Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443720 | sp|Q9LJN8|BUB31_ARATH | 84.706 | 340 | 52 | 0 | 1 | 340 | 1 | 340 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443720 | G7K0X2 | 98.521 | 338 | 5 | 0 | 3 | 340 | 7 | 344 | 0.0 | 700 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1381800 | Msa1443720 | 0.831745 | 1.402661e-55 | -8.615850e-47 |
| Msa1406720 | Msa1443720 | 0.800967 | 1.123855e-48 | -8.615850e-47 |
| Msa1424370 | Msa1443720 | 0.810064 | 1.387755e-50 | -8.615850e-47 |
| Msa1434640 | Msa1443720 | 0.809195 | 2.133455e-50 | -8.615850e-47 |
| Msa0625620 | Msa1443720 | 0.809110 | 2.224651e-50 | -8.615850e-47 |
| Msa0653160 | Msa1443720 | 0.824987 | 5.991564e-54 | -8.615850e-47 |
| Msa0688620 | Msa1443720 | 0.832843 | 7.500157e-56 | -8.615850e-47 |
| Msa0695560 | Msa1443720 | 0.811918 | 5.505693e-51 | -8.615850e-47 |
| Msa0711010 | Msa1443720 | 0.911318 | 6.965962e-83 | -8.615850e-47 |
| Msa0749190 | Msa1443720 | 0.833422 | 5.383725e-56 | -8.615850e-47 |
| Msa0750520 | Msa1443720 | 0.835594 | 1.532323e-56 | -8.615850e-47 |
| Msa0752230 | Msa1443720 | 0.899662 | 1.587884e-77 | -8.615850e-47 |
| Msa0127340 | Msa1443720 | 0.809847 | 1.545510e-50 | -8.615850e-47 |
| Msa0156050 | Msa1443720 | 0.815647 | 8.306969e-52 | -8.615850e-47 |
| Msa0156090 | Msa1443720 | 0.812208 | 4.758492e-51 | -8.615850e-47 |
| Msa1331650 | Msa1443720 | 0.816315 | 5.893291e-52 | -8.615850e-47 |
| Msa0373170 | Msa1443720 | 0.806133 | 9.537786e-50 | -8.615850e-47 |
| Msa0412130 | Msa1443720 | 0.803428 | 3.502669e-49 | -8.615850e-47 |
| Msa0420670 | Msa1443720 | 0.805741 | 1.152944e-49 | -8.615850e-47 |
| Msa0421750 | Msa1443720 | 0.802343 | 5.869116e-49 | -8.615850e-47 |
| Msa0466520 | Msa1443720 | 0.807035 | 6.152456e-50 | -8.615850e-47 |
| Msa0467690 | Msa1443720 | 0.808736 | 2.674504e-50 | -8.615850e-47 |
| Msa1071410 | Msa1443720 | 0.834737 | 2.520332e-56 | -8.615850e-47 |
| Msa0281540 | Msa1443720 | 0.823518 | 1.326701e-53 | -8.615850e-47 |
| Msa0320580 | Msa1443720 | 0.823779 | 1.152542e-53 | -8.615850e-47 |
| Msa0344110 | Msa1443720 | 0.823903 | 1.078067e-53 | -8.615850e-47 |
| Msa1212700 | Msa1443720 | 0.818694 | 1.715209e-52 | -8.615850e-47 |
| Msa1212920 | Msa1443720 | 0.837645 | 4.600846e-57 | -8.615850e-47 |
| Msa0507810 | Msa1443720 | 0.801241 | 9.878605e-49 | -8.615850e-47 |
| Msa0507920 | Msa1443720 | 0.814114 | 1.817119e-51 | -8.615850e-47 |
| Msa0512530 | Msa1443720 | 0.810058 | 1.392287e-50 | -8.615850e-47 |
| Msa0561560 | Msa1443720 | 0.801859 | 7.379733e-49 | -8.615850e-47 |
| Msa0580990 | Msa1443720 | 0.888148 | 7.634869e-73 | -8.615850e-47 |
| Msa0582460 | Msa1443720 | 0.802795 | 4.735745e-49 | -8.615850e-47 |
| Msa0900090 | Msa1443720 | 0.802755 | 4.826974e-49 | -8.615850e-47 |
| Msa0901150 | Msa1443720 | 0.816341 | 5.813823e-52 | -8.615850e-47 |
| Msa0926080 | Msa1443720 | 0.805661 | 1.198338e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443720 | MtrunA17_Chr5g0393711 | 98.521 | 338 | 5 | 0 | 3 | 340 | 7 | 344 | 0.0 | 700 |
| Msa1443720 | MtrunA17_Chr5g0418221 | 37.658 | 316 | 189 | 5 | 15 | 328 | 16 | 325 | 1.09e-67 | 215 |
| Msa1443720 | MtrunA17_Chr2g0278901 | 34.226 | 336 | 197 | 7 | 11 | 333 | 20 | 344 | 9.23e-64 | 206 |
| Msa1443720 | MtrunA17_Chr8g0367631 | 34.524 | 336 | 197 | 7 | 11 | 334 | 18 | 342 | 3.32e-63 | 204 |
| Msa1443720 | MtrunA17_Chr1g0198231 | 31.707 | 328 | 193 | 7 | 7 | 314 | 12 | 328 | 7.79e-48 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443720 | AT3G19590.1 | 84.706 | 340 | 52 | 0 | 1 | 340 | 1 | 340 | 0.0 | 615 |
| Msa1443720 | AT1G49910.1 | 85.119 | 336 | 50 | 0 | 3 | 338 | 2 | 337 | 0.0 | 608 |
| Msa1443720 | AT1G80670.1 | 35.821 | 335 | 192 | 8 | 11 | 333 | 19 | 342 | 1.95e-65 | 210 |
| Msa1443720 | AT1G69400.1 | 36.334 | 311 | 191 | 4 | 11 | 320 | 7 | 311 | 3.70e-64 | 206 |
| Msa1443720 | AT1G69400.2 | 37.037 | 243 | 147 | 3 | 11 | 253 | 7 | 243 | 3.04e-46 | 158 |
Find 115 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATATGCTTCTCGAAATT+TGG | 0.116715 | tig0030514:-10297 | Msa1443720:three_prime_UTR |
| TACCGGTAAGGAGGATATTT+TGG | 0.159397 | tig0030514:-13766 | Msa1443720:CDS |
| TTGGGAAGGGCTTTGGGTTT+TGG | 0.164675 | tig0030514:+10582 | None:intergenic |
| TGCAGGATTGGGAAGGGCTT+TGG | 0.197252 | tig0030514:+10575 | None:intergenic |
| TAACAGAGATACCTGTTCTT+AGG | 0.220195 | tig0030514:-10266 | Msa1443720:three_prime_UTR |
| ATACATGCTAGTTAACATTT+TGG | 0.252540 | tig0030514:-10414 | Msa1443720:three_prime_UTR |
| TGCTTTCATGATGACTCTTC+TGG | 0.265402 | tig0030514:-13911 | Msa1443720:CDS |
| GTGGAATGCCATGGCATTTA+CGG | 0.284148 | tig0030514:+11977 | None:intergenic |
| ATTTCCCTCTTTGTTGTGTT+TGG | 0.287524 | tig0030514:-14169 | Msa1443720:five_prime_UTR |
| GTGTACTTTGTTCACATCTT+TGG | 0.299055 | tig0030514:-10488 | Msa1443720:three_prime_UTR |
| CTACCTATCTAATCTAATCT+AGG | 0.306261 | tig0030514:+14142 | None:intergenic |
| GCAGGATTGGGAAGGGCTTT+GGG | 0.318991 | tig0030514:+10576 | None:intergenic |
| TACAGTTTACCTGTTCCATT+TGG | 0.330327 | tig0030514:+12505 | None:intergenic |
| GAAGATTCCCTTCGTTGTTC+AGG | 0.332221 | tig0030514:+12562 | None:intergenic |
| GTTTACTCTCTATCTCTTGT+TGG | 0.372907 | tig0030514:-12652 | Msa1443720:CDS |
| ATCATCTTCTCGTCTCCTCT+TGG | 0.379669 | tig0030514:-14015 | Msa1443720:CDS |
| TCCCAAAATATCCTCCTTAC+CGG | 0.391787 | tig0030514:+13764 | None:intergenic |
| GTTGTGAATACTTACGGTTT+AGG | 0.392170 | tig0030514:+10800 | None:intergenic |
| TGGAATGCCATGGCATTTAC+GGG | 0.398545 | tig0030514:+11978 | None:intergenic |
| GATAGAGAGTAAACACGTTC+AGG | 0.399955 | tig0030514:+12661 | None:intergenic |
| AGTGAATCACGCTGCAGGAT+TGG | 0.403543 | tig0030514:+10563 | None:intergenic |
| CGTGAAGGAACTCACCTCTA+AGG | 0.414200 | tig0030514:+13954 | None:intergenic |
| GTGAATCACGCTGCAGGATT+GGG | 0.415119 | tig0030514:+10564 | None:intergenic |
| GCAACCGCTGATGTCCTTAG+AGG | 0.424329 | tig0030514:-13968 | Msa1443720:CDS |
| TGGGTAGCAGCGTACACATC+TGG | 0.426524 | tig0030514:+12525 | None:intergenic |
| CGCTGCTACCCAAATGGAAC+AGG | 0.433713 | tig0030514:-12514 | Msa1443720:intron |
| TCTTGTCCACTTGCACCTCT+AGG | 0.434348 | tig0030514:+12712 | None:intergenic |
| TGACCGTCTGACAGTGTTAT+CGG | 0.437288 | tig0030514:+13874 | None:intergenic |
| GGGATAAAACCATAAAATGT+TGG | 0.442375 | tig0030514:-12738 | Msa1443720:CDS |
| GCAATTGATCACTGGAAGTT+GGG | 0.444451 | tig0030514:-12758 | Msa1443720:CDS |
| TCATCTTCTCGTCTCCTCTT+GGG | 0.446872 | tig0030514:-14014 | Msa1443720:CDS |
| GGCAATTGATCACTGGAAGT+TGG | 0.450395 | tig0030514:-12759 | Msa1443720:CDS |
| GGATAAAACCATAAAATGTT+GGG | 0.457603 | tig0030514:-12737 | Msa1443720:CDS |
| TGACCTATCTGAGGCTAGCC+AGG | 0.461002 | tig0030514:-12169 | Msa1443720:CDS |
| ACGGAGTAGTCCCTAAGAAC+AGG | 0.467630 | tig0030514:+10255 | None:intergenic |
| CTCTATCTCTTGTTGGACAT+CGG | 0.475750 | tig0030514:-12645 | Msa1443720:CDS |
| ACAACAAATATTTACAATGA+AGG | 0.476560 | tig0030514:+10364 | None:intergenic |
| AACAGAGATACCTGTTCTTA+GGG | 0.477008 | tig0030514:-10265 | Msa1443720:three_prime_UTR |
| AAAATCAATACTTCTTTGCC+TGG | 0.480508 | tig0030514:+12151 | None:intergenic |
| GGACAAGAGCGTACTCTAGT+TGG | 0.480881 | tig0030514:-12697 | Msa1443720:CDS |
| ACAGTTTACCTGTTCCATTT+GGG | 0.482139 | tig0030514:+12506 | None:intergenic |
| TGTGTACGCTGCTACCCAAA+TGG | 0.483373 | tig0030514:-12520 | Msa1443720:CDS |
| TCACAACATTAGTCTACCTT+GGG | 0.483597 | tig0030514:+10456 | None:intergenic |
| CTTAGAGGTGAGTTCCTTCA+CGG | 0.485403 | tig0030514:-13953 | Msa1443720:CDS |
| GAGAGTGCAGCAATGCTACT+TGG | 0.487185 | tig0030514:+10881 | None:intergenic |
| AATCCTGCAGCGTGATTCAC+TGG | 0.488528 | tig0030514:-10561 | Msa1443720:exon |
| TTCACAACATTAGTCTACCT+TGG | 0.489834 | tig0030514:+10455 | None:intergenic |
| TGAAAGCAACAGTCAAGAAC+AGG | 0.491183 | tig0030514:+13926 | None:intergenic |
| TTGCCTGGCTAGCCTCAGAT+AGG | 0.496802 | tig0030514:+12166 | None:intergenic |
| ATGTTCGAGATTCCGTCTGA+TGG | 0.502489 | tig0030514:+14058 | None:intergenic |
| GACAAGAGCGTACTCTAGTT+GGG | 0.502955 | tig0030514:-12696 | Msa1443720:CDS |
| CTTGTCCACTTGCACCTCTA+GGG | 0.505930 | tig0030514:+12713 | None:intergenic |
| TCTCGACCGGCGGATACCAC+TGG | 0.514276 | tig0030514:+14094 | None:intergenic |
| TGTTGAAGGGCGGGTTGCAA+TGG | 0.517015 | tig0030514:-12199 | Msa1443720:CDS |
| GAGTACTCAACACAACGAAC+AGG | 0.517820 | tig0030514:+13729 | None:intergenic |
| TATGCTCTTAGTTCTGTTGA+AGG | 0.518025 | tig0030514:-12213 | Msa1443720:CDS |
| GAACCAGTGAATCACGCTGC+AGG | 0.520926 | tig0030514:+10558 | None:intergenic |
| GCACTCTCGTTTAGCAGAGA+TGG | 0.522542 | tig0030514:-10866 | Msa1443720:CDS |
| TCTTAGTTCTGTTGAAGGGC+GGG | 0.525855 | tig0030514:-12208 | Msa1443720:CDS |
| AGACGAGAAGATGATCACTA+TGG | 0.526448 | tig0030514:+14023 | None:intergenic |
| CGTAGATAGCATCTTGGTCA+TGG | 0.526895 | tig0030514:+10634 | None:intergenic |
| TGTCATAGAAAATCTGAAGC+TGG | 0.530953 | tig0030514:-12017 | Msa1443720:CDS |
| TAGAAAATCTGAAGCTGGAA+GGG | 0.537950 | tig0030514:-12012 | Msa1443720:CDS |
| CTCTTAGTTCTGTTGAAGGG+CGG | 0.540304 | tig0030514:-12209 | Msa1443720:CDS |
| CACGCGACCCAAACAAACAC+GGG | 0.540738 | tig0030514:+14215 | None:intergenic |
| GTTGAGTACTCCTACGCCGC+AGG | 0.544652 | tig0030514:-13717 | Msa1443720:intron |
| CTGAAAACACTTACATGGGG+TGG | 0.550167 | tig0030514:+11958 | None:intergenic |
| CGGCTTGTAGTAGCAACAGC+TGG | 0.551056 | tig0030514:-12625 | Msa1443720:CDS |
| ATAGAAAATCTGAAGCTGGA+AGG | 0.551824 | tig0030514:-12013 | Msa1443720:CDS |
| ATTATAGGGCAATTGATCAC+TGG | 0.555294 | tig0030514:-12766 | Msa1443720:intron |
| CAACAAATATTTACAATGAA+GGG | 0.557765 | tig0030514:+10365 | None:intergenic |
| AACCCTAGATTAGATTAGAT+AGG | 0.559459 | tig0030514:-14145 | Msa1443720:five_prime_UTR |
| TTCGAGATTCCGTCTGATGG+AGG | 0.561551 | tig0030514:+14061 | None:intergenic |
| TACCTATCTAATCTAATCTA+GGG | 0.563320 | tig0030514:+14143 | None:intergenic |
| TTGCTGTGTTGTAAAGACCC+AGG | 0.563747 | tig0030514:-10342 | Msa1443720:three_prime_UTR |
| TCGAGATTCCGTCTGATGGA+GGG | 0.571433 | tig0030514:+14062 | None:intergenic |
| AAGTAAGTAACCTGCGGCGT+AGG | 0.571654 | tig0030514:+13707 | None:intergenic |
| TGCGAACGTAGATAGCATCT+TGG | 0.573621 | tig0030514:+10628 | None:intergenic |
| AGGGTTTGTTAACTCTCGAC+CGG | 0.575778 | tig0030514:+14081 | None:intergenic |
| ATGCTCTTAGTTCTGTTGAA+GGG | 0.579584 | tig0030514:-12212 | Msa1443720:CDS |
| ATCACGCTGCAGGATTGGGA+AGG | 0.587120 | tig0030514:+10568 | None:intergenic |
| CGTCTATCCCGTAAATGCCA+TGG | 0.598810 | tig0030514:-11985 | Msa1443720:CDS |
| TGTAACTTGATGCAACAGCT+AGG | 0.599050 | tig0030514:+10837 | None:intergenic |
| ACAGGTATCTCTGTTAGAGA+TGG | 0.601076 | tig0030514:+10273 | None:intergenic |
| GTCTTGTCCTGAACAACGAA+GGG | 0.604426 | tig0030514:-12569 | Msa1443720:CDS |
| ACGTTAATGTTTATGACATG+AGG | 0.606508 | tig0030514:-12597 | Msa1443720:CDS |
| GGAATTCTTTGACCTATCTG+AGG | 0.609008 | tig0030514:-12178 | Msa1443720:CDS |
| TGCTGTGTTGTAAAGACCCA+GGG | 0.609828 | tig0030514:-10341 | Msa1443720:three_prime_UTR |
| TCACGCTGCAGGATTGGGAA+GGG | 0.611093 | tig0030514:+10569 | None:intergenic |
| CAAGAACAGGTCCACCGTGA+AGG | 0.611175 | tig0030514:+13939 | None:intergenic |
| ACACGCGACCCAAACAAACA+CGG | 0.615363 | tig0030514:+14214 | None:intergenic |
| GTTTCCAAACACAACAAAGA+GGG | 0.617826 | tig0030514:+14165 | None:intergenic |
| AGATATGGTACATTTGCCAC+AGG | 0.618381 | tig0030514:-11062 | Msa1443720:CDS |
| TTACATGGGGTGGAATGCCA+TGG | 0.620444 | tig0030514:+11968 | None:intergenic |
| TTTGCCACAGGAGGTTGTGA+CGG | 0.624438 | tig0030514:-11050 | Msa1443720:CDS |
| ATAGTAGCAGTAGTCACCCT+GGG | 0.626060 | tig0030514:+10325 | None:intergenic |
| TGTCTTGTCCTGAACAACGA+AGG | 0.627385 | tig0030514:-12570 | Msa1443720:CDS |
| TATGGTACATTTGCCACAGG+AGG | 0.632539 | tig0030514:-11059 | Msa1443720:CDS |
| GCAACACCAGTGGTATCCGC+CGG | 0.635006 | tig0030514:-14100 | Msa1443720:CDS |
| AATAGTAGCAGTAGTCACCC+TGG | 0.638455 | tig0030514:+10324 | None:intergenic |
| TGGGACCCTAGAGGTGCAAG+TGG | 0.639134 | tig0030514:-12718 | Msa1443720:CDS |
| GGTTTCCAAACACAACAAAG+AGG | 0.648548 | tig0030514:+14164 | None:intergenic |
| TTAACAAACCCTCCATCAGA+CGG | 0.649038 | tig0030514:-14070 | Msa1443720:CDS |
| AAAACCGTCACAACCTCCTG+TGG | 0.649987 | tig0030514:+11046 | None:intergenic |
| GTTTGTTAACTCTCGACCGG+CGG | 0.651310 | tig0030514:+14084 | None:intergenic |
| CTCAACAATGGCAACACCAG+TGG | 0.659385 | tig0030514:-14110 | Msa1443720:exon |
| TCTTTGGTATGAACATCCCA+AGG | 0.659765 | tig0030514:-10472 | Msa1443720:three_prime_UTR |
| TAGTGAGTTCAACTCAACAA+TGG | 0.664816 | tig0030514:-14122 | Msa1443720:exon |
| AACTTGATGCAACAGCTAGG+AGG | 0.684112 | tig0030514:+10840 | None:intergenic |
| AGAGGTGAGTTCCTTCACGG+TGG | 0.696542 | tig0030514:-13950 | Msa1443720:CDS |
| CCGCCGATAACACTGTCAGA+CGG | 0.721323 | tig0030514:-13877 | Msa1443720:intron |
| CCGTCTGACAGTGTTATCGG+CGG | 0.724491 | tig0030514:+13877 | None:intergenic |
| ATAAAATGTTGGGACCCTAG+AGG | 0.729323 | tig0030514:-12727 | Msa1443720:CDS |
| ACGCGACCCAAACAAACACG+GGG | 0.732425 | tig0030514:+14216 | None:intergenic |
| CTCACCTCTAAGGACATCAG+CGG | 0.748654 | tig0030514:+13964 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTAAAAACTTG+GGG | - | tig0030514:11179-11198 | Msa1443720:intron | 10.0% |
| !!! | TTAAAATTTAAAACAAATTG+TGG | - | tig0030514:12648-12667 | Msa1443720:CDS | 10.0% |
| !! | TCTAAATTAACACATATAAT+TGG | + | tig0030514:10892-10911 | None:intergenic | 15.0% |
| !! | TTTGTAAGGAATAATAATTA+AGG | - | tig0030514:11471-11490 | Msa1443720:intron | 15.0% |
| !!! | TATTTGGTTTAGAAATTAAA+TGG | - | tig0030514:12841-12860 | Msa1443720:intron | 15.0% |
| !! | TAAGGAATCTTATTAATAAA+AGG | - | tig0030514:13236-13255 | Msa1443720:intron | 15.0% |
| !! | CTAATAAATTAGTGATAATT+GGG | + | tig0030514:13361-13380 | None:intergenic | 15.0% |
| !! | ACTAATAAATTAGTGATAAT+TGG | + | tig0030514:13362-13381 | None:intergenic | 15.0% |
| !!! | TATTTTTCAAAATTACTATC+AGG | + | tig0030514:13995-14014 | None:intergenic | 15.0% |
| !! | AATCAGAAAATATATACTAG+TGG | + | tig0030514:11028-11047 | None:intergenic | 20.0% |
| !! | AGTTACAAAGAAAATTCAAA+TGG | - | tig0030514:11344-11363 | Msa1443720:intron | 20.0% |
| !! | GTTACAAAGAAAATTCAAAT+GGG | - | tig0030514:11345-11364 | Msa1443720:intron | 20.0% |
| !! | ATATTATTATTTCCGTTCAA+AGG | - | tig0030514:11640-11659 | Msa1443720:intron | 20.0% |
| !!! | TTTAACTTATCCATCATTAT+AGG | - | tig0030514:11747-11766 | Msa1443720:intron | 20.0% |
| !! | TTAACTTATCCATCATTATA+GGG | - | tig0030514:11748-11767 | Msa1443720:intron | 20.0% |
| !!! | AAAAAACAACAATTTTGAAG+TGG | + | tig0030514:12426-12445 | None:intergenic | 20.0% |
| !! | TTATCAATAACATGTATGAA+AGG | + | tig0030514:12814-12833 | None:intergenic | 20.0% |
| !!! | TATTGATAATCATGACTATT+TGG | - | tig0030514:12825-12844 | Msa1443720:intron | 20.0% |
| !! | AATAAGATTCCTTATATTCA+AGG | + | tig0030514:13230-13249 | None:intergenic | 20.0% |
| !! | CAACAAATATTTACAATGAA+GGG | + | tig0030514:14166-14185 | None:intergenic | 20.0% |
| !! | ACAACAAATATTTACAATGA+AGG | + | tig0030514:14167-14186 | None:intergenic | 20.0% |
| ! | TACCTATCTAATCTAATCTA+GGG | + | tig0030514:10388-10407 | None:intergenic | 25.0% |
| ! | ACTAACAATGACAATAACAA+TGG | + | tig0030514:10708-10727 | None:intergenic | 25.0% |
| ! | TTAGCAGTTTGAAAGAAAAA+AGG | + | tig0030514:10869-10888 | None:intergenic | 25.0% |
| !! | TGAGTTTTCAGTGTTAAAAA+GGG | + | tig0030514:11114-11133 | None:intergenic | 25.0% |
| !! | TTGAGTTTTCAGTGTTAAAA+AGG | + | tig0030514:11115-11134 | None:intergenic | 25.0% |
| !!! | TTTTTTTAAAAACTTGGGGA+AGG | - | tig0030514:11183-11202 | Msa1443720:intron | 25.0% |
| !!! | TTTTTTAAAAACTTGGGGAA+GGG | - | tig0030514:11184-11203 | Msa1443720:intron | 25.0% |
| ! | GGATAAAACCATAAAATGTT+GGG | - | tig0030514:11791-11810 | Msa1443720:intron | 25.0% |
| !! | GGAATAATTTGCAAAACTTA+TGG | - | tig0030514:12062-12081 | Msa1443720:intron | 25.0% |
| ! | AATTTGCAAAACTTATGGTT+TGG | - | tig0030514:12067-12086 | Msa1443720:intron | 25.0% |
| !! | TTGAAATTTTCATCAAATGC+TGG | - | tig0030514:12116-12135 | Msa1443720:intron | 25.0% |
| !!! | AAAACAAATTGTGGTTTTAG+TGG | - | tig0030514:12657-12676 | Msa1443720:CDS | 25.0% |
| ! | AAATTAAATGGTTGCAAGTT+GGG | - | tig0030514:12853-12872 | Msa1443720:intron | 25.0% |
| ! | TAATTCTAACCATCCAATTT+CGG | + | tig0030514:13110-13129 | None:intergenic | 25.0% |
| ! | TAGAAAGAACAATGTATTCA+AGG | + | tig0030514:13271-13290 | None:intergenic | 25.0% |
| !!! | AGTGTTTTGACACTTTAATT+AGG | + | tig0030514:13428-13447 | None:intergenic | 25.0% |
| ! | AATTAACAACAGATTAGAGA+GGG | + | tig0030514:13864-13883 | None:intergenic | 25.0% |
| ! | AAATTAACAACAGATTAGAG+AGG | + | tig0030514:13865-13884 | None:intergenic | 25.0% |
| !! | ATACATGCTAGTTAACATTT+TGG | - | tig0030514:14114-14133 | Msa1443720:exon | 25.0% |
| !!! | GGGGTTTTTGTTTTTGTTTT+AGG | + | tig0030514:10296-10315 | None:intergenic | 30.0% |
| AACCCTAGATTAGATTAGAT+AGG | - | tig0030514:10383-10402 | Msa1443720:three_prime_UTR | 30.0% | |
| CTACCTATCTAATCTAATCT+AGG | + | tig0030514:10389-10408 | None:intergenic | 30.0% | |
| AATGACAATAACAATGGATC+TGG | + | tig0030514:10702-10721 | None:intergenic | 30.0% | |
| ATAAGTAAGTAAGTAACCTG+CGG | + | tig0030514:10830-10849 | None:intergenic | 30.0% | |
| !! | TTTTTAAAAACTTGGGGAAG+GGG | - | tig0030514:11185-11204 | Msa1443720:intron | 30.0% |
| !! | TTGACTTGTAAGTAACTTCA+AGG | + | tig0030514:11282-11301 | None:intergenic | 30.0% |
| ! | AAAATCAGTTTTCGCTAATC+TGG | + | tig0030514:11315-11334 | None:intergenic | 30.0% |
| !!! | GGTTTTAAACTTGATTCTCA+AGG | + | tig0030514:11554-11573 | None:intergenic | 30.0% |
| ACCAACGATGATAACATATT+TGG | - | tig0030514:11571-11590 | Msa1443720:intron | 30.0% | |
| ACCAAATATGTTATCATCGT+TGG | + | tig0030514:11575-11594 | None:intergenic | 30.0% | |
| GAAGTTTGACTATTGACAAT+GGG | - | tig0030514:11718-11737 | Msa1443720:intron | 30.0% | |
| GGGATAAAACCATAAAATGT+TGG | - | tig0030514:11790-11809 | Msa1443720:intron | 30.0% | |
| ACGTTAATGTTTATGACATG+AGG | - | tig0030514:11931-11950 | Msa1443720:intron | 30.0% | |
| ! | GCACTATTATTGATTGAAAG+AGG | - | tig0030514:12185-12204 | Msa1443720:CDS | 30.0% |
| ! | ATATCCTGCAAAAAGTATGT+GGG | + | tig0030514:12298-12317 | None:intergenic | 30.0% |
| AAAATCAATACTTCTTTGCC+TGG | + | tig0030514:12380-12399 | None:intergenic | 30.0% | |
| TTTAGCATGCTAGTGAATTA+AGG | + | tig0030514:12623-12642 | None:intergenic | 30.0% | |
| TATCAGCTATTTATGTTCTC+TGG | - | tig0030514:12696-12715 | Msa1443720:CDS | 30.0% | |
| ATCAGCTATTTATGTTCTCT+GGG | - | tig0030514:12697-12716 | Msa1443720:CDS | 30.0% | |
| AATTATCAGTGTCCATTCTT+TGG | + | tig0030514:12724-12743 | None:intergenic | 30.0% | |
| GAAATTAAATGGTTGCAAGT+TGG | - | tig0030514:12852-12871 | Msa1443720:intron | 30.0% | |
| !! | GTCATTTTCTAGTCGATTTT+TGG | + | tig0030514:12941-12960 | None:intergenic | 30.0% |
| AAATCGACTAGAAAATGACT+AGG | - | tig0030514:12942-12961 | Msa1443720:intron | 30.0% | |
| GAATGATACAAATCCTAGAA+TGG | + | tig0030514:13045-13064 | None:intergenic | 30.0% | |
| TAATATCCTCATGTCATCTT+TGG | + | tig0030514:13074-13093 | None:intergenic | 30.0% | |
| ACATGAGGATATTACACTTA+AGG | - | tig0030514:13080-13099 | Msa1443720:intron | 30.0% | |
| CATGAGGATATTACACTTAA+GGG | - | tig0030514:13081-13100 | Msa1443720:intron | 30.0% | |
| TATTACATTGTTGTACGAGT+GGG | + | tig0030514:13149-13168 | None:intergenic | 30.0% | |
| TCGTACAACAATGTAATAGT+TGG | - | tig0030514:13151-13170 | Msa1443720:intron | 30.0% | |
| TGCTAAACACCTTGAATATA+AGG | - | tig0030514:13218-13237 | Msa1443720:intron | 30.0% | |
| ! | AGTTAGTTGTGATTGATAGT+TGG | + | tig0030514:13326-13345 | None:intergenic | 30.0% |
| GAAAAATCTTCATGCAGATA+TGG | - | tig0030514:13451-13470 | Msa1443720:intron | 30.0% | |
| TAGAGATCAGATTCTTCTTA+TGG | - | tig0030514:13574-13593 | Msa1443720:intron | 30.0% | |
| TTGAATACTGCAAGGATAAA+TGG | + | tig0030514:13622-13641 | None:intergenic | 30.0% | |
| !! | TGGATATTTTGAATACTGCA+AGG | + | tig0030514:13630-13649 | None:intergenic | 30.0% |
| !! | ATCAAGTTACACTTTTGAAG+AGG | - | tig0030514:13703-13722 | Msa1443720:intron | 30.0% |
| !! | TCAAGTTACACTTTTGAAGA+GGG | - | tig0030514:13704-13723 | Msa1443720:intron | 30.0% |
| TTGATATGCTTCTCGAAATT+TGG | - | tig0030514:14231-14250 | Msa1443720:five_prime_UTR | 30.0% | |
| ! | ATTTCCCTCTTTGTTGTGTT+TGG | - | tig0030514:10359-10378 | Msa1443720:three_prime_UTR | 35.0% |
| GTTTCCAAACACAACAAAGA+GGG | + | tig0030514:10366-10385 | None:intergenic | 35.0% | |
| TAGTGAGTTCAACTCAACAA+TGG | - | tig0030514:10406-10425 | Msa1443720:three_prime_UTR | 35.0% | |
| CAATAACAATGGATCTGGAA+AGG | + | tig0030514:10697-10716 | None:intergenic | 35.0% | |
| ! | GATATGTTTTACCAAGACAG+CGG | + | tig0030514:10958-10977 | None:intergenic | 35.0% |
| AGCTAGAAACTGCAATGAAT+AGG | + | tig0030514:11088-11107 | None:intergenic | 35.0% | |
| AATAGAGTTCAAATCTCCAC+GGG | + | tig0030514:11259-11278 | None:intergenic | 35.0% | |
| GAATAGAGTTCAAATCTCCA+CGG | + | tig0030514:11260-11279 | None:intergenic | 35.0% | |
| CTTACAAAGAATATCACACG+AGG | + | tig0030514:11459-11478 | None:intergenic | 35.0% | |
| CTCGTGTGATATTCTTTGTA+AGG | - | tig0030514:11457-11476 | Msa1443720:intron | 35.0% | |
| ! | TGATTCTCAAGGCACATTTT+AGG | + | tig0030514:11543-11562 | None:intergenic | 35.0% |
| AGAATGATGTCTCCTTTGAA+CGG | + | tig0030514:11655-11674 | None:intergenic | 35.0% | |
| TGCAATTCTTGTCATTGTCA+TGG | + | tig0030514:11686-11705 | None:intergenic | 35.0% | |
| AAGAATTGCAGCTTATTTGC+TGG | - | tig0030514:11696-11715 | Msa1443720:intron | 35.0% | |
| GGAAGTTTGACTATTGACAA+TGG | - | tig0030514:11717-11736 | Msa1443720:intron | 35.0% | |
| GATCAATTGCCCTATAATGA+TGG | + | tig0030514:11760-11779 | None:intergenic | 35.0% | |
| ATTATAGGGCAATTGATCAC+TGG | - | tig0030514:11762-11781 | Msa1443720:intron | 35.0% | |
| GTTTACTCTCTATCTCTTGT+TGG | - | tig0030514:11876-11895 | Msa1443720:intron | 35.0% | |
| ACAGTTTACCTGTTCCATTT+GGG | + | tig0030514:12025-12044 | None:intergenic | 35.0% | |
| TACAGTTTACCTGTTCCATT+TGG | + | tig0030514:12026-12045 | None:intergenic | 35.0% | |
| ! | CTGTAGTGTATGTGTGATTT+TGG | - | tig0030514:12041-12060 | Msa1443720:intron | 35.0% |
| !! | GTTGAGTTTCTTAGCTTTGA+TGG | - | tig0030514:12230-12249 | Msa1443720:intron | 35.0% |
| TATGTGGGATATGAACATCA+AGG | + | tig0030514:12283-12302 | None:intergenic | 35.0% | |
| !! | ATATCCCACATACTTTTTGC+AGG | - | tig0030514:12291-12310 | Msa1443720:intron | 35.0% |
| ! | CATATCCTGCAAAAAGTATG+TGG | + | tig0030514:12299-12318 | None:intergenic | 35.0% |
| !! | TATGCTCTTAGTTCTGTTGA+AGG | - | tig0030514:12315-12334 | Msa1443720:intron | 35.0% |
| !! | ATGCTCTTAGTTCTGTTGAA+GGG | - | tig0030514:12316-12335 | Msa1443720:intron | 35.0% |
| GTAGAGTTTAGAAGCAAATG+AGG | + | tig0030514:12474-12493 | None:intergenic | 35.0% | |
| TTTGCTTCTAAACTCTACAC+AGG | - | tig0030514:12476-12495 | Msa1443720:intron | 35.0% | |
| ! | TGTCATAGAAAATCTGAAGC+TGG | - | tig0030514:12511-12530 | Msa1443720:intron | 35.0% |
| ! | ATAGAAAATCTGAAGCTGGA+AGG | - | tig0030514:12515-12534 | Msa1443720:CDS | 35.0% |
| ! | TAGAAAATCTGAAGCTGGAA+GGG | - | tig0030514:12516-12535 | Msa1443720:CDS | 35.0% |
| AACCTGAAAACACTTACATG+GGG | + | tig0030514:12576-12595 | None:intergenic | 35.0% | |
| GAACCTGAAAACACTTACAT+GGG | + | tig0030514:12577-12596 | None:intergenic | 35.0% | |
| AGAACCTGAAAACACTTACA+TGG | + | tig0030514:12578-12597 | None:intergenic | 35.0% | |
| ATTCACTAGCATGCTAAAGA+AGG | - | tig0030514:12625-12644 | Msa1443720:CDS | 35.0% | |
| GACACTGATAATTACCACAA+TGG | - | tig0030514:12731-12750 | Msa1443720:CDS | 35.0% | |
| CATCCTAACTGAATGTTGAT+AGG | - | tig0030514:12888-12907 | Msa1443720:intron | 35.0% | |
| GATCCTATCAACATTCAGTT+AGG | + | tig0030514:12894-12913 | None:intergenic | 35.0% | |
| GGAGATATTACGAATGTCAT+TGG | - | tig0030514:12963-12982 | Msa1443720:intron | 35.0% | |
| !! | AATCCTAGAATGGTACTGAT+AGG | + | tig0030514:13035-13054 | None:intergenic | 35.0% |
| CTATTACATTGTTGTACGAG+TGG | + | tig0030514:13150-13169 | None:intergenic | 35.0% | |
| TGGTGTAATAAGAACCAATC+TGG | - | tig0030514:13171-13190 | Msa1443720:intron | 35.0% | |
| GGTGTAATAAGAACCAATCT+GGG | - | tig0030514:13172-13191 | Msa1443720:intron | 35.0% | |
| GTGTAATAAGAACCAATCTG+GGG | - | tig0030514:13173-13192 | Msa1443720:intron | 35.0% | |
| TGTAATAAGAACCAATCTGG+GGG | - | tig0030514:13174-13193 | Msa1443720:intron | 35.0% | |
| AGCAGTATCAACATACTAAC+TGG | - | tig0030514:13382-13401 | Msa1443720:intron | 35.0% | |
| !!! | TGACGGTTTTGTTAACGTAT+GGG | - | tig0030514:13495-13514 | Msa1443720:intron | 35.0% |
| CTGATCTCTAAATTTACTCG+AGG | + | tig0030514:13564-13583 | None:intergenic | 35.0% | |
| GTTGTGAATACTTACGGTTT+AGG | + | tig0030514:13731-13750 | None:intergenic | 35.0% | |
| ATGGGAGTTGTGAATACTTA+CGG | + | tig0030514:13737-13756 | None:intergenic | 35.0% | |
| GTGTACTTTGTTCACATCTT+TGG | - | tig0030514:14040-14059 | Msa1443720:CDS | 35.0% | |
| ! | TCACAACATTAGTCTACCTT+GGG | + | tig0030514:14075-14094 | None:intergenic | 35.0% |
| ! | TTCACAACATTAGTCTACCT+TGG | + | tig0030514:14076-14095 | None:intergenic | 35.0% |
| TAACAGAGATACCTGTTCTT+AGG | - | tig0030514:14262-14281 | Msa1443720:five_prime_UTR | 35.0% | |
| AACAGAGATACCTGTTCTTA+GGG | - | tig0030514:14263-14282 | Msa1443720:five_prime_UTR | 35.0% | |
| ACAAAAACCCCGTGTTTGTT+TGG | - | tig0030514:10305-10324 | Msa1443720:three_prime_UTR | 40.0% | |
| CAAAAACCCCGTGTTTGTTT+GGG | - | tig0030514:10306-10325 | Msa1443720:three_prime_UTR | 40.0% | |
| GGTTTCCAAACACAACAAAG+AGG | + | tig0030514:10367-10386 | None:intergenic | 40.0% | |
| TTAACAAACCCTCCATCAGA+CGG | - | tig0030514:10458-10477 | Msa1443720:three_prime_UTR | 40.0% | |
| AGACGAGAAGATGATCACTA+TGG | + | tig0030514:10508-10527 | None:intergenic | 40.0% | |
| TGAAAGCAACAGTCAAGAAC+AGG | + | tig0030514:10605-10624 | None:intergenic | 40.0% | |
| TGCTTTCATGATGACTCTTC+TGG | - | tig0030514:10617-10636 | Msa1443720:CDS | 40.0% | |
| !! | TGTAGCCTCATTTTTGCTAC+CGG | - | tig0030514:10745-10764 | Msa1443720:intron | 40.0% |
| ! | TACCGGTAAGGAGGATATTT+TGG | - | tig0030514:10762-10781 | Msa1443720:intron | 40.0% |
| ! | ACCGGTAAGGAGGATATTTT+GGG | - | tig0030514:10763-10782 | Msa1443720:intron | 40.0% |
| TCCCAAAATATCCTCCTTAC+CGG | + | tig0030514:10767-10786 | None:intergenic | 40.0% | |
| TCATTTAACAACTGTTCCCG+TGG | - | tig0030514:11240-11259 | Msa1443720:intron | 40.0% | |
| GCAATTGATCACTGGAAGTT+GGG | - | tig0030514:11770-11789 | Msa1443720:intron | 40.0% | |
| !! | TCTAGGGTCCCAACATTTTA+TGG | + | tig0030514:11802-11821 | None:intergenic | 40.0% |
| ATAAAATGTTGGGACCCTAG+AGG | - | tig0030514:11801-11820 | Msa1443720:intron | 40.0% | |
| GATAGAGAGTAAACACGTTC+AGG | + | tig0030514:11870-11889 | None:intergenic | 40.0% | |
| CTCTATCTCTTGTTGGACAT+CGG | - | tig0030514:11883-11902 | Msa1443720:intron | 40.0% | |
| GGAATTCTTTGACCTATCTG+AGG | - | tig0030514:12350-12369 | Msa1443720:intron | 40.0% | |
| GTCAGGAAACGATAATCTCT+TGG | - | tig0030514:12759-12778 | Msa1443720:CDS | 40.0% | |
| ! | AAATGGTTGCAAGTTGGGAA+AGG | - | tig0030514:12858-12877 | Msa1443720:intron | 40.0% |
| TCTCCTATCAGTACCATTCT+AGG | - | tig0030514:13029-13048 | Msa1443720:intron | 40.0% | |
| AGAACACCAAAGATGACATG+AGG | - | tig0030514:13065-13084 | Msa1443720:intron | 40.0% | |
| CACTTAAGGGTTTCCGAAAT+TGG | - | tig0030514:13094-13113 | Msa1443720:intron | 40.0% | |
| TAAGGGTTTCCGAAATTGGA+TGG | - | tig0030514:13098-13117 | Msa1443720:intron | 40.0% | |
| !! | AGTGATAATTGGGTTAGCAG+CGG | + | tig0030514:13351-13370 | None:intergenic | 40.0% |
| AGATATGGTACATTTGCCAC+AGG | - | tig0030514:13466-13485 | Msa1443720:intron | 40.0% | |
| !!! | GTGACGGTTTTGTTAACGTA+TGG | - | tig0030514:13494-13513 | Msa1443720:intron | 40.0% |
| !!! | GGTTTTGTTAACGTATGGGA+CGG | - | tig0030514:13499-13518 | Msa1443720:intron | 40.0% |
| CAACAAAAAGAGGCTATACC+AGG | - | tig0030514:13525-13544 | Msa1443720:intron | 40.0% | |
| TGTAACTTGATGCAACAGCT+AGG | + | tig0030514:13694-13713 | None:intergenic | 40.0% | |
| AACAACAGATTAGAGAGGGA+GGG | + | tig0030514:13860-13879 | None:intergenic | 40.0% | |
| TAACAACAGATTAGAGAGGG+AGG | + | tig0030514:13861-13880 | None:intergenic | 40.0% | |
| TCTTTGGTATGAACATCCCA+AGG | - | tig0030514:14056-14075 | Msa1443720:CDS | 40.0% | |
| ACAGGTATCTCTGTTAGAGA+TGG | + | tig0030514:14258-14277 | None:intergenic | 40.0% | |
| !! | AGGGTTTGTTAACTCTCGAC+CGG | + | tig0030514:10450-10469 | None:intergenic | 45.0% |
| ATGTTCGAGATTCCGTCTGA+TGG | + | tig0030514:10473-10492 | None:intergenic | 45.0% | |
| ATCATCTTCTCGTCTCCTCT+TGG | - | tig0030514:10513-10532 | Msa1443720:three_prime_UTR | 45.0% | |
| TCATCTTCTCGTCTCCTCTT+GGG | - | tig0030514:10514-10533 | Msa1443720:three_prime_UTR | 45.0% | |
| !! | ACGAACAGTTTTGTCCCAAG+AGG | + | tig0030514:10531-10550 | None:intergenic | 45.0% |
| CTTAGAGGTGAGTTCCTTCA+CGG | - | tig0030514:10575-10594 | Msa1443720:CDS | 45.0% | |
| TGACCGTCTGACAGTGTTAT+CGG | + | tig0030514:10657-10676 | None:intergenic | 45.0% | |
| CCTTACCGGTAGCAAAAATG+AGG | + | tig0030514:10753-10772 | None:intergenic | 45.0% | |
| !! | CCTCATTTTTGCTACCGGTA+AGG | - | tig0030514:10750-10769 | Msa1443720:intron | 45.0% |
| ! | CATTTTTGCTACCGGTAAGG+AGG | - | tig0030514:10753-10772 | Msa1443720:intron | 45.0% |
| GAGTACTCAACACAACGAAC+AGG | + | tig0030514:10802-10821 | None:intergenic | 45.0% | |
| GATACAACATACCGCTGTCT+TGG | - | tig0030514:10944-10963 | Msa1443720:intron | 45.0% | |
| CACGCATGTGCAAACAAGTA+TGG | + | tig0030514:10980-10999 | None:intergenic | 45.0% | |
| GGCAATTGATCACTGGAAGT+TGG | - | tig0030514:11769-11788 | Msa1443720:intron | 45.0% | |
| ! | GACAAGAGCGTACTCTAGTT+GGG | - | tig0030514:11832-11851 | Msa1443720:intron | 45.0% |
| TGTCTTGTCCTGAACAACGA+AGG | - | tig0030514:11958-11977 | Msa1443720:intron | 45.0% | |
| GTCTTGTCCTGAACAACGAA+GGG | - | tig0030514:11959-11978 | Msa1443720:intron | 45.0% | |
| GAAGATTCCCTTCGTTGTTC+AGG | + | tig0030514:11969-11988 | None:intergenic | 45.0% | |
| !! | CTCTTAGTTCTGTTGAAGGG+CGG | - | tig0030514:12319-12338 | Msa1443720:intron | 45.0% |
| !! | TCTTAGTTCTGTTGAAGGGC+GGG | - | tig0030514:12320-12339 | Msa1443720:intron | 45.0% |
| TGGAATGCCATGGCATTTAC+GGG | + | tig0030514:12553-12572 | None:intergenic | 45.0% | |
| GTGGAATGCCATGGCATTTA+CGG | + | tig0030514:12554-12573 | None:intergenic | 45.0% | |
| CTGAAAACACTTACATGGGG+TGG | + | tig0030514:12573-12592 | None:intergenic | 45.0% | |
| ! | CACCCCATGTAAGTGTTTTC+AGG | - | tig0030514:12571-12590 | Msa1443720:CDS | 45.0% |
| TGTTCTCTGGGTCCAAAGAA+TGG | - | tig0030514:12709-12728 | Msa1443720:CDS | 45.0% | |
| TTACCACAATGGCTTGAGTC+AGG | - | tig0030514:12742-12761 | Msa1443720:CDS | 45.0% | |
| TTTCCTGACTCAAGCCATTG+TGG | + | tig0030514:12748-12767 | None:intergenic | 45.0% | |
| TATGGTACATTTGCCACAGG+AGG | - | tig0030514:13469-13488 | Msa1443720:intron | 45.0% | |
| GGGACGGAAACAACAAAAAG+AGG | - | tig0030514:13515-13534 | Msa1443720:intron | 45.0% | |
| CGAGGCAAATGAGAAAAACC+TGG | + | tig0030514:13546-13565 | None:intergenic | 45.0% | |
| AACTTGATGCAACAGCTAGG+AGG | + | tig0030514:13691-13710 | None:intergenic | 45.0% | |
| AGCGTGTGTGTGGAGAAAAT+GGG | + | tig0030514:13755-13774 | None:intergenic | 45.0% | |
| CGTAGATAGCATCTTGGTCA+TGG | + | tig0030514:13897-13916 | None:intergenic | 45.0% | |
| TGCGAACGTAGATAGCATCT+TGG | + | tig0030514:13903-13922 | None:intergenic | 45.0% | |
| TTGCTGTGTTGTAAAGACCC+AGG | - | tig0030514:14186-14205 | Msa1443720:five_prime_UTR | 45.0% | |
| TGCTGTGTTGTAAAGACCCA+GGG | - | tig0030514:14187-14206 | Msa1443720:five_prime_UTR | 45.0% | |
| ATAGTAGCAGTAGTCACCCT+GGG | + | tig0030514:14206-14225 | None:intergenic | 45.0% | |
| AATAGTAGCAGTAGTCACCC+TGG | + | tig0030514:14207-14226 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTAAAAACT+TGG | - | tig0030514:11177-11196 | Msa1443720:intron | 5.0% |
| !!! | TTTTTTTTTTTTAAAAACTT+GGG | - | tig0030514:11178-11197 | Msa1443720:intron | 5.0% |
| ACACGCGACCCAAACAAACA+CGG | + | tig0030514:10317-10336 | None:intergenic | 50.0% | |
| CTCAACAATGGCAACACCAG+TGG | - | tig0030514:10418-10437 | Msa1443720:three_prime_UTR | 50.0% | |
| ! | GTTTGTTAACTCTCGACCGG+CGG | + | tig0030514:10447-10466 | None:intergenic | 50.0% |
| TCGAGATTCCGTCTGATGGA+GGG | + | tig0030514:10469-10488 | None:intergenic | 50.0% | |
| TTCGAGATTCCGTCTGATGG+AGG | + | tig0030514:10470-10489 | None:intergenic | 50.0% | |
| ! | CTCACCTCTAAGGACATCAG+CGG | + | tig0030514:10567-10586 | None:intergenic | 50.0% |
| CGTGAAGGAACTCACCTCTA+AGG | + | tig0030514:10577-10596 | None:intergenic | 50.0% | |
| AAGTAAGTAACCTGCGGCGT+AGG | + | tig0030514:10824-10843 | None:intergenic | 50.0% | |
| CGAGGCAATGCAAAACTGAC+TGG | + | tig0030514:11441-11460 | None:intergenic | 50.0% | |
| CTTGTCCACTTGCACCTCTA+GGG | + | tig0030514:11818-11837 | None:intergenic | 50.0% | |
| TCTTGTCCACTTGCACCTCT+AGG | + | tig0030514:11819-11838 | None:intergenic | 50.0% | |
| ! | GGACAAGAGCGTACTCTAGT+TGG | - | tig0030514:11831-11850 | Msa1443720:intron | 50.0% |
| TGTGTACGCTGCTACCCAAA+TGG | - | tig0030514:12008-12027 | Msa1443720:CDS | 50.0% | |
| CGTCTATCCCGTAAATGCCA+TGG | - | tig0030514:12543-12562 | Msa1443720:CDS | 50.0% | |
| TTACATGGGGTGGAATGCCA+TGG | + | tig0030514:12563-12582 | None:intergenic | 50.0% | |
| ! | GGTTGCAAGTTGGGAAAGGT+TGG | - | tig0030514:12862-12881 | Msa1443720:intron | 50.0% |
| GGACGAGGAAAGATGTGCAA+AGG | - | tig0030514:13195-13214 | Msa1443720:intron | 50.0% | |
| TTTGCCACAGGAGGTTGTGA+CGG | - | tig0030514:13478-13497 | Msa1443720:intron | 50.0% | |
| AAAACCGTCACAACCTCCTG+TGG | + | tig0030514:13485-13504 | None:intergenic | 50.0% | |
| ! | GAGAGTGCAGCAATGCTACT+TGG | + | tig0030514:13650-13669 | None:intergenic | 50.0% |
| GCACTCTCGTTTAGCAGAGA+TGG | - | tig0030514:13662-13681 | Msa1443720:intron | 50.0% | |
| GAGCGTGTGTGTGGAGAAAA+TGG | + | tig0030514:13756-13775 | None:intergenic | 50.0% | |
| ACAGATTAGAGAGGGAGGGA+GGG | + | tig0030514:13856-13875 | None:intergenic | 50.0% | |
| AACAGATTAGAGAGGGAGGG+AGG | + | tig0030514:13857-13876 | None:intergenic | 50.0% | |
| !!! | TTGGGAAGGGCTTTGGGTTT+TGG | + | tig0030514:13949-13968 | None:intergenic | 50.0% |
| GTGAATCACGCTGCAGGATT+GGG | + | tig0030514:13967-13986 | None:intergenic | 50.0% | |
| AGTGAATCACGCTGCAGGAT+TGG | + | tig0030514:13968-13987 | None:intergenic | 50.0% | |
| AATCCTGCAGCGTGATTCAC+TGG | - | tig0030514:13967-13986 | Msa1443720:CDS | 50.0% | |
| ACGCGACCCAAACAAACACG+GGG | + | tig0030514:10315-10334 | None:intergenic | 55.0% | |
| CACGCGACCCAAACAAACAC+GGG | + | tig0030514:10316-10335 | None:intergenic | 55.0% | |
| GCAACCGCTGATGTCCTTAG+AGG | - | tig0030514:10560-10579 | Msa1443720:exon | 55.0% | |
| AGAGGTGAGTTCCTTCACGG+TGG | - | tig0030514:10578-10597 | Msa1443720:CDS | 55.0% | |
| CAAGAACAGGTCCACCGTGA+AGG | + | tig0030514:10592-10611 | None:intergenic | 55.0% | |
| CCGTCTGACAGTGTTATCGG+CGG | + | tig0030514:10654-10673 | None:intergenic | 55.0% | |
| CCGCCGATAACACTGTCAGA+CGG | - | tig0030514:10651-10670 | Msa1443720:intron | 55.0% | |
| CGGCTTGTAGTAGCAACAGC+TGG | - | tig0030514:11903-11922 | Msa1443720:intron | 55.0% | |
| TGGGTAGCAGCGTACACATC+TGG | + | tig0030514:12006-12025 | None:intergenic | 55.0% | |
| CGCTGCTACCCAAATGGAAC+AGG | - | tig0030514:12014-12033 | Msa1443720:CDS | 55.0% | |
| !! | TGTTGAAGGGCGGGTTGCAA+TGG | - | tig0030514:12329-12348 | Msa1443720:intron | 55.0% |
| ! | TGACCTATCTGAGGCTAGCC+AGG | - | tig0030514:12359-12378 | Msa1443720:intron | 55.0% |
| !! | TTGCCTGGCTAGCCTCAGAT+AGG | + | tig0030514:12365-12384 | None:intergenic | 55.0% |
| AAGAACCAATCTGGGGGACG+AGG | - | tig0030514:13180-13199 | Msa1443720:intron | 55.0% | |
| TCTTTCCTCGTCCCCCAGAT+TGG | + | tig0030514:13188-13207 | None:intergenic | 55.0% | |
| ! | AGAGAGAGAGAGCGTGTGTG+TGG | + | tig0030514:13765-13784 | None:intergenic | 55.0% |
| ATTAGAGAGGGAGGGAGGGA+GGG | + | tig0030514:13852-13871 | None:intergenic | 55.0% | |
| GCAGGATTGGGAAGGGCTTT+GGG | + | tig0030514:13955-13974 | None:intergenic | 55.0% | |
| TGCAGGATTGGGAAGGGCTT+TGG | + | tig0030514:13956-13975 | None:intergenic | 55.0% | |
| TCACGCTGCAGGATTGGGAA+GGG | + | tig0030514:13962-13981 | None:intergenic | 55.0% | |
| ATCACGCTGCAGGATTGGGA+AGG | + | tig0030514:13963-13982 | None:intergenic | 55.0% | |
| GAACCAGTGAATCACGCTGC+AGG | + | tig0030514:13973-13992 | None:intergenic | 55.0% | |
| GCAACACCAGTGGTATCCGC+CGG | - | tig0030514:10428-10447 | Msa1443720:three_prime_UTR | 60.0% | |
| GTTGAGTACTCCTACGCCGC+AGG | - | tig0030514:10811-10830 | Msa1443720:intron | 60.0% | |
| ! | TGGGACCCTAGAGGTGCAAG+TGG | - | tig0030514:11810-11829 | Msa1443720:intron | 60.0% |
| GATTAGAGAGGGAGGGAGGG+AGG | + | tig0030514:13853-13872 | None:intergenic | 60.0% | |
| TCTCGACCGGCGGATACCAC+TGG | + | tig0030514:10437-10456 | None:intergenic | 65.0% | |
| GAGAGGGAGGGAGGGAGGGA+GGG | + | tig0030514:13848-13867 | None:intergenic | 70.0% | |
| AGAGAGGGAGGGAGGGAGGG+AGG | + | tig0030514:13849-13868 | None:intergenic | 70.0% | |
| GAGGGAGGGAGGGAGGGAGG+GGG | + | tig0030514:13830-13849 | None:intergenic | 75.0% | |
| GGAGGGAGGGAGGGAGGGAG+GGG | + | tig0030514:13831-13850 | None:intergenic | 75.0% | |
| GGGAGGGAGGGAGGGAGGGA+GGG | + | tig0030514:13832-13851 | None:intergenic | 75.0% | |
| AGGGAGGGAGGGAGGGAGGG+AGG | + | tig0030514:13829-13848 | None:intergenic | 75.0% | |
| GGGAGGGAGGGAGGGAGGGA+GGG | + | tig0030514:13832-13851 | None:intergenic | 75.0% | |
| AGGGAGGGAGGGAGGGAGGG+AGG | + | tig0030514:13829-13848 | None:intergenic | 75.0% | |
| GGGAGGGAGGGAGGGAGGGA+GGG | + | tig0030514:13832-13851 | None:intergenic | 75.0% | |
| AGGGAGGGAGGGAGGGAGGG+AGG | + | tig0030514:13829-13848 | None:intergenic | 75.0% | |
| GGGAGGGAGGGAGGGAGGGA+GGG | + | tig0030514:13832-13851 | None:intergenic | 75.0% | |
| AGGGAGGGAGGGAGGGAGGG+AGG | + | tig0030514:13829-13848 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030514 | gene | 10257 | 14293 | 10257 | ID=Msa1443720;Name=Msa1443720 |
| tig0030514 | mRNA | 10257 | 14293 | 10257 | ID=Msa1443720-mRNA-1;Parent=Msa1443720;Name=Msa1443720-mRNA-1;_AED=0.02;_eAED=0.02;_QI=168|1|1|1|1|1|8|312|340 |
| tig0030514 | exon | 10257 | 10656 | 10257 | ID=Msa1443720-mRNA-1:exon:14055;Parent=Msa1443720-mRNA-1 |
| tig0030514 | exon | 10815 | 10915 | 10815 | ID=Msa1443720-mRNA-1:exon:14054;Parent=Msa1443720-mRNA-1 |
| tig0030514 | exon | 11004 | 11082 | 11004 | ID=Msa1443720-mRNA-1:exon:14053;Parent=Msa1443720-mRNA-1 |
| tig0030514 | exon | 11972 | 12052 | 11972 | ID=Msa1443720-mRNA-1:exon:14052;Parent=Msa1443720-mRNA-1 |
| tig0030514 | exon | 12162 | 12237 | 12162 | ID=Msa1443720-mRNA-1:exon:14051;Parent=Msa1443720-mRNA-1 |
| tig0030514 | exon | 12515 | 12781 | 12515 | ID=Msa1443720-mRNA-1:exon:14050;Parent=Msa1443720-mRNA-1 |
| tig0030514 | exon | 13718 | 13800 | 13718 | ID=Msa1443720-mRNA-1:exon:14049;Parent=Msa1443720-mRNA-1 |
| tig0030514 | exon | 13878 | 14293 | 13878 | ID=Msa1443720-mRNA-1:exon:14048;Parent=Msa1443720-mRNA-1 |
| tig0030514 | five_prime_UTR | 14126 | 14293 | 14126 | ID=Msa1443720-mRNA-1:five_prime_utr;Parent=Msa1443720-mRNA-1 |
| tig0030514 | CDS | 13878 | 14125 | 13878 | ID=Msa1443720-mRNA-1:cds;Parent=Msa1443720-mRNA-1 |
| tig0030514 | CDS | 13718 | 13800 | 13718 | ID=Msa1443720-mRNA-1:cds;Parent=Msa1443720-mRNA-1 |
| tig0030514 | CDS | 12515 | 12781 | 12515 | ID=Msa1443720-mRNA-1:cds;Parent=Msa1443720-mRNA-1 |
| tig0030514 | CDS | 12162 | 12237 | 12162 | ID=Msa1443720-mRNA-1:cds;Parent=Msa1443720-mRNA-1 |
| tig0030514 | CDS | 11972 | 12052 | 11972 | ID=Msa1443720-mRNA-1:cds;Parent=Msa1443720-mRNA-1 |
| tig0030514 | CDS | 11004 | 11082 | 11004 | ID=Msa1443720-mRNA-1:cds;Parent=Msa1443720-mRNA-1 |
| tig0030514 | CDS | 10815 | 10915 | 10815 | ID=Msa1443720-mRNA-1:cds;Parent=Msa1443720-mRNA-1 |
| tig0030514 | CDS | 10569 | 10656 | 10569 | ID=Msa1443720-mRNA-1:cds;Parent=Msa1443720-mRNA-1 |
| tig0030514 | three_prime_UTR | 10257 | 10568 | 10257 | ID=Msa1443720-mRNA-1:three_prime_utr;Parent=Msa1443720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
