AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0026670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026670 MtrunA17_Chr1g0153371 96.058 482 19 0 1 482 1 482 0.0 964
Msa0026670 MtrunA17_Chr4g0044851 67.556 450 141 3 22 468 22 469 0.0 643
Msa0026670 MtrunA17_Chr4g0044841 66.740 454 146 4 19 469 21 472 0.0 635
Msa0026670 MtrunA17_Chr8g0369791 54.839 465 194 6 6 467 12 463 0.0 535
Msa0026670 MtrunA17_Chr5g0408181 54.701 468 198 6 5 467 3 461 0.0 527
Msa0026670 MtrunA17_Chr1g0164371 51.717 466 219 4 1 465 12 472 2.54e-164 473
Msa0026670 MtrunA17_Chr2g0293421 31.447 477 310 10 8 472 20 491 1.45e-80 258
Msa0026670 MtrunA17_Chr2g0293411 31.818 484 308 11 6 471 10 489 1.66e-77 250
Msa0026670 MtrunA17_Chr7g0226771 33.634 443 276 9 9 440 7 442 3.49e-77 249
Msa0026670 MtrunA17_Chr6g0455461 31.881 436 284 9 35 465 33 460 2.80e-75 244
Msa0026670 MtrunA17_Chr8g0381541 31.458 480 313 8 6 472 16 492 1.19e-73 240
Msa0026670 MtrunA17_Chr3g0113321 32.536 418 262 7 34 438 28 438 5.55e-73 238
Msa0026670 MtrunA17_Chr5g0443401 32.500 480 302 11 1 465 1 473 7.07e-73 238
Msa0026670 MtrunA17_Chr7g0219961 30.575 435 292 7 35 466 33 460 7.25e-73 238
Msa0026670 MtrunA17_Chr8g0341951 31.567 453 289 12 1 440 1 445 8.84e-73 238
Msa0026670 MtrunA17_Chr3g0078411 30.805 435 290 8 35 465 33 460 2.22e-72 236
Msa0026670 MtrunA17_Chr8g0388921 30.526 475 313 8 3 467 8 475 7.45e-71 233
Msa0026670 MtrunA17_Chr8g0381571 32.143 448 288 8 6 440 16 460 1.64e-70 232
Msa0026670 MtrunA17_Chr5g0403931 31.535 482 314 9 2 470 3 481 1.98e-70 232
Msa0026670 MtrunA17_Chr3g0089361 31.360 456 296 10 23 468 28 476 5.23e-68 225
Msa0026670 MtrunA17_Chr5g0400421 31.959 485 308 12 1 465 4 486 1.17e-67 224
Msa0026670 MtrunA17_Chr5g0443731 31.250 448 292 6 27 462 21 464 2.04e-67 223
Msa0026670 MtrunA17_Chr3g0107511 30.233 473 313 7 9 466 8 478 6.81e-67 222
Msa0026670 MtrunA17_Chr3g0107501 30.067 449 302 6 28 465 26 473 3.23e-64 215
Msa0026670 MtrunA17_Chr3g0141801 30.704 469 309 8 9 465 16 480 2.67e-63 213
Msa0026670 MtrunA17_Chr8g0372711 30.227 440 298 5 7 439 17 454 7.00e-63 212
Msa0026670 MtrunA17_Chr5g0400411 31.198 484 312 11 1 465 4 485 2.12e-62 211
Msa0026670 MtrunA17_Chr8g0373441 31.915 423 259 12 4 411 7 415 7.54e-62 207
Msa0026670 MtrunA17_Chr8g0339861 30.390 487 314 14 1 472 13 489 1.84e-60 206
Msa0026670 MtrunA17_Chr5g0397971 29.647 425 287 7 25 440 21 442 3.91e-60 204
Msa0026670 MtrunA17_Chr8g0380471 28.238 471 323 7 4 465 8 472 1.68e-59 203
Msa0026670 MtrunA17_Chr8g0372411 29.327 416 279 8 36 440 40 451 3.76e-59 202
Msa0026670 MtrunA17_Chr3g0089351 29.648 398 271 8 70 465 1 391 2.02e-58 197
Msa0026670 MtrunA17_Chr8g0380931 29.374 463 302 8 19 465 48 501 1.12e-57 199
Msa0026670 MtrunA17_Chr6g0478161 28.256 453 304 8 2 440 17 462 1.82e-55 192
Msa0026670 MtrunA17_Chr8g0381551 28.931 318 212 6 6 312 16 330 1.58e-34 132
Msa0026670 MtrunA17_Chr8g0334891 26.549 452 289 17 26 456 32 461 4.19e-33 131
Msa0026670 MtrunA17_Chr1g0161671 29.333 300 199 6 21 310 17 313 2.17e-32 125
Msa0026670 MtrunA17_Chr5g0404861 42.500 120 66 1 327 443 16 135 4.25e-28 109
Msa0026670 MtrunA17_Chr4g0000151 37.324 142 87 2 332 472 5 145 1.70e-27 107
Msa0026670 MtrunA17_Chr1g0162811 27.373 453 288 17 1 420 1 445 1.93e-27 115
Msa0026670 MtrunA17_Chr8g0334941 30.769 260 152 9 210 456 62 306 3.00e-26 108
Msa0026670 MtrunA17_Chr8g0381561 44.231 104 57 1 338 440 8 111 5.64e-26 102
Msa0026670 MtrunA17_Chr6g0463551 29.444 180 118 3 193 365 12 189 1.53e-25 103
Msa0026670 MtrunA17_Chr4g0004601 24.221 417 269 14 65 448 107 509 5.13e-24 105
Msa0026670 MtrunA17_Chr4g0013471 26.282 312 206 8 27 327 35 333 7.41e-24 103
Msa0026670 MtrunA17_Chr4g0000161 28.475 295 195 7 29 312 37 326 1.05e-23 102
Msa0026670 MtrunA17_Chr2g0310391 24.043 470 313 14 8 443 2 461 1.32e-23 103
Msa0026670 MtrunA17_Chr7g0235261 24.163 418 270 14 64 448 85 488 2.55e-23 102
Msa0026670 MtrunA17_Chr8g0361471 25.373 469 299 18 10 435 5 465 2.56e-23 102
Msa0026670 MtrunA17_Chr2g0310381 24.490 490 309 16 9 464 6 468 3.98e-23 102
Msa0026670 MtrunA17_Chr4g0000171 27.273 297 200 7 27 312 35 326 1.81e-22 98.2
Msa0026670 MtrunA17_Chr5g0436981 33.537 164 103 3 28 185 21 184 2.86e-22 94.4
Msa0026670 MtrunA17_Chr5g0437001 40.741 108 60 1 333 436 1 108 5.78e-22 92.4
Msa0026670 MtrunA17_Chr6g0465511 24.839 467 304 18 10 435 5 465 6.05e-22 98.6
Msa0026670 MtrunA17_Chr6g0466331 24.839 467 304 18 10 435 5 465 6.88e-22 98.6
Msa0026670 MtrunA17_Chr4g0035921 25.100 502 296 19 1 443 1 481 1.23e-21 97.8
Msa0026670 MtrunA17_Chr5g0404881 29.464 224 149 5 6 223 7 227 2.03e-21 93.2
Msa0026670 MtrunA17_Chr3g0101671 25.109 458 288 18 7 420 4 450 2.38e-21 97.1
Msa0026670 MtrunA17_Chr1g0160851 24.580 476 304 16 9 445 8 467 1.02e-20 94.7
Msa0026670 MtrunA17_Chr5g0405001 24.364 472 301 16 10 443 28 481 1.24e-20 94.7
Msa0026670 MtrunA17_Chr6g0463561 31.875 160 100 3 5 159 12 167 2.06e-20 89.4
Msa0026670 MtrunA17_Chr2g0286091 24.370 476 305 15 35 468 41 503 2.20e-20 94.0
Msa0026670 MtrunA17_Chr6g0463541 39.423 104 63 0 361 464 2 105 2.28e-20 86.3
Msa0026670 MtrunA17_Chr1g0162801 24.641 487 295 18 1 435 1 467 3.31e-20 93.6
Msa0026670 MtrunA17_Chr8g0336361 23.266 447 276 13 64 448 95 536 5.65e-20 92.8
Msa0026670 MtrunA17_Chr4g0020041 23.711 485 305 16 1 439 1 466 6.02e-20 92.4
Msa0026670 MtrunA17_Chr8g0362731 26.425 386 238 16 95 448 15 386 7.20e-20 91.7
Msa0026670 MtrunA17_Chr6g0458561 23.279 494 297 19 8 443 28 497 7.44e-20 92.4
Msa0026670 MtrunA17_Chr5g0403351 23.382 479 323 16 1 443 1 471 1.02e-19 92.0
Msa0026670 MtrunA17_Chr3g0101701 24.943 441 296 16 11 420 14 450 1.38e-19 91.7
Msa0026670 MtrunA17_Chr3g0101631 24.342 456 294 17 1 420 1 441 1.60e-19 91.3
Msa0026670 MtrunA17_Chr5g0445421 23.908 435 287 13 11 424 91 502 1.62e-19 91.7
Msa0026670 MtrunA17_Chr8g0382901 22.926 458 305 16 4 436 2 436 2.16e-19 91.7
Msa0026670 MtrunA17_Chr8g0382901 22.551 439 302 15 28 436 485 915 2.16e-15 79.3
Msa0026670 MtrunA17_Chr3g0101751 25.386 453 291 20 8 421 10 454 7.07e-19 89.4
Msa0026670 MtrunA17_Chr3g0089291 27.615 239 165 7 70 306 1 233 7.12e-19 85.9
Msa0026670 MtrunA17_Chr3g0089381 31.875 160 108 1 206 365 34 192 8.48e-19 85.1
Msa0026670 MtrunA17_Chr5g0403321 24.520 469 282 17 27 443 26 474 8.56e-19 89.0
Msa0026670 MtrunA17_Chr8g0377341 25.159 473 297 20 7 439 38 493 8.91e-19 89.0
Msa0026670 MtrunA17_Chr3g0101621 23.947 451 288 17 8 420 3 436 1.22e-18 88.6
Msa0026670 MtrunA17_Chr3g0101611 24.017 458 299 17 24 444 27 472 1.51e-18 88.2
Msa0026670 MtrunA17_Chr3g0135841 30.738 244 141 7 213 439 271 503 1.99e-18 88.2
Msa0026670 MtrunA17_Chr3g0101581 23.799 437 294 15 16 420 18 447 2.53e-18 87.8
Msa0026670 MtrunA17_Chr8g0357421 25.052 479 313 19 10 451 5 474 2.61e-18 87.4
Msa0026670 MtrunA17_Chr5g0431511 24.664 446 291 16 35 443 33 470 3.41e-18 87.0
Msa0026670 MtrunA17_Chr1g0174451 23.093 472 300 13 1 424 1 457 4.03e-18 87.0
Msa0026670 MtrunA17_Chr1g0167321 25.885 452 296 18 1 420 1 445 8.46e-18 85.9
Msa0026670 MtrunA17_Chr5g0446151 24.779 452 294 17 21 439 27 465 1.03e-17 85.9
Msa0026670 MtrunA17_Chr5g0395381 21.842 467 293 16 5 439 10 436 1.24e-17 85.5
Msa0026670 MtrunA17_Chr3g0101711 22.418 455 312 18 1 420 1 449 2.44e-17 84.7
Msa0026670 MtrunA17_Chr4g0046351 26.210 248 158 8 227 455 245 486 2.48e-17 84.7
Msa0026670 MtrunA17_Chr7g0246221 22.432 477 309 16 10 439 5 467 3.05e-17 84.3
Msa0026670 MtrunA17_Chr5g0446161 23.617 470 312 15 3 439 9 464 5.42e-17 83.6
Msa0026670 MtrunA17_Chr3g0116741 24.167 480 301 19 1 439 22 479 5.58e-17 83.6
Msa0026670 MtrunA17_Chr8g0355961 23.640 478 280 20 3 424 7 455 5.79e-17 83.6
Msa0026670 MtrunA17_Chr5g0401681 22.934 484 304 15 5 445 6 463 5.92e-17 83.2
Msa0026670 MtrunA17_Chr3g0101831 24.336 452 294 18 10 421 5 448 6.09e-17 83.2
Msa0026670 MtrunA17_Chr4g0024771 22.426 437 304 16 11 420 17 445 7.75e-17 83.2
Msa0026670 MtrunA17_Chr5g0431501 24.434 442 297 14 35 443 33 470 8.28e-17 82.8
Msa0026670 MtrunA17_Chr5g0431461 24.434 442 297 14 35 443 33 470 8.28e-17 82.8
Msa0026670 MtrunA17_Chr6g0457421 28.926 242 155 7 214 443 244 480 1.10e-16 82.4
Msa0026670 MtrunA17_Chr3g0101801 23.663 486 306 21 1 435 1 472 1.19e-16 82.4
Msa0026670 MtrunA17_Chr8g0372251 22.248 427 284 11 33 420 33 450 1.23e-16 82.4
Msa0026670 MtrunA17_Chr3g0101601 23.282 451 297 16 8 420 3 442 1.27e-16 82.4
Msa0026670 MtrunA17_Chr3g0101821 21.983 464 326 16 7 439 7 465 1.41e-16 82.4
Msa0026670 MtrunA17_Chr4g0058191 22.822 482 317 16 9 451 1 466 1.76e-16 82.0
Msa0026670 MtrunA17_Chr1g0161641 40.789 76 44 1 366 440 13 88 2.33e-16 74.3
Msa0026670 MtrunA17_Chr3g0101761 22.553 470 315 18 8 435 3 465 2.51e-16 81.3
Msa0026670 MtrunA17_Chr3g0101661 23.348 454 309 15 1 420 1 449 2.54e-16 81.6
Msa0026670 MtrunA17_Chr7g0218611 23.516 455 303 14 25 443 23 468 2.65e-16 81.3
Msa0026670 MtrunA17_Chr2g0314721 24.752 505 317 19 6 469 15 497 2.74e-16 81.3
Msa0026670 MtrunA17_Chr6g0463801 24.419 430 273 15 27 420 29 442 2.86e-16 81.3
Msa0026670 MtrunA17_Chr8g0339331 24.464 466 298 19 24 443 27 484 3.09e-16 81.3
Msa0026670 MtrunA17_Chr3g0101651 22.748 444 302 15 11 420 14 450 4.67e-16 80.5
Msa0026670 MtrunA17_Chr8g0364081 21.961 510 329 16 4 450 20 523 4.73e-16 80.9
Msa0026670 MtrunA17_Chr7g0258221 23.593 462 293 14 9 424 8 455 5.23e-16 80.5
Msa0026670 MtrunA17_Chr5g0400391 36.667 90 56 1 384 472 2 91 6.19e-16 73.6
Msa0026670 MtrunA17_Chr5g0445441 23.362 458 299 15 3 424 49 490 7.26e-16 80.1
Msa0026670 MtrunA17_Chr1g0207841 27.132 258 152 8 220 450 241 489 7.87e-16 80.1
Msa0026670 MtrunA17_Chr3g0101691 22.902 441 305 15 11 420 14 450 1.12e-15 79.3
Msa0026670 MtrunA17_Chr2g0280261 24.424 434 284 14 24 425 23 444 1.17e-15 79.3
Msa0026670 MtrunA17_Chr3g0101571 23.266 447 297 17 11 420 7 444 1.19e-15 79.3
Msa0026670 MtrunA17_Chr5g0445381 23.620 453 287 16 11 424 48 480 1.29e-15 79.3
Msa0026670 MtrunA17_Chr4g0058201 22.517 453 309 17 32 451 25 468 1.95e-15 78.6
Msa0026670 MtrunA17_Chr4g0061381 30.396 227 136 9 213 424 233 452 2.19e-15 78.6
Msa0026670 MtrunA17_Chr4g0046331 25.101 247 160 8 227 453 245 486 2.43e-15 78.6
Msa0026670 MtrunA17_Chr3g0128461 22.434 419 286 14 59 447 92 501 3.17e-15 78.2
Msa0026670 MtrunA17_Chr4g0046321 24.898 245 161 8 227 453 245 484 6.04e-15 77.0
Msa0026670 MtrunA17_Chr2g0296651 22.845 464 288 17 5 424 5 442 6.71e-15 77.0
Msa0026670 MtrunA17_Chr1g0151221 22.156 501 308 14 3 439 13 495 6.77e-15 77.0
Msa0026670 MtrunA17_Chr4g0039901 21.875 448 298 13 30 439 30 463 7.68e-15 76.6
Msa0026670 MtrunA17_Chr3g0116681 23.355 471 326 16 1 443 8 471 8.96e-15 76.6
Msa0026670 MtrunA17_Chr8g0390881 21.121 464 317 15 10 436 14 465 2.26e-14 75.5
Msa0026670 MtrunA17_Chr3g0101721 23.340 467 318 16 12 445 14 473 3.22e-14 74.7
Msa0026670 MtrunA17_Chr5g0401691 21.516 488 303 16 5 445 26 480 3.23e-14 74.7
Msa0026670 MtrunA17_Chr1g0161661 39.759 83 49 1 384 465 14 96 3.90e-14 68.2
Msa0026670 MtrunA17_Chr4g0058231 22.110 493 309 20 5 445 2 471 4.41e-14 74.3
Msa0026670 MtrunA17_Chr7g0215181 27.572 243 156 7 215 443 246 482 1.21e-13 73.2
Msa0026670 MtrunA17_Chr5g0436991 29.661 118 78 2 194 310 43 156 1.38e-13 68.6
Msa0026670 MtrunA17_Chr2g0288661 21.739 437 286 13 43 448 85 496 2.46e-13 72.0
Msa0026670 MtrunA17_Chr5g0395321 26.577 222 147 6 228 439 246 461 2.86e-13 72.0
Msa0026670 MtrunA17_Chr5g0396521 23.963 217 127 5 264 446 333 545 3.65e-13 71.6
Msa0026670 MtrunA17_Chr5g0419451 22.803 421 286 15 51 440 73 485 4.85e-13 71.2
Msa0026670 MtrunA17_Chr6g0466901 23.739 476 302 22 1 424 1 467 7.62e-13 70.5
Msa0026670 MtrunA17_Chr4g0030711 26.275 255 160 8 220 450 240 490 7.69e-13 70.5
Msa0026670 MtrunA17_Chr8g0354531 23.469 392 258 14 104 461 254 637 1.09e-12 70.5
Msa0026670 MtrunA17_Chr8g0370641 26.606 218 146 6 232 439 272 485 1.09e-12 70.1
Msa0026670 MtrunA17_Chr8g0344191 22.845 464 289 18 10 424 44 487 1.12e-12 70.1
Msa0026670 MtrunA17_Chr1g0176831 22.664 503 324 18 6 466 34 513 1.26e-12 70.1
Msa0026670 MtrunA17_Chr2g0313761 21.429 434 291 12 43 448 78 489 1.37e-12 69.7
Msa0026670 MtrunA17_Chr4g0046681 26.946 167 107 7 264 420 16 177 1.53e-12 67.4
Msa0026670 MtrunA17_Chr1g0193811 22.705 414 280 13 81 463 106 510 2.90e-12 68.9
Msa0026670 MtrunA17_Chr5g0431641 22.779 439 299 15 13 420 16 445 3.15e-12 68.6
Msa0026670 MtrunA17_Chr4g0039391 24.670 227 160 6 227 446 251 473 3.16e-12 68.6
Msa0026670 MtrunA17_Chr3g0089371 26.316 152 100 5 23 165 28 176 3.46e-12 65.9
Msa0026670 MtrunA17_Chr7g0246181 24.841 471 304 17 8 439 7 466 3.57e-12 68.6
Msa0026670 MtrunA17_Chr6g0484811 21.941 474 320 17 8 443 12 473 4.69e-12 68.2
Msa0026670 MtrunA17_Chr1g0161651 23.390 295 165 7 27 267 35 322 4.86e-12 67.0
Msa0026670 MtrunA17_Chr8g0387101 23.239 426 281 13 59 444 58 477 4.94e-12 68.2
Msa0026670 MtrunA17_Chr4g0058211 25.532 188 131 3 270 451 10 194 5.73e-12 65.1
Msa0026670 MtrunA17_Chr1g0179811 22.799 443 291 15 60 462 101 532 6.26e-12 67.8
Msa0026670 MtrunA17_Chr1g0184461 21.956 501 292 21 8 441 5 473 6.57e-12 67.8
Msa0026670 MtrunA17_Chr4g0063221 21.780 427 301 13 59 459 86 505 6.83e-12 67.8
Msa0026670 MtrunA17_Chr5g0431671 21.429 420 295 13 30 420 33 446 7.16e-12 67.4
Msa0026670 MtrunA17_Chr7g0218601 25.114 219 151 4 232 443 255 467 8.95e-12 67.0
Msa0026670 MtrunA17_Chr2g0296661 26.904 197 138 3 231 425 256 448 1.02e-11 67.0
Msa0026670 MtrunA17_Chr4g0052861 25.926 216 147 7 227 438 249 455 1.13e-11 67.0
Msa0026670 MtrunA17_Chr5g0446131 23.529 425 268 14 43 433 81 482 1.19e-11 67.0
Msa0026670 MtrunA17_Chr2g0313801 22.102 371 248 12 110 448 133 494 1.20e-11 67.0
Msa0026670 MtrunA17_Chr4g0053621 21.849 476 281 19 7 425 6 447 1.23e-11 66.6
Msa0026670 MtrunA17_Chr7g0262111 24.814 403 271 14 67 447 90 482 1.25e-11 66.6
Msa0026670 MtrunA17_Chr4g0017411 26.943 193 135 4 233 424 243 430 1.38e-11 66.6
Msa0026670 MtrunA17_Chr3g0086691 28.049 246 157 8 213 443 234 474 1.65e-11 66.2
Msa0026670 MtrunA17_Chr4g0076161 21.250 480 316 15 6 443 12 471 2.33e-11 65.9
Msa0026670 MtrunA17_Chr1g0164211 23.684 228 161 6 228 446 242 465 2.84e-11 65.5
Msa0026670 MtrunA17_Chr4g0030701 25.896 251 159 7 220 447 238 484 6.61e-11 64.7
Msa0026670 MtrunA17_Chr4g0052881 23.116 199 145 4 228 424 251 443 8.29e-11 64.3
Msa0026670 MtrunA17_Chr3g0086651 28.049 246 157 8 213 443 234 474 9.24e-11 63.9
Msa0026670 MtrunA17_Chr3g0086661 28.745 247 154 9 213 443 234 474 9.40e-11 63.9
Msa0026670 MtrunA17_Chr2g0280011 29.348 184 115 5 280 450 9 190 9.72e-11 61.6
Msa0026670 MtrunA17_Chr4g0046631 22.374 438 291 20 25 420 35 465 9.73e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026670 AT3G19270.2 66.067 445 147 3 27 470 26 467 0.0 623
Msa0026670 AT3G19270.1 66.506 415 135 3 27 440 26 437 0.0 590
Msa0026670 AT4G19230.1 54.915 468 196 5 9 469 3 462 0.0 551
Msa0026670 AT5G45340.1 55.756 443 188 3 27 469 28 462 0.0 546
Msa0026670 AT4G19230.2 53.105 467 202 7 9 467 3 460 0.0 523
Msa0026670 AT5G45340.2 55.904 415 175 3 27 441 28 434 0.0 518
Msa0026670 AT2G29090.2 54.318 440 196 4 29 466 43 479 2.88e-173 496
Msa0026670 AT2G29090.1 54.318 440 196 4 29 466 43 479 2.88e-173 496
Msa0026670 AT2G29090.3 53.230 387 176 4 82 466 1 384 1.33e-145 422
Msa0026670 AT2G29090.4 51.237 283 134 3 29 310 43 322 2.05e-92 285
Msa0026670 AT1G05160.2 33.333 444 281 8 35 465 45 486 1.91e-83 266
Msa0026670 AT1G05160.1 33.333 444 281 8 35 465 45 486 1.91e-83 266
Msa0026670 AT2G32440.2 31.933 476 304 8 11 468 13 486 8.51e-80 256
Msa0026670 AT2G32440.1 31.933 476 304 8 11 468 13 486 8.51e-80 256
Msa0026670 AT5G05690.1 33.184 446 280 7 5 439 1 439 1.18e-72 238
Msa0026670 AT1G19630.1 32.632 475 303 10 5 468 6 474 1.62e-69 229
Msa0026670 AT5G38970.1 29.186 442 301 8 9 446 10 443 2.35e-69 229
Msa0026670 AT1G19630.3 32.735 446 284 9 5 440 6 445 2.07e-67 223
Msa0026670 AT3G30180.1 31.401 414 276 7 35 445 34 442 2.97e-67 223
Msa0026670 AT5G36110.1 33.259 451 279 10 35 470 34 477 3.62e-67 223
Msa0026670 AT3G50660.1 30.847 496 274 13 27 468 31 511 1.79e-64 217
Msa0026670 AT1G12740.1 28.795 448 298 7 9 444 8 446 2.32e-64 216
Msa0026670 AT3G13730.2 30.952 420 272 9 34 440 50 464 9.36e-63 211
Msa0026670 AT1G12740.2 28.414 454 298 8 9 444 8 452 1.25e-62 211
Msa0026670 AT5G05690.2 32.258 403 259 5 5 400 1 396 1.85e-62 209
Msa0026670 AT1G12740.4 28.634 454 297 8 9 444 8 452 2.29e-62 211
Msa0026670 AT3G13730.1 30.952 420 272 9 34 440 50 464 2.35e-62 211
Msa0026670 AT5G38970.3 29.471 397 270 7 9 403 10 398 5.06e-62 208
Msa0026670 AT4G36380.1 31.829 421 266 12 35 439 69 484 2.52e-61 209
Msa0026670 AT2G42850.1 29.436 479 314 11 4 465 8 479 1.88e-57 198
Msa0026670 AT1G19630.2 32.598 408 259 9 5 402 6 407 4.76e-57 195
Msa0026670 AT1G55940.1 29.204 452 299 12 4 439 17 463 1.03e-56 195
Msa0026670 AT1G55940.2 28.821 458 303 13 4 444 17 468 3.19e-56 195
Msa0026670 AT5G14400.3 30.288 416 249 13 40 441 1 389 1.44e-54 187
Msa0026670 AT5G14400.2 30.216 417 252 12 40 443 1 391 2.93e-54 187
Msa0026670 AT5G38970.2 28.375 363 251 6 87 445 4 361 1.95e-51 179
Msa0026670 AT5G38970.4 28.375 363 251 6 87 445 4 361 1.95e-51 179
Msa0026670 AT1G65670.1 30.090 442 283 11 5 435 8 434 3.63e-51 181
Msa0026670 AT1G78490.1 29.314 423 285 8 33 444 33 452 7.18e-51 180
Msa0026670 AT3G44970.1 29.108 426 286 9 30 443 30 451 2.40e-50 179
Msa0026670 AT5G48000.2 28.035 453 299 12 30 465 30 472 6.58e-50 177
Msa0026670 AT5G48000.4 28.035 453 299 12 30 465 30 472 6.58e-50 177
Msa0026670 AT5G48000.7 28.035 453 299 12 30 465 30 472 6.58e-50 177
Msa0026670 AT5G48000.6 28.035 453 299 12 30 465 30 472 6.58e-50 177
Msa0026670 AT5G48000.5 28.035 453 299 12 30 465 30 472 6.58e-50 177
Msa0026670 AT5G48000.3 28.035 453 299 12 30 465 30 472 6.58e-50 177
Msa0026670 AT1G73340.1 26.786 448 300 7 5 440 21 452 7.28e-50 177
Msa0026670 AT4G15393.2 29.345 443 286 13 6 435 9 437 1.13e-49 176
Msa0026670 AT5G05690.3 32.515 326 206 6 121 439 2 320 1.35e-49 173
Msa0026670 AT5G48000.1 28.222 450 302 12 30 465 71 513 1.74e-49 177
Msa0026670 AT3G50660.2 29.540 413 244 10 25 400 29 431 4.72e-49 174
Msa0026670 AT4G15300.2 29.464 448 282 16 5 435 8 438 3.85e-47 170
Msa0026670 AT4G15300.3 29.438 445 280 16 8 435 1 428 7.01e-47 169
Msa0026670 AT4G15396.3 27.376 442 298 11 6 435 9 439 3.85e-44 161
Msa0026670 AT4G15396.1 27.376 442 298 11 6 435 9 439 4.27e-44 162
Msa0026670 AT1G12740.3 26.359 368 253 6 9 367 8 366 6.19e-43 156
Msa0026670 AT1G78490.2 28.871 381 252 8 33 401 33 406 2.26e-41 153
Msa0026670 AT4G15300.1 28.051 467 280 18 8 435 1 450 8.02e-41 153
Msa0026670 AT5G14400.1 28.841 371 229 11 91 452 2 346 1.40e-40 149
Msa0026670 AT4G15393.1 28.218 404 267 12 6 400 9 398 5.84e-40 149
Msa0026670 AT4G36380.2 29.738 343 224 10 35 365 69 406 3.44e-38 144
Msa0026670 AT5G36110.2 29.745 353 228 8 35 374 34 379 6.31e-38 143
Msa0026670 AT5G14400.4 28.614 339 220 11 40 365 1 330 3.35e-37 139
Msa0026670 AT4G15396.2 26.126 444 280 12 6 435 9 418 1.12e-36 141
Msa0026670 AT4G15396.4 26.238 404 279 10 6 401 9 401 1.09e-35 137
Msa0026670 AT2G42850.2 28.093 388 255 10 4 374 8 388 9.14e-35 134
Msa0026670 AT4G15310.1 26.949 449 305 12 4 440 8 445 1.21e-33 132
Msa0026670 AT5G36130.1 47.143 140 72 2 333 470 1 140 1.31e-32 121
Msa0026670 AT4G15393.3 25.558 403 246 11 6 400 9 365 3.02e-30 121
Msa0026670 AT1G11680.1 23.579 475 328 14 8 461 16 476 3.83e-30 123
Msa0026670 AT3G30290.1 25.538 372 262 8 71 435 5 368 2.39e-29 119
Msa0026670 AT4G13770.1 25.684 475 313 14 1 443 1 467 1.45e-28 118
Msa0026670 AT5G36140.1 27.465 284 189 9 35 308 33 309 1.12e-24 104
Msa0026670 AT3G44970.2 25.449 334 236 8 30 354 30 359 6.64e-22 97.4
Msa0026670 AT5G25120.1 26.614 511 304 23 4 464 2 491 3.29e-21 96.7
Msa0026670 AT2G45560.1 22.803 478 308 16 8 439 9 471 1.75e-20 94.7
Msa0026670 AT5G57220.1 24.528 477 305 15 1 444 1 455 9.75e-20 92.4
Msa0026670 AT5G67310.1 25.474 475 308 22 1 442 8 469 1.16e-19 92.0
Msa0026670 AT5G25130.1 27.373 453 277 19 4 420 2 438 6.08e-19 89.7
Msa0026670 AT5G04330.1 23.982 442 286 14 36 436 33 465 1.13e-18 89.4
Msa0026670 AT4G37370.1 24.017 229 164 5 228 453 247 468 2.15e-17 85.1
Msa0026670 AT5G24910.1 20.968 434 297 12 44 439 76 501 3.55e-17 84.7
Msa0026670 AT4G37340.1 26.250 240 161 6 212 445 232 461 1.18e-16 82.8
Msa0026670 AT1G50520.1 23.589 496 323 18 1 451 6 490 1.38e-16 82.8
Msa0026670 AT4G37320.1 25.000 220 159 3 228 446 248 462 1.52e-16 82.4
Msa0026670 AT2G34490.1 22.090 421 288 15 43 437 45 451 2.81e-16 81.6
Msa0026670 AT2G26170.2 29.707 239 142 7 213 435 173 401 3.05e-16 81.3
Msa0026670 AT4G37400.1 27.632 228 148 6 207 425 223 442 3.69e-16 81.3
Msa0026670 AT2G26170.1 29.707 239 142 7 213 435 256 484 4.51e-16 81.3
Msa0026670 AT3G20940.1 22.290 489 329 13 19 466 26 504 6.07e-16 80.9
Msa0026670 AT4G37430.1 23.044 473 309 18 10 444 9 464 7.58e-16 80.5
Msa0026670 AT2G45580.2 26.180 233 154 6 213 432 83 310 8.21e-16 79.3
Msa0026670 AT1G74110.1 21.837 490 321 16 9 445 31 511 8.50e-16 80.5
Msa0026670 AT2G45580.1 23.272 434 270 16 45 432 48 464 8.64e-16 80.1
Msa0026670 AT4G36220.1 22.917 480 308 11 2 436 14 476 1.60e-15 79.3
Msa0026670 AT4G27710.1 26.494 385 232 15 116 464 143 512 2.49e-15 79.0
Msa0026670 AT4G37410.1 26.872 227 151 7 213 431 230 449 2.79e-15 78.6
Msa0026670 AT2G24180.1 23.585 424 285 14 30 420 31 448 5.28e-15 77.8
Msa0026670 AT4G37310.1 25.620 242 173 4 220 454 242 483 5.79e-15 77.8
Msa0026670 AT4G37360.1 28.415 183 125 4 265 445 283 461 7.20e-15 77.4
Msa0026670 AT2G28850.1 21.902 347 240 8 109 437 114 447 7.47e-15 77.4
Msa0026670 AT2G34500.1 22.626 358 224 14 109 437 113 446 7.64e-15 77.4
Msa0026670 AT1G66540.2 25.333 225 151 6 228 445 75 289 8.23e-15 75.9
Msa0026670 AT1G66540.1 25.333 225 151 6 228 445 134 348 1.17e-14 75.9
Msa0026670 AT2G45550.1 26.638 229 144 7 219 439 259 471 3.33e-14 75.1
Msa0026670 AT3G28740.1 25.514 243 172 5 205 444 232 468 5.44e-14 74.7
Msa0026670 AT3G26280.1 22.422 446 301 16 16 424 15 452 1.14e-13 73.6
Msa0026670 AT3G26280.2 22.422 446 301 16 16 424 32 469 1.21e-13 73.6
Msa0026670 AT3G53130.1 21.928 415 278 13 67 444 108 513 3.68e-13 72.0
Msa0026670 AT3G52970.2 24.167 480 304 13 13 439 19 491 4.28e-13 72.0
Msa0026670 AT4G37330.1 24.664 223 154 4 228 445 245 458 6.94e-13 71.2
Msa0026670 AT3G52970.1 23.820 466 309 13 13 439 19 477 1.83e-12 69.7
Msa0026670 AT5G07990.1 22.153 483 319 18 7 446 5 473 4.17e-12 68.6
Msa0026670 AT2G22330.1 26.293 232 152 9 232 451 288 512 4.94e-12 68.6
Msa0026670 AT2G22330.2 26.293 232 152 9 232 451 311 535 5.44e-12 68.6
Msa0026670 AT2G23190.1 23.171 246 180 5 203 445 266 505 6.54e-12 68.2
Msa0026670 AT3G26290.1 24.027 437 279 17 22 420 21 442 9.91e-12 67.4
Msa0026670 AT2G46950.1 23.077 416 274 13 64 447 146 547 1.12e-11 67.4
Msa0026670 AT3G26290.2 23.937 447 267 18 22 420 34 455 1.18e-11 67.4
Msa0026670 AT2G23220.1 21.818 220 164 4 228 445 263 476 1.35e-11 67.0
Msa0026670 AT5G36220.2 23.214 224 160 5 227 446 107 322 2.25e-11 65.9
Msa0026670 AT5G36220.1 23.214 224 160 5 227 446 253 468 3.15e-11 65.9
Msa0026670 AT5G63450.1 23.422 491 308 22 1 441 1 473 3.99e-11 65.5
Msa0026670 AT5G42580.1 22.273 440 282 14 66 466 70 488 4.50e-11 65.5
Msa0026670 AT5G63450.2 23.422 491 308 22 1 441 59 531 5.94e-11 65.1
Msa0026670 AT3G26230.1 26.887 212 137 9 228 424 240 448 6.44e-11 65.1
Msa0026670 AT1G75130.1 23.034 356 241 13 129 461 150 495 8.13e-11 64.7

Find 120 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAATGGCATGAAAGTATT+TGG 0.142965 1_1:+50586489 None:intergenic
GGCATTGCTTTCCACCCTTT+TGG 0.171251 1_1:+50586688 None:intergenic
AGGGCTAAGGCTTCAATTTC+AGG 0.177274 1_1:+50588648 None:intergenic
GCTTATACCTTATAGGTAAT+TGG 0.207342 1_1:+50587178 None:intergenic
ATTAACTGCTTATACCTTAT+AGG 0.209223 1_1:+50587171 None:intergenic
AAGAGCTAAAGAAGAATTAT+TGG 0.218720 1_1:-50588162 Msa0026670:CDS
CCAAATGATGGATCATAATA+AGG 0.218766 1_1:+50586418 None:intergenic
AGCCAAAGTTGAATCCATTT+TGG 0.251756 1_1:+50589569 None:intergenic
TCAGCTACTGCTTCTCTAAA+TGG 0.254249 1_1:+50586944 None:intergenic
GAAATTGGAGATAACATTAT+TGG 0.259111 1_1:-50587851 Msa0026670:CDS
TTGGAGAAGAAGAAAAGATT+TGG 0.286221 1_1:+50589399 None:intergenic
AGAAGAAAAGATTTGGGTCT+TGG 0.292356 1_1:+50589406 None:intergenic
ATATTATCTGATGATGAAAT+TGG 0.294172 1_1:-50587866 Msa0026670:CDS
CCCTTTCCACCATCAAATCT+TGG 0.312974 1_1:-50588629 Msa0026670:CDS
ATGGTAAACTACAGCTGAAT+TGG 0.316888 1_1:-50587219 Msa0026670:CDS
GTTCTAATAATACACCAAAA+TGG 0.319205 1_1:-50589583 Msa0026670:exon
TAAATAGAGTCAAGGGGATT+TGG 0.319677 1_1:-50585495 Msa0026670:three_prime_UTR
ATTAGAACAAGAATCTAATA+AGG 0.320066 1_1:+50589598 None:intergenic
AAAGAACATAAATGAAAATA+AGG 0.325706 1_1:+50589521 None:intergenic
CCTTATTATGATCCATCATT+TGG 0.343940 1_1:-50586418 Msa0026670:CDS
ATATTCAAGACGAACATTCT+TGG 0.346956 1_1:-50588876 Msa0026670:CDS
AAACATGCCAATTACCTATA+AGG 0.352173 1_1:-50587185 Msa0026670:intron
GGCATGAAAGTATTTGGTTT+TGG 0.356492 1_1:+50586495 None:intergenic
CCAAATACTTTCATGCCATT+TGG 0.359912 1_1:-50586489 Msa0026670:CDS
CCATTCAAAGGCAATGGAAA+TGG 0.361111 1_1:+50585821 None:intergenic
CCTTTCCACCATCAAATCTT+GGG 0.366162 1_1:-50588628 Msa0026670:CDS
ATCATTTGGTCGTCAAGTTT+AGG 0.368718 1_1:-50586404 Msa0026670:intron
CTTGAAGGGTTGAATTTATG+AGG 0.372482 1_1:+50586622 None:intergenic
CACCAAAATGGATTCAACTT+TGG 0.379629 1_1:-50589571 Msa0026670:exon
CCTCGATTCACTTCGCAACT+TGG 0.379709 1_1:-50588673 Msa0026670:CDS
CCATTTCCATTGCCTTTGAA+TGG 0.384022 1_1:-50585821 Msa0026670:CDS
TCACACTGTGGGATTCAATA+TGG 0.388946 1_1:-50585845 Msa0026670:CDS
AAACTTCCTCCTGGTTCAAT+GGG 0.390178 1_1:-50589465 Msa0026670:CDS
AAGATTGGAAAAGCCTCAAC+AGG 0.394952 1_1:-50585569 Msa0026670:three_prime_UTR
TTTACACATTCGAGAAGTTT+CGG 0.400562 1_1:+50587758 None:intergenic
ATTCAACCCTTCAAGATTTG+AGG 0.401761 1_1:-50586614 Msa0026670:intron
TGGAGAAGAAGAAAAGATTT+GGG 0.403165 1_1:+50589400 None:intergenic
GAAGAAAAGATTTGGGTCTT+GGG 0.404022 1_1:+50589407 None:intergenic
AAAAGCAAAGAACGTTTGAT+TGG 0.407013 1_1:-50588768 Msa0026670:CDS
AAAACTTCCTCCTGGTTCAA+TGG 0.407546 1_1:-50589466 Msa0026670:CDS
AAAAGATTAATTTATGGCTA+TGG 0.410298 1_1:+50585699 None:intergenic
CTTTGAATGGACTCCCAGCC+AGG 0.412377 1_1:-50585808 Msa0026670:CDS
TGGCAATGAGCTTGCTAAGC+TGG 0.415341 1_1:-50586445 Msa0026670:CDS
GGTCTTGGGAGTAGAGTTGA+AGG 0.415849 1_1:+50589421 None:intergenic
GGAAATAATTAGTGAGAGGA+AGG 0.418556 1_1:-50587960 Msa0026670:CDS
ATTCATACCTCAAATCTTGA+AGG 0.422368 1_1:+50586607 None:intergenic
ATCATCACCCCAAGATTTGA+TGG 0.427411 1_1:+50588620 None:intergenic
GTGAGTACCATTTGCGTTTG+AGG 0.428828 1_1:-50588719 Msa0026670:CDS
TTTAGCTCTTCCCTCAACCT+TGG 0.449838 1_1:+50588175 None:intergenic
CAAATGATGGATCATAATAA+GGG 0.450882 1_1:+50586419 None:intergenic
GATTCTCTCCAACACCTGGC+TGG 0.454938 1_1:+50585794 None:intergenic
TAATTTATGGCTATGGAAAG+TGG 0.458488 1_1:+50585706 None:intergenic
TGAAGGGTTTGTCCTATGTA+AGG 0.459592 1_1:+50589438 None:intergenic
GGGTTGAATTTATGAGGCTC+TGG 0.474079 1_1:+50586628 None:intergenic
CCAGGATTCCTAATCCCAAA+AGG 0.474118 1_1:-50586703 Msa0026670:intron
CATTCAAAGGCAATGGAAAT+GGG 0.474896 1_1:+50585822 None:intergenic
TGTGTACCAGGAATTTGAGT+TGG 0.476181 1_1:+50588112 None:intergenic
CCAAGATTTGATGGTGGAAA+GGG 0.481164 1_1:+50588629 None:intergenic
AACACAAAACGTGCAGCTTC+AGG 0.483985 1_1:+50588828 None:intergenic
ATCAAATCTTGGGGTGATGA+TGG 0.495039 1_1:-50588618 Msa0026670:CDS
ACTTTCATGCCATTTGGTAG+TGG 0.497443 1_1:-50586483 Msa0026670:CDS
AGCTGTTTCTTGAATTGGAA+AGG 0.501218 1_1:-50587902 Msa0026670:CDS
TTCCTCCTGGTTCAATGGGG+TGG 0.506411 1_1:-50589461 Msa0026670:CDS
GCAATCTAGAGCCAAGGTTG+AGG 0.509932 1_1:-50588186 Msa0026670:CDS
AGCTTAGCAAGCTCATTGCC+AGG 0.510940 1_1:+50586447 None:intergenic
TAAGCTTCCTCAAACGCAAA+TGG 0.513067 1_1:+50588712 None:intergenic
ATGGACTCCCAGCCAGGTGT+TGG 0.513265 1_1:-50585802 Msa0026670:CDS
TAAACTTGACGACCAAATGA+TGG 0.513374 1_1:+50586406 None:intergenic
TTGAATTGGAAAGGAGAAGG+AGG 0.514480 1_1:-50587893 Msa0026670:CDS
CAATCTAGAGCCAAGGTTGA+GGG 0.517826 1_1:-50588185 Msa0026670:CDS
AAAATAAGGTAAGAAGAAAG+AGG 0.522546 1_1:+50589535 None:intergenic
ATTCTCTCCAACACCTGGCT+GGG 0.529923 1_1:+50585795 None:intergenic
ACAATTCACATGGAAAATGA+TGG 0.536909 1_1:-50587238 Msa0026670:CDS
CCCAAGATTTGATGGTGGAA+AGG 0.538660 1_1:+50588628 None:intergenic
TTCTTGAATTGGAAAGGAGA+AGG 0.539562 1_1:-50587896 Msa0026670:CDS
TTTGATGGTGGAAAGGGCTA+AGG 0.541061 1_1:+50588635 None:intergenic
GCAAATGGTACTCACCTTGG+TGG 0.541284 1_1:+50588727 None:intergenic
TTTGATATAAATAGAGTCAA+GGG 0.543565 1_1:-50585502 Msa0026670:three_prime_UTR
GTCTTGGGAGTAGAGTTGAA+GGG 0.543626 1_1:+50589422 None:intergenic
GTGAAGGCAAGAGAGAAACT+TGG 0.544371 1_1:-50587995 Msa0026670:intron
GGGAGTCCATTCAAAGGCAA+TGG 0.544618 1_1:+50585815 None:intergenic
TGAAGGAAATAATTAGTGAG+AGG 0.545555 1_1:-50587964 Msa0026670:CDS
TTTGGTATATAGGTTGGAAG+TGG 0.546819 1_1:-50585873 Msa0026670:intron
CCACAGCTACTGTCATGACA+TGG 0.547135 1_1:-50587805 Msa0026670:CDS
GCATGTACTCCACTACCAAA+TGG 0.553843 1_1:+50586474 None:intergenic
TGATAACTCCAGATTAACAC+TGG 0.555592 1_1:-50589669 None:intergenic
GGTAGATTCTCTCCAACACC+TGG 0.557087 1_1:+50585790 None:intergenic
GAAACTTCTCGAATGTGTAA+AGG 0.561471 1_1:-50587756 Msa0026670:intron
ACAAGTGCAAAACTTCCTCC+TGG 0.564113 1_1:-50589474 Msa0026670:CDS
TTCATACCTCAAATCTTGAA+GGG 0.564125 1_1:+50586608 None:intergenic
AACGCAAATGGTACTCACCT+TGG 0.565917 1_1:+50588724 None:intergenic
TAAGGCCACCCCATTGAACC+AGG 0.567074 1_1:+50589456 None:intergenic
AATTATTGGATTGTTGACAA+TGG 0.572734 1_1:-50588148 Msa0026670:CDS
TCAATGGGGTGGCCTTACAT+AGG 0.572822 1_1:-50589450 Msa0026670:CDS
TGGATGTAAGTGTGTGATGT+TGG 0.574017 1_1:-50588856 Msa0026670:CDS
CAGGATTCCTAATCCCAAAA+GGG 0.575886 1_1:-50586702 Msa0026670:CDS
GAAAGATACATCCCCTGTTG+AGG 0.578717 1_1:+50585556 None:intergenic
ATTTGATATAAATAGAGTCA+AGG 0.579853 1_1:-50585503 Msa0026670:three_prime_UTR
TATCCTACAAAATCCCATGC+AGG 0.583588 1_1:-50585604 Msa0026670:three_prime_UTR
GTATATAGGTTGGAAGTGGT+AGG 0.592193 1_1:-50585869 Msa0026670:intron
CAAGTTGCGAAGTGAATCGA+GGG 0.600200 1_1:+50588674 None:intergenic
TTGATATAAATAGAGTCAAG+GGG 0.607883 1_1:-50585501 Msa0026670:three_prime_UTR
CTTTCCACCATCAAATCTTG+GGG 0.609532 1_1:-50588627 Msa0026670:CDS
TGATGAATATTTCTGAACAG+TGG 0.615557 1_1:+50586667 None:intergenic
AGTGGAGTACATGCTTGTCC+TGG 0.616452 1_1:-50586465 Msa0026670:CDS
CCAAGTTGCGAAGTGAATCG+AGG 0.629437 1_1:+50588673 None:intergenic
CTGGCTGGGAGTCCATTCAA+AGG 0.643521 1_1:+50585809 None:intergenic
GATTCCTAATCCCAAAAGGG+TGG 0.645660 1_1:-50586699 Msa0026670:CDS
CCATGTCATGACAGTAGCTG+TGG 0.646176 1_1:+50587805 None:intergenic
GTTTGAGGAAGCTTATTCAG+AGG 0.650161 1_1:-50588704 Msa0026670:CDS
CACAGCTACTGTCATGACAT+GGG 0.650868 1_1:-50587804 Msa0026670:CDS
AAGTGGTAGGATCACACTGT+GGG 0.657629 1_1:-50585856 Msa0026670:CDS
AGATTGGAAAAGCCTCAACA+GGG 0.658055 1_1:-50585568 Msa0026670:three_prime_UTR
GTAGCTGATGTAGAGTACAA+AGG 0.662288 1_1:-50586929 Msa0026670:intron
ATCACCCCAAGATTTGATGG+TGG 0.682987 1_1:+50588623 None:intergenic
AACTTCCTCCTGGTTCAATG+GGG 0.687690 1_1:-50589464 Msa0026670:CDS
GATTGGAAAAGCCTCAACAG+GGG 0.706428 1_1:-50585567 Msa0026670:three_prime_UTR
TGAGCAGAAGACAATTCACA+TGG 0.710878 1_1:-50587248 Msa0026670:CDS
GAAGTGGTAGGATCACACTG+TGG 0.723901 1_1:-50585857 Msa0026670:CDS
GGCCACCCCATTGAACCAGG+AGG 0.736013 1_1:+50589459 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTGCTTATATTAAAAAA+CGG - chr1_1:50586009-50586028 Msa0026670:intron 10.0%
!!! TAATATATTAATTTTAGGTA+CGG - chr1_1:50586246-50586265 Msa0026670:intron 10.0%
!! CATTTAATTAAAAAAATGTA+TGG + chr1_1:50589110-50589129 None:intergenic 10.0%
!! AAAGAAAAAAGATTAATTTA+TGG + chr1_1:50589459-50589478 None:intergenic 10.0%
!!! TCAACAATTGTTTTTATATT+AGG - chr1_1:50585518-50585537 Msa0026670:three_prime_UTR 15.0%
!! AAAGAACATAAATGAAAATA+AGG + chr1_1:50585631-50585650 None:intergenic 15.0%
!!! ATAAGTAAATTTTGACTTTT+AGG - chr1_1:50585911-50585930 Msa0026670:intron 15.0%
!! AATTAAAATGTGTCTTATAT+AGG + chr1_1:50586196-50586215 None:intergenic 15.0%
!! AATGTAACTAAAAAACATTA+TGG - chr1_1:50586219-50586238 Msa0026670:intron 15.0%
!! ATAATAATCAATTCAATCAT+TGG + chr1_1:50586763-50586782 None:intergenic 15.0%
!!! TTAACTTTAGTTTATTTTCT+TGG - chr1_1:50587443-50587462 Msa0026670:intron 15.0%
!! AATAAAATGTTAGAAACAAA+AGG - chr1_1:50588850-50588869 Msa0026670:CDS 15.0%
!!! CATTTGGTTTATTATTTATA+AGG + chr1_1:50589057-50589076 None:intergenic 15.0%
!!! AATAAATGAATTTTTGCATT+TGG + chr1_1:50589073-50589092 None:intergenic 15.0%
!!! AACTATGTAATTTTTTTCAT+AGG - chr1_1:50589497-50589516 Msa0026670:CDS 15.0%
!! ATTAGAACAAGAATCTAATA+AGG + chr1_1:50585554-50585573 None:intergenic 20.0%
!! TACTTATATTAAAAAACGGA+GGG + chr1_1:50585898-50585917 None:intergenic 20.0%
!! TTACTTATATTAAAAAACGG+AGG + chr1_1:50585899-50585918 None:intergenic 20.0%
!! TATTCAATTAATGATGTATG+TGG - chr1_1:50585936-50585955 Msa0026670:intron 20.0%
!! CATTCAATTAATTATGTATG+TGG + chr1_1:50585975-50585994 None:intergenic 20.0%
!!! ATAAGCAAATTTTGACTTTT+AGG + chr1_1:50586000-50586019 None:intergenic 20.0%
!!! AATATCTAAAGTAGTCTTTA+TGG - chr1_1:50586120-50586139 Msa0026670:intron 20.0%
!!! ATGCATAATTAACACTTTTA+AGG - chr1_1:50586554-50586573 Msa0026670:intron 20.0%
!! TTTAAGGAAATGAAAAAAGT+AGG - chr1_1:50586570-50586589 Msa0026670:intron 20.0%
!!! TTTACTAAATTGTTGTTATG+TGG - chr1_1:50586836-50586855 Msa0026670:intron 20.0%
!!! TTTTACTATACTTTTTGTGA+AGG - chr1_1:50587138-50587157 Msa0026670:intron 20.0%
!!! ATATTATCTGATGATGAAAT+TGG - chr1_1:50587283-50587302 Msa0026670:intron 20.0%
!! TTTGAGTAAACATTAATTAC+TGG + chr1_1:50587512-50587531 None:intergenic 20.0%
!!! CTAAAGAATCTTTTATCATA+TGG + chr1_1:50587823-50587842 None:intergenic 20.0%
!! TAATAAACACAACAAGAATA+AGG + chr1_1:50588105-50588124 None:intergenic 20.0%
!!! AATCTAAGAATTGAATTTTG+TGG - chr1_1:50588130-50588149 Msa0026670:CDS 20.0%
!!! AAAATGGGAAATTTTTTCTA+GGG - chr1_1:50588278-50588297 Msa0026670:intron 20.0%
!! TATGAATGAGTCAATTATAA+TGG - chr1_1:50588558-50588577 Msa0026670:intron 20.0%
!! TCAATTATAATGGTAATACA+TGG - chr1_1:50588568-50588587 Msa0026670:intron 20.0%
!!! ATTTTGTTATTTGTTGATAC+AGG - chr1_1:50588626-50588645 Msa0026670:CDS 20.0%
!! TTAAATGCACAAATTCATTT+AGG - chr1_1:50589123-50589142 Msa0026670:intron 20.0%
!! AAAAGATTAATTTATGGCTA+TGG + chr1_1:50589453-50589472 None:intergenic 20.0%
!!! TATGTAATTTTTTTCATAGG+TGG - chr1_1:50589500-50589519 Msa0026670:CDS 20.0%
!!! ATGTAATTTTTTTCATAGGT+GGG - chr1_1:50589501-50589520 Msa0026670:CDS 20.0%
!! ATTTGATATAAATAGAGTCA+AGG - chr1_1:50589646-50589665 Msa0026670:five_prime_UTR 20.0%
!! TTTGATATAAATAGAGTCAA+GGG - chr1_1:50589647-50589666 Msa0026670:five_prime_UTR 20.0%
! GTTCTAATAATACACCAAAA+TGG - chr1_1:50585566-50585585 Msa0026670:three_prime_UTR 25.0%
! AAAATAAGGTAAGAAGAAAG+AGG + chr1_1:50585617-50585636 None:intergenic 25.0%
! TAAAAATGATGAGAGAAACA+TGG + chr1_1:50585819-50585838 None:intergenic 25.0%
!!! TGTTTCTCTCATCATTTTTA+TGG - chr1_1:50585819-50585838 Msa0026670:CDS 25.0%
! GTATAAATTTAATGACTCTG+CGG + chr1_1:50585874-50585893 None:intergenic 25.0%
! TTGCTTATATTAAAAAACGG+AGG - chr1_1:50586012-50586031 Msa0026670:intron 25.0%
! TGCTTATATTAAAAAACGGA+GGG - chr1_1:50586013-50586032 Msa0026670:intron 25.0%
!! AATTTAAAATCACGCGATAT+AGG + chr1_1:50586639-50586658 None:intergenic 25.0%
!! CAATTTAAAACCACAATGAT+TGG - chr1_1:50586736-50586755 Msa0026670:intron 25.0%
!! TTCTGGCATTAATTTTTGTA+TGG - chr1_1:50586812-50586831 Msa0026670:intron 25.0%
! AGGGTCAATAATTAATTAAG+TGG - chr1_1:50586881-50586900 Msa0026670:intron 25.0%
! AAGAGCTAAAGAAGAATTAT+TGG - chr1_1:50586987-50587006 Msa0026670:CDS 25.0%
! AATTATTGGATTGTTGACAA+TGG - chr1_1:50587001-50587020 Msa0026670:intron 25.0%
! GAAATTGGAGATAACATTAT+TGG - chr1_1:50587298-50587317 Msa0026670:intron 25.0%
!! AATTTCTCGAATTTTTCTCT+TGG + chr1_1:50587424-50587443 None:intergenic 25.0%
!!! ACTTTAGTTTATTTTCTTGG+CGG - chr1_1:50587446-50587465 Msa0026670:intron 25.0%
!!! TTTGTATGTTTTTGTCAAAC+AGG + chr1_1:50587625-50587644 None:intergenic 25.0%
!! TGAATATGTGTTGAGTTTTA+AGG - chr1_1:50587647-50587666 Msa0026670:intron 25.0%
!!! GCTATTTGTTTTTGTTAAAC+TGG - chr1_1:50587674-50587693 Msa0026670:intron 25.0%
! ATTAACTGCTTATACCTTAT+AGG + chr1_1:50587981-50588000 None:intergenic 25.0%
!!! TCAAACTTTGTTATTAGTGT+CGG - chr1_1:50588034-50588053 Msa0026670:intron 25.0%
!! TGAATTTTGTGGAATTTTTC+AGG - chr1_1:50588141-50588160 Msa0026670:CDS 25.0%
!!! ATTTGCAAAAGCATTCAAAA+TGG - chr1_1:50588262-50588281 Msa0026670:intron 25.0%
!!! TTTGCAAAAGCATTCAAAAT+GGG - chr1_1:50588263-50588282 Msa0026670:intron 25.0%
!!! CAAAATGGGAAATTTTTTCT+AGG - chr1_1:50588277-50588296 Msa0026670:intron 25.0%
! TTCAGCATAGTATAATAGTA+TGG + chr1_1:50588343-50588362 None:intergenic 25.0%
!! AAATGAACGTTTTTCACATT+GGG + chr1_1:50588370-50588389 None:intergenic 25.0%
!! AAAATGAACGTTTTTCACAT+TGG + chr1_1:50588371-50588390 None:intergenic 25.0%
! ATAATGGTAATACATGGTTA+AGG - chr1_1:50588574-50588593 Msa0026670:intron 25.0%
!!! CAAATGATGGATCATAATAA+GGG + chr1_1:50588733-50588752 None:intergenic 25.0%
! AATAAAAAGAGATCAACGAA+TGG - chr1_1:50588807-50588826 Msa0026670:CDS 25.0%
!! ATTTTATAACAAGTGCTCTT+AGG + chr1_1:50588944-50588963 None:intergenic 25.0%
! AGAGATATTTGATCAGTTAT+TGG + chr1_1:50589205-50589224 None:intergenic 25.0%
!! TATGTGAAAGATTTTGCTTT+TGG - chr1_1:50589258-50589277 Msa0026670:intron 25.0%
!!! AGATTTTGCTTTTGGTATAT+AGG - chr1_1:50589266-50589285 Msa0026670:intron 25.0%
! ATGCTAGAAAAAGATTCATT+GGG - chr1_1:50589385-50589404 Msa0026670:intron 25.0%
!!! GCTTTTCCAATCTTTTTTTA+AGG + chr1_1:50589574-50589593 None:intergenic 25.0%
! TTGATATAAATAGAGTCAAG+GGG - chr1_1:50589648-50589667 Msa0026670:five_prime_UTR 25.0%
TGGAGAAGAAGAAAAGATTT+GGG + chr1_1:50585752-50585771 None:intergenic 30.0%
TTGGAGAAGAAGAAAAGATT+TGG + chr1_1:50585753-50585772 None:intergenic 30.0%
TCTTCTTCTCCAAACAAAAA+AGG - chr1_1:50585760-50585779 Msa0026670:CDS 30.0%
GCAGAATTATTAGATGAGTA+TGG + chr1_1:50586065-50586084 None:intergenic 30.0%
ATTTGATTCTCTGCATGAAT+TGG + chr1_1:50586098-50586117 None:intergenic 30.0%
ATATTCAAGACGAACATTCT+TGG - chr1_1:50586273-50586292 Msa0026670:intron 30.0%
!!! TCTTTGCTTTTAGGATATGT+TGG + chr1_1:50586372-50586391 None:intergenic 30.0%
!! ATCAAACGTTCTTTGCTTTT+AGG + chr1_1:50586381-50586400 None:intergenic 30.0%
AAAAGCAAAGAACGTTTGAT+TGG - chr1_1:50586381-50586400 Msa0026670:intron 30.0%
! TATCGCGTGATTTTAAATTG+CGG - chr1_1:50586640-50586659 Msa0026670:CDS 30.0%
ACTTGAATCACATTTGAGTA+AGG + chr1_1:50586707-50586726 None:intergenic 30.0%
! ATATTGAAGTGTCACATTTC+TGG - chr1_1:50586795-50586814 Msa0026670:intron 30.0%
AAACTGCAAAAGATCAAAGA+TGG + chr1_1:50586912-50586931 None:intergenic 30.0%
!!! TTGCAGTTTTCTTTTGAAGT+TGG - chr1_1:50586923-50586942 Msa0026670:intron 30.0%
! GTTGGTATTCTCAAAGTTTT+TGG - chr1_1:50586941-50586960 Msa0026670:CDS 30.0%
!! ACAATACAAAAAAGCACTCT+TGG - chr1_1:50587057-50587076 Msa0026670:intron 30.0%
!!! GAAACTTGGAAGTATTTTGA+AGG - chr1_1:50587168-50587187 Msa0026670:intron 30.0%
TGAAGGAAATAATTAGTGAG+AGG - chr1_1:50587185-50587204 Msa0026670:intron 30.0%
!!! TTTTGAGCTGTTTCTTGAAT+TGG - chr1_1:50587242-50587261 Msa0026670:CDS 30.0%
TTTACACATTCGAGAAGTTT+CGG + chr1_1:50587394-50587413 None:intergenic 30.0%
TCAAGTGAGACTATAATTTG+TGG - chr1_1:50587859-50587878 Msa0026670:CDS 30.0%
ACAATTCACATGGAAAATGA+TGG - chr1_1:50587911-50587930 Msa0026670:CDS 30.0%
AAACATGCCAATTACCTATA+AGG - chr1_1:50587964-50587983 Msa0026670:CDS 30.0%
GCTTATACCTTATAGGTAAT+TGG + chr1_1:50587974-50587993 None:intergenic 30.0%
ACATGAGAATATTATGAACC+AGG - chr1_1:50588428-50588447 Msa0026670:intron 30.0%
! TGATGAATATTTCTGAACAG+TGG + chr1_1:50588485-50588504 None:intergenic 30.0%
TTCATACCTCAAATCTTGAA+GGG + chr1_1:50588544-50588563 None:intergenic 30.0%
ATTCATACCTCAAATCTTGA+AGG + chr1_1:50588545-50588564 None:intergenic 30.0%
!! CCAAATGATGGATCATAATA+AGG + chr1_1:50588734-50588753 None:intergenic 30.0%
CCTTATTATGATCCATCATT+TGG - chr1_1:50588731-50588750 Msa0026670:CDS 30.0%
AACAAAAGGAGATCAATGAA+TGG - chr1_1:50588864-50588883 Msa0026670:CDS 30.0%
! TTTCTTTTTCTTCCTTAGAG+TGG - chr1_1:50589020-50589039 Msa0026670:intron 30.0%
!! TTTGCTTTTGGTATATAGGT+TGG - chr1_1:50589270-50589289 Msa0026670:intron 30.0%
CATGCTAGAAAAAGATTCAT+TGG - chr1_1:50589384-50589403 Msa0026670:intron 30.0%
TGCTAGAAAAAGATTCATTG+GGG - chr1_1:50589386-50589405 Msa0026670:intron 30.0%
TAATTTATGGCTATGGAAAG+TGG + chr1_1:50589446-50589465 None:intergenic 30.0%
! CACCAAAATGGATTCAACTT+TGG - chr1_1:50585578-50585597 Msa0026670:three_prime_UTR 35.0%
! AGCCAAAGTTGAATCCATTT+TGG + chr1_1:50585583-50585602 None:intergenic 35.0%
!! TGTTTTGTTCTAGGTCGTTT+TGG + chr1_1:50585654-50585673 None:intergenic 35.0%
!!! GCACTTGTTTGTTTTGTTCT+AGG + chr1_1:50585663-50585682 None:intergenic 35.0%
GAAGAAAAGATTTGGGTCTT+GGG + chr1_1:50585745-50585764 None:intergenic 35.0%
AGAAGAAAAGATTTGGGTCT+TGG + chr1_1:50585746-50585765 None:intergenic 35.0%
!!! GCATAGCAACCTTTTTTGTT+TGG + chr1_1:50585772-50585791 None:intergenic 35.0%
AAATGATGAGAGAAACATGG+AGG + chr1_1:50585816-50585835 None:intergenic 35.0%
TAAATTTAATGACTCTGCGG+TGG + chr1_1:50585871-50585890 None:intergenic 35.0%
!! TGCATGAATTGGATTAGTCA+CGG + chr1_1:50586087-50586106 None:intergenic 35.0%
CTAAAGTAGTCTTTATGGTG+TGG - chr1_1:50586125-50586144 Msa0026670:intron 35.0%
AATCATTGGTCCAATCATTG+TGG + chr1_1:50586749-50586768 None:intergenic 35.0%
TGTGATGTGTGGAACAATAA+AGG - chr1_1:50586861-50586880 Msa0026670:intron 35.0%
GTGATGTGTGGAACAATAAA+GGG - chr1_1:50586862-50586881 Msa0026670:intron 35.0%
TGCAAAAGATCAAAGATGGA+CGG + chr1_1:50586908-50586927 None:intergenic 35.0%
! TCTTTTCCAACTCAAATTCC+TGG - chr1_1:50587031-50587050 Msa0026670:intron 35.0%
!!! GCTTTTTTGTATTGTGTACC+AGG + chr1_1:50587052-50587071 None:intergenic 35.0%
GGAAATAATTAGTGAGAGGA+AGG - chr1_1:50587189-50587208 Msa0026670:CDS 35.0%
!! AGCTGTTTCTTGAATTGGAA+AGG - chr1_1:50587247-50587266 Msa0026670:CDS 35.0%
TTCTTGAATTGGAAAGGAGA+AGG - chr1_1:50587253-50587272 Msa0026670:CDS 35.0%
GAAACTTCTCGAATGTGTAA+AGG - chr1_1:50587393-50587412 Msa0026670:intron 35.0%
! TATTTTCTTGGCGGTTTCTA+CGG - chr1_1:50587455-50587474 Msa0026670:intron 35.0%
!!! ATGTGTTGAGTTTTAAGGCA+TGG - chr1_1:50587652-50587671 Msa0026670:intron 35.0%
! TTTTGTTAAGTACCAGACCA+TGG - chr1_1:50587793-50587812 Msa0026670:CDS 35.0%
! TTTTATCATATGGTCCACCA+TGG + chr1_1:50587813-50587832 None:intergenic 35.0%
ATGGTAAACTACAGCTGAAT+TGG - chr1_1:50587930-50587949 Msa0026670:CDS 35.0%
!!! TGGAATTTTTCAGGTTGTGT+TGG - chr1_1:50588150-50588169 Msa0026670:CDS 35.0%
ATAGCTGTGACATTACATAG+TGG + chr1_1:50588313-50588332 None:intergenic 35.0%
CTTGAAGGGTTGAATTTATG+AGG + chr1_1:50588530-50588549 None:intergenic 35.0%
ATTCAACCCTTCAAGATTTG+AGG - chr1_1:50588535-50588554 Msa0026670:intron 35.0%
!!! GGCATGAAAGTATTTGGTTT+TGG + chr1_1:50588657-50588676 None:intergenic 35.0%
!! CCAAATGGCATGAAAGTATT+TGG + chr1_1:50588663-50588682 None:intergenic 35.0%
CCAAATACTTTCATGCCATT+TGG - chr1_1:50588660-50588679 Msa0026670:CDS 35.0%
TAAACTTGACGACCAAATGA+TGG + chr1_1:50588746-50588765 None:intergenic 35.0%
ATCATTTGGTCGTCAAGTTT+AGG - chr1_1:50588745-50588764 Msa0026670:CDS 35.0%
GTATATAGTTGTCCACTCTA+AGG + chr1_1:50589035-50589054 None:intergenic 35.0%
! TTTGGTATATAGGTTGGAAG+TGG - chr1_1:50589276-50589295 Msa0026670:intron 35.0%
CATTCAAAGGCAATGGAAAT+GGG + chr1_1:50589330-50589349 None:intergenic 35.0%
!! TGAATCTTTTTCTAGCATGC+TGG + chr1_1:50589383-50589402 None:intergenic 35.0%
! ATGGGATTTTGTAGGATAGA+GGG + chr1_1:50589543-50589562 None:intergenic 35.0%
AGGCGTCCTTAAAAAAAGAT+TGG - chr1_1:50589565-50589584 Msa0026670:CDS 35.0%
TAAATAGAGTCAAGGGGATT+TGG - chr1_1:50589654-50589673 Msa0026670:five_prime_UTR 35.0%
AAAACTTCCTCCTGGTTCAA+TGG - chr1_1:50585683-50585702 Msa0026670:three_prime_UTR 40.0%
AAACTTCCTCCTGGTTCAAT+GGG - chr1_1:50585684-50585703 Msa0026670:three_prime_UTR 40.0%
TGAAGGGTTTGTCCTATGTA+AGG + chr1_1:50585714-50585733 None:intergenic 40.0%
GGTCGATTGTAGATGATATG+AGG - chr1_1:50586146-50586165 Msa0026670:intron 40.0%
TGGATGTAAGTGTGTGATGT+TGG - chr1_1:50586293-50586312 Msa0026670:intron 40.0%
TGGTGGAAAAACAAAGCACA+AGG + chr1_1:50586408-50586427 None:intergenic 40.0%
!!! TGTGCTTTGTTTTTCCACCA+AGG - chr1_1:50586408-50586427 Msa0026670:CDS 40.0%
TAAGCTTCCTCAAACGCAAA+TGG + chr1_1:50586440-50586459 None:intergenic 40.0%
GTTTGAGGAAGCTTATTCAG+AGG - chr1_1:50586445-50586464 Msa0026670:CDS 40.0%
!! CCAAGATTTGATGGTGGAAA+GGG + chr1_1:50586523-50586542 None:intergenic 40.0%
CCTTTCCACCATCAAATCTT+GGG - chr1_1:50586521-50586540 Msa0026670:intron 40.0%
CTTTCCACCATCAAATCTTG+GGG - chr1_1:50586522-50586541 Msa0026670:intron 40.0%
ATCATCACCCCAAGATTTGA+TGG + chr1_1:50586532-50586551 None:intergenic 40.0%
ATCAAATCTTGGGGTGATGA+TGG - chr1_1:50586531-50586550 Msa0026670:intron 40.0%
GTTATGTGGAATGTGATGTG+TGG - chr1_1:50586850-50586869 Msa0026670:intron 40.0%
!! TTTTTGGCAATCTAGAGCCA+AGG - chr1_1:50586957-50586976 Msa0026670:CDS 40.0%
TGTGTACCAGGAATTTGAGT+TGG + chr1_1:50587040-50587059 None:intergenic 40.0%
TTGAATTGGAAAGGAGAAGG+AGG - chr1_1:50587256-50587275 Msa0026670:intron 40.0%
ACTCGACAGTAAAAACGAAG+AGG + chr1_1:50587582-50587601 None:intergenic 40.0%
TGTCGAGTCGTCAATCTAAT+TGG - chr1_1:50587594-50587613 Msa0026670:intron 40.0%
! TGTGGTAATGCTTGCTTTGT+AGG - chr1_1:50587877-50587896 Msa0026670:CDS 40.0%
TGAGCAGAAGACAATTCACA+TGG - chr1_1:50587901-50587920 Msa0026670:CDS 40.0%
TCAGCTACTGCTTCTCTAAA+TGG + chr1_1:50588208-50588227 None:intergenic 40.0%
GTAGCTGATGTAGAGTACAA+AGG - chr1_1:50588220-50588239 Msa0026670:CDS 40.0%
CAGGATTCCTAATCCCAAAA+GGG - chr1_1:50588447-50588466 Msa0026670:intron 40.0%
!! TGAGGCTCTGGAAAAAATTC+AGG + chr1_1:50588512-50588531 None:intergenic 40.0%
! ACTTTCATGCCATTTGGTAG+TGG - chr1_1:50588666-50588685 Msa0026670:CDS 40.0%
! GTATATAGGTTGGAAGTGGT+AGG - chr1_1:50589280-50589299 Msa0026670:intron 40.0%
TCACACTGTGGGATTCAATA+TGG - chr1_1:50589304-50589323 Msa0026670:intron 40.0%
CCATTCAAAGGCAATGGAAA+TGG + chr1_1:50589331-50589350 None:intergenic 40.0%
CCATTTCCATTGCCTTTGAA+TGG - chr1_1:50589328-50589347 Msa0026670:intron 40.0%
! TGGGATTTTGTAGGATAGAG+GGG + chr1_1:50589542-50589561 None:intergenic 40.0%
! CATGGGATTTTGTAGGATAG+AGG + chr1_1:50589544-50589563 None:intergenic 40.0%
TATCCTACAAAATCCCATGC+AGG - chr1_1:50589545-50589564 Msa0026670:CDS 40.0%
!!! TTTTTTAAGGACGCCTGCAT+GGG + chr1_1:50589561-50589580 None:intergenic 40.0%
!!! TTTTTTTAAGGACGCCTGCA+TGG + chr1_1:50589562-50589581 None:intergenic 40.0%
AAGATTGGAAAAGCCTCAAC+AGG - chr1_1:50589580-50589599 Msa0026670:exon 40.0%
AGATTGGAAAAGCCTCAACA+GGG - chr1_1:50589581-50589600 Msa0026670:exon 40.0%
ACAAGTGCAAAACTTCCTCC+TGG - chr1_1:50585675-50585694 Msa0026670:three_prime_UTR 45.0%
AACTTCCTCCTGGTTCAATG+GGG - chr1_1:50585685-50585704 Msa0026670:three_prime_UTR 45.0%
GTCTTGGGAGTAGAGTTGAA+GGG + chr1_1:50585730-50585749 None:intergenic 45.0%
TGATGAGAGAAACATGGAGG+CGG + chr1_1:50585813-50585832 None:intergenic 45.0%
AACACAAAACGTGCAGCTTC+AGG + chr1_1:50586324-50586343 None:intergenic 45.0%
! TGAAGCTGCACGTTTTGTGT+TGG - chr1_1:50586323-50586342 Msa0026670:intron 45.0%
AACGCAAATGGTACTCACCT+TGG + chr1_1:50586428-50586447 None:intergenic 45.0%
GTGAGTACCATTTGCGTTTG+AGG - chr1_1:50586430-50586449 Msa0026670:CDS 45.0%
CAAGTTGCGAAGTGAATCGA+GGG + chr1_1:50586478-50586497 None:intergenic 45.0%
AGGGCTAAGGCTTCAATTTC+AGG + chr1_1:50586504-50586523 None:intergenic 45.0%
!! TTTGATGGTGGAAAGGGCTA+AGG + chr1_1:50586517-50586536 None:intergenic 45.0%
CCCTTTCCACCATCAAATCT+TGG - chr1_1:50586520-50586539 Msa0026670:intron 45.0%
!! CCCAAGATTTGATGGTGGAA+AGG + chr1_1:50586524-50586543 None:intergenic 45.0%
ATCACCCCAAGATTTGATGG+TGG + chr1_1:50586529-50586548 None:intergenic 45.0%
AATTGCGGCTGTAGTCACAT+TGG - chr1_1:50586655-50586674 Msa0026670:CDS 45.0%
! CAATCTAGAGCCAAGGTTGA+GGG - chr1_1:50586964-50586983 Msa0026670:CDS 45.0%
!! TTTAGCTCTTCCCTCAACCT+TGG + chr1_1:50586977-50586996 None:intergenic 45.0%
GTGAAGGCAAGAGAGAAACT+TGG - chr1_1:50587154-50587173 Msa0026670:intron 45.0%
CACAGCTACTGTCATGACAT+GGG - chr1_1:50587345-50587364 Msa0026670:intron 45.0%
TGTTAAGTACCAGACCATGG+TGG - chr1_1:50587796-50587815 Msa0026670:CDS 45.0%
!! TTAGTGTCGGCATTTATGCG+CGG - chr1_1:50588047-50588066 Msa0026670:intron 45.0%
!!! CCTTTTGGGATTAGGAATCC+TGG + chr1_1:50588449-50588468 None:intergenic 45.0%
CCAGGATTCCTAATCCCAAA+AGG - chr1_1:50588446-50588465 Msa0026670:intron 45.0%
GATTCCTAATCCCAAAAGGG+TGG - chr1_1:50588450-50588469 Msa0026670:intron 45.0%
!!! CTTTCCACCCTTTTGGGATT+AGG + chr1_1:50588457-50588476 None:intergenic 45.0%
! GCATTGCTTTCCACCCTTTT+GGG + chr1_1:50588463-50588482 None:intergenic 45.0%
GGGTTGAATTTATGAGGCTC+TGG + chr1_1:50588524-50588543 None:intergenic 45.0%
GCATGTACTCCACTACCAAA+TGG + chr1_1:50588678-50588697 None:intergenic 45.0%
AAGTGGTAGGATCACACTGT+GGG - chr1_1:50589293-50589312 Msa0026670:intron 45.0%
! GGGATTTTGTAGGATAGAGG+GGG + chr1_1:50589541-50589560 None:intergenic 45.0%
GATTGGAAAAGCCTCAACAG+GGG - chr1_1:50589582-50589601 Msa0026670:exon 45.0%
GAAAGATACATCCCCTGTTG+AGG + chr1_1:50589596-50589615 None:intergenic 45.0%
!! AATTTACTTATATTAAAAAA+CGG + chr1_1:50585902-50585921 None:intergenic 5.0%
!!! GTTATTAATATATTAATTTT+AGG - chr1_1:50586241-50586260 Msa0026670:intron 5.0%
! TCAATGGGGTGGCCTTACAT+AGG - chr1_1:50585699-50585718 Msa0026670:three_prime_UTR 50.0%
GGTCTTGGGAGTAGAGTTGA+AGG + chr1_1:50585731-50585750 None:intergenic 50.0%
GCAAATGGTACTCACCTTGG+TGG + chr1_1:50586425-50586444 None:intergenic 50.0%
CCAAGTTGCGAAGTGAATCG+AGG + chr1_1:50586479-50586498 None:intergenic 50.0%
CCTCGATTCACTTCGCAACT+TGG - chr1_1:50586476-50586495 Msa0026670:CDS 50.0%
! GCAATCTAGAGCCAAGGTTG+AGG - chr1_1:50586963-50586982 Msa0026670:CDS 50.0%
!! TGGAGTGCTTTTTGCTGCTC+AGG - chr1_1:50587318-50587337 Msa0026670:intron 50.0%
CCATGTCATGACAGTAGCTG+TGG + chr1_1:50587347-50587366 None:intergenic 50.0%
CCACAGCTACTGTCATGACA+TGG - chr1_1:50587344-50587363 Msa0026670:intron 50.0%
TTTCTTGGCGGTTTCTACGG+TGG - chr1_1:50587458-50587477 Msa0026670:intron 50.0%
!! CTACGGTGGACTGCTTTGAT+AGG - chr1_1:50587472-50587491 Msa0026670:intron 50.0%
TCATATGGTCCACCATGGTC+TGG + chr1_1:50587808-50587827 None:intergenic 50.0%
! GGCATTGCTTTCCACCCTTT+TGG + chr1_1:50588464-50588483 None:intergenic 50.0%
AGTGGAGTACATGCTTGTCC+TGG - chr1_1:50588684-50588703 Msa0026670:CDS 50.0%
AGCTTAGCAAGCTCATTGCC+AGG + chr1_1:50588705-50588724 None:intergenic 50.0%
!! TGGCAATGAGCTTGCTAAGC+TGG - chr1_1:50588704-50588723 Msa0026670:CDS 50.0%
GAAGTGGTAGGATCACACTG+TGG - chr1_1:50589292-50589311 Msa0026670:intron 50.0%
GGGAGTCCATTCAAAGGCAA+TGG + chr1_1:50589337-50589356 None:intergenic 50.0%
ATTCTCTCCAACACCTGGCT+GGG + chr1_1:50589357-50589376 None:intergenic 50.0%
GGTAGATTCTCTCCAACACC+TGG + chr1_1:50589362-50589381 None:intergenic 50.0%
! ACGCCTGCATGGGATTTTGT+AGG + chr1_1:50589551-50589570 None:intergenic 50.0%
TTCCTCCTGGTTCAATGGGG+TGG - chr1_1:50585688-50585707 Msa0026670:three_prime_UTR 55.0%
TAAGGCCACCCCATTGAACC+AGG + chr1_1:50585696-50585715 None:intergenic 55.0%
GAGGCGGAGTGGAACTAGAT+AGG + chr1_1:50585797-50585816 None:intergenic 55.0%
AGAGAAACATGGAGGCGGAG+TGG + chr1_1:50585808-50585827 None:intergenic 55.0%
!! CGGTGGACTGCTTTGATAGG+TGG - chr1_1:50587475-50587494 Msa0026670:intron 55.0%
CTGGCTGGGAGTCCATTCAA+AGG + chr1_1:50589343-50589362 None:intergenic 55.0%
! CTTTGAATGGACTCCCAGCC+AGG - chr1_1:50589341-50589360 Msa0026670:intron 55.0%
GATTCTCTCCAACACCTGGC+TGG + chr1_1:50589358-50589377 None:intergenic 55.0%
! GTGTCGGCATTTATGCGCGG+AGG - chr1_1:50588050-50588069 Msa0026670:intron 60.0%
ATGGACTCCCAGCCAGGTGT+TGG - chr1_1:50589347-50589366 Msa0026670:intron 60.0%
GGCCACCCCATTGAACCAGG+AGG + chr1_1:50585693-50585712 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 50585494 50589677 50585494 ID=Msa0026670;Name=Msa0026670
chr1_1 mRNA 50585494 50589677 50585494 ID=Msa0026670-mRNA-1;Parent=Msa0026670;Name=Msa0026670-mRNA-1;_AED=0.15;_eAED=0.15;_QI=91|1|1|1|1|1|9|260|482
chr1_1 exon 50585494 50585883 50585494 ID=Msa0026670-mRNA-1:exon:14685;Parent=Msa0026670-mRNA-1
chr1_1 exon 50586405 50586523 50586405 ID=Msa0026670-mRNA-1:exon:14684;Parent=Msa0026670-mRNA-1
chr1_1 exon 50586615 50586721 50586615 ID=Msa0026670-mRNA-1:exon:14683;Parent=Msa0026670-mRNA-1
chr1_1 exon 50586930 50587008 50586930 ID=Msa0026670-mRNA-1:exon:14682;Parent=Msa0026670-mRNA-1
chr1_1 exon 50587186 50587272 50587186 ID=Msa0026670-mRNA-1:exon:14681;Parent=Msa0026670-mRNA-1
chr1_1 exon 50587757 50588011 50587757 ID=Msa0026670-mRNA-1:exon:14680;Parent=Msa0026670-mRNA-1
chr1_1 exon 50588093 50588242 50588093 ID=Msa0026670-mRNA-1:exon:14679;Parent=Msa0026670-mRNA-1
chr1_1 exon 50588584 50588908 50588584 ID=Msa0026670-mRNA-1:exon:14678;Parent=Msa0026670-mRNA-1
chr1_1 exon 50589390 50589677 50589390 ID=Msa0026670-mRNA-1:exon:14677;Parent=Msa0026670-mRNA-1
chr1_1 five_prime_UTR 50589587 50589677 50589587 ID=Msa0026670-mRNA-1:five_prime_utr;Parent=Msa0026670-mRNA-1
chr1_1 CDS 50589390 50589586 50589390 ID=Msa0026670-mRNA-1:cds;Parent=Msa0026670-mRNA-1
chr1_1 CDS 50588584 50588908 50588584 ID=Msa0026670-mRNA-1:cds;Parent=Msa0026670-mRNA-1
chr1_1 CDS 50588093 50588242 50588093 ID=Msa0026670-mRNA-1:cds;Parent=Msa0026670-mRNA-1
chr1_1 CDS 50587757 50588011 50587757 ID=Msa0026670-mRNA-1:cds;Parent=Msa0026670-mRNA-1
chr1_1 CDS 50587186 50587272 50587186 ID=Msa0026670-mRNA-1:cds;Parent=Msa0026670-mRNA-1
chr1_1 CDS 50586930 50587008 50586930 ID=Msa0026670-mRNA-1:cds;Parent=Msa0026670-mRNA-1
chr1_1 CDS 50586615 50586721 50586615 ID=Msa0026670-mRNA-1:cds;Parent=Msa0026670-mRNA-1
chr1_1 CDS 50586405 50586523 50586405 ID=Msa0026670-mRNA-1:cds;Parent=Msa0026670-mRNA-1
chr1_1 CDS 50585754 50585883 50585754 ID=Msa0026670-mRNA-1:cds;Parent=Msa0026670-mRNA-1
chr1_1 three_prime_UTR 50585494 50585753 50585494 ID=Msa0026670-mRNA-1:three_prime_utr;Parent=Msa0026670-mRNA-1
Gene Sequence

>Msa0026670

ATGGATTCAACTTTGGCTTACATCATTGTCCTCTTTCTTCTTACCTTATTTTCATTTATGTTCTTTCCAAAACGACCTAGAACAAAACAAACAAGTGCAAAACTTCCTCCTGGTTCAATGGGGTGGCCTTACATAGGACAAACCCTTCAACTCTACTCCCAAGACCCAAATCTTTTCTTCTTCTCCAAACAAAAAAGGTACGGAGAAATATTCAAGACGAACATTCTTGGATGTAAGTGTGTGATGTTGGCAAGTCCTGAAGCTGCACGTTTTGTGTTGGTGACACAATCTCACTTATTTAAACCAACATATCCTAAAAGCAAAGAACGTTTGATTGGTCCTTGTGCTTTGTTTTTCCACCAAGGTGAGTACCATTTGCGTTTGAGGAAGCTTATTCAGAGGTCTCTCTCCCTCGATTCACTTCGCAACTTGGTTCCTGAAATTGAAGCCTTAGCCCTTTCCACCATCAAATCTTGGGGTGATGATGGATGCATAATTAACACTTTTAAGGAAATGAAAAAATTTTCTTTTGAAGTTGGTATTCTCAAAGTTTTTGGCAATCTAGAGCCAAGGTTGAGGGAAGAGCTAAAGAAGAATTATTGGATTGTTGACAATGGTTACAATTCTTTTCCAACTCAAATTCCTGGTACACAATACAAAAAAGCACTCTTGGCAAGAGAGAAACTTGGAAGTATTTTGAAGGAAATAATTAGTGAGAGGAAGGAGAAGAAGTTGCTTGAAAGTGAAAGAGATCTTTTGAGCTGTTTCTTGAATTGGAAAGGAGAAGGAGGAGAAATATTATCTGATGATGAAATTGGAGATAACATTATTGGAGTGCTTTTTGCTGCTCAGGATACCACAGCTACTGTCATGACATGGGTGATCAAGTACTTGCATGATGAACCGAAACTTCTCGAATGTGTAAAGGCTGAGCAGAAGACAATTCACATGGAAAATGATGGTAAACTACAGCTGAATTGGAATCAGACTAGAAACATGCCAATTACCTATAAGGTTGTGTTGGAGAGCATGAGAATAGCAAGTGTTATATCATTTCCATTTAGAGAAGCAGTAGCTGATGTAGAGTACAAAGGATTCCTAATCCCAAAAGGGTGGAAAGCAATGCCACTGTTCAGAAATATTCATCATAATCCTGAATTTTTTCCAGAGCCTCATAAATTCAACCCTTCAAGATTTGAGGTTTCACCAAAACCAAATACTTTCATGCCATTTGGTAGTGGAGTACATGCTTGTCCTGGCAATGAGCTTGCTAAGCTGGAGACCCTTATTATGATCCATCATTTGGTCGTCAAGTTTAGGTTGGAAGTGGTAGGATCACACTGTGGGATTCAATATGGCCCATTTCCATTGCCTTTGAATGGACTCCCAGCCAGGTGTTGGAGAGAATCTACCAGCATGCTAGAAAAAGATTCATTGGGGAAGAAATGA
Protein sequence

>Msa0026670

MDSTLAYIIVLFLLTLFSFMFFPKRPRTKQTSAKLPPGSMGWPYIGQTLQLYSQDPNLFFFSKQKRYGEIFKTNILGCKCVMLASPEAARFVLVTQSHLFKPTYPKSKERLIGPCALFFHQGEYHLRLRKLIQRSLSLDSLRNLVPEIEALALSTIKSWGDDGCIINTFKEMKKFSFEVGILKVFGNLEPRLREELKKNYWIVDNGYNSFPTQIPGTQYKKALLAREKLGSILKEIISERKEKKLLESERDLLSCFLNWKGEGGEILSDDEIGDNIIGVLFAAQDTTATVMTWVIKYLHDEPKLLECVKAEQKTIHMENDGKLQLNWNQTRNMPITYKVVLESMRIASVISFPFREAVADVEYKGFLIPKGWKAMPLFRNIHHNPEFFPEPHKFNPSRFEVSPKPNTFMPFGSGVHACPGNELAKLETLIMIHHLVVKFRLEVVGSHCGIQYGPFPLPLNGLPARCWRESTSMLEKDSLGKK*