AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0109490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0109490 MtrunA17_Chr1g0166371 95.114 307 14 1 1 307 1 306 0.0 575
Msa0109490 MtrunA17_Chr1g0166361 80.992 242 46 0 66 307 1 242 3.89e-147 413
Msa0109490 MtrunA17_Chr6g0483681 45.307 309 150 6 6 306 15 312 1.15e-81 249
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0109490 AT5G43860.1 60.518 309 113 3 3 302 4 312 1.08e-137 392
Msa0109490 AT1G19670.1 44.521 292 156 5 8 296 18 306 3.26e-81 249

Find 60 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGCTAACTTGTCAAAATT+TGG 0.166079 1_3:+21490150 None:intergenic
GTTGCAATCAAGAGAGATTT+TGG 0.211333 1_3:+21491659 None:intergenic
GATATGGCAACATTGGTTAT+TGG 0.252852 1_3:-21489952 Msa0109490:CDS
GCAACATTGGTTATTGGTTC+TGG 0.258641 1_3:-21489946 Msa0109490:CDS
TTTCCTCTCTTAGTTGTATA+CGG 0.291769 1_3:-21490271 Msa0109490:intron
CTGTAGCTGCAATAACAAAT+TGG 0.301199 1_3:-21490215 Msa0109490:CDS
TTGGTTATTGGTTCTGGTTT+AGG 0.306609 1_3:-21489940 Msa0109490:CDS
TCATTCATTTGATTACGATA+TGG 0.311804 1_3:-21489968 Msa0109490:CDS
CCTTTATCCATTCCATCAAC+TGG 0.334016 1_3:+21490027 None:intergenic
GCGAATGTGAGAAACCTTCT+TGG 0.345248 1_3:-21489849 Msa0109490:CDS
GTTTCCTCCTTGTGCACCTA+AGG 0.368936 1_3:-21489896 Msa0109490:CDS
GATATTTGTTGGAGGAGTTA+TGG 0.375257 1_3:-21489710 Msa0109490:CDS
TGTTCACGTACACAACAATA+TGG 0.376449 1_3:-21491771 Msa0109490:intron
TAAATCTCTTCAGTTATATC+AGG 0.384754 1_3:+21490240 None:intergenic
GATGATACTAAAGGAGTTAG+AGG 0.384847 1_3:-21489784 Msa0109490:CDS
CCAGTTGATGGAATGGATAA+AGG 0.394237 1_3:-21490027 Msa0109490:CDS
ATTGAGCATGTTGCTTCTCA+TGG 0.404351 1_3:-21491557 Msa0109490:CDS
CTTCATTGTCATTGCTCCTC+AGG 0.404622 1_3:-21491534 Msa0109490:intron
ACTATACCACTAAGCTACTA+AGG 0.427307 1_3:-21491803 Msa0109490:CDS
CCTCCAACAAATATCCTCAT+AGG 0.439805 1_3:+21489718 None:intergenic
GGGAAATCTCCACCTTCAAT+AGG 0.443716 1_3:+21491635 None:intergenic
AGTTATTGTTTATGTAAGAA+TGG 0.447160 1_3:-21489754 Msa0109490:CDS
TTGATTGCAACTCCTATTGA+AGG 0.448310 1_3:-21491647 Msa0109490:CDS
ATCAACCCTTAGTAGCTTAG+TGG 0.451335 1_3:+21491797 None:intergenic
TGAGGAACATAGGTGAGAAT+TGG 0.464534 1_3:+21489988 None:intergenic
ATAGGAGTTGATCCAGTTGA+TGG 0.466790 1_3:-21490039 Msa0109490:CDS
TTTCCTCCTTGTGCACCTAA+GGG 0.470069 1_3:-21489895 Msa0109490:CDS
CACATGTAATTCAACTAATG+AGG 0.475882 1_3:-21489545 Msa0109490:three_prime_UTR
TTATGGTCATGTTGATATGT+TGG 0.487257 1_3:-21489809 Msa0109490:CDS
AAACCTATGAGGATATTTGT+TGG 0.491421 1_3:-21489721 Msa0109490:CDS
TCTTAGTTGTATACGGTGGC+TGG 0.500060 1_3:-21490264 Msa0109490:intron
ATAACAAATTGGCTATCTAA+AGG 0.506043 1_3:-21490204 Msa0109490:CDS
TATGTAAGAATGGTGAATCA+AGG 0.508849 1_3:-21489744 Msa0109490:CDS
TTTGACAAGTTAGCACTTGG+TGG 0.520012 1_3:-21490144 Msa0109490:CDS
TGATTACGATATGGCAACAT+TGG 0.527494 1_3:-21489959 Msa0109490:CDS
TCCTCATGATTGACACCCTT+AGG 0.545231 1_3:+21489880 None:intergenic
AGTTGATCCAGTTGATGGAA+TGG 0.545451 1_3:-21490034 Msa0109490:CDS
TTCTTGAAAGCTTATTTGCA+TGG 0.546906 1_3:-21489682 Msa0109490:CDS
TAATCAAATTTCATCTCAAG+AGG 0.556121 1_3:+21489613 None:intergenic
ATATCGTAATCAAATGAATG+AGG 0.572490 1_3:+21489970 None:intergenic
ATCAAATGAATGAGGAACAT+AGG 0.578505 1_3:+21489978 None:intergenic
CCTATGAGGATATTTGTTGG+AGG 0.580420 1_3:-21489718 Msa0109490:CDS
GTGAATCAAGGAAACCTATG+AGG 0.584276 1_3:-21489732 Msa0109490:CDS
GGAACATAGGTGAGAATTGG+TGG 0.587964 1_3:+21489991 None:intergenic
GTGCACAAGGAGGAAACAAA+GGG 0.590331 1_3:+21489902 None:intergenic
TTAGCCACAAAATACCAAGA+AGG 0.593683 1_3:+21489835 None:intergenic
TTGGTGGTCATAGTCGCGGC+GGG 0.594950 1_3:-21490128 Msa0109490:CDS
ATTGCAACTCCTATTGAAGG+TGG 0.601589 1_3:-21491644 Msa0109490:CDS
GGTGCACAAGGAGGAAACAA+AGG 0.615241 1_3:+21489901 None:intergenic
CTATACCACTAAGCTACTAA+GGG 0.617726 1_3:-21491802 Msa0109490:CDS
ATGATACTAAAGGAGTTAGA+GGG 0.619958 1_3:-21489783 Msa0109490:CDS
CACATAACTGATGATAGTTG+AGG 0.622996 1_3:+21491858 None:intergenic
TTATTTGCATGGTGATAATG+TGG 0.630656 1_3:-21489671 Msa0109490:CDS
CCTCTCTTAGTTGTATACGG+TGG 0.634151 1_3:-21490268 Msa0109490:intron
ACCTAAGGGTGTCAATCATG+AGG 0.653818 1_3:-21489881 Msa0109490:CDS
CTTGGTGGTCATAGTCGCGG+CGG 0.660141 1_3:-21490129 Msa0109490:CDS
GCACTTGGTGGTCATAGTCG+CGG 0.661508 1_3:-21490132 Msa0109490:CDS
TTGACACCCTTAGGTGCACA+AGG 0.662635 1_3:+21489889 None:intergenic
ATGTTGGATGATGATACTAA+AGG 0.689048 1_3:-21489793 Msa0109490:CDS
ACACCCTTAGGTGCACAAGG+AGG 0.758140 1_3:+21489892 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATCATTAAAAACATTATT+AGG - chr1_3:21489997-21490016 Msa0109490:CDS 10.0%
!! ATATTATAACATAAGAAAAT+TGG - chr1_3:21490472-21490491 Msa0109490:intron 10.0%
!! AATTTCTTATAAAATCATAA+GGG + chr1_3:21490588-21490607 None:intergenic 10.0%
!! AAATTTCTTATAAAATCATA+AGG + chr1_3:21490589-21490608 None:intergenic 10.0%
!! TAATCATTAAAAACATTATT+AGG - chr1_3:21489997-21490016 Msa0109490:CDS 10.0%
!! ATATTATAACATAAGAAAAT+TGG - chr1_3:21490472-21490491 Msa0109490:intron 10.0%
!! AATTTCTTATAAAATCATAA+GGG + chr1_3:21490588-21490607 None:intergenic 10.0%
!! AAATTTCTTATAAAATCATA+AGG + chr1_3:21490589-21490608 None:intergenic 10.0%
!! TACATATTAAAATGTCAAAT+AGG + chr1_3:21489864-21489883 None:intergenic 15.0%
!!! TTTTAATGATTATGTGAAAT+TGG + chr1_3:21489989-21490008 None:intergenic 15.0%
!! AACAATAAAATGTTTATTTG+GGG + chr1_3:21490426-21490445 None:intergenic 15.0%
!! CAACAATAAAATGTTTATTT+GGG + chr1_3:21490427-21490446 None:intergenic 15.0%
!! ACAACAATAAAATGTTTATT+TGG + chr1_3:21490428-21490447 None:intergenic 15.0%
!! ATTTCTTATAAAATCATAAG+GGG + chr1_3:21490587-21490606 None:intergenic 15.0%
!! TACATATTAAAATGTCAAAT+AGG + chr1_3:21489864-21489883 None:intergenic 15.0%
!!! TTTTAATGATTATGTGAAAT+TGG + chr1_3:21489989-21490008 None:intergenic 15.0%
!! AACAATAAAATGTTTATTTG+GGG + chr1_3:21490426-21490445 None:intergenic 15.0%
!! CAACAATAAAATGTTTATTT+GGG + chr1_3:21490427-21490446 None:intergenic 15.0%
!! ACAACAATAAAATGTTTATT+TGG + chr1_3:21490428-21490447 None:intergenic 15.0%
!! ATTTCTTATAAAATCATAAG+GGG + chr1_3:21490587-21490606 None:intergenic 15.0%
!! ACATTATTAGGAGAATATAA+TGG - chr1_3:21490009-21490028 Msa0109490:CDS 20.0%
!! TAGAAAATTGTAGAATCATA+GGG - chr1_3:21490116-21490135 Msa0109490:CDS 20.0%
!!! TCCTTATTTATAAGACTTAA+TGG - chr1_3:21490259-21490278 Msa0109490:CDS 20.0%
!!! TCCATTAAGTCTTATAAATA+AGG + chr1_3:21490263-21490282 None:intergenic 20.0%
!! ACAATAAAATGTTTATTTGG+GGG + chr1_3:21490425-21490444 None:intergenic 20.0%
!! AAATTGAAATTTGAAGATGT+TGG + chr1_3:21490518-21490537 None:intergenic 20.0%
!! ACAAGAATTGAAATGAAATA+TGG + chr1_3:21490672-21490691 None:intergenic 20.0%
!!! TAAATTGTGAGTTTTTTAAG+TGG + chr1_3:21490706-21490725 None:intergenic 20.0%
!!! TCAAAATTTGGTTTTATGTT+TGG + chr1_3:21491207-21491226 None:intergenic 20.0%
!!! CTAAAATTTTCAGTCATAAT+AGG - chr1_3:21491309-21491328 Msa0109490:intron 20.0%
!! AGTTATTGTTTATGTAAGAA+TGG - chr1_3:21491612-21491631 Msa0109490:CDS 20.0%
!! GTATAAAAATTAGAGAAGAT+AGG - chr1_3:21491780-21491799 Msa0109490:CDS 20.0%
!! ACATTATTAGGAGAATATAA+TGG - chr1_3:21490009-21490028 Msa0109490:CDS 20.0%
!! TAGAAAATTGTAGAATCATA+GGG - chr1_3:21490116-21490135 Msa0109490:CDS 20.0%
!!! TCCTTATTTATAAGACTTAA+TGG - chr1_3:21490259-21490278 Msa0109490:CDS 20.0%
!!! TCCATTAAGTCTTATAAATA+AGG + chr1_3:21490263-21490282 None:intergenic 20.0%
!! ACAATAAAATGTTTATTTGG+GGG + chr1_3:21490425-21490444 None:intergenic 20.0%
!! AAATTGAAATTTGAAGATGT+TGG + chr1_3:21490518-21490537 None:intergenic 20.0%
!! ACAAGAATTGAAATGAAATA+TGG + chr1_3:21490672-21490691 None:intergenic 20.0%
!!! TAAATTGTGAGTTTTTTAAG+TGG + chr1_3:21490706-21490725 None:intergenic 20.0%
!!! TCAAAATTTGGTTTTATGTT+TGG + chr1_3:21491207-21491226 None:intergenic 20.0%
!!! CTAAAATTTTCAGTCATAAT+AGG - chr1_3:21491309-21491328 Msa0109490:intron 20.0%
!! AGTTATTGTTTATGTAAGAA+TGG - chr1_3:21491612-21491631 Msa0109490:CDS 20.0%
!! GTATAAAAATTAGAGAAGAT+AGG - chr1_3:21491780-21491799 Msa0109490:CDS 20.0%
!!! GTTAGTAATGTTTTTGAAAC+TGG - chr1_3:21489538-21489557 Msa0109490:three_prime_UTR 25.0%
! GTAGAAAATTGTAGAATCAT+AGG - chr1_3:21490115-21490134 Msa0109490:CDS 25.0%
!!! TAGGATTAGTTAATAGTTAG+TGG + chr1_3:21490315-21490334 None:intergenic 25.0%
!!! TAGGATTTTGTTGGTTAATT+AGG + chr1_3:21490334-21490353 None:intergenic 25.0%
!! TAAGATTCTTAGGATTTTGT+TGG + chr1_3:21490343-21490362 None:intergenic 25.0%
! CAATAAAATGTTTATTTGGG+GGG + chr1_3:21490424-21490443 None:intergenic 25.0%
! TGTTGTTAGAAAATTTGAGT+TGG - chr1_3:21490442-21490461 Msa0109490:intron 25.0%
! AATTCGTTGTAGTGAAAAAA+TGG + chr1_3:21490560-21490579 None:intergenic 25.0%
! TTATAAGAAATTTCAGTGCT+AGG - chr1_3:21490596-21490615 Msa0109490:intron 25.0%
! CACTTCAAATACACAAAATA+AGG - chr1_3:21490770-21490789 Msa0109490:intron 25.0%
! ATCTTAGAAAACATGTCTAA+TGG - chr1_3:21490801-21490820 Msa0109490:intron 25.0%
!!! TTTCTTTTTTGCTTTTTGTC+AGG + chr1_3:21490965-21490984 None:intergenic 25.0%
! TAAATCTCTTCAGTTATATC+AGG + chr1_3:21491129-21491148 None:intergenic 25.0%
! ATAACAAATTGGCTATCTAA+AGG - chr1_3:21491162-21491181 Msa0109490:intron 25.0%
!!! AAATTTGGTTTTATGTTTGG+TGG + chr1_3:21491204-21491223 None:intergenic 25.0%
! ATATCGTAATCAAATGAATG+AGG + chr1_3:21491399-21491418 None:intergenic 25.0%
! TCATTCATTTGATTACGATA+TGG - chr1_3:21491398-21491417 Msa0109490:intron 25.0%
! TAATCAAATTTCATCTCAAG+AGG + chr1_3:21491756-21491775 None:intergenic 25.0%
!!! TTCATGTTTTAAGATATGCA+TGG - chr1_3:21491881-21491900 Msa0109490:five_prime_UTR 25.0%
!! ACTTTTTGCTTAAGAATTTG+TGG + chr1_3:21489480-21489499 None:intergenic 25.0%
!!! GTTAGTAATGTTTTTGAAAC+TGG - chr1_3:21489538-21489557 Msa0109490:three_prime_UTR 25.0%
! GTAGAAAATTGTAGAATCAT+AGG - chr1_3:21490115-21490134 Msa0109490:CDS 25.0%
!!! TAGGATTAGTTAATAGTTAG+TGG + chr1_3:21490315-21490334 None:intergenic 25.0%
!!! TAGGATTTTGTTGGTTAATT+AGG + chr1_3:21490334-21490353 None:intergenic 25.0%
!! TAAGATTCTTAGGATTTTGT+TGG + chr1_3:21490343-21490362 None:intergenic 25.0%
! CAATAAAATGTTTATTTGGG+GGG + chr1_3:21490424-21490443 None:intergenic 25.0%
! TGTTGTTAGAAAATTTGAGT+TGG - chr1_3:21490442-21490461 Msa0109490:intron 25.0%
! AATTCGTTGTAGTGAAAAAA+TGG + chr1_3:21490560-21490579 None:intergenic 25.0%
! TTATAAGAAATTTCAGTGCT+AGG - chr1_3:21490596-21490615 Msa0109490:intron 25.0%
! CACTTCAAATACACAAAATA+AGG - chr1_3:21490770-21490789 Msa0109490:intron 25.0%
! ATCTTAGAAAACATGTCTAA+TGG - chr1_3:21490801-21490820 Msa0109490:intron 25.0%
!!! TTTCTTTTTTGCTTTTTGTC+AGG + chr1_3:21490965-21490984 None:intergenic 25.0%
! TAAATCTCTTCAGTTATATC+AGG + chr1_3:21491129-21491148 None:intergenic 25.0%
! ATAACAAATTGGCTATCTAA+AGG - chr1_3:21491162-21491181 Msa0109490:intron 25.0%
!!! AAATTTGGTTTTATGTTTGG+TGG + chr1_3:21491204-21491223 None:intergenic 25.0%
! ATATCGTAATCAAATGAATG+AGG + chr1_3:21491399-21491418 None:intergenic 25.0%
! TCATTCATTTGATTACGATA+TGG - chr1_3:21491398-21491417 Msa0109490:intron 25.0%
! TAATCAAATTTCATCTCAAG+AGG + chr1_3:21491756-21491775 None:intergenic 25.0%
!!! TTCATGTTTTAAGATATGCA+TGG - chr1_3:21491881-21491900 Msa0109490:five_prime_UTR 25.0%
TTAGCACACATGAACTATAT+AGG + chr1_3:21489655-21489674 None:intergenic 30.0%
CATGTAGAAAAAGTAGAAGT+GGG + chr1_3:21489754-21489773 None:intergenic 30.0%
TAGTTAATAGTTAGTGGAGT+TGG + chr1_3:21490309-21490328 None:intergenic 30.0%
ATCCTAAGAATCTTAACACA+TGG - chr1_3:21490348-21490367 Msa0109490:intron 30.0%
AAAAAATGGTGCAATGTCTA+TGG + chr1_3:21490546-21490565 None:intergenic 30.0%
TATAGGTCAATCAAACACAT+GGG - chr1_3:21490629-21490648 Msa0109490:intron 30.0%
TAGAACTGTTGGGAAAAAAT+TGG + chr1_3:21491056-21491075 None:intergenic 30.0%
! TTTTCCCAACAGTTCTATTT+TGG - chr1_3:21491059-21491078 Msa0109490:intron 30.0%
TTCACCAAAATAGAACTGTT+GGG + chr1_3:21491066-21491085 None:intergenic 30.0%
TTTCACCAAAATAGAACTGT+TGG + chr1_3:21491067-21491086 None:intergenic 30.0%
TTTCCTCTCTTAGTTGTATA+CGG - chr1_3:21491095-21491114 Msa0109490:intron 30.0%
! AGTGCTAACTTGTCAAAATT+TGG + chr1_3:21491219-21491238 None:intergenic 30.0%
!! AATTTTGACAAGTTAGCACT+TGG - chr1_3:21491219-21491238 Msa0109490:intron 30.0%
ATCAAATGAATGAGGAACAT+AGG + chr1_3:21491391-21491410 None:intergenic 30.0%
! TATTTTGTGGCTAAGGATTA+TGG - chr1_3:21491540-21491559 Msa0109490:CDS 30.0%
TTATGGTCATGTTGATATGT+TGG - chr1_3:21491557-21491576 Msa0109490:CDS 30.0%
ATGTTGGATGATGATACTAA+AGG - chr1_3:21491573-21491592 Msa0109490:CDS 30.0%
ATGATACTAAAGGAGTTAGA+GGG - chr1_3:21491583-21491602 Msa0109490:CDS 30.0%
TATGTAAGAATGGTGAATCA+AGG - chr1_3:21491622-21491641 Msa0109490:CDS 30.0%
AAACCTATGAGGATATTTGT+TGG - chr1_3:21491645-21491664 Msa0109490:CDS 30.0%
TTCTTGAAAGCTTATTTGCA+TGG - chr1_3:21491684-21491703 Msa0109490:intron 30.0%
! TTATTTGCATGGTGATAATG+TGG - chr1_3:21491695-21491714 Msa0109490:intron 30.0%
CACATGTAATTCAACTAATG+AGG - chr1_3:21491821-21491840 Msa0109490:CDS 30.0%
TTAGCACACATGAACTATAT+AGG + chr1_3:21489655-21489674 None:intergenic 30.0%
CATGTAGAAAAAGTAGAAGT+GGG + chr1_3:21489754-21489773 None:intergenic 30.0%
TAGTTAATAGTTAGTGGAGT+TGG + chr1_3:21490309-21490328 None:intergenic 30.0%
ATCCTAAGAATCTTAACACA+TGG - chr1_3:21490348-21490367 Msa0109490:intron 30.0%
AAAAAATGGTGCAATGTCTA+TGG + chr1_3:21490546-21490565 None:intergenic 30.0%
TATAGGTCAATCAAACACAT+GGG - chr1_3:21490629-21490648 Msa0109490:intron 30.0%
TAGAACTGTTGGGAAAAAAT+TGG + chr1_3:21491056-21491075 None:intergenic 30.0%
! TTTTCCCAACAGTTCTATTT+TGG - chr1_3:21491059-21491078 Msa0109490:intron 30.0%
TTCACCAAAATAGAACTGTT+GGG + chr1_3:21491066-21491085 None:intergenic 30.0%
TTTCACCAAAATAGAACTGT+TGG + chr1_3:21491067-21491086 None:intergenic 30.0%
TTTCCTCTCTTAGTTGTATA+CGG - chr1_3:21491095-21491114 Msa0109490:intron 30.0%
! AGTGCTAACTTGTCAAAATT+TGG + chr1_3:21491219-21491238 None:intergenic 30.0%
!! AATTTTGACAAGTTAGCACT+TGG - chr1_3:21491219-21491238 Msa0109490:intron 30.0%
ATCAAATGAATGAGGAACAT+AGG + chr1_3:21491391-21491410 None:intergenic 30.0%
! TATTTTGTGGCTAAGGATTA+TGG - chr1_3:21491540-21491559 Msa0109490:CDS 30.0%
TTATGGTCATGTTGATATGT+TGG - chr1_3:21491557-21491576 Msa0109490:CDS 30.0%
ATGTTGGATGATGATACTAA+AGG - chr1_3:21491573-21491592 Msa0109490:CDS 30.0%
ATGATACTAAAGGAGTTAGA+GGG - chr1_3:21491583-21491602 Msa0109490:CDS 30.0%
TATGTAAGAATGGTGAATCA+AGG - chr1_3:21491622-21491641 Msa0109490:CDS 30.0%
AAACCTATGAGGATATTTGT+TGG - chr1_3:21491645-21491664 Msa0109490:CDS 30.0%
TTCTTGAAAGCTTATTTGCA+TGG - chr1_3:21491684-21491703 Msa0109490:intron 30.0%
! TTATTTGCATGGTGATAATG+TGG - chr1_3:21491695-21491714 Msa0109490:intron 30.0%
CACATGTAATTCAACTAATG+AGG - chr1_3:21491821-21491840 Msa0109490:CDS 30.0%
CACATAACTGATGATAGTTG+AGG + chr1_3:21489511-21489530 None:intergenic 35.0%
ACTATACCACTAAGCTACTA+AGG - chr1_3:21489563-21489582 Msa0109490:three_prime_UTR 35.0%
CTATACCACTAAGCTACTAA+GGG - chr1_3:21489564-21489583 Msa0109490:three_prime_UTR 35.0%
TGTTCACGTACACAACAATA+TGG - chr1_3:21489595-21489614 Msa0109490:exon 35.0%
! GTTGCAATCAAGAGAGATTT+TGG + chr1_3:21489710-21489729 None:intergenic 35.0%
TTGATTGCAACTCCTATTGA+AGG - chr1_3:21489719-21489738 Msa0109490:CDS 35.0%
CCATGTAGAAAAAGTAGAAG+TGG + chr1_3:21489755-21489774 None:intergenic 35.0%
!!! CCACTTCTACTTTTTCTACA+TGG - chr1_3:21489752-21489771 Msa0109490:CDS 35.0%
! ACAATTTTCTACACTGTGCA+AGG + chr1_3:21490107-21490126 None:intergenic 35.0%
AGCCATGTGTTAAGATTCTT+AGG + chr1_3:21490353-21490372 None:intergenic 35.0%
AAATGTTTATTTGGGGGGTT+TGG + chr1_3:21490419-21490438 None:intergenic 35.0%
GTATAGGTCAATCAAACACA+TGG - chr1_3:21490628-21490647 Msa0109490:intron 35.0%
TATCACAGACATTATGTGCA+GGG - chr1_3:21490871-21490890 Msa0109490:intron 35.0%
AGATTCACACACATAATGTG+TGG + chr1_3:21490929-21490948 None:intergenic 35.0%
CTGTAGCTGCAATAACAAAT+TGG - chr1_3:21491151-21491170 Msa0109490:intron 35.0%
TGATTACGATATGGCAACAT+TGG - chr1_3:21491407-21491426 Msa0109490:intron 35.0%
! GATATGGCAACATTGGTTAT+TGG - chr1_3:21491414-21491433 Msa0109490:intron 35.0%
!! TTGGTTATTGGTTCTGGTTT+AGG - chr1_3:21491426-21491445 Msa0109490:intron 35.0%
! GAAACCTTCTTGGTATTTTG+TGG - chr1_3:21491527-21491546 Msa0109490:intron 35.0%
TTAGCCACAAAATACCAAGA+AGG + chr1_3:21491534-21491553 None:intergenic 35.0%
! TTCTTGGTATTTTGTGGCTA+AGG - chr1_3:21491533-21491552 Msa0109490:intron 35.0%
GATGATACTAAAGGAGTTAG+AGG - chr1_3:21491582-21491601 Msa0109490:CDS 35.0%
! GATATTTGTTGGAGGAGTTA+TGG - chr1_3:21491656-21491675 Msa0109490:CDS 35.0%
CACATAACTGATGATAGTTG+AGG + chr1_3:21489511-21489530 None:intergenic 35.0%
ACTATACCACTAAGCTACTA+AGG - chr1_3:21489563-21489582 Msa0109490:three_prime_UTR 35.0%
CTATACCACTAAGCTACTAA+GGG - chr1_3:21489564-21489583 Msa0109490:three_prime_UTR 35.0%
TGTTCACGTACACAACAATA+TGG - chr1_3:21489595-21489614 Msa0109490:exon 35.0%
! GTTGCAATCAAGAGAGATTT+TGG + chr1_3:21489710-21489729 None:intergenic 35.0%
TTGATTGCAACTCCTATTGA+AGG - chr1_3:21489719-21489738 Msa0109490:CDS 35.0%
CCATGTAGAAAAAGTAGAAG+TGG + chr1_3:21489755-21489774 None:intergenic 35.0%
!!! CCACTTCTACTTTTTCTACA+TGG - chr1_3:21489752-21489771 Msa0109490:CDS 35.0%
! ACAATTTTCTACACTGTGCA+AGG + chr1_3:21490107-21490126 None:intergenic 35.0%
AGCCATGTGTTAAGATTCTT+AGG + chr1_3:21490353-21490372 None:intergenic 35.0%
AAATGTTTATTTGGGGGGTT+TGG + chr1_3:21490419-21490438 None:intergenic 35.0%
GTATAGGTCAATCAAACACA+TGG - chr1_3:21490628-21490647 Msa0109490:intron 35.0%
TATCACAGACATTATGTGCA+GGG - chr1_3:21490871-21490890 Msa0109490:intron 35.0%
AGATTCACACACATAATGTG+TGG + chr1_3:21490929-21490948 None:intergenic 35.0%
CTGTAGCTGCAATAACAAAT+TGG - chr1_3:21491151-21491170 Msa0109490:intron 35.0%
TGATTACGATATGGCAACAT+TGG - chr1_3:21491407-21491426 Msa0109490:intron 35.0%
! GATATGGCAACATTGGTTAT+TGG - chr1_3:21491414-21491433 Msa0109490:intron 35.0%
!! TTGGTTATTGGTTCTGGTTT+AGG - chr1_3:21491426-21491445 Msa0109490:intron 35.0%
! GAAACCTTCTTGGTATTTTG+TGG - chr1_3:21491527-21491546 Msa0109490:intron 35.0%
TTAGCCACAAAATACCAAGA+AGG + chr1_3:21491534-21491553 None:intergenic 35.0%
! TTCTTGGTATTTTGTGGCTA+AGG - chr1_3:21491533-21491552 Msa0109490:intron 35.0%
GATGATACTAAAGGAGTTAG+AGG - chr1_3:21491582-21491601 Msa0109490:CDS 35.0%
! GATATTTGTTGGAGGAGTTA+TGG - chr1_3:21491656-21491675 Msa0109490:CDS 35.0%
ATCAACCCTTAGTAGCTTAG+TGG + chr1_3:21489572-21489591 None:intergenic 40.0%
!! ATCAAGAGAGATTTTGGTGG+TGG + chr1_3:21489704-21489723 None:intergenic 40.0%
! GCAATCAAGAGAGATTTTGG+TGG + chr1_3:21489707-21489726 None:intergenic 40.0%
ATTGCAACTCCTATTGAAGG+TGG - chr1_3:21489722-21489741 Msa0109490:CDS 40.0%
! ATTGAGCATGTTGCTTCTCA+TGG - chr1_3:21489809-21489828 Msa0109490:CDS 40.0%
GTCAAATAGGAACTAACCTG+AGG + chr1_3:21489851-21489870 None:intergenic 40.0%
!! TGTTTGCAAGAAGCACTTCT+AGG - chr1_3:21489899-21489918 Msa0109490:CDS 40.0%
!! GTTTGCAAGAAGCACTTCTA+GGG - chr1_3:21489900-21489919 Msa0109490:CDS 40.0%
! ATTTTCTACACTGTGCAAGG+AGG + chr1_3:21490104-21490123 None:intergenic 40.0%
! TGCTAGGACTATGAGAGTAT+AGG - chr1_3:21490612-21490631 Msa0109490:intron 40.0%
TACCAACTGGCTACAATTAC+GGG + chr1_3:21490849-21490868 None:intergenic 40.0%
CTACCAACTGGCTACAATTA+CGG + chr1_3:21490850-21490869 None:intergenic 40.0%
CTATCACAGACATTATGTGC+AGG - chr1_3:21490870-21490889 Msa0109490:intron 40.0%
ATCACAGACATTATGTGCAG+GGG - chr1_3:21490872-21490891 Msa0109490:intron 40.0%
TGTGTGTGAATCTAGCCAAT+AGG - chr1_3:21490936-21490955 Msa0109490:intron 40.0%
! CTTTTTGTCAGGTAGCCTAT+TGG + chr1_3:21490954-21490973 None:intergenic 40.0%
TTTGACAAGTTAGCACTTGG+TGG - chr1_3:21491222-21491241 Msa0109490:intron 40.0%
! ATAGGAGTTGATCCAGTTGA+TGG - chr1_3:21491327-21491346 Msa0109490:intron 40.0%
!! AGTTGATCCAGTTGATGGAA+TGG - chr1_3:21491332-21491351 Msa0109490:intron 40.0%
CCTTTATCCATTCCATCAAC+TGG + chr1_3:21491342-21491361 None:intergenic 40.0%
!! CCAGTTGATGGAATGGATAA+AGG - chr1_3:21491339-21491358 Msa0109490:intron 40.0%
TGAGGAACATAGGTGAGAAT+TGG + chr1_3:21491381-21491400 None:intergenic 40.0%
!! GCAACATTGGTTATTGGTTC+TGG - chr1_3:21491420-21491439 Msa0109490:intron 40.0%
GTGAATCAAGGAAACCTATG+AGG - chr1_3:21491634-21491653 Msa0109490:CDS 40.0%
CCTCCAACAAATATCCTCAT+AGG + chr1_3:21491651-21491670 None:intergenic 40.0%
! CCTATGAGGATATTTGTTGG+AGG - chr1_3:21491648-21491667 Msa0109490:CDS 40.0%
ATCAACCCTTAGTAGCTTAG+TGG + chr1_3:21489572-21489591 None:intergenic 40.0%
!! ATCAAGAGAGATTTTGGTGG+TGG + chr1_3:21489704-21489723 None:intergenic 40.0%
! GCAATCAAGAGAGATTTTGG+TGG + chr1_3:21489707-21489726 None:intergenic 40.0%
ATTGCAACTCCTATTGAAGG+TGG - chr1_3:21489722-21489741 Msa0109490:CDS 40.0%
! ATTGAGCATGTTGCTTCTCA+TGG - chr1_3:21489809-21489828 Msa0109490:CDS 40.0%
GTCAAATAGGAACTAACCTG+AGG + chr1_3:21489851-21489870 None:intergenic 40.0%
!! TGTTTGCAAGAAGCACTTCT+AGG - chr1_3:21489899-21489918 Msa0109490:CDS 40.0%
!! GTTTGCAAGAAGCACTTCTA+GGG - chr1_3:21489900-21489919 Msa0109490:CDS 40.0%
! ATTTTCTACACTGTGCAAGG+AGG + chr1_3:21490104-21490123 None:intergenic 40.0%
! TGCTAGGACTATGAGAGTAT+AGG - chr1_3:21490612-21490631 Msa0109490:intron 40.0%
TACCAACTGGCTACAATTAC+GGG + chr1_3:21490849-21490868 None:intergenic 40.0%
CTACCAACTGGCTACAATTA+CGG + chr1_3:21490850-21490869 None:intergenic 40.0%
CTATCACAGACATTATGTGC+AGG - chr1_3:21490870-21490889 Msa0109490:intron 40.0%
ATCACAGACATTATGTGCAG+GGG - chr1_3:21490872-21490891 Msa0109490:intron 40.0%
TGTGTGTGAATCTAGCCAAT+AGG - chr1_3:21490936-21490955 Msa0109490:intron 40.0%
! CTTTTTGTCAGGTAGCCTAT+TGG + chr1_3:21490954-21490973 None:intergenic 40.0%
TTTGACAAGTTAGCACTTGG+TGG - chr1_3:21491222-21491241 Msa0109490:intron 40.0%
! ATAGGAGTTGATCCAGTTGA+TGG - chr1_3:21491327-21491346 Msa0109490:intron 40.0%
!! AGTTGATCCAGTTGATGGAA+TGG - chr1_3:21491332-21491351 Msa0109490:intron 40.0%
CCTTTATCCATTCCATCAAC+TGG + chr1_3:21491342-21491361 None:intergenic 40.0%
!! CCAGTTGATGGAATGGATAA+AGG - chr1_3:21491339-21491358 Msa0109490:intron 40.0%
TGAGGAACATAGGTGAGAAT+TGG + chr1_3:21491381-21491400 None:intergenic 40.0%
!! GCAACATTGGTTATTGGTTC+TGG - chr1_3:21491420-21491439 Msa0109490:intron 40.0%
GTGAATCAAGGAAACCTATG+AGG - chr1_3:21491634-21491653 Msa0109490:CDS 40.0%
CCTCCAACAAATATCCTCAT+AGG + chr1_3:21491651-21491670 None:intergenic 40.0%
! CCTATGAGGATATTTGTTGG+AGG - chr1_3:21491648-21491667 Msa0109490:CDS 40.0%
GGGAAATCTCCACCTTCAAT+AGG + chr1_3:21489734-21489753 None:intergenic 45.0%
CTTCATTGTCATTGCTCCTC+AGG - chr1_3:21489832-21489851 Msa0109490:CDS 45.0%
AACCCTATACCTCTAACCTC+TGG - chr1_3:21490375-21490394 Msa0109490:intron 45.0%
! AGCCAGAGGTTAGAGGTATA+GGG + chr1_3:21490380-21490399 None:intergenic 45.0%
TGTCTGTGATAGCTACCAAC+TGG + chr1_3:21490862-21490881 None:intergenic 45.0%
ACACATAATGTGTGGAGAGG+TGG + chr1_3:21490921-21490940 None:intergenic 45.0%
CACACACATAATGTGTGGAG+AGG + chr1_3:21490924-21490943 None:intergenic 45.0%
CCACCGTATACAACTAAGAG+AGG + chr1_3:21491101-21491120 None:intergenic 45.0%
CCTCTCTTAGTTGTATACGG+TGG - chr1_3:21491098-21491117 Msa0109490:intron 45.0%
TCTTAGTTGTATACGGTGGC+TGG - chr1_3:21491102-21491121 Msa0109490:intron 45.0%
GGAACATAGGTGAGAATTGG+TGG + chr1_3:21491378-21491397 None:intergenic 45.0%
GTGCACAAGGAGGAAACAAA+GGG + chr1_3:21491467-21491486 None:intergenic 45.0%
TTTCCTCCTTGTGCACCTAA+GGG - chr1_3:21491471-21491490 Msa0109490:intron 45.0%
!! ACCTAAGGGTGTCAATCATG+AGG - chr1_3:21491485-21491504 Msa0109490:intron 45.0%
TCCTCATGATTGACACCCTT+AGG + chr1_3:21491489-21491508 None:intergenic 45.0%
GCGAATGTGAGAAACCTTCT+TGG - chr1_3:21491517-21491536 Msa0109490:intron 45.0%
GGGAAATCTCCACCTTCAAT+AGG + chr1_3:21489734-21489753 None:intergenic 45.0%
CTTCATTGTCATTGCTCCTC+AGG - chr1_3:21489832-21489851 Msa0109490:CDS 45.0%
AACCCTATACCTCTAACCTC+TGG - chr1_3:21490375-21490394 Msa0109490:intron 45.0%
! AGCCAGAGGTTAGAGGTATA+GGG + chr1_3:21490380-21490399 None:intergenic 45.0%
TGTCTGTGATAGCTACCAAC+TGG + chr1_3:21490862-21490881 None:intergenic 45.0%
ACACATAATGTGTGGAGAGG+TGG + chr1_3:21490921-21490940 None:intergenic 45.0%
CACACACATAATGTGTGGAG+AGG + chr1_3:21490924-21490943 None:intergenic 45.0%
CCACCGTATACAACTAAGAG+AGG + chr1_3:21491101-21491120 None:intergenic 45.0%
CCTCTCTTAGTTGTATACGG+TGG - chr1_3:21491098-21491117 Msa0109490:intron 45.0%
TCTTAGTTGTATACGGTGGC+TGG - chr1_3:21491102-21491121 Msa0109490:intron 45.0%
GGAACATAGGTGAGAATTGG+TGG + chr1_3:21491378-21491397 None:intergenic 45.0%
GTGCACAAGGAGGAAACAAA+GGG + chr1_3:21491467-21491486 None:intergenic 45.0%
TTTCCTCCTTGTGCACCTAA+GGG - chr1_3:21491471-21491490 Msa0109490:intron 45.0%
!! ACCTAAGGGTGTCAATCATG+AGG - chr1_3:21491485-21491504 Msa0109490:intron 45.0%
TCCTCATGATTGACACCCTT+AGG + chr1_3:21491489-21491508 None:intergenic 45.0%
GCGAATGTGAGAAACCTTCT+TGG - chr1_3:21491517-21491536 Msa0109490:intron 45.0%
! GAGCCAGAGGTTAGAGGTAT+AGG + chr1_3:21490381-21490400 None:intergenic 50.0%
TGGTTTGAGCCAGAGGTTAG+AGG + chr1_3:21490387-21490406 None:intergenic 50.0%
GTCCCGTAATTGTAGCCAGT+TGG - chr1_3:21490844-21490863 Msa0109490:intron 50.0%
CAGACATTATGTGCAGGGGT+CGG - chr1_3:21490876-21490895 Msa0109490:intron 50.0%
AGACATTATGTGCAGGGGTC+GGG - chr1_3:21490877-21490896 Msa0109490:intron 50.0%
GGTGCACAAGGAGGAAACAA+AGG + chr1_3:21491468-21491487 None:intergenic 50.0%
GTTTCCTCCTTGTGCACCTA+AGG - chr1_3:21491470-21491489 Msa0109490:intron 50.0%
TTGACACCCTTAGGTGCACA+AGG + chr1_3:21491480-21491499 None:intergenic 50.0%
! GAGCCAGAGGTTAGAGGTAT+AGG + chr1_3:21490381-21490400 None:intergenic 50.0%
TGGTTTGAGCCAGAGGTTAG+AGG + chr1_3:21490387-21490406 None:intergenic 50.0%
GTCCCGTAATTGTAGCCAGT+TGG - chr1_3:21490844-21490863 Msa0109490:intron 50.0%
CAGACATTATGTGCAGGGGT+CGG - chr1_3:21490876-21490895 Msa0109490:intron 50.0%
AGACATTATGTGCAGGGGTC+GGG - chr1_3:21490877-21490896 Msa0109490:intron 50.0%
GGTGCACAAGGAGGAAACAA+AGG + chr1_3:21491468-21491487 None:intergenic 50.0%
GTTTCCTCCTTGTGCACCTA+AGG - chr1_3:21491470-21491489 Msa0109490:intron 50.0%
TTGACACCCTTAGGTGCACA+AGG + chr1_3:21491480-21491499 None:intergenic 50.0%
!! GCTCAACTGGTTTGAGCCAG+AGG + chr1_3:21490394-21490413 None:intergenic 55.0%
GACATTATGTGCAGGGGTCG+GGG - chr1_3:21490878-21490897 Msa0109490:intron 55.0%
GTGGAGAGGTGGAGAATCTG+AGG + chr1_3:21490910-21490929 None:intergenic 55.0%
! GCACTTGGTGGTCATAGTCG+CGG - chr1_3:21491234-21491253 Msa0109490:intron 55.0%
ACACCCTTAGGTGCACAAGG+AGG + chr1_3:21491477-21491496 None:intergenic 55.0%
!! GCTCAACTGGTTTGAGCCAG+AGG + chr1_3:21490394-21490413 None:intergenic 55.0%
GACATTATGTGCAGGGGTCG+GGG - chr1_3:21490878-21490897 Msa0109490:intron 55.0%
GTGGAGAGGTGGAGAATCTG+AGG + chr1_3:21490910-21490929 None:intergenic 55.0%
! GCACTTGGTGGTCATAGTCG+CGG - chr1_3:21491234-21491253 Msa0109490:intron 55.0%
ACACCCTTAGGTGCACAAGG+AGG + chr1_3:21491477-21491496 None:intergenic 55.0%
! GGGGGGTTTGGTAGCTCAAC+TGG + chr1_3:21490407-21490426 None:intergenic 60.0%
! CTTGGTGGTCATAGTCGCGG+CGG - chr1_3:21491237-21491256 Msa0109490:intron 60.0%
! TTGGTGGTCATAGTCGCGGC+GGG - chr1_3:21491238-21491257 Msa0109490:intron 60.0%
! GGGGGGTTTGGTAGCTCAAC+TGG + chr1_3:21490407-21490426 None:intergenic 60.0%
! CTTGGTGGTCATAGTCGCGG+CGG - chr1_3:21491237-21491256 Msa0109490:intron 60.0%
! TTGGTGGTCATAGTCGCGGC+GGG - chr1_3:21491238-21491257 Msa0109490:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 21489480 21491908 21489480 ID=Msa0109490;Name=Msa0109490
chr1_3 mRNA 21489480 21491908 21489480 ID=Msa0109490-mRNA-1;Parent=Msa0109490;Name=Msa0109490-mRNA-1;_AED=0.04;_eAED=0.04;_QI=46|1|1|1|1|1|3|123|307
chr1_3 exon 21489480 21490280 21489480 ID=Msa0109490-mRNA-1:exon:7743;Parent=Msa0109490-mRNA-1
chr1_3 exon 21491535 21491689 21491535 ID=Msa0109490-mRNA-1:exon:7742;Parent=Msa0109490-mRNA-1
chr1_3 exon 21491772 21491908 21491772 ID=Msa0109490-mRNA-1:exon:7741;Parent=Msa0109490-mRNA-1
chr1_3 five_prime_UTR 21491863 21491908 21491863 ID=Msa0109490-mRNA-1:five_prime_utr;Parent=Msa0109490-mRNA-1
chr1_3 CDS 21491772 21491862 21491772 ID=Msa0109490-mRNA-1:cds;Parent=Msa0109490-mRNA-1
chr1_3 CDS 21491535 21491689 21491535 ID=Msa0109490-mRNA-1:cds;Parent=Msa0109490-mRNA-1
chr1_3 CDS 21489603 21490280 21489603 ID=Msa0109490-mRNA-1:cds;Parent=Msa0109490-mRNA-1
chr1_3 three_prime_UTR 21489480 21489602 21489480 ID=Msa0109490-mRNA-1:three_prime_utr;Parent=Msa0109490-mRNA-1
Gene Sequence

>Msa0109490

ATGTGTTCTTCTGTTAGTAATGTTTTTGAAACTGGTAACTATACCACTAAGCTACTAAGGGTTGATTCTTGTTCACGTACACAACAATATGTTCCACCACCAAAATCTCTCTTGATTGCAACTCCTATTGAAGGTGGAGATTTCCCACTTCTACTTTTTCTACATGGCTATCTTCTTTTGAACTCATTTTATTCTCAGCTTATTGAGCATGTTGCTTCTCATGGCTTCATTGTCATTGCTCCTCAGTTGTATACGGTGGCTGGACCTGATATAACTGAAGAGATTTACTCTGTAGCTGCAATAACAAATTGGCTATCTAAAGGACTTAGCAAGATTCTTCCACCAAACATAAAACCAAATTTTGACAAGTTAGCACTTGGTGGTCATAGTCGCGGCGGGAAAACATCATTTGCTATTGCTCTAAGAAAATTAAACATCACAACTGATCTAAAATTTTCAGTCATAATAGGAGTTGATCCAGTTGATGGAATGGATAAAGGAAAGCAAACATCACCACCAATTCTCACCTATGTTCCTCATTCATTTGATTACGATATGGCAACATTGGTTATTGGTTCTGGTTTAGGTGATGTGAAAAAGAACCCTTTGTTTCCTCCTTGTGCACCTAAGGGTGTCAATCATGAGGATTTTTTTAGCGAATGTGAGAAACCTTCTTGGTATTTTGTGGCTAAGGATTATGGTCATGTTGATATGTTGGATGATGATACTAAAGGAGTTAGAGGGAAAGTTAGTTATTGTTTATGTAAGAATGGTGAATCAAGGAAACCTATGAGGATATTTGTTGGAGGAGTTATGGTTGCATTCTTGAAAGCTTATTTGCATGGTGATAATGTGGACTTATTAGCTATAAGAGACAAGAGTGTGAGTGTTCCTCTTGAGATGAAATTTGATTATTTTGTATAA

Protein sequence

>Msa0109490

MCSSVSNVFETGNYTTKLLRVDSCSRTQQYVPPPKSLLIATPIEGGDFPLLLFLHGYLLLNSFYSQLIEHVASHGFIVIAPQLYTVAGPDITEEIYSVAAITNWLSKGLSKILPPNIKPNFDKLALGGHSRGGKTSFAIALRKLNITTDLKFSVIIGVDPVDGMDKGKQTSPPILTYVPHSFDYDMATLVIGSGLGDVKKNPLFPPCAPKGVNHEDFFSECEKPSWYFVAKDYGHVDMLDDDTKGVRGKVSYCLCKNGESRKPMRIFVGGVMVAFLKAYLHGDNVDLLAIRDKSVSVPLEMKFDYFV*