Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580990 | XP_003610622.1 | 98.521 | 338 | 5 | 0 | 3 | 340 | 7 | 344 | 0.0 | 700 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580990 | sp|Q9LJN8|BUB31_ARATH | 84.706 | 340 | 52 | 0 | 1 | 340 | 1 | 340 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580990 | G7K0X2 | 98.521 | 338 | 5 | 0 | 3 | 340 | 7 | 344 | 0.0 | 700 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030070 | Msa0580990 | 0.801152 | 1.030265e-48 | -8.615850e-47 |
| Msa0050530 | Msa0580990 | 0.813166 | 2.937737e-51 | -8.615850e-47 |
| Msa0100600 | Msa0580990 | 0.818044 | 2.407256e-52 | -8.615850e-47 |
| Msa0100890 | Msa0580990 | 0.812453 | 4.207333e-51 | -8.615850e-47 |
| Msa0109730 | Msa0580990 | 0.800539 | 1.374795e-48 | -8.615850e-47 |
| Msa0127340 | Msa0580990 | 0.806082 | 9.774433e-50 | -8.615850e-47 |
| Msa0156090 | Msa0580990 | 0.801302 | 9.600191e-49 | -8.615850e-47 |
| Msa0172590 | Msa0580990 | 0.801581 | 8.416985e-49 | -8.615850e-47 |
| Msa0204970 | Msa0580990 | 0.817416 | 3.335491e-52 | -8.615850e-47 |
| Msa0373170 | Msa0580990 | 0.823659 | 1.229376e-53 | -8.615850e-47 |
| Msa0388250 | Msa0580990 | 0.805794 | 1.123763e-49 | -8.615850e-47 |
| Msa0412130 | Msa0580990 | 0.812756 | 3.611884e-51 | -8.615850e-47 |
| Msa0420670 | Msa0580990 | 0.810969 | 8.847688e-51 | -8.615850e-47 |
| Msa0421750 | Msa0580990 | 0.804570 | 2.027209e-49 | -8.615850e-47 |
| Msa0461550 | Msa0580990 | 0.824429 | 8.109846e-54 | -8.615850e-47 |
| Msa0466520 | Msa0580990 | 0.811722 | 6.074144e-51 | -8.615850e-47 |
| Msa0467690 | Msa0580990 | 0.825052 | 5.782647e-54 | -8.615850e-47 |
| Msa0469740 | Msa0580990 | 0.807283 | 5.452091e-50 | -8.615850e-47 |
| Msa0249870 | Msa0580990 | 0.838805 | 2.312098e-57 | -8.615850e-47 |
| Msa0260630 | Msa0580990 | 0.812273 | 4.606489e-51 | -8.615850e-47 |
| Msa0281540 | Msa0580990 | 0.826920 | 2.081292e-54 | -8.615850e-47 |
| Msa0320580 | Msa0580990 | 0.825309 | 5.029950e-54 | -8.615850e-47 |
| Msa0342220 | Msa0580990 | 0.807502 | 4.898699e-50 | -8.615850e-47 |
| Msa0344110 | Msa0580990 | 0.831041 | 2.090121e-55 | -8.615850e-47 |
| Msa0507810 | Msa0580990 | 0.818426 | 1.972399e-52 | -8.615850e-47 |
| Msa0507820 | Msa0580990 | 0.827147 | 1.837133e-54 | -8.615850e-47 |
| Msa0507920 | Msa0580990 | 0.810398 | 1.175819e-50 | -8.615850e-47 |
| Msa0512530 | Msa0580990 | 0.816128 | 6.488703e-52 | -8.615850e-47 |
| Msa0514020 | Msa0580990 | 0.809993 | 1.437795e-50 | -8.615850e-47 |
| Msa0515560 | Msa0580990 | 0.813404 | 2.604130e-51 | -8.615850e-47 |
| Msa0527850 | Msa0580990 | 0.823671 | 1.221686e-53 | -8.615850e-47 |
| Msa0544410 | Msa0580990 | 0.803895 | 2.801694e-49 | -8.615850e-47 |
| Msa0552570 | Msa0580990 | 0.813992 | 1.932753e-51 | -8.615850e-47 |
| Msa0557850 | Msa0580990 | 0.828459 | 8.883538e-55 | -8.615850e-47 |
| Msa0572830 | Msa0580990 | 0.809650 | 1.704138e-50 | -8.615850e-47 |
| Msa0576330 | Msa0580990 | 0.813471 | 2.517488e-51 | -8.615850e-47 |
| Msa0580990 | Msa0582460 | 0.831725 | 1.418825e-55 | -8.615850e-47 |
| Msa0580990 | Msa0586200 | 0.815162 | 1.064586e-51 | -8.615850e-47 |
| Msa0580990 | Msa0612520 | 0.816544 | 5.236623e-52 | -8.615850e-47 |
| Msa0580990 | Msa0625620 | 0.813441 | 2.556159e-51 | -8.615850e-47 |
| Msa0580990 | Msa0647440 | 0.822245 | 2.626361e-53 | -8.615850e-47 |
| Msa0580990 | Msa0648760 | 0.805149 | 1.534217e-49 | -8.615850e-47 |
| Msa0580990 | Msa0653160 | 0.847965 | 8.282329e-60 | -8.615850e-47 |
| Msa0580990 | Msa0663290 | 0.821450 | 4.010968e-53 | -8.615850e-47 |
| Msa0580990 | Msa0664070 | 0.817590 | 3.047062e-52 | -8.615850e-47 |
| Msa0580990 | Msa0688620 | 0.831474 | 1.635633e-55 | -8.615850e-47 |
| Msa0580990 | Msa0690320 | 0.827103 | 1.882427e-54 | -8.615850e-47 |
| Msa0580990 | Msa0695560 | 0.813323 | 2.712517e-51 | -8.615850e-47 |
| Msa0580990 | Msa0711010 | 0.831677 | 1.457335e-55 | -8.615850e-47 |
| Msa0580990 | Msa0749190 | 0.837214 | 5.930992e-57 | -8.615850e-47 |
| Msa0580990 | Msa0750520 | 0.829839 | 4.112065e-55 | -8.615850e-47 |
| Msa0580990 | Msa0751720 | 0.805609 | 1.229034e-49 | -8.615850e-47 |
| Msa0580990 | Msa0752230 | 0.872010 | 4.414906e-67 | -8.615850e-47 |
| Msa0580990 | Msa0827420 | 0.804339 | 2.265075e-49 | -8.615850e-47 |
| Msa0580990 | Msa0831820 | 0.830606 | 2.670784e-55 | -8.615850e-47 |
| Msa0580990 | Msa0841500 | 0.802810 | 4.702293e-49 | -8.615850e-47 |
| Msa0580990 | Msa0876630 | 0.825399 | 4.788956e-54 | -8.615850e-47 |
| Msa0580990 | Msa0900090 | 0.810187 | 1.305711e-50 | -8.615850e-47 |
| Msa0580990 | Msa0926760 | 0.828046 | 1.117700e-54 | -8.615850e-47 |
| Msa0580990 | Msa0965470 | 0.811161 | 8.039037e-51 | -8.615850e-47 |
| Msa0580990 | Msa0978980 | 0.815299 | 9.928227e-52 | -8.615850e-47 |
| Msa0580990 | Msa0999950 | 0.813817 | 2.112452e-51 | -8.615850e-47 |
| Msa0580990 | Msa1008850 | 0.818086 | 2.354705e-52 | -8.615850e-47 |
| Msa0580990 | Msa1071410 | 0.830427 | 2.954641e-55 | -8.615850e-47 |
| Msa0580990 | Msa1085680 | 0.804154 | 2.474979e-49 | -8.615850e-47 |
| Msa0580990 | Msa1106220 | 0.812003 | 5.275254e-51 | -8.615850e-47 |
| Msa0580990 | Msa1138800 | 0.803540 | 3.320442e-49 | -8.615850e-47 |
| Msa0580990 | Msa1144990 | 0.819552 | 1.093958e-52 | -8.615850e-47 |
| Msa0580990 | Msa1212700 | 0.823391 | 1.420285e-53 | -8.615850e-47 |
| Msa0580990 | Msa1212920 | 0.838420 | 2.905759e-57 | -8.615850e-47 |
| Msa0580990 | Msa1294790 | 0.807700 | 4.447026e-50 | -8.615850e-47 |
| Msa0580990 | Msa1331650 | 0.840417 | 8.807286e-58 | -8.615850e-47 |
| Msa0580990 | Msa1368170 | 0.810629 | 1.048022e-50 | -8.615850e-47 |
| Msa0580990 | Msa1372030 | 0.814222 | 1.719629e-51 | -8.615850e-47 |
| Msa0580990 | Msa1381800 | 0.828069 | 1.103208e-54 | -8.615850e-47 |
| Msa0580990 | Msa1424370 | 0.819670 | 1.027884e-52 | -8.615850e-47 |
| Msa0580990 | Msa1434640 | 0.813721 | 2.217815e-51 | -8.615850e-47 |
| Msa0580990 | Msa1443720 | 0.888148 | 7.634869e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580990 | MtrunA17_Chr5g0393711 | 98.521 | 338 | 5 | 0 | 3 | 340 | 7 | 344 | 0.0 | 700 |
| Msa0580990 | MtrunA17_Chr5g0418221 | 37.658 | 316 | 189 | 5 | 15 | 328 | 16 | 325 | 1.09e-67 | 215 |
| Msa0580990 | MtrunA17_Chr2g0278901 | 34.226 | 336 | 197 | 7 | 11 | 333 | 20 | 344 | 9.23e-64 | 206 |
| Msa0580990 | MtrunA17_Chr8g0367631 | 34.524 | 336 | 197 | 7 | 11 | 334 | 18 | 342 | 3.32e-63 | 204 |
| Msa0580990 | MtrunA17_Chr1g0198231 | 31.707 | 328 | 193 | 7 | 7 | 314 | 12 | 328 | 7.79e-48 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580990 | AT3G19590.1 | 84.706 | 340 | 52 | 0 | 1 | 340 | 1 | 340 | 0.0 | 615 |
| Msa0580990 | AT1G49910.1 | 85.119 | 336 | 50 | 0 | 3 | 338 | 2 | 337 | 0.0 | 608 |
| Msa0580990 | AT1G80670.1 | 35.821 | 335 | 192 | 8 | 11 | 333 | 19 | 342 | 1.95e-65 | 210 |
| Msa0580990 | AT1G69400.1 | 36.334 | 311 | 191 | 4 | 11 | 320 | 7 | 311 | 3.70e-64 | 206 |
| Msa0580990 | AT1G69400.2 | 37.037 | 243 | 147 | 3 | 11 | 253 | 7 | 243 | 3.04e-46 | 158 |
Find 116 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATATGCTTCTCGAAATT+TGG | 0.116715 | 4_1:-86269761 | Msa0580990:three_prime_UTR |
| TACCGGTAAGGAGGATATTT+TGG | 0.159397 | 4_1:-86273209 | Msa0580990:CDS |
| TTGGGAAGGGCTTTGGGTTT+TGG | 0.164675 | 4_1:+86270046 | None:intergenic |
| TGCAGGATTGGGAAGGGCTT+TGG | 0.197252 | 4_1:+86270039 | None:intergenic |
| TAACAGAGATACCTGTTCTT+AGG | 0.220195 | 4_1:-86269730 | Msa0580990:three_prime_UTR |
| ATACATGCTAGTTAACATTT+TGG | 0.252540 | 4_1:-86269878 | Msa0580990:three_prime_UTR |
| GTGGAATGCCATGGCATTTA+CGG | 0.284148 | 4_1:+86271424 | None:intergenic |
| ATTTCCCTCTTTGTTGTGTT+TGG | 0.287524 | 4_1:-86273611 | Msa0580990:five_prime_UTR |
| GTGTACTTTGTTCACATCTT+TGG | 0.299055 | 4_1:-86269952 | Msa0580990:three_prime_UTR |
| TGCTTCCATGACGACTCTTC+TGG | 0.306220 | 4_1:-86273358 | Msa0580990:CDS |
| GCAGGATTGGGAAGGGCTTT+GGG | 0.318991 | 4_1:+86270040 | None:intergenic |
| TACAGTTTACCTGTTCCATT+TGG | 0.330327 | 4_1:+86271953 | None:intergenic |
| GAAGATTCCCTTCGTTGTTC+AGG | 0.332221 | 4_1:+86272010 | None:intergenic |
| ACTCACTACCTATCTAATCT+AGG | 0.356957 | 4_1:+86273584 | None:intergenic |
| GTTTACTCTCTATCTCTTGT+TGG | 0.372907 | 4_1:-86272100 | Msa0580990:CDS |
| ATCATCTTCTCGTCTCCTCT+TGG | 0.379669 | 4_1:-86273462 | Msa0580990:CDS |
| TCCCAAAATATCCTCCTTAC+CGG | 0.391787 | 4_1:+86273207 | None:intergenic |
| GTTGTGAATACTTACGGTTT+AGG | 0.392170 | 4_1:+86270247 | None:intergenic |
| TGGAATGCCATGGCATTTAC+GGG | 0.398545 | 4_1:+86271425 | None:intergenic |
| GATAGAGAGTAAACACGTTC+AGG | 0.399955 | 4_1:+86272109 | None:intergenic |
| AGTGAATCACGCTGCAGGAT+TGG | 0.403543 | 4_1:+86270027 | None:intergenic |
| CGTGAAGGAACTCACCTCTA+AGG | 0.414200 | 4_1:+86273401 | None:intergenic |
| GTGAATCACGCTGCAGGATT+GGG | 0.415119 | 4_1:+86270028 | None:intergenic |
| GCAACCGCTGATGTCCTTAG+AGG | 0.424329 | 4_1:-86273415 | Msa0580990:CDS |
| TGGGTAGCAGCGTACACATC+TGG | 0.426524 | 4_1:+86271973 | None:intergenic |
| CGCTGCTACCCAAATGGAAC+AGG | 0.433713 | 4_1:-86271962 | Msa0580990:intron |
| TCTTGTCCACTTGCACCTCT+AGG | 0.434348 | 4_1:+86272160 | None:intergenic |
| TGACCGTCTGACAGTGTTAT+CGG | 0.437288 | 4_1:+86273321 | None:intergenic |
| GGGATAAAACCATAAAATGT+TGG | 0.442375 | 4_1:-86272186 | Msa0580990:CDS |
| GCAATTGATCACTGGAAGTT+GGG | 0.444451 | 4_1:-86272206 | Msa0580990:CDS |
| TCATCTTCTCGTCTCCTCTT+GGG | 0.446872 | 4_1:-86273461 | Msa0580990:CDS |
| GGCAATTGATCACTGGAAGT+TGG | 0.450395 | 4_1:-86272207 | Msa0580990:CDS |
| GGATAAAACCATAAAATGTT+GGG | 0.457603 | 4_1:-86272185 | Msa0580990:CDS |
| TGACCTATCTGAGGCTAGCC+AGG | 0.461002 | 4_1:-86271617 | Msa0580990:CDS |
| ACGGAGTAGTCCCTAAGAAC+AGG | 0.467630 | 4_1:+86269719 | None:intergenic |
| CTCTATCTCTTGTTGGACAT+CGG | 0.475750 | 4_1:-86272093 | Msa0580990:CDS |
| ACAACAAATATTTACAATGA+AGG | 0.476560 | 4_1:+86269828 | None:intergenic |
| AACAGAGATACCTGTTCTTA+GGG | 0.477008 | 4_1:-86269729 | Msa0580990:three_prime_UTR |
| AAAATCAATACTTCTTTGCC+TGG | 0.480508 | 4_1:+86271599 | None:intergenic |
| GGACAAGAGCGTACTCTAGT+TGG | 0.480881 | 4_1:-86272145 | Msa0580990:CDS |
| ACAGTTTACCTGTTCCATTT+GGG | 0.482139 | 4_1:+86271954 | None:intergenic |
| TGTGTACGCTGCTACCCAAA+TGG | 0.483373 | 4_1:-86271968 | Msa0580990:CDS |
| TCACAACATTAGTCTACCTT+GGG | 0.483597 | 4_1:+86269920 | None:intergenic |
| CTTAGAGGTGAGTTCCTTCA+CGG | 0.487170 | 4_1:-86273400 | Msa0580990:CDS |
| GAGAGTGCAGCAATGCTACT+TGG | 0.487185 | 4_1:+86270328 | None:intergenic |
| AATCCTGCAGCGTGATTCAC+TGG | 0.488528 | 4_1:-86270025 | Msa0580990:exon |
| TTCACAACATTAGTCTACCT+TGG | 0.489834 | 4_1:+86269919 | None:intergenic |
| TGGAAGCAACAGTCAAGAAC+AGG | 0.493479 | 4_1:+86273373 | None:intergenic |
| TTGCCTGGCTAGCCTCAGAT+AGG | 0.496802 | 4_1:+86271614 | None:intergenic |
| ATGTTCGAGATTCCGTCTGA+TGG | 0.502489 | 4_1:+86273505 | None:intergenic |
| GACAAGAGCGTACTCTAGTT+GGG | 0.502955 | 4_1:-86272144 | Msa0580990:CDS |
| CTTGTCCACTTGCACCTCTA+GGG | 0.505930 | 4_1:+86272161 | None:intergenic |
| TTGGAAACCCTAGATTAGAT+AGG | 0.511642 | 4_1:-86273592 | Msa0580990:five_prime_UTR |
| TCTCGACCGGCGGATACCAC+TGG | 0.514276 | 4_1:+86273541 | None:intergenic |
| TGTTGAAGGGCGGGTTGCAA+TGG | 0.517015 | 4_1:-86271647 | Msa0580990:CDS |
| GAGTACTCAACACAACGAAC+AGG | 0.517820 | 4_1:+86273172 | None:intergenic |
| TATGCTCTTAGTTCTGTTGA+AGG | 0.518025 | 4_1:-86271661 | Msa0580990:CDS |
| GAACCAGTGAATCACGCTGC+AGG | 0.520926 | 4_1:+86270022 | None:intergenic |
| GCACTCTCGTTTAGCAGAGA+TGG | 0.522542 | 4_1:-86270313 | Msa0580990:CDS |
| TCTTAGTTCTGTTGAAGGGC+GGG | 0.525855 | 4_1:-86271656 | Msa0580990:CDS |
| CGTAGATAGCATCTTGGTCA+TGG | 0.526895 | 4_1:+86270098 | None:intergenic |
| TGTCATAGAAAATCTGAAGC+TGG | 0.530953 | 4_1:-86271464 | Msa0580990:CDS |
| CAAGAACAGGTCCGCCGTGA+AGG | 0.534963 | 4_1:+86273386 | None:intergenic |
| TAGAAAATCTGAAGCTGGAA+GGG | 0.537950 | 4_1:-86271459 | Msa0580990:CDS |
| CTCTTAGTTCTGTTGAAGGG+CGG | 0.540304 | 4_1:-86271657 | Msa0580990:CDS |
| CACGCGACCCAAACAAACAC+GGG | 0.540738 | 4_1:+86273657 | None:intergenic |
| GTTGAGTACTCCTACGCCGC+AGG | 0.544652 | 4_1:-86273160 | Msa0580990:intron |
| CTCACTACCTATCTAATCTA+GGG | 0.550070 | 4_1:+86273585 | None:intergenic |
| CTGAAAACACTTACATGGGG+TGG | 0.550167 | 4_1:+86271405 | None:intergenic |
| CGGCTTGTAGTAGCAACAGC+TGG | 0.551056 | 4_1:-86272073 | Msa0580990:CDS |
| ATAGAAAATCTGAAGCTGGA+AGG | 0.551824 | 4_1:-86271460 | Msa0580990:CDS |
| ATTATAGGGCAATTGATCAC+TGG | 0.555294 | 4_1:-86272214 | Msa0580990:intron |
| CAACAAATATTTACAATGAA+GGG | 0.557765 | 4_1:+86269829 | None:intergenic |
| TTCGAGATTCCGTCTGATGG+AGG | 0.561551 | 4_1:+86273508 | None:intergenic |
| TTGCTGTGTTGTAAAGACCC+AGG | 0.563747 | 4_1:-86269806 | Msa0580990:three_prime_UTR |
| TCGAGATTCCGTCTGATGGA+GGG | 0.571433 | 4_1:+86273509 | None:intergenic |
| AAGTAAGTAACCTGCGGCGT+AGG | 0.571654 | 4_1:+86273150 | None:intergenic |
| TGCGAACGTAGATAGCATCT+TGG | 0.573621 | 4_1:+86270092 | None:intergenic |
| AGGGTTTGTTAACTCTCGAC+CGG | 0.575778 | 4_1:+86273528 | None:intergenic |
| ATGCTCTTAGTTCTGTTGAA+GGG | 0.579584 | 4_1:-86271660 | Msa0580990:CDS |
| ATCACGCTGCAGGATTGGGA+AGG | 0.587120 | 4_1:+86270032 | None:intergenic |
| CGTCTATCCCGTAAATGCCA+TGG | 0.598810 | 4_1:-86271432 | Msa0580990:CDS |
| TGTAACTTGATGCAACAGCT+AGG | 0.599050 | 4_1:+86270284 | None:intergenic |
| ACAGGTATCTCTGTTAGAGA+TGG | 0.601076 | 4_1:+86269737 | None:intergenic |
| GTCTTGTCCTGAACAACGAA+GGG | 0.604426 | 4_1:-86272017 | Msa0580990:CDS |
| ACGTTAATGTTTATGACATG+AGG | 0.606508 | 4_1:-86272045 | Msa0580990:CDS |
| TGAAACCAGAAGAGTCGTCA+TGG | 0.608860 | 4_1:+86273353 | None:intergenic |
| GGAATTCTTTGACCTATCTG+AGG | 0.609008 | 4_1:-86271626 | Msa0580990:CDS |
| TGCTGTGTTGTAAAGACCCA+GGG | 0.609828 | 4_1:-86269805 | Msa0580990:three_prime_UTR |
| TCACGCTGCAGGATTGGGAA+GGG | 0.611093 | 4_1:+86270033 | None:intergenic |
| ACACGCGACCCAAACAAACA+CGG | 0.615363 | 4_1:+86273656 | None:intergenic |
| GTTTCCAAACACAACAAAGA+GGG | 0.617826 | 4_1:+86273607 | None:intergenic |
| AGATATGGTACATTTGCCAC+AGG | 0.618381 | 4_1:-86270509 | Msa0580990:CDS |
| TTACATGGGGTGGAATGCCA+TGG | 0.620444 | 4_1:+86271415 | None:intergenic |
| TTTGCCACAGGAGGTTGTGA+CGG | 0.624438 | 4_1:-86270497 | Msa0580990:CDS |
| ATAGTAGCAGTAGTCACCCT+GGG | 0.626060 | 4_1:+86269789 | None:intergenic |
| TGTCTTGTCCTGAACAACGA+AGG | 0.627385 | 4_1:-86272018 | Msa0580990:CDS |
| TATGGTACATTTGCCACAGG+AGG | 0.632539 | 4_1:-86270506 | Msa0580990:CDS |
| GCAACACCAGTGGTATCCGC+CGG | 0.635006 | 4_1:-86273547 | Msa0580990:CDS |
| AATAGTAGCAGTAGTCACCC+TGG | 0.638455 | 4_1:+86269788 | None:intergenic |
| TGGGACCCTAGAGGTGCAAG+TGG | 0.639134 | 4_1:-86272166 | Msa0580990:CDS |
| GGTTTCCAAACACAACAAAG+AGG | 0.648548 | 4_1:+86273606 | None:intergenic |
| TTAACAAACCCTCCATCAGA+CGG | 0.649038 | 4_1:-86273517 | Msa0580990:CDS |
| AAAACCGTCACAACCTCCTG+TGG | 0.649987 | 4_1:+86270493 | None:intergenic |
| GTTTGTTAACTCTCGACCGG+CGG | 0.651310 | 4_1:+86273531 | None:intergenic |
| CTCAACAATGGCAACACCAG+TGG | 0.659385 | 4_1:-86273557 | Msa0580990:exon |
| TCTTTGGTATGAACATCCCA+AGG | 0.659765 | 4_1:-86269936 | Msa0580990:three_prime_UTR |
| TAGTGAGTTCAACTCAACAA+TGG | 0.664816 | 4_1:-86273569 | Msa0580990:exon |
| AACTTGATGCAACAGCTAGG+AGG | 0.684112 | 4_1:+86270287 | None:intergenic |
| CCGCCGATAACACTGTCAGA+CGG | 0.721323 | 4_1:-86273324 | Msa0580990:intron |
| CCGTCTGACAGTGTTATCGG+CGG | 0.724491 | 4_1:+86273324 | None:intergenic |
| AGAGGTGAGTTCCTTCACGG+CGG | 0.725492 | 4_1:-86273397 | Msa0580990:CDS |
| ATAAAATGTTGGGACCCTAG+AGG | 0.729323 | 4_1:-86272175 | Msa0580990:CDS |
| ACGCGACCCAAACAAACACG+GGG | 0.732425 | 4_1:+86273658 | None:intergenic |
| CTCACCTCTAAGGACATCAG+CGG | 0.748654 | 4_1:+86273411 | None:intergenic |
| AGACGAGAAGATGATCACTG+TGG | 0.796510 | 4_1:+86273470 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTGAAAAAACT+TGG | - | chr4_1:86270635-86270654 | Msa0580990:intron | 10.0% |
| !!! | TTTTTTTTTTGAAAAAACTT+GGG | - | chr4_1:86270636-86270655 | Msa0580990:intron | 10.0% |
| !!! | TTAAAATTTAAAACAAATTG+TGG | - | chr4_1:86272107-86272126 | Msa0580990:CDS | 10.0% |
| !! | TCTAAATTAACACATATAAT+TGG | + | chr4_1:86270355-86270374 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGAAAAAACTTG+GGG | - | chr4_1:86270637-86270656 | Msa0580990:intron | 15.0% |
| !! | TTTGTAAGGAATAATAATTA+AGG | - | chr4_1:86270929-86270948 | Msa0580990:intron | 15.0% |
| !!! | TATTTGGTTTAGAAATTAAA+TGG | - | chr4_1:86272300-86272319 | Msa0580990:intron | 15.0% |
| !! | TAAGGAATCTTATTAATAAA+AGG | - | chr4_1:86272695-86272714 | Msa0580990:intron | 15.0% |
| !! | CTAATAAATTAGTGATAATT+GGG | + | chr4_1:86272820-86272839 | None:intergenic | 15.0% |
| !! | ACTAATAAATTAGTGATAAT+TGG | + | chr4_1:86272821-86272840 | None:intergenic | 15.0% |
| !!! | TATTTTTCAAAATTACTATC+AGG | + | chr4_1:86273437-86273456 | None:intergenic | 15.0% |
| !! | AATCAGAAAATATATACTAG+TGG | + | chr4_1:86270491-86270510 | None:intergenic | 20.0% |
| !! | AGTTACAAAGAAAATTCAAA+TGG | - | chr4_1:86270802-86270821 | Msa0580990:intron | 20.0% |
| !! | GTTACAAAGAAAATTCAAAT+GGG | - | chr4_1:86270803-86270822 | Msa0580990:intron | 20.0% |
| !! | ATATTATTATTTCCGTTCAA+AGG | - | chr4_1:86271098-86271117 | Msa0580990:intron | 20.0% |
| !!! | TTTAACTTATCCATCATTAT+AGG | - | chr4_1:86271205-86271224 | Msa0580990:intron | 20.0% |
| !! | TTAACTTATCCATCATTATA+GGG | - | chr4_1:86271206-86271225 | Msa0580990:intron | 20.0% |
| !!! | AAAAAACAACAATTTTGAAG+TGG | + | chr4_1:86271884-86271903 | None:intergenic | 20.0% |
| !! | TTATCAATAACATGTATGAA+AGG | + | chr4_1:86272273-86272292 | None:intergenic | 20.0% |
| !!! | TATTGATAATCATGACTATT+TGG | - | chr4_1:86272284-86272303 | Msa0580990:intron | 20.0% |
| !! | AATAAGATTCCTTATATTCA+AGG | + | chr4_1:86272689-86272708 | None:intergenic | 20.0% |
| !! | CAACAAATATTTACAATGAA+GGG | + | chr4_1:86273608-86273627 | None:intergenic | 20.0% |
| !! | ACAACAAATATTTACAATGA+AGG | + | chr4_1:86273609-86273628 | None:intergenic | 20.0% |
| ! | ACTAACTAACAAAAGAACAA+TGG | + | chr4_1:86270162-86270181 | None:intergenic | 25.0% |
| ! | TTAGCAGTTTGAAAGAAAAA+AGG | + | chr4_1:86270332-86270351 | None:intergenic | 25.0% |
| !! | TGAGTTTTCAGTGTTAAAAA+GGG | + | chr4_1:86270577-86270596 | None:intergenic | 25.0% |
| !! | TTGAGTTTTCAGTGTTAAAA+AGG | + | chr4_1:86270578-86270597 | None:intergenic | 25.0% |
| ! | GGATAAAACCATAAAATGTT+GGG | - | chr4_1:86271249-86271268 | Msa0580990:intron | 25.0% |
| !! | GGAATAATTTGCAAAACTTA+TGG | - | chr4_1:86271520-86271539 | Msa0580990:intron | 25.0% |
| ! | AATTTGCAAAACTTATGGTT+TGG | - | chr4_1:86271525-86271544 | Msa0580990:intron | 25.0% |
| !! | TTGAAATTTTCATCAAATGC+TGG | - | chr4_1:86271574-86271593 | Msa0580990:intron | 25.0% |
| !!! | AAAACAAATTGTGGTTTTAG+TGG | - | chr4_1:86272116-86272135 | Msa0580990:CDS | 25.0% |
| ! | AAATTAAATGGTTGCAAGTT+GGG | - | chr4_1:86272312-86272331 | Msa0580990:intron | 25.0% |
| ! | TAATTCTAACCATCCAATTT+CGG | + | chr4_1:86272569-86272588 | None:intergenic | 25.0% |
| ! | TAGAAAGAACAATGTATTCA+AGG | + | chr4_1:86272730-86272749 | None:intergenic | 25.0% |
| ! | AATTAACAACAGATTAGAGA+GGG | + | chr4_1:86273306-86273325 | None:intergenic | 25.0% |
| ! | AAATTAACAACAGATTAGAG+AGG | + | chr4_1:86273307-86273326 | None:intergenic | 25.0% |
| !! | ATACATGCTAGTTAACATTT+TGG | - | chr4_1:86273556-86273575 | Msa0580990:exon | 25.0% |
| !!! | GGGGTTTTTGTTTTTGTTTT+AGG | + | chr4_1:86269760-86269779 | None:intergenic | 30.0% |
| TAACAAAAGAACAATGGATC+TGG | + | chr4_1:86270156-86270175 | None:intergenic | 30.0% | |
| ATAAGTAAGTAAGTAACCTG+CGG | + | chr4_1:86270293-86270312 | None:intergenic | 30.0% | |
| !! | TTTTTGAAAAAACTTGGGGA+AGG | - | chr4_1:86270641-86270660 | Msa0580990:intron | 30.0% |
| !! | TTTTGAAAAAACTTGGGGAA+GGG | - | chr4_1:86270642-86270661 | Msa0580990:intron | 30.0% |
| !! | TTGACTTGTAAGTAACTTCA+AGG | + | chr4_1:86270740-86270759 | None:intergenic | 30.0% |
| ! | AAAATCAGTTTTCGCTAATC+TGG | + | chr4_1:86270773-86270792 | None:intergenic | 30.0% |
| !!! | GGTTTTAAACTTGATTCTCA+AGG | + | chr4_1:86271012-86271031 | None:intergenic | 30.0% |
| ACCAACGATGATAACATATT+TGG | - | chr4_1:86271029-86271048 | Msa0580990:intron | 30.0% | |
| ACCAAATATGTTATCATCGT+TGG | + | chr4_1:86271033-86271052 | None:intergenic | 30.0% | |
| GAAGTTTGACTATTGACAAT+GGG | - | chr4_1:86271176-86271195 | Msa0580990:intron | 30.0% | |
| GGGATAAAACCATAAAATGT+TGG | - | chr4_1:86271248-86271267 | Msa0580990:intron | 30.0% | |
| ACGTTAATGTTTATGACATG+AGG | - | chr4_1:86271389-86271408 | Msa0580990:intron | 30.0% | |
| ! | GCACTATTATTGATTGAAAG+AGG | - | chr4_1:86271643-86271662 | Msa0580990:CDS | 30.0% |
| ! | ATATCCTGCAAAAAGTATGT+GGG | + | chr4_1:86271756-86271775 | None:intergenic | 30.0% |
| AAAATCAATACTTCTTTGCC+TGG | + | chr4_1:86271838-86271857 | None:intergenic | 30.0% | |
| TTTAGCATGCTAGTGAATTA+AGG | + | chr4_1:86272082-86272101 | None:intergenic | 30.0% | |
| TATCAGCTATTTATGTTCTC+TGG | - | chr4_1:86272155-86272174 | Msa0580990:CDS | 30.0% | |
| ATCAGCTATTTATGTTCTCT+GGG | - | chr4_1:86272156-86272175 | Msa0580990:CDS | 30.0% | |
| AATTATCAGTGTCCATTCTT+TGG | + | chr4_1:86272183-86272202 | None:intergenic | 30.0% | |
| GAAATTAAATGGTTGCAAGT+TGG | - | chr4_1:86272311-86272330 | Msa0580990:intron | 30.0% | |
| !! | GTCATTTTCTAGTCGATTTT+TGG | + | chr4_1:86272400-86272419 | None:intergenic | 30.0% |
| AAATCGACTAGAAAATGACT+AGG | - | chr4_1:86272401-86272420 | Msa0580990:intron | 30.0% | |
| GAATGATACAAATCCTAGAA+TGG | + | chr4_1:86272504-86272523 | None:intergenic | 30.0% | |
| TAATATCCTCATGTCATCTT+TGG | + | chr4_1:86272533-86272552 | None:intergenic | 30.0% | |
| ACATGAGGATATTACACTTA+AGG | - | chr4_1:86272539-86272558 | Msa0580990:intron | 30.0% | |
| CATGAGGATATTACACTTAA+GGG | - | chr4_1:86272540-86272559 | Msa0580990:intron | 30.0% | |
| TATTACATTGTTGTACGAGT+GGG | + | chr4_1:86272608-86272627 | None:intergenic | 30.0% | |
| TCGTACAACAATGTAATAGT+TGG | - | chr4_1:86272610-86272629 | Msa0580990:intron | 30.0% | |
| TGCTAAACACCTTGAATATA+AGG | - | chr4_1:86272677-86272696 | Msa0580990:intron | 30.0% | |
| ! | AGTTAGTTGTGATTGATAGT+TGG | + | chr4_1:86272785-86272804 | None:intergenic | 30.0% |
| GAAAAATCTTCATGCAGATA+TGG | - | chr4_1:86272910-86272929 | Msa0580990:intron | 30.0% | |
| TAGAGATCAGATTCTTCTTA+TGG | - | chr4_1:86273033-86273052 | Msa0580990:intron | 30.0% | |
| TTGAATACTGCAAGGATAAA+TGG | + | chr4_1:86273081-86273100 | None:intergenic | 30.0% | |
| !! | TGGATATTTTGAATACTGCA+AGG | + | chr4_1:86273089-86273108 | None:intergenic | 30.0% |
| !! | ATCAAGTTACACTTTTGAAG+AGG | - | chr4_1:86273162-86273181 | Msa0580990:CDS | 30.0% |
| !! | TCAAGTTACACTTTTGAAGA+GGG | - | chr4_1:86273163-86273182 | Msa0580990:CDS | 30.0% |
| TTGATATGCTTCTCGAAATT+TGG | - | chr4_1:86273673-86273692 | Msa0580990:five_prime_UTR | 30.0% | |
| ! | ATTTCCCTCTTTGTTGTGTT+TGG | - | chr4_1:86269823-86269842 | Msa0580990:three_prime_UTR | 35.0% |
| GTTTCCAAACACAACAAAGA+GGG | + | chr4_1:86269830-86269849 | None:intergenic | 35.0% | |
| TTGGAAACCCTAGATTAGAT+AGG | - | chr4_1:86269842-86269861 | Msa0580990:three_prime_UTR | 35.0% | |
| CTCACTACCTATCTAATCTA+GGG | + | chr4_1:86269852-86269871 | None:intergenic | 35.0% | |
| ACTCACTACCTATCTAATCT+AGG | + | chr4_1:86269853-86269872 | None:intergenic | 35.0% | |
| TAGTGAGTTCAACTCAACAA+TGG | - | chr4_1:86269865-86269884 | Msa0580990:three_prime_UTR | 35.0% | |
| ! | GATATGTTTTACCAAGACAG+CGG | + | chr4_1:86270421-86270440 | None:intergenic | 35.0% |
| AGCTAGAAACTGCAATGAAT+AGG | + | chr4_1:86270551-86270570 | None:intergenic | 35.0% | |
| TTTGAAAAAACTTGGGGAAG+GGG | - | chr4_1:86270643-86270662 | Msa0580990:intron | 35.0% | |
| AATAGAGTTCAAATCTCCAC+GGG | + | chr4_1:86270717-86270736 | None:intergenic | 35.0% | |
| GAATAGAGTTCAAATCTCCA+CGG | + | chr4_1:86270718-86270737 | None:intergenic | 35.0% | |
| CTTACAAAGAATATCACACG+AGG | + | chr4_1:86270917-86270936 | None:intergenic | 35.0% | |
| CTCGTGTGATATTCTTTGTA+AGG | - | chr4_1:86270915-86270934 | Msa0580990:intron | 35.0% | |
| ! | TGATTCTCAAGGCACATTTT+AGG | + | chr4_1:86271001-86271020 | None:intergenic | 35.0% |
| AGAATGATGACTCCTTTGAA+CGG | + | chr4_1:86271113-86271132 | None:intergenic | 35.0% | |
| TGCAATTCTTGTCATTGTCA+TGG | + | chr4_1:86271144-86271163 | None:intergenic | 35.0% | |
| AAGAATTGCAGCTTATTTGC+TGG | - | chr4_1:86271154-86271173 | Msa0580990:intron | 35.0% | |
| GGAAGTTTGACTATTGACAA+TGG | - | chr4_1:86271175-86271194 | Msa0580990:intron | 35.0% | |
| GATCAATTGCCCTATAATGA+TGG | + | chr4_1:86271218-86271237 | None:intergenic | 35.0% | |
| ATTATAGGGCAATTGATCAC+TGG | - | chr4_1:86271220-86271239 | Msa0580990:intron | 35.0% | |
| GTTTACTCTCTATCTCTTGT+TGG | - | chr4_1:86271334-86271353 | Msa0580990:intron | 35.0% | |
| ACAGTTTACCTGTTCCATTT+GGG | + | chr4_1:86271483-86271502 | None:intergenic | 35.0% | |
| TACAGTTTACCTGTTCCATT+TGG | + | chr4_1:86271484-86271503 | None:intergenic | 35.0% | |
| ! | CTGTAGTGTATGTGTGATTT+TGG | - | chr4_1:86271499-86271518 | Msa0580990:intron | 35.0% |
| !! | GTTGAGTTTCTTAGCTTTGA+TGG | - | chr4_1:86271688-86271707 | Msa0580990:intron | 35.0% |
| TATGTGGGATATGAACATCA+AGG | + | chr4_1:86271741-86271760 | None:intergenic | 35.0% | |
| !! | ATATCCCACATACTTTTTGC+AGG | - | chr4_1:86271749-86271768 | Msa0580990:intron | 35.0% |
| ! | CATATCCTGCAAAAAGTATG+TGG | + | chr4_1:86271757-86271776 | None:intergenic | 35.0% |
| !! | TATGCTCTTAGTTCTGTTGA+AGG | - | chr4_1:86271773-86271792 | Msa0580990:intron | 35.0% |
| !! | ATGCTCTTAGTTCTGTTGAA+GGG | - | chr4_1:86271774-86271793 | Msa0580990:intron | 35.0% |
| GTAGAGTTTAGAAGCAAATG+AGG | + | chr4_1:86271933-86271952 | None:intergenic | 35.0% | |
| TTTGCTTCTAAACTCTACAC+AGG | - | chr4_1:86271935-86271954 | Msa0580990:intron | 35.0% | |
| ! | TGTCATAGAAAATCTGAAGC+TGG | - | chr4_1:86271970-86271989 | Msa0580990:CDS | 35.0% |
| ! | ATAGAAAATCTGAAGCTGGA+AGG | - | chr4_1:86271974-86271993 | Msa0580990:CDS | 35.0% |
| ! | TAGAAAATCTGAAGCTGGAA+GGG | - | chr4_1:86271975-86271994 | Msa0580990:CDS | 35.0% |
| AACCTGAAAACACTTACATG+GGG | + | chr4_1:86272035-86272054 | None:intergenic | 35.0% | |
| GAACCTGAAAACACTTACAT+GGG | + | chr4_1:86272036-86272055 | None:intergenic | 35.0% | |
| AGAACCTGAAAACACTTACA+TGG | + | chr4_1:86272037-86272056 | None:intergenic | 35.0% | |
| ATTCACTAGCATGCTAAAGA+AGG | - | chr4_1:86272084-86272103 | Msa0580990:CDS | 35.0% | |
| GACACTGATAATTACCACAA+TGG | - | chr4_1:86272190-86272209 | Msa0580990:CDS | 35.0% | |
| CATCCTAACTGAATGTTGAT+AGG | - | chr4_1:86272347-86272366 | Msa0580990:intron | 35.0% | |
| GATCCTATCAACATTCAGTT+AGG | + | chr4_1:86272353-86272372 | None:intergenic | 35.0% | |
| GGAGATATTACGAATGTCAT+TGG | - | chr4_1:86272422-86272441 | Msa0580990:intron | 35.0% | |
| !! | AATCCTAGAATGGTACTGAT+AGG | + | chr4_1:86272494-86272513 | None:intergenic | 35.0% |
| CTATTACATTGTTGTACGAG+TGG | + | chr4_1:86272609-86272628 | None:intergenic | 35.0% | |
| TGGTGTAATAAGAACCAATC+TGG | - | chr4_1:86272630-86272649 | Msa0580990:intron | 35.0% | |
| GGTGTAATAAGAACCAATCT+GGG | - | chr4_1:86272631-86272650 | Msa0580990:intron | 35.0% | |
| GTGTAATAAGAACCAATCTG+GGG | - | chr4_1:86272632-86272651 | Msa0580990:intron | 35.0% | |
| TGTAATAAGAACCAATCTGG+GGG | - | chr4_1:86272633-86272652 | Msa0580990:intron | 35.0% | |
| AGCAGTATCAACATACTAAC+TGG | - | chr4_1:86272841-86272860 | Msa0580990:intron | 35.0% | |
| !!! | TGACGGTTTTGTTAACGTAT+GGG | - | chr4_1:86272954-86272973 | Msa0580990:intron | 35.0% |
| CTGATCTCTAAATTTACTCG+AGG | + | chr4_1:86273023-86273042 | None:intergenic | 35.0% | |
| GTTGTGAATACTTACGGTTT+AGG | + | chr4_1:86273190-86273209 | None:intergenic | 35.0% | |
| ATGGGAGTTGTGAATACTTA+CGG | + | chr4_1:86273196-86273215 | None:intergenic | 35.0% | |
| GTGTACTTTGTTCACATCTT+TGG | - | chr4_1:86273482-86273501 | Msa0580990:CDS | 35.0% | |
| ! | TCACAACATTAGTCTACCTT+GGG | + | chr4_1:86273517-86273536 | None:intergenic | 35.0% |
| ! | TTCACAACATTAGTCTACCT+TGG | + | chr4_1:86273518-86273537 | None:intergenic | 35.0% |
| TAACAGAGATACCTGTTCTT+AGG | - | chr4_1:86273704-86273723 | Msa0580990:five_prime_UTR | 35.0% | |
| AACAGAGATACCTGTTCTTA+GGG | - | chr4_1:86273705-86273724 | Msa0580990:five_prime_UTR | 35.0% | |
| ACAAAAACCCCGTGTTTGTT+TGG | - | chr4_1:86269769-86269788 | Msa0580990:three_prime_UTR | 40.0% | |
| CAAAAACCCCGTGTTTGTTT+GGG | - | chr4_1:86269770-86269789 | Msa0580990:three_prime_UTR | 40.0% | |
| GGTTTCCAAACACAACAAAG+AGG | + | chr4_1:86269831-86269850 | None:intergenic | 40.0% | |
| TTAACAAACCCTCCATCAGA+CGG | - | chr4_1:86269917-86269936 | Msa0580990:three_prime_UTR | 40.0% | |
| !! | TGTAGCCTCATTTTTGCTAC+CGG | - | chr4_1:86270208-86270227 | Msa0580990:intron | 40.0% |
| ! | TACCGGTAAGGAGGATATTT+TGG | - | chr4_1:86270225-86270244 | Msa0580990:intron | 40.0% |
| ! | ACCGGTAAGGAGGATATTTT+GGG | - | chr4_1:86270226-86270245 | Msa0580990:intron | 40.0% |
| TCCCAAAATATCCTCCTTAC+CGG | + | chr4_1:86270230-86270249 | None:intergenic | 40.0% | |
| GATACAATATACCGCTGTCT+TGG | - | chr4_1:86270407-86270426 | Msa0580990:intron | 40.0% | |
| TCATTTAACAACTGTTCCCG+TGG | - | chr4_1:86270698-86270717 | Msa0580990:intron | 40.0% | |
| GCAATTGATCACTGGAAGTT+GGG | - | chr4_1:86271228-86271247 | Msa0580990:intron | 40.0% | |
| !! | TCTAGGGTCCCAACATTTTA+TGG | + | chr4_1:86271260-86271279 | None:intergenic | 40.0% |
| ATAAAATGTTGGGACCCTAG+AGG | - | chr4_1:86271259-86271278 | Msa0580990:intron | 40.0% | |
| GATAGAGAGTAAACACGTTC+AGG | + | chr4_1:86271328-86271347 | None:intergenic | 40.0% | |
| CTCTATCTCTTGTTGGACAT+CGG | - | chr4_1:86271341-86271360 | Msa0580990:intron | 40.0% | |
| GGAATTCTTTGACCTATCTG+AGG | - | chr4_1:86271808-86271827 | Msa0580990:intron | 40.0% | |
| GTCAGGAAACGATAATCTCT+TGG | - | chr4_1:86272218-86272237 | Msa0580990:intron | 40.0% | |
| ! | AAATGGTTGCAAGTTGGGAA+AGG | - | chr4_1:86272317-86272336 | Msa0580990:intron | 40.0% |
| TCTCCTATCAGTACCATTCT+AGG | - | chr4_1:86272488-86272507 | Msa0580990:intron | 40.0% | |
| AGAACACCAAAGATGACATG+AGG | - | chr4_1:86272524-86272543 | Msa0580990:intron | 40.0% | |
| CACTTAAGGGTTTCCGAAAT+TGG | - | chr4_1:86272553-86272572 | Msa0580990:intron | 40.0% | |
| TAAGGGTTTCCGAAATTGGA+TGG | - | chr4_1:86272557-86272576 | Msa0580990:intron | 40.0% | |
| !! | AGTGATAATTGGGTTAGCAG+CGG | + | chr4_1:86272810-86272829 | None:intergenic | 40.0% |
| AGATATGGTACATTTGCCAC+AGG | - | chr4_1:86272925-86272944 | Msa0580990:intron | 40.0% | |
| !!! | GTGACGGTTTTGTTAACGTA+TGG | - | chr4_1:86272953-86272972 | Msa0580990:intron | 40.0% |
| !!! | GGTTTTGTTAACGTATGGGA+CGG | - | chr4_1:86272958-86272977 | Msa0580990:intron | 40.0% |
| CAACAAAAAGAGGCTATACC+AGG | - | chr4_1:86272984-86273003 | Msa0580990:intron | 40.0% | |
| TGTAACTTGATGCAACAGCT+AGG | + | chr4_1:86273153-86273172 | None:intergenic | 40.0% | |
| AACAACAGATTAGAGAGGGA+GGG | + | chr4_1:86273302-86273321 | None:intergenic | 40.0% | |
| TAACAACAGATTAGAGAGGG+AGG | + | chr4_1:86273303-86273322 | None:intergenic | 40.0% | |
| TCTTTGGTATGAACATCCCA+AGG | - | chr4_1:86273498-86273517 | Msa0580990:CDS | 40.0% | |
| ACAGGTATCTCTGTTAGAGA+TGG | + | chr4_1:86273700-86273719 | None:intergenic | 40.0% | |
| !! | AGGGTTTGTTAACTCTCGAC+CGG | + | chr4_1:86269909-86269928 | None:intergenic | 45.0% |
| ATGTTCGAGATTCCGTCTGA+TGG | + | chr4_1:86269932-86269951 | None:intergenic | 45.0% | |
| AGACGAGAAGATGATCACTG+TGG | + | chr4_1:86269967-86269986 | None:intergenic | 45.0% | |
| ATCATCTTCTCGTCTCCTCT+TGG | - | chr4_1:86269972-86269991 | Msa0580990:three_prime_UTR | 45.0% | |
| TCATCTTCTCGTCTCCTCTT+GGG | - | chr4_1:86269973-86269992 | Msa0580990:three_prime_UTR | 45.0% | |
| !! | ACGAACAGTTTTGTCCCAAG+AGG | + | chr4_1:86269990-86270009 | None:intergenic | 45.0% |
| CTTAGAGGTGAGTTCCTTCA+CGG | - | chr4_1:86270034-86270053 | Msa0580990:CDS | 45.0% | |
| TGGAAGCAACAGTCAAGAAC+AGG | + | chr4_1:86270064-86270083 | None:intergenic | 45.0% | |
| TGAAACCAGAAGAGTCGTCA+TGG | + | chr4_1:86270084-86270103 | None:intergenic | 45.0% | |
| TGACCGTCTGACAGTGTTAT+CGG | + | chr4_1:86270116-86270135 | None:intergenic | 45.0% | |
| CCTTACCGGTAGCAAAAATG+AGG | + | chr4_1:86270216-86270235 | None:intergenic | 45.0% | |
| !! | CCTCATTTTTGCTACCGGTA+AGG | - | chr4_1:86270213-86270232 | Msa0580990:intron | 45.0% |
| ! | CATTTTTGCTACCGGTAAGG+AGG | - | chr4_1:86270216-86270235 | Msa0580990:intron | 45.0% |
| GAGTACTCAACACAACGAAC+AGG | + | chr4_1:86270265-86270284 | None:intergenic | 45.0% | |
| CACGCATGTGCAAACAAGTA+TGG | + | chr4_1:86270443-86270462 | None:intergenic | 45.0% | |
| GGCAATTGATCACTGGAAGT+TGG | - | chr4_1:86271227-86271246 | Msa0580990:intron | 45.0% | |
| ! | GACAAGAGCGTACTCTAGTT+GGG | - | chr4_1:86271290-86271309 | Msa0580990:intron | 45.0% |
| TGTCTTGTCCTGAACAACGA+AGG | - | chr4_1:86271416-86271435 | Msa0580990:intron | 45.0% | |
| GTCTTGTCCTGAACAACGAA+GGG | - | chr4_1:86271417-86271436 | Msa0580990:intron | 45.0% | |
| GAAGATTCCCTTCGTTGTTC+AGG | + | chr4_1:86271427-86271446 | None:intergenic | 45.0% | |
| !! | CTCTTAGTTCTGTTGAAGGG+CGG | - | chr4_1:86271777-86271796 | Msa0580990:intron | 45.0% |
| !! | TCTTAGTTCTGTTGAAGGGC+GGG | - | chr4_1:86271778-86271797 | Msa0580990:intron | 45.0% |
| TGGAATGCCATGGCATTTAC+GGG | + | chr4_1:86272012-86272031 | None:intergenic | 45.0% | |
| GTGGAATGCCATGGCATTTA+CGG | + | chr4_1:86272013-86272032 | None:intergenic | 45.0% | |
| CTGAAAACACTTACATGGGG+TGG | + | chr4_1:86272032-86272051 | None:intergenic | 45.0% | |
| ! | CACCCCATGTAAGTGTTTTC+AGG | - | chr4_1:86272030-86272049 | Msa0580990:CDS | 45.0% |
| TGTTCTCTGGGTCCAAAGAA+TGG | - | chr4_1:86272168-86272187 | Msa0580990:CDS | 45.0% | |
| TTACCACAATGGCTTGAGTC+AGG | - | chr4_1:86272201-86272220 | Msa0580990:CDS | 45.0% | |
| TTTCCTGACTCAAGCCATTG+TGG | + | chr4_1:86272207-86272226 | None:intergenic | 45.0% | |
| TATGGTACATTTGCCACAGG+AGG | - | chr4_1:86272928-86272947 | Msa0580990:intron | 45.0% | |
| GGGACGGAAACAACAAAAAG+AGG | - | chr4_1:86272974-86272993 | Msa0580990:intron | 45.0% | |
| CGAGGCAAATGAGAAAAACC+TGG | + | chr4_1:86273005-86273024 | None:intergenic | 45.0% | |
| AACTTGATGCAACAGCTAGG+AGG | + | chr4_1:86273150-86273169 | None:intergenic | 45.0% | |
| AGCGTGTGTGTGGAGAAAAT+GGG | + | chr4_1:86273214-86273233 | None:intergenic | 45.0% | |
| CGTAGATAGCATCTTGGTCA+TGG | + | chr4_1:86273339-86273358 | None:intergenic | 45.0% | |
| TGCGAACGTAGATAGCATCT+TGG | + | chr4_1:86273345-86273364 | None:intergenic | 45.0% | |
| TTGCTGTGTTGTAAAGACCC+AGG | - | chr4_1:86273628-86273647 | Msa0580990:five_prime_UTR | 45.0% | |
| TGCTGTGTTGTAAAGACCCA+GGG | - | chr4_1:86273629-86273648 | Msa0580990:five_prime_UTR | 45.0% | |
| ATAGTAGCAGTAGTCACCCT+GGG | + | chr4_1:86273648-86273667 | None:intergenic | 45.0% | |
| AATAGTAGCAGTAGTCACCC+TGG | + | chr4_1:86273649-86273668 | None:intergenic | 45.0% | |
| ACACGCGACCCAAACAAACA+CGG | + | chr4_1:86269781-86269800 | None:intergenic | 50.0% | |
| CTCAACAATGGCAACACCAG+TGG | - | chr4_1:86269877-86269896 | Msa0580990:three_prime_UTR | 50.0% | |
| ! | GTTTGTTAACTCTCGACCGG+CGG | + | chr4_1:86269906-86269925 | None:intergenic | 50.0% |
| TCGAGATTCCGTCTGATGGA+GGG | + | chr4_1:86269928-86269947 | None:intergenic | 50.0% | |
| TTCGAGATTCCGTCTGATGG+AGG | + | chr4_1:86269929-86269948 | None:intergenic | 50.0% | |
| ! | CTCACCTCTAAGGACATCAG+CGG | + | chr4_1:86270026-86270045 | None:intergenic | 50.0% |
| CGTGAAGGAACTCACCTCTA+AGG | + | chr4_1:86270036-86270055 | None:intergenic | 50.0% | |
| TGCTTCCATGACGACTCTTC+TGG | - | chr4_1:86270076-86270095 | Msa0580990:CDS | 50.0% | |
| AAGTAAGTAACCTGCGGCGT+AGG | + | chr4_1:86270287-86270306 | None:intergenic | 50.0% | |
| CGAGGCAATGCAAAACTGAC+TGG | + | chr4_1:86270899-86270918 | None:intergenic | 50.0% | |
| CTTGTCCACTTGCACCTCTA+GGG | + | chr4_1:86271276-86271295 | None:intergenic | 50.0% | |
| TCTTGTCCACTTGCACCTCT+AGG | + | chr4_1:86271277-86271296 | None:intergenic | 50.0% | |
| ! | GGACAAGAGCGTACTCTAGT+TGG | - | chr4_1:86271289-86271308 | Msa0580990:intron | 50.0% |
| TGTGTACGCTGCTACCCAAA+TGG | - | chr4_1:86271466-86271485 | Msa0580990:CDS | 50.0% | |
| CGTCTATCCCGTAAATGCCA+TGG | - | chr4_1:86272002-86272021 | Msa0580990:CDS | 50.0% | |
| TTACATGGGGTGGAATGCCA+TGG | + | chr4_1:86272022-86272041 | None:intergenic | 50.0% | |
| ! | GGTTGCAAGTTGGGAAAGGT+TGG | - | chr4_1:86272321-86272340 | Msa0580990:intron | 50.0% |
| GGACGAGGAAAGATGTGCAA+AGG | - | chr4_1:86272654-86272673 | Msa0580990:intron | 50.0% | |
| TTTGCCACAGGAGGTTGTGA+CGG | - | chr4_1:86272937-86272956 | Msa0580990:intron | 50.0% | |
| AAAACCGTCACAACCTCCTG+TGG | + | chr4_1:86272944-86272963 | None:intergenic | 50.0% | |
| ! | GAGAGTGCAGCAATGCTACT+TGG | + | chr4_1:86273109-86273128 | None:intergenic | 50.0% |
| GCACTCTCGTTTAGCAGAGA+TGG | - | chr4_1:86273121-86273140 | Msa0580990:intron | 50.0% | |
| GAGCGTGTGTGTGGAGAAAA+TGG | + | chr4_1:86273215-86273234 | None:intergenic | 50.0% | |
| ACAGATTAGAGAGGGAGGGA+GGG | + | chr4_1:86273298-86273317 | None:intergenic | 50.0% | |
| AACAGATTAGAGAGGGAGGG+AGG | + | chr4_1:86273299-86273318 | None:intergenic | 50.0% | |
| !!! | TTGGGAAGGGCTTTGGGTTT+TGG | + | chr4_1:86273391-86273410 | None:intergenic | 50.0% |
| GTGAATCACGCTGCAGGATT+GGG | + | chr4_1:86273409-86273428 | None:intergenic | 50.0% | |
| AGTGAATCACGCTGCAGGAT+TGG | + | chr4_1:86273410-86273429 | None:intergenic | 50.0% | |
| AATCCTGCAGCGTGATTCAC+TGG | - | chr4_1:86273409-86273428 | Msa0580990:CDS | 50.0% | |
| ACGCGACCCAAACAAACACG+GGG | + | chr4_1:86269779-86269798 | None:intergenic | 55.0% | |
| CACGCGACCCAAACAAACAC+GGG | + | chr4_1:86269780-86269799 | None:intergenic | 55.0% | |
| GCAACCGCTGATGTCCTTAG+AGG | - | chr4_1:86270019-86270038 | Msa0580990:exon | 55.0% | |
| AGAGGTGAGTTCCTTCACGG+CGG | - | chr4_1:86270037-86270056 | Msa0580990:CDS | 55.0% | |
| CCGTCTGACAGTGTTATCGG+CGG | + | chr4_1:86270113-86270132 | None:intergenic | 55.0% | |
| CCGCCGATAACACTGTCAGA+CGG | - | chr4_1:86270110-86270129 | Msa0580990:intron | 55.0% | |
| CGGCTTGTAGTAGCAACAGC+TGG | - | chr4_1:86271361-86271380 | Msa0580990:intron | 55.0% | |
| TGGGTAGCAGCGTACACATC+TGG | + | chr4_1:86271464-86271483 | None:intergenic | 55.0% | |
| CGCTGCTACCCAAATGGAAC+AGG | - | chr4_1:86271472-86271491 | Msa0580990:CDS | 55.0% | |
| !! | TGTTGAAGGGCGGGTTGCAA+TGG | - | chr4_1:86271787-86271806 | Msa0580990:intron | 55.0% |
| ! | TGACCTATCTGAGGCTAGCC+AGG | - | chr4_1:86271817-86271836 | Msa0580990:intron | 55.0% |
| !! | TTGCCTGGCTAGCCTCAGAT+AGG | + | chr4_1:86271823-86271842 | None:intergenic | 55.0% |
| AAGAACCAATCTGGGGGACG+AGG | - | chr4_1:86272639-86272658 | Msa0580990:intron | 55.0% | |
| TCTTTCCTCGTCCCCCAGAT+TGG | + | chr4_1:86272647-86272666 | None:intergenic | 55.0% | |
| ! | AGAGAGAGAGAGCGTGTGTG+TGG | + | chr4_1:86273224-86273243 | None:intergenic | 55.0% |
| ATTAGAGAGGGAGGGAGGGA+GGG | + | chr4_1:86273294-86273313 | None:intergenic | 55.0% | |
| GCAGGATTGGGAAGGGCTTT+GGG | + | chr4_1:86273397-86273416 | None:intergenic | 55.0% | |
| TGCAGGATTGGGAAGGGCTT+TGG | + | chr4_1:86273398-86273417 | None:intergenic | 55.0% | |
| TCACGCTGCAGGATTGGGAA+GGG | + | chr4_1:86273404-86273423 | None:intergenic | 55.0% | |
| ATCACGCTGCAGGATTGGGA+AGG | + | chr4_1:86273405-86273424 | None:intergenic | 55.0% | |
| GAACCAGTGAATCACGCTGC+AGG | + | chr4_1:86273415-86273434 | None:intergenic | 55.0% | |
| GCAACACCAGTGGTATCCGC+CGG | - | chr4_1:86269887-86269906 | Msa0580990:three_prime_UTR | 60.0% | |
| CAAGAACAGGTCCGCCGTGA+AGG | + | chr4_1:86270051-86270070 | None:intergenic | 60.0% | |
| GTTGAGTACTCCTACGCCGC+AGG | - | chr4_1:86270274-86270293 | Msa0580990:CDS | 60.0% | |
| ! | TGGGACCCTAGAGGTGCAAG+TGG | - | chr4_1:86271268-86271287 | Msa0580990:intron | 60.0% |
| GATTAGAGAGGGAGGGAGGG+AGG | + | chr4_1:86273295-86273314 | None:intergenic | 60.0% | |
| TCTCGACCGGCGGATACCAC+TGG | + | chr4_1:86269896-86269915 | None:intergenic | 65.0% | |
| GAGAGGGAGGGAGGGAGGGA+GGG | + | chr4_1:86273290-86273309 | None:intergenic | 70.0% | |
| AGAGAGGGAGGGAGGGAGGG+AGG | + | chr4_1:86273291-86273310 | None:intergenic | 70.0% | |
| AGGGAGGGAGGGAGGGAGGG+AGG | + | chr4_1:86273287-86273306 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 86269721 | 86273735 | 86269721 | ID=Msa0580990;Name=Msa0580990 |
| chr4_1 | mRNA | 86269721 | 86273735 | 86269721 | ID=Msa0580990-mRNA-1;Parent=Msa0580990;Name=Msa0580990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=163|1|1|1|1|1|8|312|340 |
| chr4_1 | exon | 86269721 | 86270120 | 86269721 | ID=Msa0580990-mRNA-1:exon:31863;Parent=Msa0580990-mRNA-1 |
| chr4_1 | exon | 86270262 | 86270362 | 86270262 | ID=Msa0580990-mRNA-1:exon:31862;Parent=Msa0580990-mRNA-1 |
| chr4_1 | exon | 86270451 | 86270529 | 86270451 | ID=Msa0580990-mRNA-1:exon:31861;Parent=Msa0580990-mRNA-1 |
| chr4_1 | exon | 86271419 | 86271499 | 86271419 | ID=Msa0580990-mRNA-1:exon:31860;Parent=Msa0580990-mRNA-1 |
| chr4_1 | exon | 86271610 | 86271685 | 86271610 | ID=Msa0580990-mRNA-1:exon:31859;Parent=Msa0580990-mRNA-1 |
| chr4_1 | exon | 86271963 | 86272229 | 86271963 | ID=Msa0580990-mRNA-1:exon:31858;Parent=Msa0580990-mRNA-1 |
| chr4_1 | exon | 86273161 | 86273243 | 86273161 | ID=Msa0580990-mRNA-1:exon:31857;Parent=Msa0580990-mRNA-1 |
| chr4_1 | exon | 86273325 | 86273735 | 86273325 | ID=Msa0580990-mRNA-1:exon:31856;Parent=Msa0580990-mRNA-1 |
| chr4_1 | five_prime_UTR | 86273573 | 86273735 | 86273573 | ID=Msa0580990-mRNA-1:five_prime_utr;Parent=Msa0580990-mRNA-1 |
| chr4_1 | CDS | 86273325 | 86273572 | 86273325 | ID=Msa0580990-mRNA-1:cds;Parent=Msa0580990-mRNA-1 |
| chr4_1 | CDS | 86273161 | 86273243 | 86273161 | ID=Msa0580990-mRNA-1:cds;Parent=Msa0580990-mRNA-1 |
| chr4_1 | CDS | 86271963 | 86272229 | 86271963 | ID=Msa0580990-mRNA-1:cds;Parent=Msa0580990-mRNA-1 |
| chr4_1 | CDS | 86271610 | 86271685 | 86271610 | ID=Msa0580990-mRNA-1:cds;Parent=Msa0580990-mRNA-1 |
| chr4_1 | CDS | 86271419 | 86271499 | 86271419 | ID=Msa0580990-mRNA-1:cds;Parent=Msa0580990-mRNA-1 |
| chr4_1 | CDS | 86270451 | 86270529 | 86270451 | ID=Msa0580990-mRNA-1:cds;Parent=Msa0580990-mRNA-1 |
| chr4_1 | CDS | 86270262 | 86270362 | 86270262 | ID=Msa0580990-mRNA-1:cds;Parent=Msa0580990-mRNA-1 |
| chr4_1 | CDS | 86270033 | 86270120 | 86270033 | ID=Msa0580990-mRNA-1:cds;Parent=Msa0580990-mRNA-1 |
| chr4_1 | three_prime_UTR | 86269721 | 86270032 | 86269721 | ID=Msa0580990-mRNA-1:three_prime_utr;Parent=Msa0580990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
