 15.0% |
| !!! | TATTTTTCAAAATTACTATC+AGG | - | chr5_2:5849417-5849436 | None:intergenic | 15.0% |
| !! | ACTAACAATAACAATAACAA+TGG | - | chr5_2:5846234-5846253 | None:intergenic | 20.0% |
| !! | AATCAGAAAATATATACTAG+TGG | - | chr5_2:5846536-5846555 | None:intergenic | 20.0% |
| !! | AGTTACAAAGAAAATTCAAA+TGG | + | chr5_2:5846839-5846858 | Msa0752230:intron | 20.0% |
| !! | GTTACAAAGAAAATTCAAAT+GGG | + | chr5_2:5846840-5846859 | Msa0752230:intron | 20.0% |
| !! | ATATTATTATTTCCGTTCAA+AGG | + | chr5_2:5847135-5847154 | Msa0752230:intron | 20.0% |
| !!! | TTTAACTTATCCATCATTAT+AGG | + | chr5_2:5847242-5847261 | Msa0752230:intron | 20.0% |
| !! | TTAACTTATCCATCATTATA+GGG | + | chr5_2:5847243-5847262 | Msa0752230:intron | 20.0% |
| !!! | AAAAAACAACAATTTTGAAG+TGG | - | chr5_2:5847921-5847940 | None:intergenic | 20.0% |
| !! | TTATCAATAACATGTATGAA+AGG | - | chr5_2:5848307-5848326 | None:intergenic | 20.0% |
| !!! | TATTGATAATCATGACTATT+TGG | + | chr5_2:5848318-5848337 | Msa0752230:intron | 20.0% |
| !! | AATAAGATTCCTTATATTCA+AGG | - | chr5_2:5848723-5848742 | None:intergenic | 20.0% |
| !! | CAACAAATATTTACAATGAA+GGG | - | chr5_2:5849588-5849607 | None:intergenic | 20.0% |
| !! | ACAACAAATATTTACAATGA+AGG | - | chr5_2:5849589-5849608 | None:intergenic | 20.0% |
| ! | TACCTATCTAATCTAATCTA+GGG | - | chr5_2:5845906-5845925 | None:intergenic | 25.0% |
| ! | AATAACAATAACAATGGATC+TGG | - | chr5_2:5846228-5846247 | None:intergenic | 25.0% |
| ! | AATAATAAGTAAGTAACCTG+CGG | - | chr5_2:5846365-5846384 | None:intergenic | 25.0% |
| ! | TTAGCAGTTTGAAAGAAAAA+AGG | - | chr5_2:5846394-5846413 | None:intergenic | 25.0% |
| !! | TGAGTTTTCAGTGTTAAAAA+GGG | - | chr5_2:5846613-5846632 | None:intergenic | 25.0% |
| !! | TTGAGTTTTCAGTGTTAAAA+AGG | - | chr5_2:5846614-5846633 | None:intergenic | 25.0% |
| ! | TTTAAAAAAAACTTGGGGAA+AGG | + | chr5_2:5846679-5846698 | Msa0752230:intron | 25.0% |
| ! | TTAAAAAAAACTTGGGGAAA+GGG | + | chr5_2:5846680-5846699 | Msa0752230:intron | 25.0% |
| ! | GGATAAAACCATAAAATGTT+GGG | + | chr5_2:5847286-5847305 | Msa0752230:CDS | 25.0% |
| !! | GGAATAATTTGCAAAACTTA+TGG | + | chr5_2:5847557-5847576 | Msa0752230:intron | 25.0% |
| ! | AATTTGCAAAACTTATGGTT+TGG | + | chr5_2:5847562-5847581 | Msa0752230:intron | 25.0% |
| !! | TTGAAATTTTCATCAAATGC+TGG | + | chr5_2:5847611-5847630 | Msa0752230:intron | 25.0% |
| !!! | AAAACAAATTGTGGTTTTAG+TGG | + | chr5_2:5848152-5848171 | Msa0752230:intron | 25.0% |
| ! | AAATTAAATGGTTGCAAGTT+GGG | + | chr5_2:5848346-5848365 | Msa0752230:intron | 25.0% |
| ! | TAATTCTAACCATCCAATTT+CGG | - | chr5_2:5848603-5848622 | None:intergenic | 25.0% |
| ! | TAGAAAGAACAATGTATTCA+AGG | - | chr5_2:5848764-5848783 | None:intergenic | 25.0% |
| ! | AATTAACAACAGATTAGAGA+GGG | - | chr5_2:5849286-5849305 | None:intergenic | 25.0% |
| ! | AAATTAACAACAGATTAGAG+AGG | - | chr5_2:5849287-5849306 | None:intergenic | 25.0% |
| !! | ATACATGCTAGTTAACATTT+TGG | + | chr5_2:5849536-5849555 | Msa0752230:three_prime_UTR | 25.0% |
| AACCCTAGATTAGATTAGAT+AGG | + | chr5_2:5845901-5845920 | Msa0752230:five_prime_UTR | 30.0% | |
| CTACCTATCTAATCTAATCT+AGG | - | chr5_2:5845907-5845926 | None:intergenic | 30.0% | |
| !! | TTGACTTGTAAGTAACTTCA+AGG | - | chr5_2:5846777-5846796 | None:intergenic | 30.0% |
| ! | AAAATCAGTTTTCGCTAATC+TGG | - | chr5_2:5846810-5846829 | None:intergenic | 30.0% |
| !!! | GGTTTTAAACTTGATTCTCA+AGG | - | chr5_2:5847049-5847068 | None:intergenic | 30.0% |
| ACCAACGATGATAACATATT+TGG | + | chr5_2:5847066-5847085 | Msa0752230:intron | 30.0% | |
| ACCAAATATGTTATCATCGT+TGG | - | chr5_2:5847070-5847089 | None:intergenic | 30.0% | |
| GAAGTTTGACTATTGACAAT+GGG | + | chr5_2:5847213-5847232 | Msa0752230:intron | 30.0% | |
| GGGATAAAACCATAAAATGT+TGG | + | chr5_2:5847285-5847304 | Msa0752230:CDS | 30.0% | |
| ACGTTAATGTTTATGACATG+AGG | + | chr5_2:5847426-5847445 | Msa0752230:CDS | 30.0% | |
| ! | GCACTATTATTGATTGAAAG+AGG | + | chr5_2:5847680-5847699 | Msa0752230:intron | 30.0% |
| ! | ATATCCTGCAAAAAGTATGT+GGG | - | chr5_2:5847793-5847812 | None:intergenic | 30.0% |
| AAAATCAATACTTCTTTGCC+TGG | - | chr5_2:5847875-5847894 | None:intergenic | 30.0% | |
| TTTAGCATGCTAGTGAATTA+AGG | - | chr5_2:5848118-5848137 | None:intergenic | 30.0% | |
| TATCAGCTATTTATGTTCTC+TGG | + | chr5_2:5848191-5848210 | Msa0752230:intron | 30.0% | |
| ATCAGCTATTTATGTTCTCT+GGG | + | chr5_2:5848192-5848211 | Msa0752230:intron | 30.0% | |
| AATTATCAGTGTCCATTCTT+TGG | - | chr5_2:5848219-5848238 | None:intergenic | 30.0% | |
| GAAATTAAATGGTTGCAAGT+TGG | + | chr5_2:5848345-5848364 | Msa0752230:intron | 30.0% | |
| !! | GTCATTTTCTAGTCGATTTT+TGG | - | chr5_2:5848434-5848453 | None:intergenic | 30.0% |
| AAATCGACTAGAAAATGACT+AGG | + | chr5_2:5848435-5848454 | Msa0752230:intron | 30.0% | |
| GAATGATACAAATCCTAGAA+TGG | - | chr5_2:5848538-5848557 | None:intergenic | 30.0% | |
| TATTACATTGTTGTACGAGT+GGG | - | chr5_2:5848642-5848661 | None:intergenic | 30.0% | |
| TCGTACAACAATGTAATAGT+TGG | + | chr5_2:5848644-5848663 | Msa0752230:intron | 30.0% | |
| TGCTAAACACCTTGAATATA+AGG | + | chr5_2:5848711-5848730 | Msa0752230:intron | 30.0% | |
| ! | AGTTAGTTGTGATTGATAGT+TGG | - | chr5_2:5848819-5848838 | None:intergenic | 30.0% |
| GAAAAATCTTCATGCAGATA+TGG | + | chr5_2:5848945-5848964 | Msa0752230:intron | 30.0% | |
| TAGAGATCAGATTCTTCTTA+TGG | + | chr5_2:5849068-5849087 | Msa0752230:intron | 30.0% | |
| TTGAATACTGCAAGGATAAA+TGG | - | chr5_2:5849116-5849135 | None:intergenic | 30.0% | |
| !! | ATCAAGTTACACTTTTGAAG+AGG | + | chr5_2:5849197-5849216 | Msa0752230:CDS | 30.0% |
| !! | TCAAGTTACACTTTTGAAGA+GGG | + | chr5_2:5849198-5849217 | Msa0752230:CDS | 30.0% |
| TTGATATGCTTCTCGAAATT+TGG | + | chr5_2:5849653-5849672 | Msa0752230:three_prime_UTR | 30.0% | |
| AAAAACAAAAACCCCGTGTT+TGG | + | chr5_2:5845818-5845837 | Msa0752230:five_prime_UTR | 35.0% | |
| AAAACAAAAACCCCGTGTTT+GGG | + | chr5_2:5845819-5845838 | Msa0752230:five_prime_UTR | 35.0% | |
| CAAACACTACAACTACAAGA+GGG | - | chr5_2:5845879-5845898 | None:intergenic | 35.0% | |
| TAGTGAGTTCAACTCAACAA+TGG | + | chr5_2:5845924-5845943 | Msa0752230:exon | 35.0% | |
| CAATAACAATGGATCTGGAA+AGG | - | chr5_2:5846223-5846242 | None:intergenic | 35.0% | |
| AGCTAGAAACTGCAATGAAT+AGG | - | chr5_2:5846587-5846606 | None:intergenic | 35.0% | |
| AATAGAGTTCAAATCTCCAC+GGG | - | chr5_2:5846754-5846773 | None:intergenic | 35.0% | |
| GAATAGAGTTCAAATCTCCA+CGG | - | chr5_2:5846755-5846774 | None:intergenic | 35.0% | |
| CTTACAAAGAATATCACACG+AGG | - | chr5_2:5846954-5846973 | None:intergenic | 35.0% | |
| CTCGTGTGATATTCTTTGTA+AGG | + | chr5_2:5846952-5846971 | Msa0752230:intron | 35.0% | |
| ! | TGATTCTCAAGGCACATTTT+AGG | - | chr5_2:5847038-5847057 | None:intergenic | 35.0% |
| AGAATGATGACTCCTTTGAA+CGG | - | chr5_2:5847150-5847169 | None:intergenic | 35.0% | |
| TGCAATTCTTGTCATTGTCA+TGG | - | chr5_2:5847181-5847200 | None:intergenic | 35.0% | |
| AAGAATTGCAGCTTATTTGC+TGG | + | chr5_2:5847191-5847210 | Msa0752230:intron | 35.0% | |
| GGAAGTTTGACTATTGACAA+TGG | + | chr5_2:5847212-5847231 | Msa0752230:intron | 35.0% | |
| GATCAATTGCCCTATAATGA+TGG | - | chr5_2:5847255-5847274 | None:intergenic | 35.0% | |
| ATTATAGGGCAATTGATCAC+TGG | + | chr5_2:5847257-5847276 | Msa0752230:intron | 35.0% | |
| GTTTACTCTCTATCTCTTGT+TGG | + | chr5_2:5847371-5847390 | Msa0752230:CDS | 35.0% | |
| ACAGTTTACCTGTTCCATTT+GGG | - | chr5_2:5847520-5847539 | None:intergenic | 35.0% | |
| TACAGTTTACCTGTTCCATT+TGG | - | chr5_2:5847521-5847540 | None:intergenic | 35.0% | |
| ! | CTGTAGTGTATGTGTGATTT+TGG | + | chr5_2:5847536-5847555 | Msa0752230:intron | 35.0% |
| !! | GTTGAGTTTCTTAGCTTTGA+TGG | + | chr5_2:5847725-5847744 | Msa0752230:intron | 35.0% |
| TATGTGGGATATGAACATCA+AGG | - | chr5_2:5847778-5847797 | None:intergenic | 35.0% | |
| !! | ATATCCCACATACTTTTTGC+AGG | + | chr5_2:5847786-5847805 | Msa0752230:intron | 35.0% |
| ! | CATATCCTGCAAAAAGTATG+TGG | - | chr5_2:5847794-5847813 | None:intergenic | 35.0% |
| !! | TATGCTCTTAGTTCTGTTGA+AGG | + | chr5_2:5847810-5847829 | Msa0752230:CDS | 35.0% |
| !! | ATGCTCTTAGTTCTGTTGAA+GGG | + | chr5_2:5847811-5847830 | Msa0752230:CDS | 35.0% |
| GTAGAGTTTAGAAGCAAATG+AGG | - | chr5_2:5847969-5847988 | None:intergenic | 35.0% | |
| TTTGCTTCTAAACTCTACAC+AGG | + | chr5_2:5847971-5847990 | Msa0752230:intron | 35.0% | |
| ! | TGTCATAGAAAATCTGAAGC+TGG | + | chr5_2:5848006-5848025 | Msa0752230:CDS | 35.0% |
| ! | ATAGAAAATCTGAAGCTGGA+AGG | + | chr5_2:5848010-5848029 | Msa0752230:CDS | 35.0% |
| ! | TAGAAAATCTGAAGCTGGAA+GGG | + | chr5_2:5848011-5848030 | Msa0752230:CDS | 35.0% |
| AACCTGAAAACACTTACATG+GGG | - | chr5_2:5848071-5848090 | None:intergenic | 35.0% | |
| GAACCTGAAAACACTTACAT+GGG | - | chr5_2:5848072-5848091 | None:intergenic | 35.0% | |
| AGAACCTGAAAACACTTACA+TGG | - | chr5_2:5848073-5848092 | None:intergenic | 35.0% | |
| ATTCACTAGCATGCTAAAGA+AGG | + | chr5_2:5848120-5848139 | Msa0752230:intron | 35.0% | |
| GACACTGATAATTACCACAA+TGG | + | chr5_2:5848226-5848245 | Msa0752230:intron | 35.0% | |
| CATCCTAACTGAATGTTGAT+AGG | + | chr5_2:5848381-5848400 | Msa0752230:intron | 35.0% | |
| GATCCTATCAACATTCAGTT+AGG | - | chr5_2:5848387-5848406 | None:intergenic | 35.0% | |
| GGAGATATTACGAATGTCAT+TGG | + | chr5_2:5848456-5848475 | Msa0752230:intron | 35.0% | |
| !! | AATCCTAGAATGGTACTGAT+AGG | - | chr5_2:5848528-5848547 | None:intergenic | 35.0% |
| TAATATCCCCATGTCATCTT+TGG | - | chr5_2:5848567-5848586 | None:intergenic | 35.0% | |
| CATGGGGATATTACACTTAA+TGG | + | chr5_2:5848574-5848593 | Msa0752230:intron | 35.0% | |
| CACTTAATGGTTTCCGAAAT+TGG | + | chr5_2:5848587-5848606 | Msa0752230:intron | 35.0% | |
| TAATGGTTTCCGAAATTGGA+TGG | + | chr5_2:5848591-5848610 | Msa0752230:intron | 35.0% | |
| CTATTACATTGTTGTACGAG+TGG | - | chr5_2:5848643-5848662 | None:intergenic | 35.0% | |
| TGGTGTAATAAGAACCAATC+TGG | + | chr5_2:5848664-5848683 | Msa0752230:intron | 35.0% | |
| GGTGTAATAAGAACCAATCT+GGG | + | chr5_2:5848665-5848684 | Msa0752230:intron | 35.0% | |
| GTGTAATAAGAACCAATCTG+GGG | + | chr5_2:5848666-5848685 | Msa0752230:intron | 35.0% | |
| TGTAATAAGAACCAATCTGG+GGG | + | chr5_2:5848667-5848686 | Msa0752230:intron | 35.0% | |
| AGCAGTATCAACATACTAAC+TGG | + | chr5_2:5848875-5848894 | Msa0752230:intron | 35.0% | |
| !!! | TGACGGTTTTGTTAACGTAT+GGG | + | chr5_2:5848989-5849008 | Msa0752230:CDS | 35.0% |
| CTGATCTCTAAATTTACTCG+AGG | - | chr5_2:5849058-5849077 | None:intergenic | 35.0% | |
| TGGATACTTTGAATACTGCA+AGG | - | chr5_2:5849124-5849143 | None:intergenic | 35.0% | |
| GTTGTGAATACTTACGGTTT+AGG | - | chr5_2:5849225-5849244 | None:intergenic | 35.0% | |
| ATGGGAGTTGTGAATACTTA+CGG | - | chr5_2:5849231-5849250 | None:intergenic | 35.0% | |
| GTGTACTTTGTTCACATCTT+TGG | + | chr5_2:5849462-5849481 | Msa0752230:three_prime_UTR | 35.0% | |
| ! | TCACAACATTAGTCTACCTT+GGG | - | chr5_2:5849497-5849516 | None:intergenic | 35.0% |
| ! | TTCACAACATTAGTCTACCT+TGG | - | chr5_2:5849498-5849517 | None:intergenic | 35.0% |
| TAACAGAGATACCTGTTCTT+AGG | + | chr5_2:5849684-5849703 | Msa0752230:three_prime_UTR | 35.0% | |
| AACAGAGATACCTGTTCTTA+GGG | + | chr5_2:5849685-5849704 | Msa0752230:three_prime_UTR | 35.0% | |
| CCAAACACTACAACTACAAG+AGG | - | chr5_2:5845880-5845899 | None:intergenic | 40.0% | |
| CCTCTTGTAGTTGTAGTGTT+TGG | + | chr5_2:5845877-5845896 | Msa0752230:five_prime_UTR | 40.0% | |
| TTAACAAACCCTCCATCAGA+CGG | + | chr5_2:5845976-5845995 | Msa0752230:CDS | 40.0% | |
| TGGAAGCAACAATCAAGAAC+AGG | - | chr5_2:5846123-5846142 | None:intergenic | 40.0% | |
| !! | TGTAGCCTCATTTTTGCTAC+CGG | + | chr5_2:5846280-5846299 | Msa0752230:intron | 40.0% |
| ! | TACCGGTAAGGAGGATATTT+TGG | + | chr5_2:5846297-5846316 | Msa0752230:CDS | 40.0% |
| ! | ACCGGTAAGGAGGATATTTT+GGG | + | chr5_2:5846298-5846317 | Msa0752230:CDS | 40.0% |
| TCCCAAAATATCCTCCTTAC+CGG | - | chr5_2:5846302-5846321 | None:intergenic | 40.0% | |
| TCATTTAACAACTGTTCCCG+TGG | + | chr5_2:5846735-5846754 | Msa0752230:intron | 40.0% | |
| ! | ATCAGTTTTCGCTAATCTGG+TGG | - | chr5_2:5846807-5846826 | None:intergenic | 40.0% |
| GCAATTGATCACTGGAAGTT+GGG | + | chr5_2:5847265-5847284 | Msa0752230:CDS | 40.0% | |
| !! | TCTAGGGTCCCAACATTTTA+TGG | - | chr5_2:5847297-5847316 | None:intergenic | 40.0% |
| ATAAAATGTTGGGACCCTAG+AGG | + | chr5_2:5847296-5847315 | Msa0752230:CDS | 40.0% | |
| GATAGAGAGTAAACACGTTC+AGG | - | chr5_2:5847365-5847384 | None:intergenic | 40.0% | |
| CTCTATCTCTTGTTGGACAT+CGG | + | chr5_2:5847378-5847397 | Msa0752230:CDS | 40.0% | |
| GGAATTCTTTGACCTATCTG+AGG | + | chr5_2:5847845-5847864 | Msa0752230:CDS | 40.0% | |
| GTCAGGAAACGATAATCTCT+TGG | + | chr5_2:5848254-5848273 | Msa0752230:intron | 40.0% | |
| ! | AAATGGTTGCAAGTTGGGAA+AGG | + | chr5_2:5848351-5848370 | Msa0752230:intron | 40.0% |
| TCTCCTATCAGTACCATTCT+AGG | + | chr5_2:5848522-5848541 | Msa0752230:intron | 40.0% | |
| TCAGAACACCAAAGATGACA+TGG | + | chr5_2:5848556-5848575 | Msa0752230:intron | 40.0% | |
| CAGAACACCAAAGATGACAT+GGG | + | chr5_2:5848557-5848576 | Msa0752230:intron | 40.0% | |
| AGAACACCAAAGATGACATG+GGG | + | chr5_2:5848558-5848577 | Msa0752230:intron | 40.0% | |
| !! | AGTGATAATTGGGTTAGCAG+CGG | - | chr5_2:5848844-5848863 | None:intergenic | 40.0% |
| AGATATGGTACATTTGCCAC+AGG | + | chr5_2:5848960-5848979 | Msa0752230:intron | 40.0% | |
| !!! | GTGACGGTTTTGTTAACGTA+TGG | + | chr5_2:5848988-5849007 | Msa0752230:CDS | 40.0% |
| !!! | GGTTTTGTTAACGTATGGGA+CGG | + | chr5_2:5848993-5849012 | Msa0752230:CDS | 40.0% |
| CAACAAAAAGAGGCTATACC+AGG | + | chr5_2:5849019-5849038 | Msa0752230:CDS | 40.0% | |
| TGTAACTTGATGCAACAGCT+AGG | - | chr5_2:5849188-5849207 | None:intergenic | 40.0% | |
| AACAACAGATTAGAGAGGGA+GGG | - | chr5_2:5849282-5849301 | None:intergenic | 40.0% | |
| TAACAACAGATTAGAGAGGG+AGG | - | chr5_2:5849283-5849302 | None:intergenic | 40.0% | |
| TCTTTGGTATGAACATCCCA+AGG | + | chr5_2:5849478-5849497 | Msa0752230:three_prime_UTR | 40.0% | |
| ACAGGTATCTCTGTTAGAGA+TGG | - | chr5_2:5849680-5849699 | None:intergenic | 40.0% | |
| !! | AGGGTTTGTTAACTCTCGAC+CGG | - | chr5_2:5845968-5845987 | None:intergenic | 45.0% |
| ATGTTCGAGATTCCGTCTGA+TGG | - | chr5_2:5845991-5846010 | None:intergenic | 45.0% | |
| AGACGAGAAGATGATCACTG+TGG | - | chr5_2:5846026-5846045 | None:intergenic | 45.0% | |
| ATCATCTTCTCGTCTCCTCT+TGG | + | chr5_2:5846031-5846050 | Msa0752230:CDS | 45.0% | |
| TCATCTTCTCGTCTCCTCTT+GGG | + | chr5_2:5846032-5846051 | Msa0752230:CDS | 45.0% | |
| !! | ACGAACAGTTTTGTCCCAAG+AGG | - | chr5_2:5846049-5846068 | None:intergenic | 45.0% |
| CTTAGAGGTGAGTTCCTTCA+CGG | + | chr5_2:5846093-5846112 | Msa0752230:CDS | 45.0% | |
| TGAAACCAGAAGAGTCGTCA+TGG | - | chr5_2:5846143-5846162 | None:intergenic | 45.0% | |
| TGACCGTCTGACAGTGTTAT+CGG | - | chr5_2:5846175-5846194 | None:intergenic | 45.0% | |
| CCTTACCGGTAGCAAAAATG+AGG | - | chr5_2:5846288-5846307 | None:intergenic | 45.0% | |
| !! | CCTCATTTTTGCTACCGGTA+AGG | + | chr5_2:5846285-5846304 | Msa0752230:CDS | 45.0% |
| ! | CATTTTTGCTACCGGTAAGG+AGG | + | chr5_2:5846288-5846307 | Msa0752230:CDS | 45.0% |
| GAGTACTCAACACAACGAAC+AGG | - | chr5_2:5846337-5846356 | None:intergenic | 45.0% | |
| TAGTGTCACACACTCTGTCT+TGG | + | chr5_2:5846452-5846471 | Msa0752230:intron | 45.0% | |
| CACGCATGTGCAAACAAGTA+TGG | - | chr5_2:5846488-5846507 | None:intergenic | 45.0% | |
| GGCAATTGATCACTGGAAGT+TGG | + | chr5_2:5847264-5847283 | Msa0752230:CDS | 45.0% | |
| ! | GACAAGAGCGTACTCTAGTT+GGG | + | chr5_2:5847327-5847346 | Msa0752230:CDS | 45.0% |
| TGTCTTGTCCTGAACAACGA+AGG | + | chr5_2:5847453-5847472 | Msa0752230:CDS | 45.0% | |
| GTCTTGTCCTGAACAACGAA+GGG | + | chr5_2:5847454-5847473 | Msa0752230:CDS | 45.0% | |
| GAAGATTCCCTTCGTTGTTC+AGG | - | chr5_2:5847464-5847483 | None:intergenic | 45.0% | |
| !! | CTCTTAGTTCTGTTGAAGGG+CGG | + | chr5_2:5847814-5847833 | Msa0752230:CDS | 45.0% |
| !! | TCTTAGTTCTGTTGAAGGGC+GGG | + | chr5_2:5847815-5847834 | Msa0752230:CDS | 45.0% |
| TGGAATGCCATGGCATTTAC+GGG | - | chr5_2:5848048-5848067 | None:intergenic | 45.0% | |
| GTGGAATGCCATGGCATTTA+CGG | - | chr5_2:5848049-5848068 | None:intergenic | 45.0% | |
| CTGAAAACACTTACATGGGG+TGG | - | chr5_2:5848068-5848087 | None:intergenic | 45.0% | |
| ! | CACCCCATGTAAGTGTTTTC+AGG | + | chr5_2:5848066-5848085 | Msa0752230:intron | 45.0% |
| TGTTCTCTGGGTCCAAAGAA+TGG | + | chr5_2:5848204-5848223 | Msa0752230:intron | 45.0% | |
| TTACCACAATGGCTTGAGTC+AGG | + | chr5_2:5848237-5848256 | Msa0752230:intron | 45.0% | |
| TTTCCTGACTCAAGCCATTG+TGG | - | chr5_2:5848243-5848262 | None:intergenic | 45.0% | |
| TATGGTACATTTGCCACAGG+AGG | + | chr5_2:5848963-5848982 | Msa0752230:CDS | 45.0% | |
| GGGACGGAAACAACAAAAAG+AGG | + | chr5_2:5849009-5849028 | Msa0752230:CDS | 45.0% | |
| CGAGGCAAATGAGAAAAACC+TGG | - | chr5_2:5849040-5849059 | None:intergenic | 45.0% | |
| AACTTGATGCAACAGCTAGG+AGG | - | chr5_2:5849185-5849204 | None:intergenic | 45.0% | |
| CGTAGATAGCATCTTGGTCA+TGG | - | chr5_2:5849319-5849338 | None:intergenic | 45.0% | |
| TGCGAACGTAGATAGCATCT+TGG | - | chr5_2:5849325-5849344 | None:intergenic | 45.0% | |
| TTGCTGTGTTGTAAAGACCC+AGG | + | chr5_2:5849608-5849627 | Msa0752230:three_prime_UTR | 45.0% | |
| TGCTGTGTTGTAAAGACCCA+GGG | + | chr5_2:5849609-5849628 | Msa0752230:three_prime_UTR | 45.0% | |
| ATAGTAGCAGTAGTCACCCT+GGG | - | chr5_2:5849628-5849647 | None:intergenic | 45.0% | |
| AATAGTAGCAGTAGTCACCC+TGG | - | chr5_2:5849629-5849648 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTAAAAAAAACT+TGG | + | chr5_2:5846672-5846691 | Msa0752230:intron | 5.0% |
| !!! | TTTTTTTTTAAAAAAAACTT+GGG | + | chr5_2:5846673-5846692 | Msa0752230:intron | 5.0% |
| ATCAACACGCGACCCAAACA+CGG | - | chr5_2:5845834-5845853 | None:intergenic | 50.0% | |
| CTCAACAATGGCAACACCAG+TGG | + | chr5_2:5845936-5845955 | Msa0752230:exon | 50.0% | |
| ! | GTTTGTTAACTCTCGACCGG+CGG | - | chr5_2:5845965-5845984 | None:intergenic | 50.0% |
| TCGAGATTCCGTCTGATGGA+GGG | - | chr5_2:5845987-5846006 | None:intergenic | 50.0% | |
| TTCGAGATTCCGTCTGATGG+AGG | - | chr5_2:5845988-5846007 | None:intergenic | 50.0% | |
| GCAACTGCAGATGTCCTTAG+AGG | + | chr5_2:5846078-5846097 | Msa0752230:CDS | 50.0% | |
| CGTGAAGGAACTCACCTCTA+AGG | - | chr5_2:5846095-5846114 | None:intergenic | 50.0% | |
| TGCTTCCATGACGACTCTTC+TGG | + | chr5_2:5846135-5846154 | Msa0752230:CDS | 50.0% | |
| AAGTAAGTAACCTGCGGCGT+AGG | - | chr5_2:5846359-5846378 | None:intergenic | 50.0% | |
| CGAGGCAATGCAAAACTGAC+TGG | - | chr5_2:5846936-5846955 | None:intergenic | 50.0% | |
| CTTGTCCACTTGCACCTCTA+GGG | - | chr5_2:5847313-5847332 | None:intergenic | 50.0% | |
| TCTTGTCCACTTGCACCTCT+AGG | - | chr5_2:5847314-5847333 | None:intergenic | 50.0% | |
| ! | GGACAAGAGCGTACTCTAGT+TGG | + | chr5_2:5847326-5847345 | Msa0752230:CDS | 50.0% |
| TGTGTACGCTGCTACCCAAA+TGG | + | chr5_2:5847503-5847522 | Msa0752230:CDS | 50.0% | |
| CGTCTATCCCGTAAATGCCA+TGG | + | chr5_2:5848038-5848057 | Msa0752230:CDS | 50.0% | |
| TTACATGGGGTGGAATGCCA+TGG | - | chr5_2:5848058-5848077 | None:intergenic | 50.0% | |
| ! | GGTTGCAAGTTGGGAAAGGT+TGG | + | chr5_2:5848355-5848374 | Msa0752230:intron | 50.0% |
| GGACGAGGAAAGATGTGCAA+AGG | + | chr5_2:5848688-5848707 | Msa0752230:intron | 50.0% | |
| TTTGCCACAGGAGGTTGTGA+CGG | + | chr5_2:5848972-5848991 | Msa0752230:CDS | 50.0% | |
| AAAACCGTCACAACCTCCTG+TGG | - | chr5_2:5848979-5848998 | None:intergenic | 50.0% | |
| ! | GAGAGTGCAGCAATGCTACT+TGG | - | chr5_2:5849144-5849163 | None:intergenic | 50.0% |
| GCACTCTCGTTTAGCAGAGA+TGG | + | chr5_2:5849156-5849175 | Msa0752230:CDS | 50.0% | |
| ! | GGAGGGAGTGTGGAGAAAAT+GGG | - | chr5_2:5849249-5849268 | None:intergenic | 50.0% |
| ACAGATTAGAGAGGGAGGGA+GGG | - | chr5_2:5849278-5849297 | None:intergenic | 50.0% | |
| AACAGATTAGAGAGGGAGGG+AGG | - | chr5_2:5849279-5849298 | None:intergenic | 50.0% | |
| !!! | TTGGGAAGGGCTTTGGGTTT+TGG | - | chr5_2:5849371-5849390 | None:intergenic | 50.0% |
| GTGAATCACGCTGCAGGATT+GGG | - | chr5_2:5849389-5849408 | None:intergenic | 50.0% | |
| AGTGAATCACGCTGCAGGAT+TGG | - | chr5_2:5849390-5849409 | None:intergenic | 50.0% | |
| AATCCTGCAGCGTGATTCAC+TGG | + | chr5_2:5849389-5849408 | Msa0752230:exon | 50.0% | |
| TCAACACGCGACCCAAACAC+GGG | - | chr5_2:5845833-5845852 | None:intergenic | 55.0% | |
| AGAGGTGAGTTCCTTCACGG+CGG | + | chr5_2:5846096-5846115 | Msa0752230:CDS | 55.0% | |
| TCTGACAGTGTTATCGGCGG+AGG | - | chr5_2:5846169-5846188 | None:intergenic | 55.0% | |
| CCGTCTGACAGTGTTATCGG+CGG | - | chr5_2:5846172-5846191 | None:intergenic | 55.0% | |
| CCGCCGATAACACTGTCAGA+CGG | + | chr5_2:5846169-5846188 | Msa0752230:CDS | 55.0% | |
| CGGCTTGTAGTAGCAACAGC+TGG | + | chr5_2:5847398-5847417 | Msa0752230:CDS | 55.0% | |
| TGGGTAGCAGCGTACACATC+TGG | - | chr5_2:5847501-5847520 | None:intergenic | 55.0% | |
| CGCTGCTACCCAAATGGAAC+AGG | + | chr5_2:5847509-5847528 | Msa0752230:CDS | 55.0% | |
| !! | TGTTGAAGGGCGGGTTGCAA+TGG | + | chr5_2:5847824-5847843 | Msa0752230:CDS | 55.0% |
| ! | TGACCTATCTGAGGCTAGCC+AGG | + | chr5_2:5847854-5847873 | Msa0752230:CDS | 55.0% |
| !! | TTGCCTGGCTAGCCTCAGAT+AGG | - | chr5_2:5847860-5847879 | None:intergenic | 55.0% |
| AAGAACCAATCTGGGGGACG+AGG | + | chr5_2:5848673-5848692 | Msa0752230:intron | 55.0% | |
| TCTTTCCTCGTCCCCCAGAT+TGG | - | chr5_2:5848681-5848700 | None:intergenic | 55.0% | |
| ! | GGGAGGGAGTGTGGAGAAAA+TGG | - | chr5_2:5849250-5849269 | None:intergenic | 55.0% |
| ATTAGAGAGGGAGGGAGGGA+GGG | - | chr5_2:5849274-5849293 | None:intergenic | 55.0% | |
| GCAGGATTGGGAAGGGCTTT+GGG | - | chr5_2:5849377-5849396 | None:intergenic | 55.0% | |
| TGCAGGATTGGGAAGGGCTT+TGG | - | chr5_2:5849378-5849397 | None:intergenic | 55.0% | |
| TCACGCTGCAGGATTGGGAA+GGG | - | chr5_2:5849384-5849403 | None:intergenic | 55.0% | |
| ATCACGCTGCAGGATTGGGA+AGG | - | chr5_2:5849385-5849404 | None:intergenic | 55.0% | |
| GAACCAGTGAATCACGCTGC+AGG | - | chr5_2:5849395-5849414 | None:intergenic | 55.0% | |
| CAACACGCGACCCAAACACG+GGG | - | chr5_2:5845832-5845851 | None:intergenic | 60.0% | |
| GCAACACCAGTGGTATCCGC+CGG | + | chr5_2:5845946-5845965 | Msa0752230:CDS | 60.0% | |
| CAAGAACAGGTCCGCCGTGA+AGG | - | chr5_2:5846110-5846129 | None:intergenic | 60.0% | |
| GTTGAGTACTCCTACGCCGC+AGG | + | chr5_2:5846346-5846365 | Msa0752230:CDS | 60.0% | |
| ! | TGGGACCCTAGAGGTGCAAG+TGG | + | chr5_2:5847305-5847324 | Msa0752230:CDS | 60.0% |
| GATTAGAGAGGGAGGGAGGG+AGG | - | chr5_2:5849275-5849294 | None:intergenic | 60.0% | |
| TCTCGACCGGCGGATACCAC+TGG | - | chr5_2:5845955-5845974 | None:intergenic | 65.0% | |
| AGGGAGGGAGGGAGGGAGTG+TGG | - | chr5_2:5849259-5849278 | None:intergenic | 70.0% | |
| GAGAGGGAGGGAGGGAGGGA+GGG | - | chr5_2:5849270-5849289 | None:intergenic | 70.0% | |
| AGAGAGGGAGGGAGGGAGGG+AGG | - | chr5_2:5849271-5849290 | None:intergenic | 70.0% | |
| GGGAGGGAGGGAGGGAGGGA+GGG | - | chr5_2:5849262-5849281 | None:intergenic | 75.0% | |
| AGGGAGGGAGGGAGGGAGGG+AGG | - | chr5_2:5849263-5849282 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 5845768 | 5849715 | 5845768 | ID=Msa0752230;Name=Msa0752230 |
| chr5_2 | mRNA | 5845768 | 5849715 | 5845768 | ID=Msa0752230-mRNA-1;Parent=Msa0752230;Name=Msa0752230-mRNA-1;_AED=0.07;_eAED=0.07;_QI=175|1|1|1|1|1|8|312|340 |
| chr5_2 | exon | 5845768 | 5846190 | 5845768 | ID=Msa0752230-mRNA-1:exon:2400;Parent=Msa0752230-mRNA-1 |
| chr5_2 | exon | 5846285 | 5846367 | 5846285 | ID=Msa0752230-mRNA-1:exon:2401;Parent=Msa0752230-mRNA-1 |
| chr5_2 | exon | 5847264 | 5847530 | 5847264 | ID=Msa0752230-mRNA-1:exon:2402;Parent=Msa0752230-mRNA-1 |
| chr5_2 | exon | 5847808 | 5847883 | 5847808 | ID=Msa0752230-mRNA-1:exon:2403;Parent=Msa0752230-mRNA-1 |
| chr5_2 | exon | 5847993 | 5848073 | 5847993 | ID=Msa0752230-mRNA-1:exon:2404;Parent=Msa0752230-mRNA-1 |
| chr5_2 | exon | 5848962 | 5849040 | 5848962 | ID=Msa0752230-mRNA-1:exon:2405;Parent=Msa0752230-mRNA-1 |
| chr5_2 | exon | 5849129 | 5849229 | 5849129 | ID=Msa0752230-mRNA-1:exon:2406;Parent=Msa0752230-mRNA-1 |
| chr5_2 | exon | 5849316 | 5849715 | 5849316 | ID=Msa0752230-mRNA-1:exon:2407;Parent=Msa0752230-mRNA-1 |
| chr5_2 | five_prime_UTR | 5845768 | 5845942 | 5845768 | ID=Msa0752230-mRNA-1:five_prime_utr;Parent=Msa0752230-mRNA-1 |
| chr5_2 | CDS | 5845943 | 5846190 | 5845943 | ID=Msa0752230-mRNA-1:cds;Parent=Msa0752230-mRNA-1 |
| chr5_2 | CDS | 5846285 | 5846367 | 5846285 | ID=Msa0752230-mRNA-1:cds;Parent=Msa0752230-mRNA-1 |
| chr5_2 | CDS | 5847264 | 5847530 | 5847264 | ID=Msa0752230-mRNA-1:cds;Parent=Msa0752230-mRNA-1 |
| chr5_2 | CDS | 5847808 | 5847883 | 5847808 | ID=Msa0752230-mRNA-1:cds;Parent=Msa0752230-mRNA-1 |
| chr5_2 | CDS | 5847993 | 5848073 | 5847993 | ID=Msa0752230-mRNA-1:cds;Parent=Msa0752230-mRNA-1 |
| chr5_2 | CDS | 5848962 | 5849040 | 5848962 | ID=Msa0752230-mRNA-1:cds;Parent=Msa0752230-mRNA-1 |
| chr5_2 | CDS | 5849129 | 5849229 | 5849129 | ID=Msa0752230-mRNA-1:cds;Parent=Msa0752230-mRNA-1 |
| chr5_2 | CDS | 5849316 | 5849403 | 5849316 | ID=Msa0752230-mRNA-1:cds;Parent=Msa0752230-mRNA-1 |
| chr5_2 | three_prime_UTR | 5849404 | 5849715 | 5849404 | ID=Msa0752230-mRNA-1:three_prime_utr;Parent=Msa0752230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
