Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711010 | XP_003610622.1 | 98.225 | 338 | 6 | 0 | 3 | 340 | 7 | 344 | 0.0 | 698 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711010 | sp|Q9LJN8|BUB31_ARATH | 84.412 | 340 | 53 | 0 | 1 | 340 | 1 | 340 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711010 | G7K0X2 | 98.225 | 338 | 6 | 0 | 3 | 340 | 7 | 344 | 0.0 | 698 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032460 | Msa0711010 | 0.800285 | 1.548043e-48 | -8.615850e-47 |
| Msa0035380 | Msa0711010 | 0.813205 | 2.880206e-51 | -8.615850e-47 |
| Msa0056180 | Msa0711010 | 0.800580 | 1.348260e-48 | -8.615850e-47 |
| Msa0067060 | Msa0711010 | 0.817749 | 2.805534e-52 | -8.615850e-47 |
| Msa0115550 | Msa0711010 | 0.805038 | 1.618589e-49 | -8.615850e-47 |
| Msa0606100 | Msa0711010 | 0.807844 | 4.145403e-50 | -8.615850e-47 |
| Msa0612520 | Msa0711010 | 0.800350 | 1.502189e-48 | -8.615850e-47 |
| Msa0619710 | Msa0711010 | 0.811134 | 8.148294e-51 | -8.615850e-47 |
| Msa0625340 | Msa0711010 | 0.825423 | 4.727072e-54 | -8.615850e-47 |
| Msa0625620 | Msa0711010 | 0.813316 | 2.722828e-51 | -8.615850e-47 |
| Msa0630660 | Msa0711010 | 0.802406 | 5.695537e-49 | -8.615850e-47 |
| Msa0647050 | Msa0711010 | 0.806988 | 6.295455e-50 | -8.615850e-47 |
| Msa0659150 | Msa0711010 | 0.804871 | 1.754474e-49 | -8.615850e-47 |
| Msa0668900 | Msa0711010 | 0.812179 | 4.828207e-51 | -8.615850e-47 |
| Msa0687090 | Msa0711010 | 0.827415 | 1.584266e-54 | -8.615850e-47 |
| Msa0698730 | Msa0711010 | 0.813249 | 2.817033e-51 | -8.615850e-47 |
| Msa0706150 | Msa0711010 | 0.800351 | 1.501266e-48 | -8.615850e-47 |
| Msa0711010 | Msa0718040 | 0.835371 | 1.744359e-56 | -8.615850e-47 |
| Msa0711010 | Msa0740710 | 0.821597 | 3.709760e-53 | -8.615850e-47 |
| Msa0711010 | Msa0749190 | 0.800314 | 1.527380e-48 | -8.615850e-47 |
| Msa0711010 | Msa0752230 | 0.897415 | 1.438128e-76 | -8.615850e-47 |
| Msa0711010 | Msa0807690 | 0.802005 | 6.889250e-49 | -8.615850e-47 |
| Msa0711010 | Msa0901150 | 0.823967 | 1.041259e-53 | -8.615850e-47 |
| Msa0711010 | Msa0909760 | 0.850976 | 1.198208e-60 | -8.615850e-47 |
| Msa0711010 | Msa0966710 | 0.815338 | 9.731201e-52 | -8.615850e-47 |
| Msa0711010 | Msa1000970 | 0.807579 | 4.717389e-50 | -8.615850e-47 |
| Msa0711010 | Msa1033920 | 0.808593 | 2.869648e-50 | -8.615850e-47 |
| Msa0711010 | Msa1060900 | 0.804769 | 1.842886e-49 | -8.615850e-47 |
| Msa0711010 | Msa1078880 | 0.806769 | 7.003321e-50 | -8.615850e-47 |
| Msa0711010 | Msa1078970 | 0.813076 | 3.073259e-51 | -8.615850e-47 |
| Msa0711010 | Msa1082380 | 0.800647 | 1.306247e-48 | -8.615850e-47 |
| Msa0711010 | Msa1090140 | 0.801286 | 9.674840e-49 | -8.615850e-47 |
| Msa0711010 | Msa1116660 | 0.836201 | 1.074835e-56 | -8.615850e-47 |
| Msa0711010 | Msa1116740 | 0.808362 | 3.215295e-50 | -8.615850e-47 |
| Msa0711010 | Msa1162880 | 0.832642 | 8.412957e-56 | -8.615850e-47 |
| Msa0711010 | Msa1169190 | 0.807412 | 5.120208e-50 | -8.615850e-47 |
| Msa0711010 | Msa1212700 | 0.810241 | 1.270923e-50 | -8.615850e-47 |
| Msa0711010 | Msa1212920 | 0.800280 | 1.551765e-48 | -8.615850e-47 |
| Msa0711010 | Msa1215690 | 0.803642 | 3.161711e-49 | -8.615850e-47 |
| Msa0711010 | Msa1254540 | 0.801795 | 7.608552e-49 | -8.615850e-47 |
| Msa0711010 | Msa1263780 | 0.803694 | 3.085141e-49 | -8.615850e-47 |
| Msa0711010 | Msa1282260 | 0.845869 | 3.102868e-59 | -8.615850e-47 |
| Msa0711010 | Msa1299980 | 0.800663 | 1.296626e-48 | -8.615850e-47 |
| Msa0711010 | Msa1332370 | 0.806703 | 7.230732e-50 | -8.615850e-47 |
| Msa0711010 | Msa1333830 | 0.808739 | 2.671480e-50 | -8.615850e-47 |
| Msa0711010 | Msa1342810 | 0.803189 | 3.924855e-49 | -8.615850e-47 |
| Msa0711010 | Msa1383310 | 0.840972 | 6.298632e-58 | -8.615850e-47 |
| Msa0711010 | Msa1406720 | 0.804265 | 2.347229e-49 | -8.615850e-47 |
| Msa0711010 | Msa1434640 | 0.817681 | 2.907267e-52 | -8.615850e-47 |
| Msa0711010 | Msa1443720 | 0.911318 | 6.965962e-83 | -8.615850e-47 |
| Msa0141640 | Msa0711010 | 0.833617 | 4.812896e-56 | -8.615850e-47 |
| Msa0154620 | Msa0711010 | 0.818286 | 2.122217e-52 | -8.615850e-47 |
| Msa0156050 | Msa0711010 | 0.806247 | 9.026240e-50 | -8.615850e-47 |
| Msa0166170 | Msa0711010 | 0.801933 | 7.126427e-49 | -8.615850e-47 |
| Msa0176060 | Msa0711010 | 0.801474 | 8.852172e-49 | -8.615850e-47 |
| Msa0185960 | Msa0711010 | 0.802320 | 5.931936e-49 | -8.615850e-47 |
| Msa0218020 | Msa0711010 | 0.834092 | 3.660285e-56 | -8.615850e-47 |
| Msa0373170 | Msa0711010 | 0.803065 | 4.164614e-49 | -8.615850e-47 |
| Msa0381730 | Msa0711010 | 0.836938 | 6.977061e-57 | -8.615850e-47 |
| Msa0382740 | Msa0711010 | 0.840253 | 9.721803e-58 | -8.615850e-47 |
| Msa0382770 | Msa0711010 | 0.841336 | 5.055712e-58 | -8.615850e-47 |
| Msa0412130 | Msa0711010 | 0.802691 | 4.976085e-49 | -8.615850e-47 |
| Msa0420670 | Msa0711010 | 0.813678 | 2.266650e-51 | -8.615850e-47 |
| Msa0422050 | Msa0711010 | 0.824405 | 8.215945e-54 | -8.615850e-47 |
| Msa0431200 | Msa0711010 | 0.832123 | 1.131456e-55 | -8.615850e-47 |
| Msa0432030 | Msa0711010 | 0.804977 | 1.667206e-49 | -8.615850e-47 |
| Msa0466520 | Msa0711010 | 0.804085 | 2.558126e-49 | -8.615850e-47 |
| Msa0467690 | Msa0711010 | 0.804530 | 2.067197e-49 | -8.615850e-47 |
| Msa0476280 | Msa0711010 | 0.826730 | 2.310652e-54 | -8.615850e-47 |
| Msa0507920 | Msa0711010 | 0.808781 | 2.616645e-50 | -8.615850e-47 |
| Msa0512530 | Msa0711010 | 0.816990 | 4.159559e-52 | -8.615850e-47 |
| Msa0520260 | Msa0711010 | 0.839796 | 1.278902e-57 | -8.615850e-47 |
| Msa0520870 | Msa0711010 | 0.815268 | 1.008385e-51 | -8.615850e-47 |
| Msa0524800 | Msa0711010 | 0.839041 | 2.008999e-57 | -8.615850e-47 |
| Msa0525000 | Msa0711010 | 0.842847 | 2.013065e-58 | -8.615850e-47 |
| Msa0534100 | Msa0711010 | 0.815261 | 1.012396e-51 | -8.615850e-47 |
| Msa0537990 | Msa0711010 | 0.815785 | 7.738067e-52 | -8.615850e-47 |
| Msa0561560 | Msa0711010 | 0.828948 | 6.766131e-55 | -8.615850e-47 |
| Msa0563940 | Msa0711010 | 0.820295 | 7.395292e-53 | -8.615850e-47 |
| Msa0570010 | Msa0711010 | 0.804822 | 1.796106e-49 | -8.615850e-47 |
| Msa0580200 | Msa0711010 | 0.800357 | 1.496835e-48 | -8.615850e-47 |
| Msa0580990 | Msa0711010 | 0.831677 | 1.457335e-55 | -8.615850e-47 |
| Msa0585340 | Msa0711010 | 0.833055 | 6.643820e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711010 | MtrunA17_Chr5g0393711 | 98.225 | 338 | 6 | 0 | 3 | 340 | 7 | 344 | 0.0 | 698 |
| Msa0711010 | MtrunA17_Chr5g0418221 | 37.658 | 316 | 189 | 5 | 15 | 328 | 16 | 325 | 1.08e-67 | 215 |
| Msa0711010 | MtrunA17_Chr2g0278901 | 34.226 | 336 | 197 | 7 | 11 | 333 | 20 | 344 | 8.94e-64 | 206 |
| Msa0711010 | MtrunA17_Chr8g0367631 | 34.524 | 336 | 197 | 7 | 11 | 334 | 18 | 342 | 3.62e-63 | 204 |
| Msa0711010 | MtrunA17_Chr1g0198231 | 32.012 | 328 | 192 | 7 | 7 | 314 | 12 | 328 | 2.00e-48 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711010 | AT3G19590.1 | 84.412 | 340 | 53 | 0 | 1 | 340 | 1 | 340 | 0.0 | 613 |
| Msa0711010 | AT1G49910.1 | 84.821 | 336 | 51 | 0 | 3 | 338 | 2 | 337 | 0.0 | 607 |
| Msa0711010 | AT1G80670.1 | 35.821 | 335 | 192 | 8 | 11 | 333 | 19 | 342 | 1.51e-65 | 211 |
| Msa0711010 | AT1G69400.1 | 36.013 | 311 | 192 | 4 | 11 | 320 | 7 | 311 | 2.21e-63 | 204 |
| Msa0711010 | AT1G69400.2 | 36.626 | 243 | 148 | 3 | 11 | 253 | 7 | 243 | 1.93e-45 | 156 |
Find 118 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATATGCTTCTCGAAATT+TGG | 0.116715 | 5_1:-2886522 | Msa0711010:three_prime_UTR |
| TACCGGTAAGGAGGATATTT+TGG | 0.159397 | 5_1:-2890006 | Msa0711010:CDS |
| TTGGGAAGGGCTTTGGGTTT+TGG | 0.164675 | 5_1:+2886807 | None:intergenic |
| TGCAGGATTGGGAAGGGCTT+TGG | 0.197252 | 5_1:+2886800 | None:intergenic |
| TAACAGAGATACCTGTTCTT+AGG | 0.220195 | 5_1:-2886491 | Msa0711010:three_prime_UTR |
| ATACATGCTAGTTAACATTT+TGG | 0.252540 | 5_1:-2886639 | Msa0711010:three_prime_UTR |
| GTGGAATGCCATGGCATTTA+CGG | 0.284148 | 5_1:+2888221 | None:intergenic |
| ATTTCCCTCTTTGTTGTGTT+TGG | 0.287524 | 5_1:-2890404 | Msa0711010:five_prime_UTR |
| GTGTACTTTGTTCACATCTT+TGG | 0.299055 | 5_1:-2886713 | Msa0711010:three_prime_UTR |
| CTACCTATCTAATCTAATCT+AGG | 0.306261 | 5_1:+2890377 | None:intergenic |
| GCAGGATTGGGAAGGGCTTT+GGG | 0.318991 | 5_1:+2886801 | None:intergenic |
| TGCTTCCATGACGACTCTTC+TGG | 0.326043 | 5_1:-2890146 | Msa0711010:CDS |
| TACAGTTTACCTGTTCCATT+TGG | 0.330327 | 5_1:+2888749 | None:intergenic |
| GAAGATTCCCTTCGTTGTTC+AGG | 0.332221 | 5_1:+2888806 | None:intergenic |
| GTTTACTCTCTATCTCTTGT+TGG | 0.372907 | 5_1:-2888896 | Msa0711010:CDS |
| ATCATCTTCTCGTCTCCTCT+TGG | 0.379669 | 5_1:-2890250 | Msa0711010:CDS |
| TCCCAAAATATCCTCCTTAC+CGG | 0.391787 | 5_1:+2890004 | None:intergenic |
| GTTGTGAATACTTACGGTTT+AGG | 0.392170 | 5_1:+2887044 | None:intergenic |
| TGGAATGCCATGGCATTTAC+GGG | 0.398545 | 5_1:+2888222 | None:intergenic |
| GATAGAGAGTAAACACGTTC+AGG | 0.399955 | 5_1:+2888905 | None:intergenic |
| AGTGAATCACGCTGCAGGAT+TGG | 0.403543 | 5_1:+2886788 | None:intergenic |
| CGTGAAGGAACTCACCTCTA+AGG | 0.414200 | 5_1:+2890189 | None:intergenic |
| GTGAATCACGCTGCAGGATT+GGG | 0.415119 | 5_1:+2886789 | None:intergenic |
| GCAACCGCTGATGTCCTTAG+AGG | 0.424329 | 5_1:-2890203 | Msa0711010:CDS |
| TGGGTAGCAGCGTACACATC+TGG | 0.426524 | 5_1:+2888769 | None:intergenic |
| CGCTGCTACCCAAATGGAAC+AGG | 0.433713 | 5_1:-2888758 | Msa0711010:intron |
| TCTTGTCCACTTGCACCTCT+AGG | 0.434348 | 5_1:+2888956 | None:intergenic |
| TGACCGTCTGACAGTGTTAT+CGG | 0.437288 | 5_1:+2890109 | None:intergenic |
| GGGATAAAACCATAAAATGT+TGG | 0.442375 | 5_1:-2888982 | Msa0711010:CDS |
| GCAATTGATCACTGGAAGTT+GGG | 0.444451 | 5_1:-2889002 | Msa0711010:CDS |
| TCATCTTCTCGTCTCCTCTT+GGG | 0.446872 | 5_1:-2890249 | Msa0711010:CDS |
| GGCAATTGATCACTGGAAGT+TGG | 0.450395 | 5_1:-2889003 | Msa0711010:CDS |
| GGATAAAACCATAAAATGTT+GGG | 0.457603 | 5_1:-2888981 | Msa0711010:CDS |
| TGACCTATCTGAGGCTAGCC+AGG | 0.461002 | 5_1:-2888413 | Msa0711010:CDS |
| ACGGAGTAGTCCCTAAGAAC+AGG | 0.467630 | 5_1:+2886480 | None:intergenic |
| CTCTATCTCTTGTTGGACAT+CGG | 0.475750 | 5_1:-2888889 | Msa0711010:CDS |
| ACAACAAATATTTACAATGA+AGG | 0.476560 | 5_1:+2886589 | None:intergenic |
| AACAGAGATACCTGTTCTTA+GGG | 0.477008 | 5_1:-2886490 | Msa0711010:three_prime_UTR |
| AAAATCAATACTTCTTTGCC+TGG | 0.480508 | 5_1:+2888395 | None:intergenic |
| GGACAAGAGCGTACTCTAGT+TGG | 0.480881 | 5_1:-2888941 | Msa0711010:CDS |
| ACAGTTTACCTGTTCCATTT+GGG | 0.482139 | 5_1:+2888750 | None:intergenic |
| TGTGTACGCTGCTACCCAAA+TGG | 0.483373 | 5_1:-2888764 | Msa0711010:CDS |
| TCACAACATTAGTCTACCTT+GGG | 0.483597 | 5_1:+2886681 | None:intergenic |
| CTTAGAGGTGAGTTCCTTCA+CGG | 0.487170 | 5_1:-2890188 | Msa0711010:CDS |
| GAGAGTGCAGCAATGCTACT+TGG | 0.487185 | 5_1:+2887125 | None:intergenic |
| AATCCTGCAGCGTGATTCAC+TGG | 0.488528 | 5_1:-2886786 | Msa0711010:exon |
| TTCACAACATTAGTCTACCT+TGG | 0.489834 | 5_1:+2886680 | None:intergenic |
| TTGCCTGGCTAGCCTCAGAT+AGG | 0.496802 | 5_1:+2888410 | None:intergenic |
| ATGTTCGAGATTCCGTCTGA+TGG | 0.502489 | 5_1:+2890293 | None:intergenic |
| GACAAGAGCGTACTCTAGTT+GGG | 0.502955 | 5_1:-2888940 | Msa0711010:CDS |
| TGGAAGCAACAATCAAGAAC+AGG | 0.503586 | 5_1:+2890161 | None:intergenic |
| CTTGTCCACTTGCACCTCTA+GGG | 0.505930 | 5_1:+2888957 | None:intergenic |
| CAAGAACAGGTCCGCCGTGA+AGG | 0.511608 | 5_1:+2890174 | None:intergenic |
| TCTCGACCGGCGGATACCAC+TGG | 0.514276 | 5_1:+2890329 | None:intergenic |
| TGTTGAAGGGCGGGTTGCAA+TGG | 0.517015 | 5_1:-2888443 | Msa0711010:CDS |
| GAGTACTCAACACAACGAAC+AGG | 0.517820 | 5_1:+2889969 | None:intergenic |
| TATGCTCTTAGTTCTGTTGA+AGG | 0.518025 | 5_1:-2888457 | Msa0711010:CDS |
| GAACCAGTGAATCACGCTGC+AGG | 0.520926 | 5_1:+2886783 | None:intergenic |
| GCACTCTCGTTTAGCAGAGA+TGG | 0.522542 | 5_1:-2887110 | Msa0711010:CDS |
| TCTTAGTTCTGTTGAAGGGC+GGG | 0.525855 | 5_1:-2888452 | Msa0711010:CDS |
| AGACGAGAAGATGATCACTA+TGG | 0.526448 | 5_1:+2890258 | None:intergenic |
| CGTAGATAGCATCTTGGTCA+TGG | 0.526895 | 5_1:+2886859 | None:intergenic |
| TGTCATAGAAAATCTGAAGC+TGG | 0.530953 | 5_1:-2888261 | Msa0711010:CDS |
| TAGAAAATCTGAAGCTGGAA+GGG | 0.537950 | 5_1:-2888256 | Msa0711010:CDS |
| CTCTTAGTTCTGTTGAAGGG+CGG | 0.540304 | 5_1:-2888453 | Msa0711010:CDS |
| CACGCGACCCAAACAAACAC+GGG | 0.540738 | 5_1:+2890450 | None:intergenic |
| GTTGAGTACTCCTACGCCGC+AGG | 0.544652 | 5_1:-2889957 | Msa0711010:intron |
| CTGAAAACACTTACATGGGG+TGG | 0.550167 | 5_1:+2888202 | None:intergenic |
| CGGCTTGTAGTAGCAACAGC+TGG | 0.551056 | 5_1:-2888869 | Msa0711010:CDS |
| ATAGAAAATCTGAAGCTGGA+AGG | 0.551824 | 5_1:-2888257 | Msa0711010:CDS |
| ATTATAGGGCAATTGATCAC+TGG | 0.555294 | 5_1:-2889010 | Msa0711010:intron |
| CAACAAATATTTACAATGAA+GGG | 0.557765 | 5_1:+2886590 | None:intergenic |
| AACCCTAGATTAGATTAGAT+AGG | 0.559459 | 5_1:-2890380 | Msa0711010:five_prime_UTR |
| TACCTATCTAATCTAATCTA+GGG | 0.563320 | 5_1:+2890378 | None:intergenic |
| TTGCTGTGTTGTAAAGACCC+AGG | 0.563747 | 5_1:-2886567 | Msa0711010:three_prime_UTR |
| AAGTAAGTAACCTGCGGCGT+AGG | 0.571654 | 5_1:+2889947 | None:intergenic |
| TCGAGATTCCGTCTGATGGA+GGG | 0.573589 | 5_1:+2890297 | None:intergenic |
| TGCGAACGTAGATAGCATCT+TGG | 0.573621 | 5_1:+2886853 | None:intergenic |
| ATGCTCTTAGTTCTGTTGAA+GGG | 0.579584 | 5_1:-2888456 | Msa0711010:CDS |
| TTCGAGATTCCGTCTGATGG+AGG | 0.580544 | 5_1:+2890296 | None:intergenic |
| ATCACGCTGCAGGATTGGGA+AGG | 0.587120 | 5_1:+2886793 | None:intergenic |
| CGTCTATCCCGTAAATGCCA+TGG | 0.598810 | 5_1:-2888229 | Msa0711010:CDS |
| TGTAACTTGATGCAACAGCT+AGG | 0.599050 | 5_1:+2887081 | None:intergenic |
| ACAGGTATCTCTGTTAGAGA+TGG | 0.601076 | 5_1:+2886498 | None:intergenic |
| GTCTTGTCCTGAACAACGAA+GGG | 0.604426 | 5_1:-2888813 | Msa0711010:CDS |
| ACGTTAATGTTTATGACATG+AGG | 0.606508 | 5_1:-2888841 | Msa0711010:CDS |
| TGAAACCAGAAGAGTCGTCA+TGG | 0.608860 | 5_1:+2890141 | None:intergenic |
| GGAATTCTTTGACCTATCTG+AGG | 0.609008 | 5_1:-2888422 | Msa0711010:CDS |
| TGCTGTGTTGTAAAGACCCA+GGG | 0.609828 | 5_1:-2886566 | Msa0711010:three_prime_UTR |
| TCACGCTGCAGGATTGGGAA+GGG | 0.611093 | 5_1:+2886794 | None:intergenic |
| TCTGACAGTGTTATCGGCGG+AGG | 0.614498 | 5_1:+2890115 | None:intergenic |
| ACACGCGACCCAAACAAACA+CGG | 0.615363 | 5_1:+2890449 | None:intergenic |
| GTTTCCAAACACAACAAAGA+GGG | 0.617826 | 5_1:+2890400 | None:intergenic |
| AGATATGGTACATTTGCCAC+AGG | 0.618381 | 5_1:-2887306 | Msa0711010:CDS |
| TTACATGGGGTGGAATGCCA+TGG | 0.620444 | 5_1:+2888212 | None:intergenic |
| TTTGCCACAGGAGGTTGTGA+CGG | 0.624438 | 5_1:-2887294 | Msa0711010:CDS |
| ATAGTAGCAGTAGTCACCCT+GGG | 0.626060 | 5_1:+2886550 | None:intergenic |
| TGTCTTGTCCTGAACAACGA+AGG | 0.627385 | 5_1:-2888814 | Msa0711010:CDS |
| TATGGTACATTTGCCACAGG+AGG | 0.632539 | 5_1:-2887303 | Msa0711010:CDS |
| GCAACACCAGTGGTATCCGC+CGG | 0.635006 | 5_1:-2890335 | Msa0711010:CDS |
| TTAACAAGCCCTCCATCAGA+CGG | 0.636619 | 5_1:-2890305 | Msa0711010:CDS |
| AATAGTAGCAGTAGTCACCC+TGG | 0.638455 | 5_1:+2886549 | None:intergenic |
| TGGGACCCTAGAGGTGCAAG+TGG | 0.639134 | 5_1:-2888962 | Msa0711010:CDS |
| AGGGCTTGTTAACTCTCGAC+CGG | 0.642314 | 5_1:+2890316 | None:intergenic |
| GGTTTCCAAACACAACAAAG+AGG | 0.648548 | 5_1:+2890399 | None:intergenic |
| AAAACCGTCACAACCTCCTG+TGG | 0.649987 | 5_1:+2887290 | None:intergenic |
| CTCAACAATGGCAACACCAG+TGG | 0.659385 | 5_1:-2890345 | Msa0711010:exon |
| TCTTTGGTATGAACATCCCA+AGG | 0.659765 | 5_1:-2886697 | Msa0711010:three_prime_UTR |
| GGTTGCATCGTAAAGACGAA+CGG | 0.660585 | 5_1:+2890220 | None:intergenic |
| TAGTGAGTTCAACTCAACAA+TGG | 0.664816 | 5_1:-2890357 | Msa0711010:exon |
| GCTTGTTAACTCTCGACCGG+CGG | 0.671541 | 5_1:+2890319 | None:intergenic |
| AACTTGATGCAACAGCTAGG+AGG | 0.684112 | 5_1:+2887084 | None:intergenic |
| CCGCCGATAACACTGTCAGA+CGG | 0.721323 | 5_1:-2890112 | Msa0711010:intron |
| CCGTCTGACAGTGTTATCGG+CGG | 0.723525 | 5_1:+2890112 | None:intergenic |
| AGAGGTGAGTTCCTTCACGG+CGG | 0.725492 | 5_1:-2890185 | Msa0711010:CDS |
| ATAAAATGTTGGGACCCTAG+AGG | 0.729323 | 5_1:-2888971 | Msa0711010:CDS |
| ACGCGACCCAAACAAACACG+GGG | 0.732425 | 5_1:+2890451 | None:intergenic |
| CTCACCTCTAAGGACATCAG+CGG | 0.748654 | 5_1:+2890199 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTAAAAAAAAACTG+GGG | - | chr5_1:2887397-2887416 | Msa0711010:intron | 10.0% |
| !!! | TTAAAATTTAAAACAAATTG+TGG | - | chr5_1:2888865-2888884 | Msa0711010:CDS | 10.0% |
| !! | TTTGTAAGGAATAATAATTA+AGG | - | chr5_1:2887688-2887707 | Msa0711010:intron | 15.0% |
| !!! | TATTTGGTTTAGAAATTAAA+TGG | - | chr5_1:2889058-2889077 | Msa0711010:intron | 15.0% |
| !! | TAAGGAATCTTATTAATAAA+AGG | - | chr5_1:2889453-2889472 | Msa0711010:intron | 15.0% |
| !! | CTAATAAATTAGTGATAATT+GGG | + | chr5_1:2889578-2889597 | None:intergenic | 15.0% |
| !! | ACTAATAAATTAGTGATAAT+TGG | + | chr5_1:2889579-2889598 | None:intergenic | 15.0% |
| !!! | TATTTTTCAAAATTACTATC+AGG | + | chr5_1:2890231-2890250 | None:intergenic | 15.0% |
| !! | ACTAACAATAACAATAACAA+TGG | + | chr5_1:2886929-2886948 | None:intergenic | 20.0% |
| !! | TCTAAATTAACACATATAAG+TGG | + | chr5_1:2887111-2887130 | None:intergenic | 20.0% |
| !! | AGTTACAAAGAAAATTCAAA+TGG | - | chr5_1:2887561-2887580 | Msa0711010:intron | 20.0% |
| !! | GTTACAAAGAAAATTCAAAT+GGG | - | chr5_1:2887562-2887581 | Msa0711010:intron | 20.0% |
| !! | ATATTATTATTTCCGTTCAA+AGG | - | chr5_1:2887857-2887876 | Msa0711010:intron | 20.0% |
| !!! | TTTAACTTATCCATCATTAT+AGG | - | chr5_1:2887964-2887983 | Msa0711010:intron | 20.0% |
| !! | TTAACTTATCCATCATTATA+GGG | - | chr5_1:2887965-2887984 | Msa0711010:intron | 20.0% |
| !!! | AAAAAACAACAATTTTGAAG+TGG | + | chr5_1:2888643-2888662 | None:intergenic | 20.0% |
| !! | TTATCAATAACATGTATGAA+AGG | + | chr5_1:2889031-2889050 | None:intergenic | 20.0% |
| !!! | TATTGATAATCATGACTATT+TGG | - | chr5_1:2889042-2889061 | Msa0711010:intron | 20.0% |
| !! | AATAAGATTCCTTATATTCA+AGG | + | chr5_1:2889447-2889466 | None:intergenic | 20.0% |
| !! | CAACAAATATTTACAATGAA+GGG | + | chr5_1:2890402-2890421 | None:intergenic | 20.0% |
| !! | ACAACAAATATTTACAATGA+AGG | + | chr5_1:2890403-2890422 | None:intergenic | 20.0% |
| ! | TACCTATCTAATCTAATCTA+GGG | + | chr5_1:2886614-2886633 | None:intergenic | 25.0% |
| ! | AATAACAATAACAATGGATC+TGG | + | chr5_1:2886923-2886942 | None:intergenic | 25.0% |
| ! | TTAGCAGTTTGAAAGAAAAA+AGG | + | chr5_1:2887088-2887107 | None:intergenic | 25.0% |
| ! | AGAATCAGAAAATATACTAG+TGG | + | chr5_1:2887247-2887266 | None:intergenic | 25.0% |
| !! | TGAGTTTTCAGTGTTAAAAA+GGG | + | chr5_1:2887331-2887350 | None:intergenic | 25.0% |
| !! | TTGAGTTTTCAGTGTTAAAA+AGG | + | chr5_1:2887332-2887351 | None:intergenic | 25.0% |
| !!! | TTTTAAAAAAAAACTGGGGA+AGG | - | chr5_1:2887401-2887420 | Msa0711010:intron | 25.0% |
| ! | TTTAAAAAAAAACTGGGGAA+GGG | - | chr5_1:2887402-2887421 | Msa0711010:intron | 25.0% |
| ! | GGATAAAACCATAAAATGTT+GGG | - | chr5_1:2888008-2888027 | Msa0711010:intron | 25.0% |
| !! | GGAATAATTTGCAAAACTTA+TGG | - | chr5_1:2888279-2888298 | Msa0711010:intron | 25.0% |
| ! | AATTTGCAAAACTTATGGTT+TGG | - | chr5_1:2888284-2888303 | Msa0711010:intron | 25.0% |
| !! | TTGAAATTTTCATCAAATGC+TGG | - | chr5_1:2888333-2888352 | Msa0711010:intron | 25.0% |
| !!! | AAAACAAATTGTGGTTTTAG+TGG | - | chr5_1:2888874-2888893 | Msa0711010:CDS | 25.0% |
| ! | AAATTAAATGGTTGCAAGTT+GGG | - | chr5_1:2889070-2889089 | Msa0711010:intron | 25.0% |
| ! | TAATTCTAACCATCCAATTT+CGG | + | chr5_1:2889327-2889346 | None:intergenic | 25.0% |
| ! | TAGAAAGAACAATGTATTCA+AGG | + | chr5_1:2889488-2889507 | None:intergenic | 25.0% |
| !! | ATACATGCTAGTTAACATTT+TGG | - | chr5_1:2890350-2890369 | Msa0711010:exon | 25.0% |
| !!! | GGGGTTTTTGTTTTTGTTTT+AGG | + | chr5_1:2886522-2886541 | None:intergenic | 30.0% |
| AACCCTAGATTAGATTAGAT+AGG | - | chr5_1:2886609-2886628 | Msa0711010:three_prime_UTR | 30.0% | |
| CTACCTATCTAATCTAATCT+AGG | + | chr5_1:2886615-2886634 | None:intergenic | 30.0% | |
| !! | TTGACTTGTAAGTAACTTCA+AGG | + | chr5_1:2887499-2887518 | None:intergenic | 30.0% |
| ! | AAAATCAGTTTTCGCTAATC+TGG | + | chr5_1:2887532-2887551 | None:intergenic | 30.0% |
| !!! | GGTTTTAAACTTGATTCTCA+AGG | + | chr5_1:2887771-2887790 | None:intergenic | 30.0% |
| ACCAACGATGATAACATATT+TGG | - | chr5_1:2887788-2887807 | Msa0711010:intron | 30.0% | |
| ACCAAATATGTTATCATCGT+TGG | + | chr5_1:2887792-2887811 | None:intergenic | 30.0% | |
| GAAGTTTGACTATTGACAAT+GGG | - | chr5_1:2887935-2887954 | Msa0711010:intron | 30.0% | |
| GGGATAAAACCATAAAATGT+TGG | - | chr5_1:2888007-2888026 | Msa0711010:intron | 30.0% | |
| ACGTTAATGTTTATGACATG+AGG | - | chr5_1:2888148-2888167 | Msa0711010:intron | 30.0% | |
| ! | GCACTATTATTGATTGAAAG+AGG | - | chr5_1:2888402-2888421 | Msa0711010:intron | 30.0% |
| ! | ATATCCTGCAAAAAGTATGT+GGG | + | chr5_1:2888515-2888534 | None:intergenic | 30.0% |
| AAAATCAATACTTCTTTGCC+TGG | + | chr5_1:2888597-2888616 | None:intergenic | 30.0% | |
| TTTAGCATGCTAGTGAATTA+AGG | + | chr5_1:2888840-2888859 | None:intergenic | 30.0% | |
| TATCAGCTATTTATGTTCTC+TGG | - | chr5_1:2888913-2888932 | Msa0711010:CDS | 30.0% | |
| ATCAGCTATTTATGTTCTCT+GGG | - | chr5_1:2888914-2888933 | Msa0711010:CDS | 30.0% | |
| AATTATCAGTGTCCATTCTT+TGG | + | chr5_1:2888941-2888960 | None:intergenic | 30.0% | |
| GAAATTAAATGGTTGCAAGT+TGG | - | chr5_1:2889069-2889088 | Msa0711010:intron | 30.0% | |
| !! | GTCATTTTCTAGTCGATTTT+TGG | + | chr5_1:2889158-2889177 | None:intergenic | 30.0% |
| AAATCGACTAGAAAATGACT+AGG | - | chr5_1:2889159-2889178 | Msa0711010:intron | 30.0% | |
| GAATGATACAAATCCTAGAA+TGG | + | chr5_1:2889262-2889281 | None:intergenic | 30.0% | |
| TATTACATTGTTGTACGAGT+GGG | + | chr5_1:2889366-2889385 | None:intergenic | 30.0% | |
| TCGTACAACAATGTAATAGT+TGG | - | chr5_1:2889368-2889387 | Msa0711010:intron | 30.0% | |
| TGCTAAACACCTTGAATATA+AGG | - | chr5_1:2889435-2889454 | Msa0711010:intron | 30.0% | |
| ! | AGTTAGTTGTGATTGATAGT+TGG | + | chr5_1:2889543-2889562 | None:intergenic | 30.0% |
| GAAAAATCTTCATGCAGATA+TGG | - | chr5_1:2889668-2889687 | Msa0711010:intron | 30.0% | |
| TAGAGATCAGATTCTTCTTA+TGG | - | chr5_1:2889791-2889810 | Msa0711010:intron | 30.0% | |
| TTGAATACTGCAAGGATAAA+TGG | + | chr5_1:2889839-2889858 | None:intergenic | 30.0% | |
| !! | TGGATATTTTGAATACTGCA+AGG | + | chr5_1:2889847-2889866 | None:intergenic | 30.0% |
| !! | ATCAAGTTACACTTTTGAAG+AGG | - | chr5_1:2889920-2889939 | Msa0711010:intron | 30.0% |
| !! | TCAAGTTACACTTTTGAAGA+GGG | - | chr5_1:2889921-2889940 | Msa0711010:intron | 30.0% |
| TTGATATGCTTCTCGAAATT+TGG | - | chr5_1:2890467-2890486 | Msa0711010:five_prime_UTR | 30.0% | |
| ! | ATTTCCCTCTTTGTTGTGTT+TGG | - | chr5_1:2886585-2886604 | Msa0711010:three_prime_UTR | 35.0% |
| GTTTCCAAACACAACAAAGA+GGG | + | chr5_1:2886592-2886611 | None:intergenic | 35.0% | |
| TAGTGAGTTCAACTCAACAA+TGG | - | chr5_1:2886632-2886651 | Msa0711010:three_prime_UTR | 35.0% | |
| GTAAGTAAGTAAGTAACCTG+CGG | + | chr5_1:2887051-2887070 | None:intergenic | 35.0% | |
| ! | GATATGTTTTACCAAGACAG+CGG | + | chr5_1:2887177-2887196 | None:intergenic | 35.0% |
| AGCTAGAAACTGCAATGAAT+AGG | + | chr5_1:2887305-2887324 | None:intergenic | 35.0% | |
| AATAGAGTTCAAATCTCCAC+GGG | + | chr5_1:2887476-2887495 | None:intergenic | 35.0% | |
| GAATAGAGTTCAAATCTCCA+CGG | + | chr5_1:2887477-2887496 | None:intergenic | 35.0% | |
| CTTACAAAGAATATCACACG+AGG | + | chr5_1:2887676-2887695 | None:intergenic | 35.0% | |
| CTCGTGTGATATTCTTTGTA+AGG | - | chr5_1:2887674-2887693 | Msa0711010:intron | 35.0% | |
| ! | TGATTCTCAAGGCACATTTT+AGG | + | chr5_1:2887760-2887779 | None:intergenic | 35.0% |
| AGAATGATGACTCCTTTGAA+CGG | + | chr5_1:2887872-2887891 | None:intergenic | 35.0% | |
| TGCAATTCTTGTCATTGTCA+TGG | + | chr5_1:2887903-2887922 | None:intergenic | 35.0% | |
| AAGAATTGCAGCTTATTTGC+TGG | - | chr5_1:2887913-2887932 | Msa0711010:intron | 35.0% | |
| GGAAGTTTGACTATTGACAA+TGG | - | chr5_1:2887934-2887953 | Msa0711010:intron | 35.0% | |
| GATCAATTGCCCTATAATGA+TGG | + | chr5_1:2887977-2887996 | None:intergenic | 35.0% | |
| ATTATAGGGCAATTGATCAC+TGG | - | chr5_1:2887979-2887998 | Msa0711010:intron | 35.0% | |
| GTTTACTCTCTATCTCTTGT+TGG | - | chr5_1:2888093-2888112 | Msa0711010:intron | 35.0% | |
| ACAGTTTACCTGTTCCATTT+GGG | + | chr5_1:2888242-2888261 | None:intergenic | 35.0% | |
| TACAGTTTACCTGTTCCATT+TGG | + | chr5_1:2888243-2888262 | None:intergenic | 35.0% | |
| ! | CTGTAGTGTATGTGTGATTT+TGG | - | chr5_1:2888258-2888277 | Msa0711010:CDS | 35.0% |
| !! | GTTGAGTTTCTTAGCTTTGA+TGG | - | chr5_1:2888447-2888466 | Msa0711010:CDS | 35.0% |
| TATGTGGGATATGAACATCA+AGG | + | chr5_1:2888500-2888519 | None:intergenic | 35.0% | |
| !! | ATATCCCACATACTTTTTGC+AGG | - | chr5_1:2888508-2888527 | Msa0711010:intron | 35.0% |
| ! | CATATCCTGCAAAAAGTATG+TGG | + | chr5_1:2888516-2888535 | None:intergenic | 35.0% |
| !! | TATGCTCTTAGTTCTGTTGA+AGG | - | chr5_1:2888532-2888551 | Msa0711010:intron | 35.0% |
| !! | ATGCTCTTAGTTCTGTTGAA+GGG | - | chr5_1:2888533-2888552 | Msa0711010:intron | 35.0% |
| GTAGAGTTTAGAAGCAAATG+AGG | + | chr5_1:2888691-2888710 | None:intergenic | 35.0% | |
| TTTGCTTCTAAACTCTACAC+AGG | - | chr5_1:2888693-2888712 | Msa0711010:intron | 35.0% | |
| ! | TGTCATAGAAAATCTGAAGC+TGG | - | chr5_1:2888728-2888747 | Msa0711010:intron | 35.0% |
| ! | ATAGAAAATCTGAAGCTGGA+AGG | - | chr5_1:2888732-2888751 | Msa0711010:intron | 35.0% |
| ! | TAGAAAATCTGAAGCTGGAA+GGG | - | chr5_1:2888733-2888752 | Msa0711010:intron | 35.0% |
| AACCTGAAAACACTTACATG+GGG | + | chr5_1:2888793-2888812 | None:intergenic | 35.0% | |
| GAACCTGAAAACACTTACAT+GGG | + | chr5_1:2888794-2888813 | None:intergenic | 35.0% | |
| AGAACCTGAAAACACTTACA+TGG | + | chr5_1:2888795-2888814 | None:intergenic | 35.0% | |
| ATTCACTAGCATGCTAAAGA+AGG | - | chr5_1:2888842-2888861 | Msa0711010:CDS | 35.0% | |
| GACACTGATAATTACCACAA+TGG | - | chr5_1:2888948-2888967 | Msa0711010:CDS | 35.0% | |
| CATCCTAACTGAATGTTGAT+AGG | - | chr5_1:2889105-2889124 | Msa0711010:intron | 35.0% | |
| GATCCTATCAACATTCAGTT+AGG | + | chr5_1:2889111-2889130 | None:intergenic | 35.0% | |
| GGAGATATTACGAATGTCAT+TGG | - | chr5_1:2889180-2889199 | Msa0711010:intron | 35.0% | |
| !! | AATCCTAGAATGGTACTGAT+AGG | + | chr5_1:2889252-2889271 | None:intergenic | 35.0% |
| TAATATCCCCATGTCATCTT+TGG | + | chr5_1:2889291-2889310 | None:intergenic | 35.0% | |
| CATGGGGATATTACACTTAA+TGG | - | chr5_1:2889298-2889317 | Msa0711010:intron | 35.0% | |
| CACTTAATGGTTTCCGAAAT+TGG | - | chr5_1:2889311-2889330 | Msa0711010:intron | 35.0% | |
| TAATGGTTTCCGAAATTGGA+TGG | - | chr5_1:2889315-2889334 | Msa0711010:intron | 35.0% | |
| CTATTACATTGTTGTACGAG+TGG | + | chr5_1:2889367-2889386 | None:intergenic | 35.0% | |
| TGGTGTAATAAGAACCAATC+TGG | - | chr5_1:2889388-2889407 | Msa0711010:intron | 35.0% | |
| GGTGTAATAAGAACCAATCT+GGG | - | chr5_1:2889389-2889408 | Msa0711010:intron | 35.0% | |
| GTGTAATAAGAACCAATCTG+GGG | - | chr5_1:2889390-2889409 | Msa0711010:intron | 35.0% | |
| TGTAATAAGAACCAATCTGG+GGG | - | chr5_1:2889391-2889410 | Msa0711010:intron | 35.0% | |
| AGCAGTATCAACATACTAAC+TGG | - | chr5_1:2889599-2889618 | Msa0711010:intron | 35.0% | |
| !!! | TGACGGTTTTGTTAACGTAT+GGG | - | chr5_1:2889712-2889731 | Msa0711010:intron | 35.0% |
| CTGATCTCTAAATTTACTCG+AGG | + | chr5_1:2889781-2889800 | None:intergenic | 35.0% | |
| GTTGTGAATACTTACGGTTT+AGG | + | chr5_1:2889948-2889967 | None:intergenic | 35.0% | |
| ATGGGAGTTGTGAATACTTA+CGG | + | chr5_1:2889954-2889973 | None:intergenic | 35.0% | |
| GTGTACTTTGTTCACATCTT+TGG | - | chr5_1:2890276-2890295 | Msa0711010:CDS | 35.0% | |
| ! | TCACAACATTAGTCTACCTT+GGG | + | chr5_1:2890311-2890330 | None:intergenic | 35.0% |
| ! | TTCACAACATTAGTCTACCT+TGG | + | chr5_1:2890312-2890331 | None:intergenic | 35.0% |
| TAACAGAGATACCTGTTCTT+AGG | - | chr5_1:2890498-2890517 | Msa0711010:five_prime_UTR | 35.0% | |
| AACAGAGATACCTGTTCTTA+GGG | - | chr5_1:2890499-2890518 | Msa0711010:five_prime_UTR | 35.0% | |
| ACAAAAACCCCGTGTTTGTT+TGG | - | chr5_1:2886531-2886550 | Msa0711010:three_prime_UTR | 40.0% | |
| CAAAAACCCCGTGTTTGTTT+GGG | - | chr5_1:2886532-2886551 | Msa0711010:three_prime_UTR | 40.0% | |
| GGTTTCCAAACACAACAAAG+AGG | + | chr5_1:2886593-2886612 | None:intergenic | 40.0% | |
| AGACGAGAAGATGATCACTA+TGG | + | chr5_1:2886734-2886753 | None:intergenic | 40.0% | |
| TGGAAGCAACAATCAAGAAC+AGG | + | chr5_1:2886831-2886850 | None:intergenic | 40.0% | |
| !! | TGTAGCCTCATTTTTGCTAC+CGG | - | chr5_1:2886966-2886985 | Msa0711010:intron | 40.0% |
| ! | TACCGGTAAGGAGGATATTT+TGG | - | chr5_1:2886983-2887002 | Msa0711010:intron | 40.0% |
| ! | ACCGGTAAGGAGGATATTTT+GGG | - | chr5_1:2886984-2887003 | Msa0711010:intron | 40.0% |
| TCCCAAAATATCCTCCTTAC+CGG | + | chr5_1:2886988-2887007 | None:intergenic | 40.0% | |
| GATACAATATACCGCTGTCT+TGG | - | chr5_1:2887163-2887182 | Msa0711010:intron | 40.0% | |
| TCATTTAACAACTGTTCCCG+TGG | - | chr5_1:2887457-2887476 | Msa0711010:intron | 40.0% | |
| GCAATTGATCACTGGAAGTT+GGG | - | chr5_1:2887987-2888006 | Msa0711010:intron | 40.0% | |
| !! | TCTAGGGTCCCAACATTTTA+TGG | + | chr5_1:2888019-2888038 | None:intergenic | 40.0% |
| ATAAAATGTTGGGACCCTAG+AGG | - | chr5_1:2888018-2888037 | Msa0711010:intron | 40.0% | |
| GATAGAGAGTAAACACGTTC+AGG | + | chr5_1:2888087-2888106 | None:intergenic | 40.0% | |
| CTCTATCTCTTGTTGGACAT+CGG | - | chr5_1:2888100-2888119 | Msa0711010:intron | 40.0% | |
| GGAATTCTTTGACCTATCTG+AGG | - | chr5_1:2888567-2888586 | Msa0711010:intron | 40.0% | |
| GTCAGGAAACGATAATCTCT+TGG | - | chr5_1:2888976-2888995 | Msa0711010:CDS | 40.0% | |
| ! | AAATGGTTGCAAGTTGGGAA+AGG | - | chr5_1:2889075-2889094 | Msa0711010:intron | 40.0% |
| TCTCCTATCAGTACCATTCT+AGG | - | chr5_1:2889246-2889265 | Msa0711010:intron | 40.0% | |
| TCAGAACACCAAAGATGACA+TGG | - | chr5_1:2889280-2889299 | Msa0711010:intron | 40.0% | |
| CAGAACACCAAAGATGACAT+GGG | - | chr5_1:2889281-2889300 | Msa0711010:intron | 40.0% | |
| AGAACACCAAAGATGACATG+GGG | - | chr5_1:2889282-2889301 | Msa0711010:intron | 40.0% | |
| !! | AGTGATAATTGGGTTAGCAG+CGG | + | chr5_1:2889568-2889587 | None:intergenic | 40.0% |
| AGATATGGTACATTTGCCAC+AGG | - | chr5_1:2889683-2889702 | Msa0711010:intron | 40.0% | |
| !!! | GTGACGGTTTTGTTAACGTA+TGG | - | chr5_1:2889711-2889730 | Msa0711010:intron | 40.0% |
| !!! | GGTTTTGTTAACGTATGGGA+CGG | - | chr5_1:2889716-2889735 | Msa0711010:intron | 40.0% |
| CAACAAAAAGAGGCTATACC+AGG | - | chr5_1:2889742-2889761 | Msa0711010:intron | 40.0% | |
| TGTAACTTGATGCAACAGCT+AGG | + | chr5_1:2889911-2889930 | None:intergenic | 40.0% | |
| TCTTTGGTATGAACATCCCA+AGG | - | chr5_1:2890292-2890311 | Msa0711010:CDS | 40.0% | |
| ACAGGTATCTCTGTTAGAGA+TGG | + | chr5_1:2890494-2890513 | None:intergenic | 40.0% | |
| TTAACAAGCCCTCCATCAGA+CGG | - | chr5_1:2886684-2886703 | Msa0711010:three_prime_UTR | 45.0% | |
| ATGTTCGAGATTCCGTCTGA+TGG | + | chr5_1:2886699-2886718 | None:intergenic | 45.0% | |
| ATCATCTTCTCGTCTCCTCT+TGG | - | chr5_1:2886739-2886758 | Msa0711010:three_prime_UTR | 45.0% | |
| TCATCTTCTCGTCTCCTCTT+GGG | - | chr5_1:2886740-2886759 | Msa0711010:three_prime_UTR | 45.0% | |
| GGTTGCATCGTAAAGACGAA+CGG | + | chr5_1:2886772-2886791 | None:intergenic | 45.0% | |
| CTTAGAGGTGAGTTCCTTCA+CGG | - | chr5_1:2886801-2886820 | Msa0711010:CDS | 45.0% | |
| TGAAACCAGAAGAGTCGTCA+TGG | + | chr5_1:2886851-2886870 | None:intergenic | 45.0% | |
| TGACCGTCTGACAGTGTTAT+CGG | + | chr5_1:2886883-2886902 | None:intergenic | 45.0% | |
| CCTTACCGGTAGCAAAAATG+AGG | + | chr5_1:2886974-2886993 | None:intergenic | 45.0% | |
| !! | CCTCATTTTTGCTACCGGTA+AGG | - | chr5_1:2886971-2886990 | Msa0711010:intron | 45.0% |
| ! | CATTTTTGCTACCGGTAAGG+AGG | - | chr5_1:2886974-2886993 | Msa0711010:intron | 45.0% |
| GAGTACTCAACACAACGAAC+AGG | + | chr5_1:2887023-2887042 | None:intergenic | 45.0% | |
| CACGCATGTGCAAACAAGTA+TGG | + | chr5_1:2887199-2887218 | None:intergenic | 45.0% | |
| GGCAATTGATCACTGGAAGT+TGG | - | chr5_1:2887986-2888005 | Msa0711010:intron | 45.0% | |
| ! | GACAAGAGCGTACTCTAGTT+GGG | - | chr5_1:2888049-2888068 | Msa0711010:intron | 45.0% |
| TGTCTTGTCCTGAACAACGA+AGG | - | chr5_1:2888175-2888194 | Msa0711010:intron | 45.0% | |
| GTCTTGTCCTGAACAACGAA+GGG | - | chr5_1:2888176-2888195 | Msa0711010:intron | 45.0% | |
| GAAGATTCCCTTCGTTGTTC+AGG | + | chr5_1:2888186-2888205 | None:intergenic | 45.0% | |
| !! | CTCTTAGTTCTGTTGAAGGG+CGG | - | chr5_1:2888536-2888555 | Msa0711010:intron | 45.0% |
| !! | TCTTAGTTCTGTTGAAGGGC+GGG | - | chr5_1:2888537-2888556 | Msa0711010:intron | 45.0% |
| TGGAATGCCATGGCATTTAC+GGG | + | chr5_1:2888770-2888789 | None:intergenic | 45.0% | |
| GTGGAATGCCATGGCATTTA+CGG | + | chr5_1:2888771-2888790 | None:intergenic | 45.0% | |
| CTGAAAACACTTACATGGGG+TGG | + | chr5_1:2888790-2888809 | None:intergenic | 45.0% | |
| ! | CACCCCATGTAAGTGTTTTC+AGG | - | chr5_1:2888788-2888807 | Msa0711010:CDS | 45.0% |
| TGTTCTCTGGGTCCAAAGAA+TGG | - | chr5_1:2888926-2888945 | Msa0711010:CDS | 45.0% | |
| TTACCACAATGGCTTGAGTC+AGG | - | chr5_1:2888959-2888978 | Msa0711010:CDS | 45.0% | |
| TTTCCTGACTCAAGCCATTG+TGG | + | chr5_1:2888965-2888984 | None:intergenic | 45.0% | |
| TATGGTACATTTGCCACAGG+AGG | - | chr5_1:2889686-2889705 | Msa0711010:intron | 45.0% | |
| GGGACGGAAACAACAAAAAG+AGG | - | chr5_1:2889732-2889751 | Msa0711010:intron | 45.0% | |
| CGAGGCAAATGAGAAAAACC+TGG | + | chr5_1:2889763-2889782 | None:intergenic | 45.0% | |
| AACTTGATGCAACAGCTAGG+AGG | + | chr5_1:2889908-2889927 | None:intergenic | 45.0% | |
| AGCGTGTGTGTGGAGAAAAT+GGG | + | chr5_1:2889972-2889991 | None:intergenic | 45.0% | |
| CGTAGATAGCATCTTGGTCA+TGG | + | chr5_1:2890133-2890152 | None:intergenic | 45.0% | |
| TGCGAACGTAGATAGCATCT+TGG | + | chr5_1:2890139-2890158 | None:intergenic | 45.0% | |
| TTGCTGTGTTGTAAAGACCC+AGG | - | chr5_1:2890422-2890441 | Msa0711010:five_prime_UTR | 45.0% | |
| TGCTGTGTTGTAAAGACCCA+GGG | - | chr5_1:2890423-2890442 | Msa0711010:five_prime_UTR | 45.0% | |
| ATAGTAGCAGTAGTCACCCT+GGG | + | chr5_1:2890442-2890461 | None:intergenic | 45.0% | |
| AATAGTAGCAGTAGTCACCC+TGG | + | chr5_1:2890443-2890462 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTAAAAAAAAAC+TGG | - | chr5_1:2887395-2887414 | Msa0711010:intron | 5.0% |
| !!! | TTTTTTTTTAAAAAAAAACT+GGG | - | chr5_1:2887396-2887415 | Msa0711010:intron | 5.0% |
| ACACGCGACCCAAACAAACA+CGG | + | chr5_1:2886543-2886562 | None:intergenic | 50.0% | |
| CTCAACAATGGCAACACCAG+TGG | - | chr5_1:2886644-2886663 | Msa0711010:three_prime_UTR | 50.0% | |
| !! | AGGGCTTGTTAACTCTCGAC+CGG | + | chr5_1:2886676-2886695 | None:intergenic | 50.0% |
| TCGAGATTCCGTCTGATGGA+GGG | + | chr5_1:2886695-2886714 | None:intergenic | 50.0% | |
| TTCGAGATTCCGTCTGATGG+AGG | + | chr5_1:2886696-2886715 | None:intergenic | 50.0% | |
| !! | ACGAACGGTTTTGTCCCAAG+AGG | + | chr5_1:2886757-2886776 | None:intergenic | 50.0% |
| ! | CTCACCTCTAAGGACATCAG+CGG | + | chr5_1:2886793-2886812 | None:intergenic | 50.0% |
| CGTGAAGGAACTCACCTCTA+AGG | + | chr5_1:2886803-2886822 | None:intergenic | 50.0% | |
| TGCTTCCATGACGACTCTTC+TGG | - | chr5_1:2886843-2886862 | Msa0711010:CDS | 50.0% | |
| AAGTAAGTAACCTGCGGCGT+AGG | + | chr5_1:2887045-2887064 | None:intergenic | 50.0% | |
| CGAGGCAATGCAAAACTGAC+TGG | + | chr5_1:2887658-2887677 | None:intergenic | 50.0% | |
| CTTGTCCACTTGCACCTCTA+GGG | + | chr5_1:2888035-2888054 | None:intergenic | 50.0% | |
| TCTTGTCCACTTGCACCTCT+AGG | + | chr5_1:2888036-2888055 | None:intergenic | 50.0% | |
| ! | GGACAAGAGCGTACTCTAGT+TGG | - | chr5_1:2888048-2888067 | Msa0711010:intron | 50.0% |
| TGTGTACGCTGCTACCCAAA+TGG | - | chr5_1:2888225-2888244 | Msa0711010:CDS | 50.0% | |
| CGTCTATCCCGTAAATGCCA+TGG | - | chr5_1:2888760-2888779 | Msa0711010:CDS | 50.0% | |
| TTACATGGGGTGGAATGCCA+TGG | + | chr5_1:2888780-2888799 | None:intergenic | 50.0% | |
| ! | GGTTGCAAGTTGGGAAAGGT+TGG | - | chr5_1:2889079-2889098 | Msa0711010:intron | 50.0% |
| GGACGAGGAAAGATGTGCAA+AGG | - | chr5_1:2889412-2889431 | Msa0711010:intron | 50.0% | |
| TTTGCCACAGGAGGTTGTGA+CGG | - | chr5_1:2889695-2889714 | Msa0711010:intron | 50.0% | |
| AAAACCGTCACAACCTCCTG+TGG | + | chr5_1:2889702-2889721 | None:intergenic | 50.0% | |
| ! | GAGAGTGCAGCAATGCTACT+TGG | + | chr5_1:2889867-2889886 | None:intergenic | 50.0% |
| GCACTCTCGTTTAGCAGAGA+TGG | - | chr5_1:2889879-2889898 | Msa0711010:intron | 50.0% | |
| GAGCGTGTGTGTGGAGAAAA+TGG | + | chr5_1:2889973-2889992 | None:intergenic | 50.0% | |
| GAGAGAAGAGAGAGAGAGAG+AGG | + | chr5_1:2890092-2890111 | None:intergenic | 50.0% | |
| !!! | TTGGGAAGGGCTTTGGGTTT+TGG | + | chr5_1:2890185-2890204 | None:intergenic | 50.0% |
| GTGAATCACGCTGCAGGATT+GGG | + | chr5_1:2890203-2890222 | None:intergenic | 50.0% | |
| AGTGAATCACGCTGCAGGAT+TGG | + | chr5_1:2890204-2890223 | None:intergenic | 50.0% | |
| AATCCTGCAGCGTGATTCAC+TGG | - | chr5_1:2890203-2890222 | Msa0711010:CDS | 50.0% | |
| ACGCGACCCAAACAAACACG+GGG | + | chr5_1:2886541-2886560 | None:intergenic | 55.0% | |
| CACGCGACCCAAACAAACAC+GGG | + | chr5_1:2886542-2886561 | None:intergenic | 55.0% | |
| ! | GCTTGTTAACTCTCGACCGG+CGG | + | chr5_1:2886673-2886692 | None:intergenic | 55.0% |
| GCAACCGCTGATGTCCTTAG+AGG | - | chr5_1:2886786-2886805 | Msa0711010:exon | 55.0% | |
| AGAGGTGAGTTCCTTCACGG+CGG | - | chr5_1:2886804-2886823 | Msa0711010:CDS | 55.0% | |
| TCTGACAGTGTTATCGGCGG+AGG | + | chr5_1:2886877-2886896 | None:intergenic | 55.0% | |
| CCGTCTGACAGTGTTATCGG+CGG | + | chr5_1:2886880-2886899 | None:intergenic | 55.0% | |
| CCGCCGATAACACTGTCAGA+CGG | - | chr5_1:2886877-2886896 | Msa0711010:intron | 55.0% | |
| CGGCTTGTAGTAGCAACAGC+TGG | - | chr5_1:2888120-2888139 | Msa0711010:intron | 55.0% | |
| TGGGTAGCAGCGTACACATC+TGG | + | chr5_1:2888223-2888242 | None:intergenic | 55.0% | |
| CGCTGCTACCCAAATGGAAC+AGG | - | chr5_1:2888231-2888250 | Msa0711010:CDS | 55.0% | |
| !! | TGTTGAAGGGCGGGTTGCAA+TGG | - | chr5_1:2888546-2888565 | Msa0711010:intron | 55.0% |
| ! | TGACCTATCTGAGGCTAGCC+AGG | - | chr5_1:2888576-2888595 | Msa0711010:intron | 55.0% |
| !! | TTGCCTGGCTAGCCTCAGAT+AGG | + | chr5_1:2888582-2888601 | None:intergenic | 55.0% |
| AAGAACCAATCTGGGGGACG+AGG | - | chr5_1:2889397-2889416 | Msa0711010:intron | 55.0% | |
| TCTTTCCTCGTCCCCCAGAT+TGG | + | chr5_1:2889405-2889424 | None:intergenic | 55.0% | |
| ! | AGAGAGAGAGAGCGTGTGTG+TGG | + | chr5_1:2889982-2890001 | None:intergenic | 55.0% |
| GAGAGGAGAGAGAGAGAGAG+AGG | + | chr5_1:2890058-2890077 | None:intergenic | 55.0% | |
| GCAGGATTGGGAAGGGCTTT+GGG | + | chr5_1:2890191-2890210 | None:intergenic | 55.0% | |
| TGCAGGATTGGGAAGGGCTT+TGG | + | chr5_1:2890192-2890211 | None:intergenic | 55.0% | |
| TCACGCTGCAGGATTGGGAA+GGG | + | chr5_1:2890198-2890217 | None:intergenic | 55.0% | |
| ATCACGCTGCAGGATTGGGA+AGG | + | chr5_1:2890199-2890218 | None:intergenic | 55.0% | |
| GAACCAGTGAATCACGCTGC+AGG | + | chr5_1:2890209-2890228 | None:intergenic | 55.0% | |
| GCAACACCAGTGGTATCCGC+CGG | - | chr5_1:2886654-2886673 | Msa0711010:three_prime_UTR | 60.0% | |
| CAAGAACAGGTCCGCCGTGA+AGG | + | chr5_1:2886818-2886837 | None:intergenic | 60.0% | |
| GTTGAGTACTCCTACGCCGC+AGG | - | chr5_1:2887032-2887051 | Msa0711010:intron | 60.0% | |
| ! | TGGGACCCTAGAGGTGCAAG+TGG | - | chr5_1:2888027-2888046 | Msa0711010:intron | 60.0% |
| TCTCGACCGGCGGATACCAC+TGG | + | chr5_1:2886663-2886682 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 2886482 | 2890529 | 2886482 | ID=Msa0711010;Name=Msa0711010 |
| chr5_1 | mRNA | 2886482 | 2890529 | 2886482 | ID=Msa0711010-mRNA-1;Parent=Msa0711010;Name=Msa0711010-mRNA-1;_AED=0.04;_eAED=0.04;_QI=169|1|1|1|1|1|8|312|340 |
| chr5_1 | exon | 2886482 | 2886881 | 2886482 | ID=Msa0711010-mRNA-1:exon:1001;Parent=Msa0711010-mRNA-1 |
| chr5_1 | exon | 2887059 | 2887159 | 2887059 | ID=Msa0711010-mRNA-1:exon:1000;Parent=Msa0711010-mRNA-1 |
| chr5_1 | exon | 2887248 | 2887326 | 2887248 | ID=Msa0711010-mRNA-1:exon:999;Parent=Msa0711010-mRNA-1 |
| chr5_1 | exon | 2888216 | 2888296 | 2888216 | ID=Msa0711010-mRNA-1:exon:998;Parent=Msa0711010-mRNA-1 |
| chr5_1 | exon | 2888406 | 2888481 | 2888406 | ID=Msa0711010-mRNA-1:exon:997;Parent=Msa0711010-mRNA-1 |
| chr5_1 | exon | 2888759 | 2889025 | 2888759 | ID=Msa0711010-mRNA-1:exon:996;Parent=Msa0711010-mRNA-1 |
| chr5_1 | exon | 2889958 | 2890040 | 2889958 | ID=Msa0711010-mRNA-1:exon:995;Parent=Msa0711010-mRNA-1 |
| chr5_1 | exon | 2890113 | 2890529 | 2890113 | ID=Msa0711010-mRNA-1:exon:994;Parent=Msa0711010-mRNA-1 |
| chr5_1 | five_prime_UTR | 2890361 | 2890529 | 2890361 | ID=Msa0711010-mRNA-1:five_prime_utr;Parent=Msa0711010-mRNA-1 |
| chr5_1 | CDS | 2890113 | 2890360 | 2890113 | ID=Msa0711010-mRNA-1:cds;Parent=Msa0711010-mRNA-1 |
| chr5_1 | CDS | 2889958 | 2890040 | 2889958 | ID=Msa0711010-mRNA-1:cds;Parent=Msa0711010-mRNA-1 |
| chr5_1 | CDS | 2888759 | 2889025 | 2888759 | ID=Msa0711010-mRNA-1:cds;Parent=Msa0711010-mRNA-1 |
| chr5_1 | CDS | 2888406 | 2888481 | 2888406 | ID=Msa0711010-mRNA-1:cds;Parent=Msa0711010-mRNA-1 |
| chr5_1 | CDS | 2888216 | 2888296 | 2888216 | ID=Msa0711010-mRNA-1:cds;Parent=Msa0711010-mRNA-1 |
| chr5_1 | CDS | 2887248 | 2887326 | 2887248 | ID=Msa0711010-mRNA-1:cds;Parent=Msa0711010-mRNA-1 |
| chr5_1 | CDS | 2887059 | 2887159 | 2887059 | ID=Msa0711010-mRNA-1:cds;Parent=Msa0711010-mRNA-1 |
| chr5_1 | CDS | 2886794 | 2886881 | 2886794 | ID=Msa0711010-mRNA-1:cds;Parent=Msa0711010-mRNA-1 |
| chr5_1 | three_prime_UTR | 2886482 | 2886793 | 2886482 | ID=Msa0711010-mRNA-1:three_prime_utr;Parent=Msa0711010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
