Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448960 | sp|Q93V51|PSE1_ARATH | 53.527 | 241 | 104 | 3 | 1 | 236 | 1 | 238 | 6.35e-85 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448960 | I3SHV8 | 98.069 | 259 | 4 | 1 | 1 | 258 | 1 | 259 | 0.0 | 526 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063190 | Msa1448960 | 0.836301 | 1.013836e-56 | -8.615850e-47 |
| Msa0080440 | Msa1448960 | 0.800906 | 1.156644e-48 | -8.615850e-47 |
| Msa0108630 | Msa1448960 | 0.832466 | 9.304120e-56 | -8.615850e-47 |
| Msa1363010 | Msa1448960 | 0.801798 | 7.596290e-49 | -8.615850e-47 |
| Msa1368170 | Msa1448960 | 0.850067 | 2.158027e-60 | -8.615850e-47 |
| Msa1369010 | Msa1448960 | 0.805311 | 1.419491e-49 | -8.615850e-47 |
| Msa1381800 | Msa1448960 | 0.805502 | 1.294146e-49 | -8.615850e-47 |
| Msa1385570 | Msa1448960 | 0.836621 | 8.406930e-57 | -8.615850e-47 |
| Msa1389820 | Msa1448960 | 0.811773 | 5.918919e-51 | -8.615850e-47 |
| Msa1393850 | Msa1448960 | 0.802377 | 5.773838e-49 | -8.615850e-47 |
| Msa1408160 | Msa1448960 | 0.993937 | 2.483234e-203 | -8.615850e-47 |
| Msa1410160 | Msa1448960 | 0.807299 | 5.410688e-50 | -8.615850e-47 |
| Msa1420830 | Msa1448960 | 0.830920 | 2.237202e-55 | -8.615850e-47 |
| Msa0625340 | Msa1448960 | 0.808377 | 3.191310e-50 | -8.615850e-47 |
| Msa0647440 | Msa1448960 | 0.800497 | 1.401915e-48 | -8.615850e-47 |
| Msa0660260 | Msa1448960 | 0.815488 | 9.009352e-52 | -8.615850e-47 |
| Msa0687090 | Msa1448960 | 0.813208 | 2.876032e-51 | -8.615850e-47 |
| Msa0688620 | Msa1448960 | 0.802412 | 5.678484e-49 | -8.615850e-47 |
| Msa0749190 | Msa1448960 | 0.809435 | 1.895045e-50 | -8.615850e-47 |
| Msa0750520 | Msa1448960 | 0.803685 | 3.098691e-49 | -8.615850e-47 |
| Msa0752230 | Msa1448960 | 0.807833 | 4.166178e-50 | -8.615850e-47 |
| Msa0774060 | Msa1448960 | 0.816559 | 5.195462e-52 | -8.615850e-47 |
| Msa0827420 | Msa1448960 | 0.807205 | 5.664450e-50 | -8.615850e-47 |
| Msa0172590 | Msa1448960 | 0.807196 | 5.687129e-50 | -8.615850e-47 |
| Msa0195440 | Msa1448960 | 0.831573 | 1.546190e-55 | -8.615850e-47 |
| Msa0237240 | Msa1448960 | 0.836202 | 1.074648e-56 | -8.615850e-47 |
| Msa1236150 | Msa1448960 | 0.827866 | 1.234573e-54 | -8.615850e-47 |
| Msa1299980 | Msa1448960 | 0.840671 | 7.555441e-58 | -8.615850e-47 |
| Msa1301980 | Msa1448960 | 0.846382 | 2.250004e-59 | -8.615850e-47 |
| Msa1302000 | Msa1448960 | 0.808872 | 2.501234e-50 | -8.615850e-47 |
| Msa1308860 | Msa1448960 | 0.818721 | 1.690751e-52 | -8.615850e-47 |
| Msa1331650 | Msa1448960 | 0.872873 | 2.275568e-67 | -8.615850e-47 |
| Msa1333500 | Msa1448960 | 0.859940 | 2.921640e-63 | -8.615850e-47 |
| Msa1342810 | Msa1448960 | 0.818123 | 2.309518e-52 | -8.615850e-47 |
| Msa0401060 | Msa1448960 | 0.837887 | 3.985732e-57 | -8.615850e-47 |
| Msa0447870 | Msa1448960 | 0.814738 | 1.322502e-51 | -8.615850e-47 |
| Msa0460640 | Msa1448960 | 0.801906 | 7.219367e-49 | -8.615850e-47 |
| Msa0465610 | Msa1448960 | 0.818282 | 2.126529e-52 | -8.615850e-47 |
| Msa0999950 | Msa1448960 | 0.806120 | 9.599460e-50 | -8.615850e-47 |
| Msa1000970 | Msa1448960 | 0.822647 | 2.118183e-53 | -8.615850e-47 |
| Msa1008850 | Msa1448960 | 0.809680 | 1.678913e-50 | -8.615850e-47 |
| Msa1071410 | Msa1448960 | 0.802207 | 6.259013e-49 | -8.615850e-47 |
| Msa1078080 | Msa1448960 | 0.820534 | 6.520621e-53 | -8.615850e-47 |
| Msa1085680 | Msa1448960 | 0.823904 | 1.077551e-53 | -8.615850e-47 |
| Msa0257300 | Msa1448960 | 0.816763 | 4.676627e-52 | -8.615850e-47 |
| Msa0296600 | Msa1448960 | 0.839160 | 1.871079e-57 | -8.615850e-47 |
| Msa0331110 | Msa1448960 | 0.808533 | 2.956345e-50 | -8.615850e-47 |
| Msa0334990 | Msa1448960 | 0.826851 | 2.161933e-54 | -8.615850e-47 |
| Msa0344110 | Msa1448960 | 0.801616 | 8.278117e-49 | -8.615850e-47 |
| Msa0356640 | Msa1448960 | 0.806791 | 6.930477e-50 | -8.615850e-47 |
| Msa1138800 | Msa1448960 | 0.818657 | 1.748378e-52 | -8.615850e-47 |
| Msa1144990 | Msa1448960 | 0.811623 | 6.380404e-51 | -8.615850e-47 |
| Msa1166290 | Msa1448960 | 0.805682 | 1.186280e-49 | -8.615850e-47 |
| Msa1212700 | Msa1448960 | 0.877129 | 8.050667e-69 | -8.615850e-47 |
| Msa1212920 | Msa1448960 | 0.883467 | 4.376218e-71 | -8.615850e-47 |
| Msa1216090 | Msa1448960 | 0.822603 | 2.168880e-53 | -8.615850e-47 |
| Msa1216340 | Msa1448960 | 0.834997 | 2.167840e-56 | -8.615850e-47 |
| Msa0495620 | Msa1448960 | 0.811122 | 8.198960e-51 | -8.615850e-47 |
| Msa0521510 | Msa1448960 | 0.800028 | 1.746245e-48 | -8.615850e-47 |
| Msa0537990 | Msa1448960 | 0.808126 | 3.610023e-50 | -8.615850e-47 |
| Msa0548350 | Msa1448960 | 0.803768 | 2.977927e-49 | -8.615850e-47 |
| Msa0552570 | Msa1448960 | 0.817996 | 2.467958e-52 | -8.615850e-47 |
| Msa0571350 | Msa1448960 | 0.850790 | 1.352395e-60 | -8.615850e-47 |
| Msa0574660 | Msa1448960 | 0.808289 | 3.331866e-50 | -8.615850e-47 |
| Msa0576330 | Msa1448960 | 0.825644 | 4.188408e-54 | -8.615850e-47 |
| Msa0580940 | Msa1448960 | 0.992030 | 6.638265e-191 | -8.615850e-47 |
| Msa0901150 | Msa1448960 | 0.841304 | 5.154162e-58 | -8.615850e-47 |
| Msa0926080 | Msa1448960 | 0.831905 | 1.280494e-55 | -8.615850e-47 |
| Msa0966710 | Msa1448960 | 0.825659 | 4.154243e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448960 | MtrunA17_Chr7g0275931 | 98.069 | 259 | 4 | 1 | 1 | 258 | 1 | 259 | 0.0 | 526 |
| Msa1448960 | MtrunA17_Chr1g0177711 | 52.917 | 240 | 109 | 2 | 1 | 237 | 1 | 239 | 4.90e-89 | 265 |
| Msa1448960 | MtrunA17_Chr5g0433261 | 51.464 | 239 | 105 | 3 | 1 | 232 | 1 | 235 | 1.40e-76 | 232 |
| Msa1448960 | MtrunA17_Chr3g0109371 | 44.351 | 239 | 110 | 5 | 1 | 226 | 17 | 245 | 4.18e-62 | 196 |
| Msa1448960 | MtrunA17_Chr3g0109361 | 36.576 | 257 | 113 | 5 | 8 | 222 | 2 | 250 | 5.01e-46 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448960 | AT1G01225.1 | 75.424 | 236 | 57 | 1 | 1 | 236 | 1 | 235 | 2.76e-135 | 382 |
| Msa1448960 | AT4G00905.1 | 71.255 | 247 | 62 | 1 | 1 | 238 | 1 | 247 | 3.02e-130 | 369 |
| Msa1448960 | AT5G06370.1 | 53.527 | 241 | 104 | 3 | 1 | 236 | 1 | 238 | 6.45e-86 | 256 |
| Msa1448960 | AT3G02700.1 | 51.653 | 242 | 105 | 5 | 1 | 236 | 1 | 236 | 1.46e-75 | 230 |
| Msa1448960 | AT5G16360.1 | 41.912 | 272 | 122 | 6 | 1 | 237 | 1 | 271 | 4.37e-63 | 199 |
| Msa1448960 | AT5G16330.1 | 43.750 | 240 | 107 | 5 | 1 | 232 | 9 | 228 | 9.47e-58 | 184 |
Find 88 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATGTATCTTCTTCAAAA+TGG | 0.253229 | tig0032353:-10407 | Msa1448960:CDS |
| GGTCAAGCTTCTTCTGTTAT+TGG | 0.264756 | tig0032353:-10284 | Msa1448960:CDS |
| TATCTTCTTCAAAATGGTTT+TGG | 0.282564 | tig0032353:-10401 | Msa1448960:CDS |
| GCTCGATGGATAACAGTTTC+AGG | 0.291481 | tig0032353:+10428 | None:intergenic |
| CCTTTCCTGATTGTGGGTTC+AGG | 0.306141 | tig0032353:-10595 | Msa1448960:CDS |
| ATCTGCTGAATTGATATATA+AGG | 0.319784 | tig0032353:-9920 | Msa1448960:three_prime_UTR |
| ATTGACTTAAAGTTTCTATC+AGG | 0.325786 | tig0032353:+10668 | None:intergenic |
| GTCCCACCTTTCCTGATTGT+GGG | 0.332185 | tig0032353:-10601 | Msa1448960:CDS |
| TTTGCAATGTACTGCAAAAC+TGG | 0.342481 | tig0032353:-10344 | Msa1448960:CDS |
| TGTCCCACCTTTCCTGATTG+TGG | 0.372248 | tig0032353:-10602 | Msa1448960:CDS |
| AGAAGACTTGGCTGTGAACT+TGG | 0.382220 | tig0032353:-10114 | Msa1448960:CDS |
| GAAGAAAGCATTGCAGCTAA+TGG | 0.389297 | tig0032353:+10257 | None:intergenic |
| GGGTGTGGGGTGGAGTGGAG+TGG | 0.396580 | tig0032353:-12038 | Msa1448960:five_prime_UTR |
| GAAGTGATGTGGTCAAGGTT+GGG | 0.403253 | tig0032353:-10139 | Msa1448960:CDS |
| TGCAGATGAGAACACTATAT+TGG | 0.412285 | tig0032353:-9684 | Msa1448960:three_prime_UTR |
| TAGCTAAATCATATGATAAT+CGG | 0.420349 | tig0032353:+10038 | None:intergenic |
| GGAGTGAGTGTGTGTCTGTC+TGG | 0.429073 | tig0032353:-12003 | Msa1448960:five_prime_UTR |
| GTGGAGTGGACTAAGGTAAG+AGG | 0.430880 | tig0032353:-12024 | Msa1448960:five_prime_UTR |
| TTATTGGATTCCATTTCAAT+TGG | 0.435157 | tig0032353:+12105 | None:intergenic |
| AGTGGTTCGGTTACAATTGA+AGG | 0.452856 | tig0032353:+9713 | None:intergenic |
| ATTGTAGACAAGCAAGGAGT+TGG | 0.458301 | tig0032353:-10314 | Msa1448960:CDS |
| AGACAGACAAACGGTGGGTG+TGG | 0.460870 | tig0032353:-12053 | Msa1448960:five_prime_UTR |
| CAAGTTACTCATGTTGTACA+TGG | 0.470133 | tig0032353:-9843 | Msa1448960:three_prime_UTR |
| AAGTGATGTGGTCAAGGTTG+GGG | 0.470724 | tig0032353:-10138 | Msa1448960:CDS |
| GGTTGCCTGAACCCACAATC+AGG | 0.472264 | tig0032353:+10590 | None:intergenic |
| TTGATCTGAATAGAAGTGAA+TGG | 0.473662 | tig0032353:-11954 | Msa1448960:exon |
| ACGGTGGGTGTGGGGTGGAG+TGG | 0.475455 | tig0032353:-12043 | Msa1448960:five_prime_UTR |
| TCCGATGAGGAGGAGGTAGT+TGG | 0.476309 | tig0032353:-10080 | Msa1448960:CDS |
| GAAAGAACTACTCCACTATT+CGG | 0.477232 | tig0032353:+10569 | None:intergenic |
| TGATCTGAATAGAAGTGAAT+GGG | 0.478948 | tig0032353:-11953 | Msa1448960:exon |
| GGGTGGAGTGGAGTGGACTA+AGG | 0.481268 | tig0032353:-12031 | Msa1448960:five_prime_UTR |
| AGAAGTGATGTGGTCAAGGT+TGG | 0.486475 | tig0032353:-10140 | Msa1448960:CDS |
| CAATCAGGAAAGGTGGGACA+AGG | 0.488425 | tig0032353:+10605 | None:intergenic |
| GTGGGACAAGGGGTTGGTGT+TGG | 0.491703 | tig0032353:+10617 | None:intergenic |
| TGGGTGGGGACCAATTGAAA+TGG | 0.492897 | tig0032353:-12115 | None:intergenic |
| CAAGGTTGGGGTAGAAGACT+TGG | 0.494212 | tig0032353:-10126 | Msa1448960:CDS |
| ATCTGCACAGCAAAGTGGTT+CGG | 0.499108 | tig0032353:+9700 | None:intergenic |
| AGCTTCACCGTGATGAGAAT+AGG | 0.508555 | tig0032353:+11856 | None:intergenic |
| GGGTTCAGGCAACCGAATAG+TGG | 0.509445 | tig0032353:-10581 | Msa1448960:CDS |
| ATAACAGTTTCAGGTGGGTC+GGG | 0.514072 | tig0032353:+10437 | None:intergenic |
| TTAGACTGCTTCCTTCGAAA+CGG | 0.516654 | tig0032353:-10542 | Msa1448960:CDS |
| AAGCAAGGAGTTGGAAGAAG+TGG | 0.518050 | tig0032353:-10305 | Msa1448960:CDS |
| ATTACTTCTAAGCTACCAAA+TGG | 0.521090 | tig0032353:+9745 | None:intergenic |
| GACAGACAAACGGTGGGTGT+GGG | 0.522004 | tig0032353:-12052 | Msa1448960:five_prime_UTR |
| GCACGTGCCACCTCTTATCC+TGG | 0.523495 | tig0032353:+10472 | None:intergenic |
| ATAGGAGAAAACAGCTCTGT+AGG | 0.528737 | tig0032353:+11874 | None:intergenic |
| GGAAAGGTGGGACAAGGGGT+TGG | 0.535853 | tig0032353:+10611 | None:intergenic |
| GACTTGTTCCGATGAGGAGG+AGG | 0.537304 | tig0032353:-10087 | Msa1448960:CDS |
| GAGGAGGAGGTAGTTGGAGA+TGG | 0.545453 | tig0032353:-10074 | Msa1448960:CDS |
| GTTACCGTAGCCATACCAAC+AGG | 0.545756 | tig0032353:+10209 | None:intergenic |
| TTGTTAATGCCGAGTCCTGT+TGG | 0.549441 | tig0032353:-10224 | Msa1448960:CDS |
| GATAACAGTTTCAGGTGGGT+CGG | 0.549630 | tig0032353:+10436 | None:intergenic |
| ATTCAGCAGATGTAAAATGA+AGG | 0.550749 | tig0032353:+9932 | None:intergenic |
| ACAGACAAACGGTGGGTGTG+GGG | 0.558187 | tig0032353:-12051 | Msa1448960:five_prime_UTR |
| AGTAGATATGCAACTGACAT+TGG | 0.566026 | tig0032353:-10167 | Msa1448960:CDS |
| GTAGGTGTAGACATGATCAC+CGG | 0.568352 | tig0032353:+11892 | None:intergenic |
| ACTTGGCTGTGAACTTGGGA+TGG | 0.569461 | tig0032353:-10109 | Msa1448960:CDS |
| GTTCGGTTACAATTGAAGGT+AGG | 0.569462 | tig0032353:+9717 | None:intergenic |
| GAGAGACACGACATCAAACC+CGG | 0.570178 | tig0032353:-11911 | Msa1448960:CDS |
| AATCCAATAATATTGAAAAG+TGG | 0.577825 | tig0032353:-12092 | Msa1448960:five_prime_UTR |
| AATGCCGAGTCCTGTTGGTA+TGG | 0.579949 | tig0032353:-10219 | Msa1448960:CDS |
| ATCAGGAAAGGTGGGACAAG+GGG | 0.583759 | tig0032353:+10607 | None:intergenic |
| AGTAAAGAGAACCGTTTCGA+AGG | 0.585696 | tig0032353:+10531 | None:intergenic |
| TCCAACTACCTCCTCCTCAT+CGG | 0.586315 | tig0032353:+10079 | None:intergenic |
| GACAAACGGTGGGTGTGGGG+TGG | 0.589370 | tig0032353:-12048 | Msa1448960:five_prime_UTR |
| CATTAGAAGTGATGTGGTCA+AGG | 0.589386 | tig0032353:-10144 | Msa1448960:CDS |
| ATGGACTTGTTCCGATGAGG+AGG | 0.591554 | tig0032353:-10090 | Msa1448960:CDS |
| AATCAGGAAAGGTGGGACAA+GGG | 0.592653 | tig0032353:+10606 | None:intergenic |
| GAGTCCTGTTGGTATGGCTA+CGG | 0.594150 | tig0032353:-10213 | Msa1448960:CDS |
| CGATGGATAACAGTTTCAGG+TGG | 0.599166 | tig0032353:+10431 | None:intergenic |
| GAAGACTTGGCTGTGAACTT+GGG | 0.599819 | tig0032353:-10113 | Msa1448960:CDS |
| GAACCCACAATCAGGAAAGG+TGG | 0.600274 | tig0032353:+10598 | None:intergenic |
| GGTATGGCTACGGTAACAGC+AGG | 0.600551 | tig0032353:-10203 | Msa1448960:CDS |
| AACCCACAATCAGGAAAGGT+GGG | 0.602727 | tig0032353:+10599 | None:intergenic |
| GAAGAAGATACATTGCTCGA+TGG | 0.604177 | tig0032353:+10414 | None:intergenic |
| CAGTAACACAGACAGACAAA+CGG | 0.610216 | tig0032353:-12062 | Msa1448960:five_prime_UTR |
| TTCTCATCTGCACAGCAAAG+TGG | 0.618458 | tig0032353:+9695 | None:intergenic |
| CTCGGCATTAACAACTTGAG+AGG | 0.635148 | tig0032353:+10233 | None:intergenic |
| CCTGAACCCACAATCAGGAA+AGG | 0.637605 | tig0032353:+10595 | None:intergenic |
| TTTCTTACCAGGATAAGAGG+TGG | 0.640216 | tig0032353:-10479 | Msa1448960:CDS |
| GGGATGGACTTGTTCCGATG+AGG | 0.647617 | tig0032353:-10093 | Msa1448960:CDS |
| TAACACAGACAGACAAACGG+TGG | 0.673793 | tig0032353:-12059 | Msa1448960:five_prime_UTR |
| GATGGATAACAGTTTCAGGT+GGG | 0.675658 | tig0032353:+10432 | None:intergenic |
| GTAGCCATACCAACAGGACT+CGG | 0.681475 | tig0032353:+10215 | None:intergenic |
| AACACAGACAGACAAACGGT+GGG | 0.681621 | tig0032353:-12058 | Msa1448960:five_prime_UTR |
| TAGGTGTAGACATGATCACC+GGG | 0.692039 | tig0032353:+11893 | None:intergenic |
| CATTGGCATTAGAAGTGATG+TGG | 0.712623 | tig0032353:-10150 | Msa1448960:CDS |
| AAGTTACTCATGTTGTACAT+GGG | 0.721681 | tig0032353:-9842 | Msa1448960:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTATATTCATAATGATTT+TGG | - | tig0032353:10972-10991 | Msa1448960:intron | 15.0% |
| !! | AATCCAATAATATTGAAAAG+TGG | - | tig0032353:9674-9693 | Msa1448960:three_prime_UTR | 20.0% |
| !!! | TTGTTATTCTTTTGTTTTGT+TGG | - | tig0032353:9977-9996 | Msa1448960:three_prime_UTR | 20.0% |
| !!! | TATATTTTCTGCTTATTTCT+CGG | - | tig0032353:10080-10099 | Msa1448960:CDS | 20.0% |
| !!! | AAATTCATTTTTATCACTCT+AGG | - | tig0032353:10560-10579 | Msa1448960:CDS | 20.0% |
| !! | TAGCTAAATCATATGATAAT+CGG | + | tig0032353:11731-11750 | None:intergenic | 20.0% |
| !! | AAAAGAAAAAGAAAAGAGAA+AGG | + | tig0032353:11872-11891 | None:intergenic | 20.0% |
| !!! | GTATCTTTTACAATAATAGT+TGG | - | tig0032353:11897-11916 | Msa1448960:CDS | 20.0% |
| ! | TTATTGGATTCCATTTCAAT+TGG | + | tig0032353:9664-9683 | None:intergenic | 25.0% |
| !!! | TTGCCACTTTTCAATATTAT+TGG | + | tig0032353:9680-9699 | None:intergenic | 25.0% |
| ! | ACAATAACAAAATAGCAGAT+TGG | + | tig0032353:9961-9980 | None:intergenic | 25.0% |
| !! | TTTCAAGCGTTTGATTTAAA+TGG | + | tig0032353:10190-10209 | None:intergenic | 25.0% |
| !! | TCAATGAAATTTCTGTTTTG+AGG | - | tig0032353:10374-10393 | Msa1448960:CDS | 25.0% |
| !!! | CAATGAAATTTCTGTTTTGA+GGG | - | tig0032353:10375-10394 | Msa1448960:CDS | 25.0% |
| !!! | TGGTTGATAACATATTGATT+TGG | + | tig0032353:10595-10614 | None:intergenic | 25.0% |
| ! | ACTAAGTAAGTAGTAAAAAC+TGG | + | tig0032353:10620-10639 | None:intergenic | 25.0% |
| !!! | CATTCTGTTTTTCATCATTT+CGG | - | tig0032353:10655-10674 | Msa1448960:CDS | 25.0% |
| !!! | ATTCTGTTTTTCATCATTTC+GGG | - | tig0032353:10656-10675 | Msa1448960:CDS | 25.0% |
| ! | CAGAATTCTGACTAATTAAT+TGG | + | tig0032353:10862-10881 | None:intergenic | 25.0% |
| !! | ATTGACTTAAAGTTTCTATC+AGG | + | tig0032353:11101-11120 | None:intergenic | 25.0% |
| !! | TATCTTCTTCAAAATGGTTT+TGG | - | tig0032353:11365-11384 | Msa1448960:intron | 25.0% |
| ! | ATCTGCTGAATTGATATATA+AGG | - | tig0032353:11846-11865 | Msa1448960:intron | 25.0% |
| TTGATCTGAATAGAAGTGAA+TGG | - | tig0032353:9812-9831 | Msa1448960:three_prime_UTR | 30.0% | |
| TGATCTGAATAGAAGTGAAT+GGG | - | tig0032353:9813-9832 | Msa1448960:three_prime_UTR | 30.0% | |
| TTGTGAGATTATGATAAGTG+AGG | + | tig0032353:10028-10047 | None:intergenic | 30.0% | |
| ATTTAAGCGATGACTATGAT+GGG | + | tig0032353:10328-10347 | None:intergenic | 30.0% | |
| AATTTCATTGACAGAACAGA+AGG | + | tig0032353:10365-10384 | None:intergenic | 30.0% | |
| !!! | AAATTTCTGTTTTGAGGGAT+AGG | - | tig0032353:10380-10399 | Msa1448960:CDS | 30.0% |
| CTGATACAACAAAGTAACTA+GGG | - | tig0032353:10537-10556 | Msa1448960:CDS | 30.0% | |
| GTAAGTAGTAAAAACTGGTA+TGG | + | tig0032353:10615-10634 | None:intergenic | 30.0% | |
| CGAAATGATGAAAAACAGAA+TGG | + | tig0032353:10657-10676 | None:intergenic | 30.0% | |
| AAGCAAGTTCTTAGGAATTA+AGG | + | tig0032353:10751-10770 | None:intergenic | 30.0% | |
| !! | TCTCTTTACTGTTTTGAGTA+TGG | - | tig0032353:11248-11267 | Msa1448960:intron | 30.0% |
| GCAATGTATCTTCTTCAAAA+TGG | - | tig0032353:11359-11378 | Msa1448960:intron | 30.0% | |
| ATTCAGCAGATGTAAAATGA+AGG | + | tig0032353:11837-11856 | None:intergenic | 30.0% | |
| AAGTTACTCATGTTGTACAT+GGG | - | tig0032353:11924-11943 | Msa1448960:CDS | 30.0% | |
| !!! | CTTTGAGATGATTTTCCATT+TGG | - | tig0032353:12006-12025 | Msa1448960:five_prime_UTR | 30.0% |
| ATTACTTCTAAGCTACCAAA+TGG | + | tig0032353:12024-12043 | None:intergenic | 30.0% | |
| ! | GTTTTCTCCTATTCTCATCA+CGG | - | tig0032353:9903-9922 | Msa1448960:three_prime_UTR | 35.0% |
| ATGATGACAGACAAATGTTG+GGG | + | tig0032353:10277-10296 | None:intergenic | 35.0% | |
| GATGATGACAGACAAATGTT+GGG | + | tig0032353:10278-10297 | None:intergenic | 35.0% | |
| ! | TGATGATGACAGACAAATGT+TGG | + | tig0032353:10279-10298 | None:intergenic | 35.0% |
| CATTTGTCTGTCATCATCAT+TGG | - | tig0032353:10280-10299 | Msa1448960:CDS | 35.0% | |
| CATTTAAGCGATGACTATGA+TGG | + | tig0032353:10329-10348 | None:intergenic | 35.0% | |
| GCTGATACAACAAAGTAACT+AGG | - | tig0032353:10536-10555 | Msa1448960:CDS | 35.0% | |
| GTTCTTAGGAATTAAGGCTA+AGG | + | tig0032353:10745-10764 | None:intergenic | 35.0% | |
| GAAAGTAGAAGCAAGTTCTT+AGG | + | tig0032353:10759-10778 | None:intergenic | 35.0% | |
| ! | TGTTCTGTGTGCTTTTGTTA+TGG | - | tig0032353:10833-10852 | Msa1448960:intron | 35.0% |
| !! | CATATCAAGTTGAAGAAGTG+AGG | + | tig0032353:10933-10952 | None:intergenic | 35.0% |
| CTCACTTCTTCAACTTGATA+TGG | - | tig0032353:10931-10950 | Msa1448960:intron | 35.0% | |
| GTATCAGGTTCAATTGAACT+AGG | + | tig0032353:11027-11046 | None:intergenic | 35.0% | |
| GAAAGAACTACTCCACTATT+CGG | + | tig0032353:11200-11219 | None:intergenic | 35.0% | |
| ! | GTTTTTCTTACCAGGATAAG+AGG | - | tig0032353:11284-11303 | Msa1448960:intron | 35.0% |
| !! | TGTTTTTCAGAACAACTGTG+AGG | - | tig0032353:11397-11416 | Msa1448960:intron | 35.0% |
| TTTGCAATGTACTGCAAAAC+TGG | - | tig0032353:11422-11441 | Msa1448960:intron | 35.0% | |
| !! | CTTTTGATTGTAGACAAGCA+AGG | - | tig0032353:11446-11465 | Msa1448960:intron | 35.0% |
| AGTAGATATGCAACTGACAT+TGG | - | tig0032353:11599-11618 | Msa1448960:intron | 35.0% | |
| CAAGTTACTCATGTTGTACA+TGG | - | tig0032353:11923-11942 | Msa1448960:CDS | 35.0% | |
| TGCAGATGAGAACACTATAT+TGG | - | tig0032353:12082-12101 | Msa1448960:five_prime_UTR | 35.0% | |
| CAGTAACACAGACAGACAAA+CGG | - | tig0032353:9704-9723 | Msa1448960:three_prime_UTR | 40.0% | |
| ATAGGAGAAAACAGCTCTGT+AGG | + | tig0032353:9895-9914 | None:intergenic | 40.0% | |
| TGATGACAGACAAATGTTGG+GGG | + | tig0032353:10276-10295 | None:intergenic | 40.0% | |
| TCATTGGAAAACAACTGCAC+TGG | - | tig0032353:10296-10315 | Msa1448960:CDS | 40.0% | |
| !!! | TCTGTTTTGAGGGATAGGAT+AGG | - | tig0032353:10385-10404 | Msa1448960:CDS | 40.0% |
| TTTGAGGGATAGGATAGGAT+AGG | - | tig0032353:10390-10409 | Msa1448960:CDS | 40.0% | |
| GGATAGGATAGGATAGTACA+AGG | - | tig0032353:10406-10425 | Msa1448960:CDS | 40.0% | |
| TTTCTACTCCTTACGACTGT+AGG | - | tig0032353:10775-10794 | Msa1448960:intron | 40.0% | |
| TCAATCTTCCTACAGTCGTA+AGG | + | tig0032353:10786-10805 | None:intergenic | 40.0% | |
| CAAAAATGCCTGCATAGCAT+TGG | + | tig0032353:11049-11068 | None:intergenic | 40.0% | |
| ! | TGCTATGCAGGCATTTTTGT+TGG | - | tig0032353:11050-11069 | Msa1448960:intron | 40.0% |
| ! | GCTATGCAGGCATTTTTGTT+GGG | - | tig0032353:11051-11070 | Msa1448960:intron | 40.0% |
| ! | CTATGCAGGCATTTTTGTTG+GGG | - | tig0032353:11052-11071 | Msa1448960:intron | 40.0% |
| ! | TATGCAGGCATTTTTGTTGG+GGG | - | tig0032353:11053-11072 | Msa1448960:intron | 40.0% |
| TTAGACTGCTTCCTTCGAAA+CGG | - | tig0032353:11224-11243 | Msa1448960:intron | 40.0% | |
| AGTAAAGAGAACCGTTTCGA+AGG | + | tig0032353:11238-11257 | None:intergenic | 40.0% | |
| ATCCTGGTAAGAAAAACTGC+TGG | + | tig0032353:11281-11300 | None:intergenic | 40.0% | |
| TTTCTTACCAGGATAAGAGG+TGG | - | tig0032353:11287-11306 | Msa1448960:intron | 40.0% | |
| ! | GATGGATAACAGTTTCAGGT+GGG | + | tig0032353:11337-11356 | None:intergenic | 40.0% |
| GAAGAAGATACATTGCTCGA+TGG | + | tig0032353:11355-11374 | None:intergenic | 40.0% | |
| ATTGTAGACAAGCAAGGAGT+TGG | - | tig0032353:11452-11471 | Msa1448960:intron | 40.0% | |
| GGTCAAGCTTCTTCTGTTAT+TGG | - | tig0032353:11482-11501 | Msa1448960:intron | 40.0% | |
| !! | GAAGAAAGCATTGCAGCTAA+TGG | + | tig0032353:11512-11531 | None:intergenic | 40.0% |
| CATTGGCATTAGAAGTGATG+TGG | - | tig0032353:11616-11635 | Msa1448960:intron | 40.0% | |
| CATTAGAAGTGATGTGGTCA+AGG | - | tig0032353:11622-11641 | Msa1448960:intron | 40.0% | |
| ! | CAGAAGTTTTCATGTGCACA+AGG | + | tig0032353:11766-11785 | None:intergenic | 40.0% |
| GTTCGGTTACAATTGAAGGT+AGG | + | tig0032353:12052-12071 | None:intergenic | 40.0% | |
| !! | AGTGGTTCGGTTACAATTGA+AGG | + | tig0032353:12056-12075 | None:intergenic | 40.0% |
| TAACACAGACAGACAAACGG+TGG | - | tig0032353:9707-9726 | Msa1448960:three_prime_UTR | 45.0% | |
| AACACAGACAGACAAACGGT+GGG | - | tig0032353:9708-9727 | Msa1448960:three_prime_UTR | 45.0% | |
| TAGGTGTAGACATGATCACC+GGG | + | tig0032353:9876-9895 | None:intergenic | 45.0% | |
| GTAGGTGTAGACATGATCAC+CGG | + | tig0032353:9877-9896 | None:intergenic | 45.0% | |
| AGCTTCACCGTGATGAGAAT+AGG | + | tig0032353:9913-9932 | None:intergenic | 45.0% | |
| GGGATAGGATAGGATAGGAT+AGG | - | tig0032353:10395-10414 | Msa1448960:CDS | 45.0% | |
| ACCTGATACCAATGCTATGC+AGG | - | tig0032353:11038-11057 | Msa1448960:intron | 45.0% | |
| ! | ATGCAGGCATTTTTGTTGGG+GGG | - | tig0032353:11054-11073 | Msa1448960:intron | 45.0% |
| AATCAGGAAAGGTGGGACAA+GGG | + | tig0032353:11163-11182 | None:intergenic | 45.0% | |
| AACCCACAATCAGGAAAGGT+GGG | + | tig0032353:11170-11189 | None:intergenic | 45.0% | |
| ! | CACCAGCAGTTTTTCTTACC+AGG | - | tig0032353:11276-11295 | Msa1448960:intron | 45.0% |
| ! | ATAACAGTTTCAGGTGGGTC+GGG | + | tig0032353:11332-11351 | None:intergenic | 45.0% |
| ! | GATAACAGTTTCAGGTGGGT+CGG | + | tig0032353:11333-11352 | None:intergenic | 45.0% |
| CGATGGATAACAGTTTCAGG+TGG | + | tig0032353:11338-11357 | None:intergenic | 45.0% | |
| GCTCGATGGATAACAGTTTC+AGG | + | tig0032353:11341-11360 | None:intergenic | 45.0% | |
| AAGCAAGGAGTTGGAAGAAG+TGG | - | tig0032353:11461-11480 | Msa1448960:intron | 45.0% | |
| CTCGGCATTAACAACTTGAG+AGG | + | tig0032353:11536-11555 | None:intergenic | 45.0% | |
| TTGTTAATGCCGAGTCCTGT+TGG | - | tig0032353:11542-11561 | Msa1448960:intron | 45.0% | |
| AGAAGTGATGTGGTCAAGGT+TGG | - | tig0032353:11626-11645 | Msa1448960:intron | 45.0% | |
| GAAGTGATGTGGTCAAGGTT+GGG | - | tig0032353:11627-11646 | Msa1448960:intron | 45.0% | |
| AAGTGATGTGGTCAAGGTTG+GGG | - | tig0032353:11628-11647 | Msa1448960:intron | 45.0% | |
| AGAAGACTTGGCTGTGAACT+TGG | - | tig0032353:11652-11671 | Msa1448960:intron | 45.0% | |
| GAAGACTTGGCTGTGAACTT+GGG | - | tig0032353:11653-11672 | Msa1448960:intron | 45.0% | |
| ATCTGCACAGCAAAGTGGTT+CGG | + | tig0032353:12069-12088 | None:intergenic | 45.0% | |
| TTCTCATCTGCACAGCAAAG+TGG | + | tig0032353:12074-12093 | None:intergenic | 45.0% | |
| !! | GTGGAGTGGACTAAGGTAAG+AGG | - | tig0032353:9742-9761 | Msa1448960:three_prime_UTR | 50.0% |
| GAGAGACACGACATCAAACC+CGG | - | tig0032353:9855-9874 | Msa1448960:three_prime_UTR | 50.0% | |
| ! | GTCTTGCGTCGGTCAGAATA+AGG | + | tig0032353:10254-10273 | None:intergenic | 50.0% |
| AAATGTTGGGGGTCTTGCGT+CGG | + | tig0032353:10265-10284 | None:intergenic | 50.0% | |
| GGAAAACAACTGCACTGGAC+TGG | - | tig0032353:10301-10320 | Msa1448960:CDS | 50.0% | |
| !! | GCCTGCATAGCATTGGTATC+AGG | + | tig0032353:11042-11061 | None:intergenic | 50.0% |
| ! | CATTTTTGTTGGGGGGAGCA+AGG | - | tig0032353:11061-11080 | Msa1448960:intron | 50.0% |
| ATCAGGAAAGGTGGGACAAG+GGG | + | tig0032353:11162-11181 | None:intergenic | 50.0% | |
| CAATCAGGAAAGGTGGGACA+AGG | + | tig0032353:11164-11183 | None:intergenic | 50.0% | |
| TGTCCCACCTTTCCTGATTG+TGG | - | tig0032353:11164-11183 | Msa1448960:intron | 50.0% | |
| GTCCCACCTTTCCTGATTGT+GGG | - | tig0032353:11165-11184 | Msa1448960:intron | 50.0% | |
| GAACCCACAATCAGGAAAGG+TGG | + | tig0032353:11171-11190 | None:intergenic | 50.0% | |
| CCTGAACCCACAATCAGGAA+AGG | + | tig0032353:11174-11193 | None:intergenic | 50.0% | |
| CCTTTCCTGATTGTGGGTTC+AGG | - | tig0032353:11171-11190 | Msa1448960:intron | 50.0% | |
| AATGCCGAGTCCTGTTGGTA+TGG | - | tig0032353:11547-11566 | Msa1448960:intron | 50.0% | |
| GTAGCCATACCAACAGGACT+CGG | + | tig0032353:11554-11573 | None:intergenic | 50.0% | |
| GAGTCCTGTTGGTATGGCTA+CGG | - | tig0032353:11553-11572 | Msa1448960:intron | 50.0% | |
| GTTACCGTAGCCATACCAAC+AGG | + | tig0032353:11560-11579 | None:intergenic | 50.0% | |
| CAAGGTTGGGGTAGAAGACT+TGG | - | tig0032353:11640-11659 | Msa1448960:intron | 50.0% | |
| ACTTGGCTGTGAACTTGGGA+TGG | - | tig0032353:11657-11676 | Msa1448960:intron | 50.0% | |
| ! | ATGGACTTGTTCCGATGAGG+AGG | - | tig0032353:11676-11695 | Msa1448960:intron | 50.0% |
| TCCAACTACCTCCTCCTCAT+CGG | + | tig0032353:11690-11709 | None:intergenic | 50.0% | |
| AGACAGACAAACGGTGGGTG+TGG | - | tig0032353:9713-9732 | Msa1448960:three_prime_UTR | 55.0% | |
| GACAGACAAACGGTGGGTGT+GGG | - | tig0032353:9714-9733 | Msa1448960:three_prime_UTR | 55.0% | |
| ACAGACAAACGGTGGGTGTG+GGG | - | tig0032353:9715-9734 | Msa1448960:three_prime_UTR | 55.0% | |
| GGAGTGAGTGTGTGTCTGTC+TGG | - | tig0032353:9763-9782 | Msa1448960:three_prime_UTR | 55.0% | |
| GGTTGCCTGAACCCACAATC+AGG | + | tig0032353:11179-11198 | None:intergenic | 55.0% | |
| GGGTTCAGGCAACCGAATAG+TGG | - | tig0032353:11185-11204 | Msa1448960:intron | 55.0% | |
| GGTATGGCTACGGTAACAGC+AGG | - | tig0032353:11563-11582 | Msa1448960:intron | 55.0% | |
| ! | GGGATGGACTTGTTCCGATG+AGG | - | tig0032353:11673-11692 | Msa1448960:intron | 55.0% |
| ! | GACTTGTTCCGATGAGGAGG+AGG | - | tig0032353:11679-11698 | Msa1448960:intron | 55.0% |
| TCCGATGAGGAGGAGGTAGT+TGG | - | tig0032353:11686-11705 | Msa1448960:intron | 55.0% | |
| GAGGAGGAGGTAGTTGGAGA+TGG | - | tig0032353:11692-11711 | Msa1448960:intron | 55.0% | |
| !! | GGGTGGAGTGGAGTGGACTA+AGG | - | tig0032353:9735-9754 | Msa1448960:three_prime_UTR | 60.0% |
| !! | GTGGGACAAGGGGTTGGTGT+TGG | + | tig0032353:11152-11171 | None:intergenic | 60.0% |
| GGAAAGGTGGGACAAGGGGT+TGG | + | tig0032353:11158-11177 | None:intergenic | 60.0% | |
| GCACGTGCCACCTCTTATCC+TGG | + | tig0032353:11297-11316 | None:intergenic | 60.0% | |
| GACAAACGGTGGGTGTGGGG+TGG | - | tig0032353:9718-9737 | Msa1448960:three_prime_UTR | 65.0% | |
| ACGGTGGGTGTGGGGTGGAG+TGG | - | tig0032353:9723-9742 | Msa1448960:three_prime_UTR | 70.0% | |
| GGGTGTGGGGTGGAGTGGAG+TGG | - | tig0032353:9728-9747 | Msa1448960:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0032353 | gene | 9657 | 12131 | 9657 | ID=Msa1448960;Name=Msa1448960 |
| tig0032353 | mRNA | 9657 | 12131 | 9657 | ID=Msa1448960-mRNA-1;Parent=Msa1448960;Name=Msa1448960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=174|1|1|1|0|0.5|2|389|258 |
| tig0032353 | exon | 9657 | 10728 | 9657 | ID=Msa1448960-mRNA-1:exon:16714;Parent=Msa1448960-mRNA-1 |
| tig0032353 | exon | 11864 | 12131 | 11864 | ID=Msa1448960-mRNA-1:exon:16713;Parent=Msa1448960-mRNA-1 |
| tig0032353 | five_prime_UTR | 11958 | 12131 | 11958 | ID=Msa1448960-mRNA-1:five_prime_utr;Parent=Msa1448960-mRNA-1 |
| tig0032353 | CDS | 11864 | 11957 | 11864 | ID=Msa1448960-mRNA-1:cds;Parent=Msa1448960-mRNA-1 |
| tig0032353 | CDS | 10046 | 10728 | 10046 | ID=Msa1448960-mRNA-1:cds;Parent=Msa1448960-mRNA-1 |
| tig0032353 | three_prime_UTR | 9657 | 10045 | 9657 | ID=Msa1448960-mRNA-1:three_prime_utr;Parent=Msa1448960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
