AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0145180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145180 MtrunA17_Chr1g0153371 96.010 401 16 0 1 401 82 482 0.0 802
Msa0145180 MtrunA17_Chr4g0044851 67.010 388 125 2 1 387 84 469 0.0 554
Msa0145180 MtrunA17_Chr4g0044841 66.154 390 128 3 1 388 85 472 0.0 544
Msa0145180 MtrunA17_Chr8g0369791 56.041 389 159 5 1 386 84 463 1.90e-159 457
Msa0145180 MtrunA17_Chr5g0408181 54.242 389 166 5 1 386 82 461 3.80e-152 438
Msa0145180 MtrunA17_Chr1g0164371 51.169 385 184 3 1 384 91 472 4.91e-129 380
Msa0145180 MtrunA17_Chr2g0293421 31.234 397 264 7 1 391 98 491 7.17e-68 223
Msa0145180 MtrunA17_Chr2g0293411 31.407 398 263 7 1 390 94 489 2.35e-64 213
Msa0145180 MtrunA17_Chr8g0381541 31.407 398 265 5 1 391 96 492 8.14e-62 207
Msa0145180 MtrunA17_Chr7g0226771 34.626 361 222 8 6 359 89 442 4.75e-61 204
Msa0145180 MtrunA17_Chr8g0381571 32.240 366 240 5 1 359 96 460 1.22e-58 198
Msa0145180 MtrunA17_Chr3g0113321 31.319 364 234 6 3 357 82 438 3.82e-58 197
Msa0145180 MtrunA17_Chr8g0341951 32.312 359 232 8 6 359 93 445 9.24e-58 196
Msa0145180 MtrunA17_Chr6g0455461 30.390 385 256 8 5 384 83 460 1.32e-57 195
Msa0145180 MtrunA17_Chr5g0443731 31.593 383 250 5 7 381 86 464 2.72e-57 194
Msa0145180 MtrunA17_Chr3g0078411 29.688 384 260 7 5 384 83 460 6.67e-57 193
Msa0145180 MtrunA17_Chr8g0388921 30.287 383 261 4 9 386 94 475 4.05e-56 191
Msa0145180 MtrunA17_Chr7g0219961 28.906 384 264 6 4 384 82 459 1.25e-55 190
Msa0145180 MtrunA17_Chr3g0089351 29.793 386 262 8 1 384 13 391 1.47e-55 188
Msa0145180 MtrunA17_Chr5g0400421 32.225 391 256 7 1 384 98 486 5.52e-55 189
Msa0145180 MtrunA17_Chr5g0443401 31.202 391 255 7 1 384 90 473 5.66e-55 188
Msa0145180 MtrunA17_Chr3g0089361 31.620 389 257 8 1 387 95 476 8.79e-55 188
Msa0145180 MtrunA17_Chr8g0372711 31.180 356 242 2 4 358 101 454 4.59e-54 186
Msa0145180 MtrunA17_Chr3g0107511 30.179 391 261 5 6 385 89 478 2.12e-53 184
Msa0145180 MtrunA17_Chr3g0107501 29.275 386 265 4 6 384 89 473 1.56e-52 182
Msa0145180 MtrunA17_Chr3g0141801 31.026 390 259 6 2 384 94 480 1.80e-52 182
Msa0145180 MtrunA17_Chr5g0403931 31.282 390 256 7 9 389 95 481 4.01e-52 181
Msa0145180 MtrunA17_Chr8g0380471 28.608 388 272 3 1 384 86 472 1.52e-50 177
Msa0145180 MtrunA17_Chr8g0339861 31.152 382 247 10 19 391 115 489 9.68e-50 175
Msa0145180 MtrunA17_Chr5g0400411 31.202 391 260 6 1 384 97 485 1.52e-49 174
Msa0145180 MtrunA17_Chr8g0373441 31.437 334 209 8 3 325 86 410 5.53e-46 163
Msa0145180 MtrunA17_Chr8g0372411 28.297 364 250 7 3 359 92 451 1.73e-45 163
Msa0145180 MtrunA17_Chr5g0397971 27.824 363 252 7 3 359 84 442 1.32e-43 158
Msa0145180 MtrunA17_Chr8g0380931 27.136 398 270 5 1 384 110 501 2.09e-43 158
Msa0145180 MtrunA17_Chr6g0478161 27.793 367 248 7 3 359 103 462 5.57e-40 148
Msa0145180 MtrunA17_Chr5g0404861 42.149 121 67 1 245 362 15 135 1.75e-28 109
Msa0145180 MtrunA17_Chr4g0000151 37.324 142 87 2 251 391 5 145 6.87e-28 107
Msa0145180 MtrunA17_Chr8g0381561 44.231 104 57 1 257 359 8 111 8.23e-27 103
Msa0145180 MtrunA17_Chr8g0334941 30.769 260 152 9 129 375 62 306 1.02e-26 109
Msa0145180 MtrunA17_Chr8g0334891 26.515 396 252 15 1 375 84 461 1.36e-26 111
Msa0145180 MtrunA17_Chr6g0463551 29.444 180 118 3 112 284 12 189 4.93e-26 103
Msa0145180 MtrunA17_Chr4g0004601 25.501 349 220 11 48 367 172 509 4.08e-24 104
Msa0145180 MtrunA17_Chr8g0381551 27.966 236 164 3 1 231 96 330 8.66e-23 98.2
Msa0145180 MtrunA17_Chr5g0437001 40.741 108 60 1 252 355 1 108 3.64e-22 92.4
Msa0145180 MtrunA17_Chr7g0235261 24.615 390 248 13 10 367 113 488 5.68e-22 97.8
Msa0145180 MtrunA17_Chr1g0161671 27.928 222 156 2 12 229 92 313 3.85e-21 93.2
Msa0145180 MtrunA17_Chr6g0463541 39.423 104 63 0 280 383 2 105 1.59e-20 86.3
Msa0145180 MtrunA17_Chr8g0362731 26.425 386 238 16 14 367 15 386 1.99e-20 92.4
Msa0145180 MtrunA17_Chr2g0286091 24.623 398 251 11 28 387 117 503 2.71e-19 89.7
Msa0145180 MtrunA17_Chr3g0089381 31.875 160 108 1 125 284 34 192 6.77e-19 84.7
Msa0145180 MtrunA17_Chr3g0135841 29.804 255 151 7 121 358 260 503 8.83e-19 88.2
Msa0145180 MtrunA17_Chr8g0336361 23.389 419 255 12 10 367 123 536 1.04e-18 88.2
Msa0145180 MtrunA17_Chr4g0035921 29.457 258 147 9 135 362 229 481 1.31e-17 84.7
Msa0145180 MtrunA17_Chr1g0162811 26.757 370 232 15 1 339 84 445 1.61e-17 84.3
Msa0145180 MtrunA17_Chr4g0046351 26.210 248 158 8 146 374 245 486 1.85e-17 84.3
Msa0145180 MtrunA17_Chr6g0457421 28.926 242 155 7 133 362 244 480 3.78e-17 83.2
Msa0145180 MtrunA17_Chr1g0161641 40.789 76 44 1 285 359 13 88 1.72e-16 74.3
Msa0145180 MtrunA17_Chr6g0458561 29.348 184 117 6 188 362 318 497 2.49e-16 80.9
Msa0145180 MtrunA17_Chr1g0207841 27.132 258 152 8 139 369 241 489 4.98e-16 79.7
Msa0145180 MtrunA17_Chr3g0089291 28.767 219 148 7 9 225 21 233 5.00e-16 77.0
Msa0145180 MtrunA17_Chr5g0400391 36.667 90 56 1 303 391 2 91 5.05e-16 73.6
Msa0145180 MtrunA17_Chr1g0160861 25.764 229 155 6 147 365 86 309 1.20e-15 77.4
Msa0145180 MtrunA17_Chr4g0061381 30.396 227 136 9 132 343 233 452 1.30e-15 78.6
Msa0145180 MtrunA17_Chr4g0046331 25.101 247 160 8 146 372 245 486 1.89e-15 78.2
Msa0145180 MtrunA17_Chr1g0160851 25.110 227 157 5 147 364 245 467 2.32e-15 77.8
Msa0145180 MtrunA17_Chr4g0013471 25.896 251 168 6 1 246 96 333 2.43e-15 77.0
Msa0145180 MtrunA17_Chr4g0046321 24.898 245 161 8 146 372 245 484 3.82e-15 77.0
Msa0145180 MtrunA17_Chr1g0151221 28.631 241 150 7 132 358 263 495 4.55e-15 77.0
Msa0145180 MtrunA17_Chr3g0128461 27.074 229 146 8 150 366 282 501 5.02e-15 76.6
Msa0145180 MtrunA17_Chr5g0405001 26.556 241 150 6 144 362 246 481 8.53e-15 75.9
Msa0145180 MtrunA17_Chr8g0339331 29.032 186 115 7 188 362 305 484 1.18e-14 75.5
Msa0145180 MtrunA17_Chr4g0000161 27.542 236 161 5 1 231 96 326 1.86e-14 73.9
Msa0145180 MtrunA17_Chr8g0377341 25.831 391 237 17 5 358 119 493 1.89e-14 75.1
Msa0145180 MtrunA17_Chr1g0174451 25.339 221 146 5 139 343 240 457 1.96e-14 74.7
Msa0145180 MtrunA17_Chr8g0364081 22.670 397 256 11 18 369 133 523 2.14e-14 74.7
Msa0145180 MtrunA17_Chr1g0161661 39.759 83 49 1 303 384 14 96 2.99e-14 68.2
Msa0145180 MtrunA17_Chr7g0215181 27.572 243 156 7 134 362 246 482 6.82e-14 73.2
Msa0145180 MtrunA17_Chr5g0431511 27.803 223 145 7 150 362 254 470 7.00e-14 73.2
Msa0145180 MtrunA17_Chr5g0436991 29.661 118 78 2 113 229 43 156 9.65e-14 68.6
Msa0145180 MtrunA17_Chr5g0401681 24.434 221 159 5 146 364 249 463 9.97e-14 72.8
Msa0145180 MtrunA17_Chr2g0296651 26.601 203 133 5 147 343 250 442 1.09e-13 72.4
Msa0145180 MtrunA17_Chr2g0314721 27.344 256 161 9 146 388 254 497 1.42e-13 72.0
Msa0145180 MtrunA17_Chr5g0396521 23.963 217 127 5 183 365 333 545 1.86e-13 72.0
Msa0145180 MtrunA17_Chr4g0000171 26.695 236 163 5 1 231 96 326 1.89e-13 70.9
Msa0145180 MtrunA17_Chr8g0372251 25.103 243 143 6 120 339 224 450 2.47e-13 71.6
Msa0145180 MtrunA17_Chr3g0116741 26.697 221 151 7 146 358 262 479 3.21e-13 71.2
Msa0145180 MtrunA17_Chr0c19g0493771 22.751 189 135 3 182 363 437 621 3.54e-13 71.2
Msa0145180 MtrunA17_Chr4g0030711 25.490 255 162 7 139 369 240 490 6.21e-13 70.1
Msa0145180 MtrunA17_Chr8g0370641 26.606 218 146 6 151 358 272 485 7.58e-13 70.1
Msa0145180 MtrunA17_Chr8g0354531 23.469 392 258 14 23 380 254 637 8.02e-13 70.1
Msa0145180 MtrunA17_Chr4g0024771 22.192 365 253 14 1 339 86 445 8.23e-13 69.7
Msa0145180 MtrunA17_Chr2g0313761 22.589 394 270 11 2 367 103 489 1.03e-12 69.7
Msa0145180 MtrunA17_Chr5g0445421 23.140 363 239 12 1 343 160 502 1.20e-12 69.3
Msa0145180 MtrunA17_Chr3g0116681 25.112 223 158 6 147 362 251 471 1.30e-12 69.3
Msa0145180 MtrunA17_Chr4g0046681 26.946 167 107 7 183 339 16 177 1.36e-12 67.0
Msa0145180 MtrunA17_Chr3g0101631 28.780 205 120 7 151 339 247 441 1.40e-12 68.9
Msa0145180 MtrunA17_Chr4g0039391 24.670 227 160 6 146 365 251 473 1.75e-12 68.9
Msa0145180 MtrunA17_Chr5g0419451 22.798 386 261 13 3 359 108 485 1.83e-12 68.9
Msa0145180 MtrunA17_Chr8g0382901 21.842 380 255 13 1 355 74 436 1.83e-12 69.3
Msa0145180 MtrunA17_Chr4g0020041 24.471 331 209 12 47 358 158 466 2.58e-12 68.2
Msa0145180 MtrunA17_Chr1g0193811 22.816 412 278 13 2 382 108 510 3.26e-12 68.2
Msa0145180 MtrunA17_Chr8g0387101 28.947 190 122 4 186 363 289 477 4.00e-12 67.8
Msa0145180 MtrunA17_Chr3g0101611 23.500 400 258 16 1 363 84 472 4.05e-12 67.8
Msa0145180 MtrunA17_Chr4g0039901 24.887 221 154 6 147 358 246 463 4.25e-12 67.8
Msa0145180 MtrunA17_Chr4g0058211 25.532 188 131 3 189 370 10 194 5.40e-12 65.1
Msa0145180 MtrunA17_Chr2g0313801 22.102 371 248 12 29 367 133 494 6.03e-12 67.0
Msa0145180 MtrunA17_Chr2g0288661 22.111 398 269 12 1 367 109 496 8.64e-12 66.6
Msa0145180 MtrunA17_Chr1g0179811 25.088 283 179 9 119 381 263 532 8.99e-12 66.6
Msa0145180 MtrunA17_Chr4g0053621 23.474 213 153 6 135 344 242 447 9.87e-12 66.6
Msa0145180 MtrunA17_Chr4g0052861 25.926 216 147 7 146 357 249 455 1.12e-11 66.2
Msa0145180 MtrunA17_Chr3g0086691 28.049 246 157 8 132 362 234 474 1.12e-11 66.2
Msa0145180 MtrunA17_Chr2g0296661 26.904 197 138 3 150 344 256 448 1.23e-11 66.2
Msa0145180 MtrunA17_Chr1g0164211 23.684 228 161 6 147 365 242 465 1.51e-11 65.9
Msa0145180 MtrunA17_Chr3g0101651 23.324 373 245 15 1 339 85 450 1.64e-11 65.9
Msa0145180 MtrunA17_Chr7g0262111 25.065 387 258 14 2 366 106 482 2.12e-11 65.5
Msa0145180 MtrunA17_Chr6g0466901 29.032 217 129 10 146 343 257 467 2.14e-11 65.5
Msa0145180 MtrunA17_Chr7g0246221 25.862 232 157 7 136 358 242 467 2.32e-11 65.5
Msa0145180 MtrunA17_Chr8g0355961 26.852 216 143 7 139 343 244 455 2.58e-11 65.1
Msa0145180 MtrunA17_Chr8g0357421 25.000 400 261 18 1 370 84 474 2.64e-11 65.1
Msa0145180 MtrunA17_Chr3g0101711 23.118 372 247 17 1 339 84 449 2.79e-11 65.1
Msa0145180 MtrunA17_Chr5g0446151 25.064 391 247 17 1 358 88 465 3.31e-11 64.7
Msa0145180 MtrunA17_Chr4g0058191 24.725 182 128 3 195 370 288 466 3.70e-11 64.7
Msa0145180 MtrunA17_Chr3g0101661 23.784 370 246 14 1 339 85 449 3.74e-11 64.7
Msa0145180 MtrunA17_Chr5g0401691 21.160 293 200 8 78 364 213 480 3.96e-11 64.7
Msa0145180 MtrunA17_Chr4g0030701 25.896 251 159 7 139 366 238 484 4.52e-11 64.3
Msa0145180 MtrunA17_Chr4g0063221 26.344 186 125 5 199 378 326 505 5.52e-11 64.3
Msa0145180 MtrunA17_Chr1g0176831 25.100 251 167 8 146 385 273 513 5.66e-11 64.3
Msa0145180 MtrunA17_Chr4g0052881 23.116 199 145 4 147 343 251 443 6.94e-11 63.9
Msa0145180 MtrunA17_Chr3g0101751 24.866 374 239 18 1 340 89 454 7.36e-11 63.9
Msa0145180 MtrunA17_Chr3g0086661 28.745 247 154 9 132 362 234 474 7.45e-11 63.9
Msa0145180 MtrunA17_Chr3g0086651 28.049 246 157 8 132 362 234 474 7.72e-11 63.5
Msa0145180 MtrunA17_Chr2g0280011 29.348 184 115 5 199 369 9 190 8.63e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145180 AT3G19270.2 64.872 390 133 3 1 389 81 467 0.0 533
Msa0145180 AT3G19270.1 65.278 360 121 3 1 359 81 437 8.49e-177 500
Msa0145180 AT5G45340.1 54.639 388 168 3 1 388 83 462 5.39e-161 461
Msa0145180 AT4G19230.1 54.897 388 167 3 1 388 83 462 6.10e-161 461
Msa0145180 AT4G19230.2 52.713 387 173 5 1 386 83 460 2.80e-150 434
Msa0145180 AT5G45340.2 54.722 360 155 3 1 360 83 434 7.69e-150 432
Msa0145180 AT2G29090.3 53.230 387 176 4 1 385 1 384 5.70e-147 422
Msa0145180 AT2G29090.2 53.230 387 176 4 1 385 96 479 2.93e-144 419
Msa0145180 AT2G29090.1 53.230 387 176 4 1 385 96 479 2.93e-144 419
Msa0145180 AT1G05160.2 32.737 391 254 6 1 384 98 486 6.37e-71 231
Msa0145180 AT1G05160.1 32.737 391 254 6 1 384 98 486 6.37e-71 231
Msa0145180 AT2G32440.2 31.888 392 260 5 1 387 97 486 1.11e-66 220
Msa0145180 AT2G32440.1 31.888 392 260 5 1 387 97 486 1.11e-66 220
Msa0145180 AT2G29090.4 49.123 228 112 3 1 227 96 320 2.01e-63 207
Msa0145180 AT5G36110.1 33.838 396 248 8 1 389 89 477 3.22e-59 200
Msa0145180 AT5G05690.1 33.333 363 228 6 3 358 84 439 1.46e-58 198
Msa0145180 AT1G19630.1 32.143 392 255 7 2 387 88 474 8.15e-55 188
Msa0145180 AT1G19630.3 32.143 364 237 6 2 360 88 446 9.59e-53 182
Msa0145180 AT5G38970.2 28.375 363 251 6 6 364 4 361 3.55e-52 179
Msa0145180 AT5G38970.4 28.375 363 251 6 6 364 4 361 3.55e-52 179
Msa0145180 AT3G50660.1 31.002 429 231 11 9 387 98 511 3.94e-52 182
Msa0145180 AT5G38970.1 28.297 364 252 6 6 365 85 443 1.50e-51 179
Msa0145180 AT5G05690.3 32.515 326 206 6 40 358 2 320 2.00e-50 173
Msa0145180 AT3G30180.1 29.834 362 247 6 6 364 85 442 6.29e-50 175
Msa0145180 AT1G12740.2 28.415 366 248 5 6 363 93 452 1.15e-48 172
Msa0145180 AT1G12740.1 28.415 366 248 5 6 363 87 446 1.17e-48 172
Msa0145180 AT5G05690.2 32.188 320 207 4 3 319 84 396 3.90e-48 169
Msa0145180 AT3G13730.2 30.303 363 239 8 6 359 107 464 6.95e-48 169
Msa0145180 AT3G13730.1 30.303 363 239 8 6 359 107 464 1.02e-47 170
Msa0145180 AT1G12740.4 28.226 372 247 6 6 363 87 452 1.06e-46 167
Msa0145180 AT2G42850.1 29.351 385 259 7 6 384 102 479 1.03e-45 164
Msa0145180 AT4G36380.1 30.685 365 236 11 6 358 125 484 2.05e-45 164
Msa0145180 AT5G38970.3 28.527 319 221 5 6 322 85 398 2.03e-44 159
Msa0145180 AT1G19630.2 32.000 325 211 6 2 321 88 407 1.46e-42 154
Msa0145180 AT1G55940.1 27.989 368 250 10 3 358 99 463 1.83e-41 152
Msa0145180 AT5G14400.3 29.315 365 221 12 6 360 52 389 2.28e-41 150
Msa0145180 AT5G14400.1 29.558 362 220 11 10 362 2 337 2.74e-41 150
Msa0145180 AT1G55940.2 27.346 373 256 10 3 363 99 468 3.72e-41 152
Msa0145180 AT5G14400.2 29.235 366 224 11 6 362 52 391 4.34e-41 150
Msa0145180 AT4G15393.2 29.155 343 226 8 21 354 103 437 1.58e-37 142
Msa0145180 AT1G65670.1 29.912 341 223 7 21 354 103 434 5.47e-37 140
Msa0145180 AT3G50660.2 29.651 344 199 8 9 319 98 431 6.54e-37 139
Msa0145180 AT1G73340.1 25.753 365 255 5 3 359 96 452 1.25e-36 139
Msa0145180 AT5G48000.2 26.076 395 273 10 1 384 86 472 2.93e-36 138
Msa0145180 AT5G48000.4 26.076 395 273 10 1 384 86 472 2.93e-36 138
Msa0145180 AT5G48000.7 26.076 395 273 10 1 384 86 472 2.93e-36 138
Msa0145180 AT5G48000.6 26.076 395 273 10 1 384 86 472 2.93e-36 138
Msa0145180 AT5G48000.5 26.076 395 273 10 1 384 86 472 2.93e-36 138
Msa0145180 AT5G48000.3 26.076 395 273 10 1 384 86 472 2.93e-36 138
Msa0145180 AT5G48000.1 26.276 392 276 10 1 384 127 513 5.36e-36 138
Msa0145180 AT1G78490.1 27.174 368 258 7 3 363 88 452 8.13e-36 137
Msa0145180 AT3G44970.1 27.500 360 249 8 11 362 96 451 5.84e-35 135
Msa0145180 AT5G36130.1 47.143 140 72 2 252 389 1 140 4.74e-33 121
Msa0145180 AT4G15396.3 27.778 342 234 7 21 354 103 439 5.42e-33 129
Msa0145180 AT4G15396.1 27.778 342 234 7 21 354 103 439 5.87e-33 129
Msa0145180 AT4G15300.3 29.107 347 222 12 21 354 93 428 1.13e-32 128
Msa0145180 AT4G15300.2 29.107 347 222 12 21 354 103 438 1.25e-32 128
Msa0145180 AT4G15300.1 28.532 361 220 14 21 354 101 450 7.52e-30 120
Msa0145180 AT5G36110.2 29.866 298 197 6 1 293 89 379 9.75e-30 119
Msa0145180 AT3G30290.1 26.100 341 240 7 21 354 33 368 7.55e-29 117
Msa0145180 AT4G15393.1 27.541 305 208 7 21 320 103 399 1.11e-27 113
Msa0145180 AT1G12740.3 25.175 286 203 4 6 286 87 366 1.70e-27 112
Msa0145180 AT1G78490.2 26.380 326 225 7 3 320 88 406 2.59e-26 109
Msa0145180 AT4G15396.2 26.163 344 216 8 21 354 103 418 1.38e-25 108
Msa0145180 AT4G15396.4 26.316 304 215 6 21 320 103 401 1.69e-24 104
Msa0145180 AT5G14400.4 27.431 288 191 10 6 284 52 330 6.73e-24 101
Msa0145180 AT1G11680.1 23.940 401 274 13 1 380 86 476 8.16e-23 100
Msa0145180 AT2G42850.2 27.425 299 204 7 1 293 97 388 9.01e-23 99.4
Msa0145180 AT4G36380.2 27.875 287 194 9 6 284 125 406 1.36e-22 99.4
Msa0145180 AT4G15310.1 26.979 341 238 7 25 359 110 445 2.07e-22 99.4
Msa0145180 AT4G15393.3 26.437 261 181 5 63 319 112 365 8.49e-22 96.3
Msa0145180 AT5G67310.1 29.565 230 147 8 139 361 248 469 5.58e-18 86.3
Msa0145180 AT4G37370.1 24.017 229 164 5 147 372 247 468 1.73e-17 84.7
Msa0145180 AT4G37340.1 25.660 265 177 7 110 364 207 461 8.26e-17 82.4
Msa0145180 AT4G37320.1 25.000 220 159 3 147 365 248 462 9.42e-17 82.4
Msa0145180 AT5G24910.1 21.636 379 250 10 17 358 133 501 1.40e-16 82.0
Msa0145180 AT4G37400.1 26.860 242 160 6 126 358 223 456 2.23e-16 81.3
Msa0145180 AT2G26170.2 29.707 239 142 7 132 354 173 401 2.35e-16 80.9
Msa0145180 AT2G26170.1 29.707 239 142 7 132 354 256 484 4.21e-16 80.5
Msa0145180 AT4G13770.1 23.858 394 265 12 1 362 77 467 4.21e-16 80.5
Msa0145180 AT2G45580.2 26.293 232 153 6 133 351 84 310 4.41e-16 79.3
Msa0145180 AT2G45580.1 26.293 232 153 6 133 351 238 464 8.70e-16 79.3
Msa0145180 AT5G04330.1 22.785 395 264 10 1 358 78 468 1.16e-15 79.0
Msa0145180 AT4G27710.1 26.494 385 232 15 35 383 143 512 1.94e-15 78.6
Msa0145180 AT1G50520.1 23.673 245 170 5 139 370 250 490 2.22e-15 78.2
Msa0145180 AT5G25120.1 30.000 240 132 12 170 383 262 491 3.06e-15 77.8
Msa0145180 AT4G37410.1 26.872 227 151 7 132 350 230 449 3.10e-15 77.8
Msa0145180 AT5G36140.1 26.293 232 159 7 1 227 85 309 3.15e-15 76.6
Msa0145180 AT4G37310.1 25.620 242 173 4 139 373 242 483 3.27e-15 77.8
Msa0145180 AT1G66540.2 25.333 225 151 6 147 364 75 289 4.21e-15 76.3
Msa0145180 AT4G37360.1 28.415 183 125 4 184 364 283 461 5.44e-15 77.0
Msa0145180 AT2G28850.1 21.629 356 255 7 28 365 114 463 5.82e-15 77.0
Msa0145180 AT2G34490.1 22.792 351 236 12 28 356 114 451 6.01e-15 77.0
Msa0145180 AT2G34500.1 22.626 358 224 14 28 356 113 446 6.07e-15 76.6
Msa0145180 AT1G66540.1 25.333 225 151 6 147 364 134 348 6.88e-15 76.3
Msa0145180 AT5G57220.1 26.877 253 167 7 121 363 211 455 7.60e-15 76.6
Msa0145180 AT5G25130.1 30.000 180 115 6 186 358 282 457 9.89e-15 76.3
Msa0145180 AT3G20940.1 26.360 239 160 5 139 364 247 482 3.25e-14 74.7
Msa0145180 AT3G28740.1 25.514 243 172 5 124 363 232 468 3.28e-14 74.7
Msa0145180 AT4G37430.1 25.424 236 162 6 135 363 236 464 3.65e-14 74.3
Msa0145180 AT1G74110.1 22.059 408 265 13 1 364 113 511 8.53e-14 73.6
Msa0145180 AT4G31940.1 25.000 200 132 6 158 343 274 469 1.46e-13 72.8
Msa0145180 AT3G26280.2 25.909 220 146 8 137 343 254 469 1.91e-13 72.4
Msa0145180 AT3G26280.1 25.909 220 146 8 137 343 237 452 2.14e-13 72.0
Msa0145180 AT2G24180.1 26.829 205 135 7 146 339 248 448 4.91e-13 70.9
Msa0145180 AT4G15110.1 23.041 217 129 3 183 365 341 553 5.19e-13 70.9
Msa0145180 AT4G37330.1 24.664 223 154 4 147 364 245 458 5.69e-13 70.9
Msa0145180 AT3G53130.1 21.891 402 257 15 10 363 121 513 2.34e-12 68.9
Msa0145180 AT2G22330.1 25.214 234 152 7 151 370 288 512 4.39e-12 68.2
Msa0145180 AT5G25140.1 30.108 186 111 9 167 339 259 438 4.82e-12 67.8
Msa0145180 AT1G64940.1 28.191 188 126 3 186 366 298 483 4.91e-12 67.8
Msa0145180 AT2G22330.2 25.214 234 152 7 151 370 311 535 4.91e-12 68.2
Msa0145180 AT2G23190.1 23.171 246 180 5 122 364 266 505 6.11e-12 67.8
Msa0145180 AT3G26160.1 23.963 217 153 4 137 343 236 450 6.54e-12 67.4
Msa0145180 AT2G23220.1 21.818 220 164 4 147 364 263 476 7.64e-12 67.4
Msa0145180 AT2G46950.1 22.901 393 265 11 2 366 165 547 9.72e-12 67.0
Msa0145180 AT5G07990.1 25.424 236 155 7 146 365 243 473 1.84e-11 66.2
Msa0145180 AT5G36220.2 23.214 224 160 5 146 365 107 322 1.85e-11 65.5
Msa0145180 AT5G36220.1 23.214 224 160 5 146 365 253 468 2.22e-11 65.9
Msa0145180 AT3G26290.1 26.238 202 135 6 148 339 245 442 2.97e-11 65.5
Msa0145180 AT3G26290.2 26.238 202 135 6 148 339 258 455 3.08e-11 65.5
Msa0145180 AT3G26230.1 29.448 163 100 7 193 343 289 448 4.57e-11 64.7
Msa0145180 AT1G75130.1 23.034 356 241 13 48 380 150 495 5.01e-11 64.7

Find 124 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAATGGCATGAAAGTATT+TGG 0.142965 1_4:-4854589 None:intergenic
GGCATTGCTTTCCACCCTTT+TGG 0.171251 1_4:-4854390 None:intergenic
AGGGCTAAGGCTTCAATTTC+AGG 0.177274 1_4:-4852416 None:intergenic
GCTTATACCTTATAGGTAAT+TGG 0.207342 1_4:-4853900 None:intergenic
ATTAACTGCTTATACCTTAT+AGG 0.209223 1_4:-4853907 None:intergenic
AAGAGCTAAAGAAGAATTAT+TGG 0.218720 1_4:+4852904 Msa0145180:CDS
CCAAATGATGGATCATAATA+AGG 0.218766 1_4:-4854660 None:intergenic
AGCCAAAGTTGAATCCATTT+TGG 0.251756 1_4:-4851340 None:intergenic
TCAGCTACTGCTTCTCTAAA+TGG 0.254249 1_4:-4854134 None:intergenic
GAAATTGGAGATAACATTAT+TGG 0.259111 1_4:+4853215 Msa0145180:CDS
TTGGAGAAGAAGAAAAGATT+TGG 0.286221 1_4:-4851517 None:intergenic
AGAAGAAAAGATTTGGGTCT+TGG 0.292356 1_4:-4851510 None:intergenic
ATATTATCTGATGATGAAAT+TGG 0.294172 1_4:+4853200 Msa0145180:CDS
CCCTTTCCACCATCAAATCT+TGG 0.312974 1_4:+4852435 Msa0145180:CDS
ATGGTAAACTACAGCTGAAT+TGG 0.316888 1_4:+4853859 Msa0145180:CDS
GTTCTAATAATACACCAAAA+TGG 0.319205 1_4:+4851326 Msa0145180:five_prime_UTR
TAAATAGAGTCAAGGGGATT+TGG 0.319677 1_4:+4855585 Msa0145180:three_prime_UTR
ATTAGAACAAGAATCTAATA+AGG 0.320066 1_4:-4851311 None:intergenic
AAAGAACATAAATGAAAATA+AGG 0.325706 1_4:-4851388 None:intergenic
CCTTATTATGATCCATCATT+TGG 0.343940 1_4:+4854660 Msa0145180:CDS
ATATTCAAGACGAACATTCT+TGG 0.346956 1_4:+4852188 Msa0145180:five_prime_UTR
AAACATGCCAATTACCTATA+AGG 0.352173 1_4:+4853893 Msa0145180:CDS
AAGATTGGAAAAGCCTCAAT+AGG 0.355720 1_4:+4855511 Msa0145180:three_prime_UTR
GGCATGAAAGTATTTGGTTT+TGG 0.356492 1_4:-4854583 None:intergenic
CCAAATACTTTCATGCCATT+TGG 0.359912 1_4:+4854589 Msa0145180:CDS
CCATTCAAAGGCAATGGAAA+TGG 0.361111 1_4:-4855257 None:intergenic
CCTTTCCACCATCAAATCTT+GGG 0.366162 1_4:+4852436 Msa0145180:CDS
ATCATTTGGTCGTCAAGTTT+AGG 0.368718 1_4:+4854674 Msa0145180:CDS
CTTGAAGGGTTGAATTTATG+AGG 0.372482 1_4:-4854456 None:intergenic
CACCAAAATGGATTCAACTT+TGG 0.379629 1_4:+4851338 Msa0145180:five_prime_UTR
CCTCGATTCACTTCGCAACT+TGG 0.379709 1_4:+4852391 Msa0145180:CDS
TGGTTCAATGGGGTGGGCGG+TGG 0.381725 1_4:+4851455 Msa0145180:five_prime_UTR
TCATTTCCAACTCAAATTCC+TGG 0.382346 1_4:+4852948 Msa0145180:CDS
CCATTTCCATTGCCTTTGAA+TGG 0.384022 1_4:+4855257 Msa0145180:CDS
TCACACTGTGGGATTCAATA+TGG 0.388946 1_4:+4855233 Msa0145180:CDS
AAACTTCCTCCTGGTTCAAT+GGG 0.390178 1_4:+4851444 Msa0145180:five_prime_UTR
TTTACACATTCGAGAAGTTT+CGG 0.400562 1_4:-4853308 None:intergenic
ATTCAACCCTTCAAGATTTG+AGG 0.401761 1_4:+4854464 Msa0145180:CDS
TGGAGAAGAAGAAAAGATTT+GGG 0.403165 1_4:-4851516 None:intergenic
GAAGAAAAGATTTGGGTCTT+GGG 0.404022 1_4:-4851509 None:intergenic
AAAAGCAAAGAACGTTTGAT+TGG 0.407013 1_4:+4852296 Msa0145180:CDS
AAAACTTCCTCCTGGTTCAA+TGG 0.407546 1_4:+4851443 Msa0145180:five_prime_UTR
AAAAGATTAATTTATGGCTA+TGG 0.410298 1_4:-4855378 None:intergenic
CTTTGAATGGACTCCCAGCC+AGG 0.412377 1_4:+4855270 Msa0145180:CDS
TGGCAATGAGCTTGCTAAGC+TGG 0.415341 1_4:+4854633 Msa0145180:CDS
GGTCTTGGGAGTAGAGTTGA+AGG 0.415849 1_4:-4851495 None:intergenic
GGAAATAATTAGTGAGAGGA+AGG 0.418556 1_4:+4853106 Msa0145180:CDS
ATTCATACCTCAAATCTTGA+AGG 0.422368 1_4:-4854471 None:intergenic
ATCATCACCCCAAGATTTGA+TGG 0.427411 1_4:-4852444 None:intergenic
GTGAGTACCATTTGCGTTTG+AGG 0.428828 1_4:+4852345 Msa0145180:CDS
AGATTGGAAAAGCCTCAATA+GGG 0.441639 1_4:+4855512 Msa0145180:three_prime_UTR
TTTAGCTCTTCCCTCAACCT+TGG 0.449838 1_4:-4852891 None:intergenic
CAAATGATGGATCATAATAA+GGG 0.450882 1_4:-4854659 None:intergenic
TTCCTCCTGGTTCAATGGGG+TGG 0.451347 1_4:+4851448 Msa0145180:five_prime_UTR
GATTCTCTCCAACACCTGGC+TGG 0.454938 1_4:-4855284 None:intergenic
TAATTTATGGCTATGGAAAG+TGG 0.458488 1_4:-4855371 None:intergenic
TGAAGGGTTTGTCCTATGTA+AGG 0.459592 1_4:-4851478 None:intergenic
TCCTCCTGGTTCAATGGGGT+GGG 0.471945 1_4:+4851449 Msa0145180:five_prime_UTR
GGGTTGAATTTATGAGGCTC+TGG 0.474079 1_4:-4854450 None:intergenic
CCAGGATTCCTAATCCCAAA+AGG 0.474118 1_4:+4854375 Msa0145180:intron
CATTCAAAGGCAATGGAAAT+GGG 0.474896 1_4:-4855256 None:intergenic
TGTGTACCAGGAATTTGAGT+TGG 0.476181 1_4:-4852954 None:intergenic
CCAAGATTTGATGGTGGAAA+GGG 0.481164 1_4:-4852435 None:intergenic
AACACAAAACGTGCAGCTTC+AGG 0.483985 1_4:-4852236 None:intergenic
ATCAAATCTTGGGGTGATGA+TGG 0.495039 1_4:+4852446 Msa0145180:CDS
ACTTTCATGCCATTTGGTAG+TGG 0.497443 1_4:+4854595 Msa0145180:CDS
GAAAGATACATCCCCTATTG+AGG 0.501036 1_4:-4855524 None:intergenic
AGCTGTTTCTTGAATTGGAA+AGG 0.501218 1_4:+4853164 Msa0145180:CDS
GCAATCTAGAGCCAAGGTTG+AGG 0.509932 1_4:+4852880 Msa0145180:CDS
AGCTTAGCAAGCTCATTGCC+AGG 0.510940 1_4:-4854631 None:intergenic
TAAGCTTCCTCAAACGCAAA+TGG 0.513067 1_4:-4852352 None:intergenic
ATGGACTCCCAGCCAGGTGT+TGG 0.513265 1_4:+4855276 Msa0145180:CDS
TAAACTTGACGACCAAATGA+TGG 0.513374 1_4:-4854672 None:intergenic
TTGAATTGGAAAGGAGAAGG+AGG 0.514480 1_4:+4853173 Msa0145180:CDS
ACCGCCCACCCCATTGAACC+AGG 0.516185 1_4:-4851453 None:intergenic
TCCTGGTTCAATGGGGTGGG+CGG 0.517607 1_4:+4851452 Msa0145180:five_prime_UTR
CAATCTAGAGCCAAGGTTGA+GGG 0.517826 1_4:+4852881 Msa0145180:CDS
AAAATAAGGTAAGAAGAAAG+AGG 0.522546 1_4:-4851374 None:intergenic
ATTCTCTCCAACACCTGGCT+GGG 0.529923 1_4:-4855283 None:intergenic
ACAATTCACATGGAAAATGA+TGG 0.536909 1_4:+4853840 Msa0145180:CDS
CCCAAGATTTGATGGTGGAA+AGG 0.538660 1_4:-4852436 None:intergenic
TTCTTGAATTGGAAAGGAGA+AGG 0.539562 1_4:+4853170 Msa0145180:CDS
TTTGATGGTGGAAAGGGCTA+AGG 0.541061 1_4:-4852429 None:intergenic
GCAAATGGTACTCACCTTGG+TGG 0.541284 1_4:-4852337 None:intergenic
TTTGATATAAATAGAGTCAA+GGG 0.543565 1_4:+4855578 Msa0145180:three_prime_UTR
GTCTTGGGAGTAGAGTTGAA+GGG 0.543626 1_4:-4851494 None:intergenic
GGTGGGCGGTGGCCTTACAT+AGG 0.543932 1_4:+4851466 Msa0145180:five_prime_UTR
GGGAGTCCATTCAAAGGCAA+TGG 0.544618 1_4:-4855263 None:intergenic
TGAAGGAAATAATTAGTGAG+AGG 0.545555 1_4:+4853102 Msa0145180:CDS
GCGAAGGCAAGAGAGAAACT+TGG 0.545964 1_4:+4853071 Msa0145180:intron
TTTGGTATATAGGTTGGAAG+TGG 0.546819 1_4:+4855205 Msa0145180:intron
CCACAGCTACTGTCATGACA+TGG 0.547135 1_4:+4853261 Msa0145180:CDS
GCATGTACTCCACTACCAAA+TGG 0.553843 1_4:-4854604 None:intergenic
TGATAACTCCAGATTAACAC+TGG 0.555592 1_4:+4851240 None:intergenic
GGTAGATTCTCTCCAACACC+TGG 0.557087 1_4:-4855288 None:intergenic
GAAACTTCTCGAATGTGTAA+AGG 0.561471 1_4:+4853310 Msa0145180:CDS
ACAAGTGCAAAACTTCCTCC+TGG 0.564113 1_4:+4851435 Msa0145180:five_prime_UTR
TTCATACCTCAAATCTTGAA+GGG 0.564125 1_4:-4854470 None:intergenic
AACGCAAATGGTACTCACCT+TGG 0.565917 1_4:-4852340 None:intergenic
AATTATTGGATTGTTGACAA+TGG 0.572734 1_4:+4852918 Msa0145180:CDS
TGGATGTAAGTGTGTGATGT+TGG 0.574017 1_4:+4852208 Msa0145180:exon
CAGGATTCCTAATCCCAAAA+GGG 0.575886 1_4:+4854376 Msa0145180:intron
ATTTGATATAAATAGAGTCA+AGG 0.579853 1_4:+4855577 Msa0145180:three_prime_UTR
TATCCTACAAAATCCCATGC+AGG 0.583588 1_4:+4855476 Msa0145180:three_prime_UTR
GTATATAGGTTGGAAGTGGT+AGG 0.592193 1_4:+4855209 Msa0145180:intron
CAAGTTGCGAAGTGAATCGA+GGG 0.600200 1_4:-4852390 None:intergenic
TTGATATAAATAGAGTCAAG+GGG 0.607883 1_4:+4855579 Msa0145180:three_prime_UTR
CTTTCCACCATCAAATCTTG+GGG 0.609532 1_4:+4852437 Msa0145180:CDS
AGTGGAGTACATGCTTGTCC+TGG 0.616452 1_4:+4854613 Msa0145180:CDS
GATTGGAAAAGCCTCAATAG+GGG 0.625615 1_4:+4855513 Msa0145180:three_prime_UTR
CCAAGTTGCGAAGTGAATCG+AGG 0.629437 1_4:-4852391 None:intergenic
CTGGCTGGGAGTCCATTCAA+AGG 0.643521 1_4:-4855269 None:intergenic
GATTCCTAATCCCAAAAGGG+TGG 0.645660 1_4:+4854379 Msa0145180:CDS
CCATGTCATGACAGTAGCTG+TGG 0.646176 1_4:-4853261 None:intergenic
GTTTGAGGAAGCTTATTCAG+AGG 0.650161 1_4:+4852360 Msa0145180:CDS
CACAGCTACTGTCATGACAT+GGG 0.650868 1_4:+4853262 Msa0145180:CDS
AAGTGGTAGGATCACACTGT+GGG 0.657629 1_4:+4855222 Msa0145180:CDS
GTAGCTGATGTAGAGTACAA+AGG 0.662288 1_4:+4854149 Msa0145180:CDS
TGATGAATGTTTCTGAACAG+TGG 0.669621 1_4:-4854411 None:intergenic
ATCACCCCAAGATTTGATGG+TGG 0.682987 1_4:-4852441 None:intergenic
AACTTCCTCCTGGTTCAATG+GGG 0.687690 1_4:+4851445 Msa0145180:five_prime_UTR
GCCCACCCCATTGAACCAGG+AGG 0.708579 1_4:-4851450 None:intergenic
TGAGCAGAAGACAATTCACA+TGG 0.710878 1_4:+4853830 Msa0145180:CDS
GAAGTGGTAGGATCACACTG+TGG 0.723901 1_4:+4855221 Msa0145180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTGCTTATATTAAAAAA+CGG + chr1_4:4851910-4851929 Msa0145180:intron 10.0%
!!! TAATATATTAATTTTAGGTA+CGG + chr1_4:4852161-4852180 Msa0145180:intron 10.0%
!!! ATTTAACTTAGTTTAATTTT+TGG + chr1_4:4853358-4853377 Msa0145180:intron 10.0%
!! CATTTAATTAAAAAAATGTA+TGG - chr1_4:4855039-4855058 None:intergenic 10.0%
!! AAAGAAAAAAGATTAATTTA+TGG - chr1_4:4855387-4855406 None:intergenic 10.0%
!!! TCAACAATTGTTTTTATATT+AGG + chr1_4:4851278-4851297 Msa0145180:five_prime_UTR 15.0%
!! AAAGAACATAAATGAAAATA+AGG - chr1_4:4851391-4851410 None:intergenic 15.0%
!!! ATAAGTAAATTTTGACTTTT+AGG + chr1_4:4851678-4851697 Msa0145180:intron 15.0%
!! AATTAAAATGTGTCTTATAT+AGG - chr1_4:4852111-4852130 None:intergenic 15.0%
!! AATGTAACTAAAAAACATTA+TGG + chr1_4:4852134-4852153 Msa0145180:intron 15.0%
!! ATAATAATCAATTCAATCAT+TGG - chr1_4:4852678-4852697 None:intergenic 15.0%
!!! CTAAAAAATCTTTTATCATA+TGG - chr1_4:4853752-4853771 None:intergenic 15.0%
!! AATAAAATGTTAGAAACAAA+AGG + chr1_4:4854779-4854798 Msa0145180:intron 15.0%
!!! CATTTGGTTTATTATTTATA+AGG - chr1_4:4854986-4855005 None:intergenic 15.0%
!!! AATAAATGAATTTTTGCATT+TGG - chr1_4:4855002-4855021 None:intergenic 15.0%
!!! CTATATGTAATTTTTTTCAT+AGG + chr1_4:4855427-4855446 Msa0145180:three_prime_UTR 15.0%
!! ATTAGAACAAGAATCTAATA+AGG - chr1_4:4851314-4851333 None:intergenic 20.0%
!! TACTTATATTAAAAAACGGA+GGG - chr1_4:4851665-4851684 None:intergenic 20.0%
!! TTACTTATATTAAAAAACGG+AGG - chr1_4:4851666-4851685 None:intergenic 20.0%
!! TATTCAATTAATGATGTATG+TGG + chr1_4:4851703-4851722 Msa0145180:intron 20.0%
!!! AGTGAAATTTGCTTATATTT+AGG - chr1_4:4851744-4851763 None:intergenic 20.0%
!!! ATAAGCAAATTTCACTTTTT+AGG + chr1_4:4851748-4851767 Msa0145180:intron 20.0%
!! CATTCAATTAATGATGTATT+TGG + chr1_4:4851773-4851792 Msa0145180:intron 20.0%
!!! AGTCAAATTTGCTTATATTT+AGG + chr1_4:4851841-4851860 Msa0145180:intron 20.0%
!! CATTCAATTAATTATGTATG+TGG - chr1_4:4851876-4851895 None:intergenic 20.0%
!!! ATAAGCAAATTTTGACTTTT+AGG - chr1_4:4851901-4851920 None:intergenic 20.0%
!!! AATATCTAAAGTAGTCTTTA+TGG + chr1_4:4852021-4852040 Msa0145180:intron 20.0%
!!! ATGCATAATTAACACTTTTA+AGG + chr1_4:4852469-4852488 Msa0145180:CDS 20.0%
!! TTTAAGGAAATGAAAAAAGT+AGG + chr1_4:4852485-4852504 Msa0145180:intron 20.0%
!!! TTTACTAAATTGTTGTTATG+TGG + chr1_4:4852751-4852770 Msa0145180:intron 20.0%
!!! ATATTATCTGATGATGAAAT+TGG + chr1_4:4853200-4853219 Msa0145180:CDS 20.0%
!!! TAACTTAGTTTAATTTTTGG+TGG + chr1_4:4853361-4853380 Msa0145180:intron 20.0%
!! TAATAAACACAACAAGAATA+AGG - chr1_4:4854034-4854053 None:intergenic 20.0%
!!! AATCTAAGAATTGAATTTTG+TGG + chr1_4:4854059-4854078 Msa0145180:intron 20.0%
!!! AAAATGGGAAATTTTTTCTA+GGG + chr1_4:4854207-4854226 Msa0145180:intron 20.0%
!! TATGAATGAGTCAATTATAA+TGG + chr1_4:4854487-4854506 Msa0145180:intron 20.0%
!! TCAATTATAATGGTAATACA+TGG + chr1_4:4854497-4854516 Msa0145180:intron 20.0%
!!! ATTTTGTTATTTGTTGATAC+AGG + chr1_4:4854555-4854574 Msa0145180:intron 20.0%
!! AATAAAAAGAGATCAACTAA+TGG + chr1_4:4854736-4854755 Msa0145180:intron 20.0%
!! TTAAATGCACAAATTCATTT+AGG + chr1_4:4855052-4855071 Msa0145180:intron 20.0%
!! AAAAGATTAATTTATGGCTA+TGG - chr1_4:4855381-4855400 None:intergenic 20.0%
!!! TATGTAATTTTTTTCATAGG+TGG + chr1_4:4855430-4855449 Msa0145180:three_prime_UTR 20.0%
!!! ATGTAATTTTTTTCATAGGT+GGG + chr1_4:4855431-4855450 Msa0145180:three_prime_UTR 20.0%
!! ATTTGATATAAATAGAGTCA+AGG + chr1_4:4855577-4855596 Msa0145180:three_prime_UTR 20.0%
!! TTTGATATAAATAGAGTCAA+GGG + chr1_4:4855578-4855597 Msa0145180:three_prime_UTR 20.0%
! GTTCTAATAATACACCAAAA+TGG + chr1_4:4851326-4851345 Msa0145180:five_prime_UTR 25.0%
! AAAATAAGGTAAGAAGAAAG+AGG - chr1_4:4851377-4851396 None:intergenic 25.0%
! TAAAAATGATGAGAGAAACA+TGG - chr1_4:4851586-4851605 None:intergenic 25.0%
!!! TGTTTCTCTCATCATTTTTA+TGG + chr1_4:4851586-4851605 Msa0145180:intron 25.0%
! GTATAAATTTAATGACTCTG+CGG - chr1_4:4851641-4851660 None:intergenic 25.0%
!! AATTTGCTTATATTTAGGAC+CGG - chr1_4:4851846-4851865 None:intergenic 25.0%
!!! GATGTATTTGGTTCTTATTA+TGG + chr1_4:4851785-4851804 Msa0145180:intron 25.0%
! CATTCAATTAATGATGTATG+TGG - chr1_4:4851812-4851831 None:intergenic 25.0%
!! AATTTGCTTATATTTAGGAC+CGG + chr1_4:4851846-4851865 Msa0145180:intron 25.0%
! TTGCTTATATTAAAAAACGG+AGG + chr1_4:4851913-4851932 Msa0145180:intron 25.0%
! TGCTTATATTAAAAAACGGA+GGG + chr1_4:4851914-4851933 Msa0145180:intron 25.0%
!! AATTTAAAATCACGCGATAT+AGG - chr1_4:4852554-4852573 None:intergenic 25.0%
!! CAATTTAAAACCACAATGAT+TGG + chr1_4:4852651-4852670 Msa0145180:intron 25.0%
!! TTCTGGCATTAATTTTTGTA+TGG + chr1_4:4852727-4852746 Msa0145180:intron 25.0%
! AGGGTCAATAATTAATTAAG+TGG + chr1_4:4852802-4852821 Msa0145180:intron 25.0%
! AAGAGCTAAAGAAGAATTAT+TGG + chr1_4:4852904-4852923 Msa0145180:CDS 25.0%
! AATTATTGGATTGTTGACAA+TGG + chr1_4:4852918-4852937 Msa0145180:CDS 25.0%
!!! TTTTACTATACTTTTTGCGA+AGG + chr1_4:4853055-4853074 Msa0145180:intron 25.0%
! GAAATTGGAGATAACATTAT+TGG + chr1_4:4853215-4853234 Msa0145180:CDS 25.0%
!!! TTAATTTTTGGTGGTTTCTA+CGG + chr1_4:4853370-4853389 Msa0145180:intron 25.0%
!! TGAGAACTTTTACTTATGTA+TGG + chr1_4:4853668-4853687 Msa0145180:intron 25.0%
!!! TTTTTTTAAGTACCAATCCA+TGG + chr1_4:4853722-4853741 Msa0145180:intron 25.0%
! ATTAACTGCTTATACCTTAT+AGG - chr1_4:4853910-4853929 None:intergenic 25.0%
!!! TCAAACTTTGTTATTAGTGT+CGG + chr1_4:4853963-4853982 Msa0145180:intron 25.0%
!! TGAATTTTGTGGAATTTTTC+AGG + chr1_4:4854070-4854089 Msa0145180:intron 25.0%
!!! ATTTGCAAAAGCATTCAAAA+TGG + chr1_4:4854191-4854210 Msa0145180:intron 25.0%
!!! TTTGCAAAAGCATTCAAAAT+GGG + chr1_4:4854192-4854211 Msa0145180:intron 25.0%
!!! CAAAATGGGAAATTTTTTCT+AGG + chr1_4:4854206-4854225 Msa0145180:intron 25.0%
! TTCAGCATAGTATAATAGTA+TGG - chr1_4:4854272-4854291 None:intergenic 25.0%
!! AAATGAACGTTTTTCACATT+GGG - chr1_4:4854299-4854318 None:intergenic 25.0%
!! AAAATGAACGTTTTTCACAT+TGG - chr1_4:4854300-4854319 None:intergenic 25.0%
! ATAATGGTAATACATGGTTA+AGG + chr1_4:4854503-4854522 Msa0145180:intron 25.0%
!!! CAAATGATGGATCATAATAA+GGG - chr1_4:4854662-4854681 None:intergenic 25.0%
!! ATTTTATAACAAGTGCTCTT+AGG - chr1_4:4854873-4854892 None:intergenic 25.0%
! AGAGATATTTGATCAGTTAT+TGG - chr1_4:4855134-4855153 None:intergenic 25.0%
!! TATGTGAAAGATTTTGCTTT+TGG + chr1_4:4855187-4855206 Msa0145180:intron 25.0%
!!! AGATTTTGCTTTTGGTATAT+AGG + chr1_4:4855195-4855214 Msa0145180:intron 25.0%
! ATGCTAGAAAAAGATTCATT+GGG + chr1_4:4855314-4855333 Msa0145180:CDS 25.0%
!!! GCTTTTCCAATCTTTTTTTA+AGG - chr1_4:4855505-4855524 None:intergenic 25.0%
! TTGATATAAATAGAGTCAAG+GGG + chr1_4:4855579-4855598 Msa0145180:three_prime_UTR 25.0%
TGGAGAAGAAGAAAAGATTT+GGG - chr1_4:4851519-4851538 None:intergenic 30.0%
TTGGAGAAGAAGAAAAGATT+TGG - chr1_4:4851520-4851539 None:intergenic 30.0%
TCTTCTTCTCCAAACAAAAA+AGG + chr1_4:4851527-4851546 Msa0145180:five_prime_UTR 30.0%
GCAGAATTATTAGATGAGTA+TGG - chr1_4:4851966-4851985 None:intergenic 30.0%
ATTTGATTCTCTGCATGAAT+TGG - chr1_4:4851999-4852018 None:intergenic 30.0%
ATATTCAAGACGAACATTCT+TGG + chr1_4:4852188-4852207 Msa0145180:five_prime_UTR 30.0%
!!! TCTTTGCTTTTAGGATATGT+TGG - chr1_4:4852287-4852306 None:intergenic 30.0%
!! ATCAAACGTTCTTTGCTTTT+AGG - chr1_4:4852296-4852315 None:intergenic 30.0%
AAAAGCAAAGAACGTTTGAT+TGG + chr1_4:4852296-4852315 Msa0145180:CDS 30.0%
! TATCGCGTGATTTTAAATTG+CGG + chr1_4:4852555-4852574 Msa0145180:intron 30.0%
ACTTGAATCACATTTGAGTA+AGG - chr1_4:4852622-4852641 None:intergenic 30.0%
! ATATTGAAGTGTCACATTTC+TGG + chr1_4:4852710-4852729 Msa0145180:intron 30.0%
! AAATTGTTGTTATGTGGAAG+TGG + chr1_4:4852757-4852776 Msa0145180:intron 30.0%
AAACTGCAAAAGATCAAAGA+TGG - chr1_4:4852829-4852848 None:intergenic 30.0%
!!! TTGCAGTTTTCTTTTGAAGT+TGG + chr1_4:4852840-4852859 Msa0145180:intron 30.0%
! GTTGGTATTCTCAAAGTTTT+TGG + chr1_4:4852858-4852877 Msa0145180:CDS 30.0%
!! ACAATACAAAAAAGCACTCT+TGG + chr1_4:4852974-4852993 Msa0145180:CDS 30.0%
!!! GAAACTTGGAAGTATTTTGA+AGG + chr1_4:4853085-4853104 Msa0145180:CDS 30.0%
TGAAGGAAATAATTAGTGAG+AGG + chr1_4:4853102-4853121 Msa0145180:CDS 30.0%
!!! TTTTGAGCTGTTTCTTGAAT+TGG + chr1_4:4853159-4853178 Msa0145180:CDS 30.0%
TTTACACATTCGAGAAGTTT+CGG - chr1_4:4853311-4853330 None:intergenic 30.0%
! TTTGAGTGAACTTTAACTTC+TGG - chr1_4:4853427-4853446 None:intergenic 30.0%
!!! TTCGTTTTTTACTGTTGAGT+CGG + chr1_4:4853498-4853517 Msa0145180:intron 30.0%
TCAAGTGACACTATAATTTG+TGG + chr1_4:4853788-4853807 Msa0145180:intron 30.0%
ACAATTCACATGGAAAATGA+TGG + chr1_4:4853840-4853859 Msa0145180:CDS 30.0%
AAACATGCCAATTACCTATA+AGG + chr1_4:4853893-4853912 Msa0145180:CDS 30.0%
GCTTATACCTTATAGGTAAT+TGG - chr1_4:4853903-4853922 None:intergenic 30.0%
ACATGAGAATATTATGAACC+AGG + chr1_4:4854357-4854376 Msa0145180:intron 30.0%
TTCATACCTCAAATCTTGAA+GGG - chr1_4:4854473-4854492 None:intergenic 30.0%
ATTCATACCTCAAATCTTGA+AGG - chr1_4:4854474-4854493 None:intergenic 30.0%
!! CCAAATGATGGATCATAATA+AGG - chr1_4:4854663-4854682 None:intergenic 30.0%
CCTTATTATGATCCATCATT+TGG + chr1_4:4854660-4854679 Msa0145180:CDS 30.0%
AACAAAAGGAGATCAATGAA+TGG + chr1_4:4854793-4854812 Msa0145180:intron 30.0%
! TTTCTTTTTCTTCCTTAGAG+TGG + chr1_4:4854949-4854968 Msa0145180:intron 30.0%
!! TTTGCTTTTGGTATATAGGT+TGG + chr1_4:4855199-4855218 Msa0145180:intron 30.0%
CATGCTAGAAAAAGATTCAT+TGG + chr1_4:4855313-4855332 Msa0145180:CDS 30.0%
TGCTAGAAAAAGATTCATTG+GGG + chr1_4:4855315-4855334 Msa0145180:CDS 30.0%
TAATTTATGGCTATGGAAAG+TGG - chr1_4:4855374-4855393 None:intergenic 30.0%
! CACCAAAATGGATTCAACTT+TGG + chr1_4:4851338-4851357 Msa0145180:five_prime_UTR 35.0%
! AGCCAAAGTTGAATCCATTT+TGG - chr1_4:4851343-4851362 None:intergenic 35.0%
!! TGTTTTGTTCTAGGTCGTTT+TGG - chr1_4:4851414-4851433 None:intergenic 35.0%
!!! GCACTTGTTTGTTTTGTTCT+AGG - chr1_4:4851423-4851442 None:intergenic 35.0%
GAAGAAAAGATTTGGGTCTT+GGG - chr1_4:4851512-4851531 None:intergenic 35.0%
AGAAGAAAAGATTTGGGTCT+TGG - chr1_4:4851513-4851532 None:intergenic 35.0%
!!! GCATAGCAACCTTTTTTGTT+TGG - chr1_4:4851539-4851558 None:intergenic 35.0%
AAATGATGAGAGAAACATGG+AGG - chr1_4:4851583-4851602 None:intergenic 35.0%
TAAATTTAATGACTCTGCGG+TGG - chr1_4:4851638-4851657 None:intergenic 35.0%
TAATTATGTATGTGGTCCTC+CGG - chr1_4:4851868-4851887 None:intergenic 35.0%
!! TGCATGAATTGGATTAGTCA+CGG - chr1_4:4851988-4852007 None:intergenic 35.0%
CTAAAGTAGTCTTTATGGTG+TGG + chr1_4:4852026-4852045 Msa0145180:intron 35.0%
AATCATTGGTCCAATCATTG+TGG - chr1_4:4852664-4852683 None:intergenic 35.0%
TGTGATGTGTGGAACAATAA+AGG + chr1_4:4852782-4852801 Msa0145180:intron 35.0%
GTGATGTGTGGAACAATAAA+GGG + chr1_4:4852783-4852802 Msa0145180:intron 35.0%
TCATTTCCAACTCAAATTCC+TGG + chr1_4:4852948-4852967 Msa0145180:CDS 35.0%
!!! GCTTTTTTGTATTGTGTACC+AGG - chr1_4:4852969-4852988 None:intergenic 35.0%
GGAAATAATTAGTGAGAGGA+AGG + chr1_4:4853106-4853125 Msa0145180:CDS 35.0%
!! AGCTGTTTCTTGAATTGGAA+AGG + chr1_4:4853164-4853183 Msa0145180:CDS 35.0%
TTCTTGAATTGGAAAGGAGA+AGG + chr1_4:4853170-4853189 Msa0145180:CDS 35.0%
GAAACTTCTCGAATGTGTAA+AGG + chr1_4:4853310-4853329 Msa0145180:CDS 35.0%
CTCAACAGTAAAAAACGAAG+AGG - chr1_4:4853497-4853516 None:intergenic 35.0%
TGTTGAGTCGGTAATCTAAT+TGG + chr1_4:4853510-4853529 Msa0145180:intron 35.0%
! CGAATATGTGTTGAGTTTTG+AGG + chr1_4:4853563-4853582 Msa0145180:intron 35.0%
!! TTTTAAGTACCAATCCATGG+TGG + chr1_4:4853725-4853744 Msa0145180:intron 35.0%
! TTTTATCATATGGTCCACCA+TGG - chr1_4:4853742-4853761 None:intergenic 35.0%
ATGGTAAACTACAGCTGAAT+TGG + chr1_4:4853859-4853878 Msa0145180:CDS 35.0%
!!! TGGAATTTTTCAGGTTGTGT+TGG + chr1_4:4854079-4854098 Msa0145180:intron 35.0%
ATAGCTGTGACATTACATAG+TGG - chr1_4:4854242-4854261 None:intergenic 35.0%
! TGATGAATGTTTCTGAACAG+TGG - chr1_4:4854414-4854433 None:intergenic 35.0%
CTTGAAGGGTTGAATTTATG+AGG - chr1_4:4854459-4854478 None:intergenic 35.0%
ATTCAACCCTTCAAGATTTG+AGG + chr1_4:4854464-4854483 Msa0145180:CDS 35.0%
!!! GGCATGAAAGTATTTGGTTT+TGG - chr1_4:4854586-4854605 None:intergenic 35.0%
!! CCAAATGGCATGAAAGTATT+TGG - chr1_4:4854592-4854611 None:intergenic 35.0%
CCAAATACTTTCATGCCATT+TGG + chr1_4:4854589-4854608 Msa0145180:CDS 35.0%
TAAACTTGACGACCAAATGA+TGG - chr1_4:4854675-4854694 None:intergenic 35.0%
ATCATTTGGTCGTCAAGTTT+AGG + chr1_4:4854674-4854693 Msa0145180:CDS 35.0%
GTATATAGTTGTCCACTCTA+AGG - chr1_4:4854964-4854983 None:intergenic 35.0%
! TTTGGTATATAGGTTGGAAG+TGG + chr1_4:4855205-4855224 Msa0145180:intron 35.0%
CATTCAAAGGCAATGGAAAT+GGG - chr1_4:4855259-4855278 None:intergenic 35.0%
!! TGAATCTTTTTCTAGCATGC+TGG - chr1_4:4855312-4855331 None:intergenic 35.0%
! ATGGGATTTTGTAGGATAGA+GGG - chr1_4:4855474-4855493 None:intergenic 35.0%
AGGCGTCCTTAAAAAAAGAT+TGG + chr1_4:4855496-4855515 Msa0145180:three_prime_UTR 35.0%
AAGATTGGAAAAGCCTCAAT+AGG + chr1_4:4855511-4855530 Msa0145180:three_prime_UTR 35.0%
AGATTGGAAAAGCCTCAATA+GGG + chr1_4:4855512-4855531 Msa0145180:three_prime_UTR 35.0%
TAAATAGAGTCAAGGGGATT+TGG + chr1_4:4855585-4855604 Msa0145180:three_prime_UTR 35.0%
AAAACTTCCTCCTGGTTCAA+TGG + chr1_4:4851443-4851462 Msa0145180:five_prime_UTR 40.0%
AAACTTCCTCCTGGTTCAAT+GGG + chr1_4:4851444-4851463 Msa0145180:five_prime_UTR 40.0%
TGAAGGGTTTGTCCTATGTA+AGG - chr1_4:4851481-4851500 None:intergenic 40.0%
! TGCTTATATTTAGGACCGGA+GGG - chr1_4:4851850-4851869 None:intergenic 40.0%
! TTGCTTATATTTAGGACCGG+AGG - chr1_4:4851849-4851868 None:intergenic 40.0%
! TTGCTTATATTTAGGACCGG+AGG + chr1_4:4851849-4851868 Msa0145180:intron 40.0%
TGGATGTAAGTGTGTGATGT+TGG + chr1_4:4852208-4852227 Msa0145180:exon 40.0%
TGGTGGAAAAACAAAGCACA+AGG - chr1_4:4852323-4852342 None:intergenic 40.0%
!!! TGTGCTTTGTTTTTCCACCA+AGG + chr1_4:4852323-4852342 Msa0145180:CDS 40.0%
TAAGCTTCCTCAAACGCAAA+TGG - chr1_4:4852355-4852374 None:intergenic 40.0%
GTTTGAGGAAGCTTATTCAG+AGG + chr1_4:4852360-4852379 Msa0145180:CDS 40.0%
!! CCAAGATTTGATGGTGGAAA+GGG - chr1_4:4852438-4852457 None:intergenic 40.0%
CCTTTCCACCATCAAATCTT+GGG + chr1_4:4852436-4852455 Msa0145180:CDS 40.0%
CTTTCCACCATCAAATCTTG+GGG + chr1_4:4852437-4852456 Msa0145180:CDS 40.0%
ATCATCACCCCAAGATTTGA+TGG - chr1_4:4852447-4852466 None:intergenic 40.0%
ATCAAATCTTGGGGTGATGA+TGG + chr1_4:4852446-4852465 Msa0145180:CDS 40.0%
!! TTTTTGGCAATCTAGAGCCA+AGG + chr1_4:4852874-4852893 Msa0145180:CDS 40.0%
TGTGTACCAGGAATTTGAGT+TGG - chr1_4:4852957-4852976 None:intergenic 40.0%
TTGAATTGGAAAGGAGAAGG+AGG + chr1_4:4853173-4853192 Msa0145180:CDS 40.0%
!!! ATTTTTGGTGGTTTCTACGG+TGG + chr1_4:4853373-4853392 Msa0145180:intron 40.0%
CTCAATTCTCTTCGTCTTCA+TGG - chr1_4:4853652-4853671 None:intergenic 40.0%
! TGTGGTAATGCTTGCTTTGT+AGG + chr1_4:4853806-4853825 Msa0145180:intron 40.0%
TGAGCAGAAGACAATTCACA+TGG + chr1_4:4853830-4853849 Msa0145180:CDS 40.0%
TCAGCTACTGCTTCTCTAAA+TGG - chr1_4:4854137-4854156 None:intergenic 40.0%
GTAGCTGATGTAGAGTACAA+AGG + chr1_4:4854149-4854168 Msa0145180:CDS 40.0%
CAGGATTCCTAATCCCAAAA+GGG + chr1_4:4854376-4854395 Msa0145180:intron 40.0%
!! TGAGGCTCTGGAAAAAATTC+AGG - chr1_4:4854441-4854460 None:intergenic 40.0%
! ACTTTCATGCCATTTGGTAG+TGG + chr1_4:4854595-4854614 Msa0145180:CDS 40.0%
! GTATATAGGTTGGAAGTGGT+AGG + chr1_4:4855209-4855228 Msa0145180:intron 40.0%
TCACACTGTGGGATTCAATA+TGG + chr1_4:4855233-4855252 Msa0145180:CDS 40.0%
CCATTCAAAGGCAATGGAAA+TGG - chr1_4:4855260-4855279 None:intergenic 40.0%
CCATTTCCATTGCCTTTGAA+TGG + chr1_4:4855257-4855276 Msa0145180:CDS 40.0%
! TGGGATTTTGTAGGATAGAG+GGG - chr1_4:4855473-4855492 None:intergenic 40.0%
! CATGGGATTTTGTAGGATAG+AGG - chr1_4:4855475-4855494 None:intergenic 40.0%
TATCCTACAAAATCCCATGC+AGG + chr1_4:4855476-4855495 Msa0145180:three_prime_UTR 40.0%
!!! TTTTTTAAGGACGCCTGCAT+GGG - chr1_4:4855492-4855511 None:intergenic 40.0%
!!! TTTTTTTAAGGACGCCTGCA+TGG - chr1_4:4855493-4855512 None:intergenic 40.0%
GATTGGAAAAGCCTCAATAG+GGG + chr1_4:4855513-4855532 Msa0145180:three_prime_UTR 40.0%
GAAAGATACATCCCCTATTG+AGG - chr1_4:4855527-4855546 None:intergenic 40.0%
ACAAGTGCAAAACTTCCTCC+TGG + chr1_4:4851435-4851454 Msa0145180:five_prime_UTR 45.0%
AACTTCCTCCTGGTTCAATG+GGG + chr1_4:4851445-4851464 Msa0145180:five_prime_UTR 45.0%
GTCTTGGGAGTAGAGTTGAA+GGG - chr1_4:4851497-4851516 None:intergenic 45.0%
TGATGAGAGAAACATGGAGG+CGG - chr1_4:4851580-4851599 None:intergenic 45.0%
TGTATGTGGTTTACTCCCTC+CGG + chr1_4:4851717-4851736 Msa0145180:intron 45.0%
GGTCGATTGTAGACGATATG+AGG + chr1_4:4852047-4852066 Msa0145180:intron 45.0%
AACACAAAACGTGCAGCTTC+AGG - chr1_4:4852239-4852258 None:intergenic 45.0%
! TGAAGCTGCACGTTTTGTGT+TGG + chr1_4:4852238-4852257 Msa0145180:CDS 45.0%
AACGCAAATGGTACTCACCT+TGG - chr1_4:4852343-4852362 None:intergenic 45.0%
GTGAGTACCATTTGCGTTTG+AGG + chr1_4:4852345-4852364 Msa0145180:CDS 45.0%
CAAGTTGCGAAGTGAATCGA+GGG - chr1_4:4852393-4852412 None:intergenic 45.0%
AGGGCTAAGGCTTCAATTTC+AGG - chr1_4:4852419-4852438 None:intergenic 45.0%
!! TTTGATGGTGGAAAGGGCTA+AGG - chr1_4:4852432-4852451 None:intergenic 45.0%
CCCTTTCCACCATCAAATCT+TGG + chr1_4:4852435-4852454 Msa0145180:CDS 45.0%
!! CCCAAGATTTGATGGTGGAA+AGG - chr1_4:4852439-4852458 None:intergenic 45.0%
ATCACCCCAAGATTTGATGG+TGG - chr1_4:4852444-4852463 None:intergenic 45.0%
AATTGCGGCTGTAGTCACAT+TGG + chr1_4:4852570-4852589 Msa0145180:intron 45.0%
TGGAAGTGGAATGTGATGTG+TGG + chr1_4:4852771-4852790 Msa0145180:intron 45.0%
! CAATCTAGAGCCAAGGTTGA+GGG + chr1_4:4852881-4852900 Msa0145180:CDS 45.0%
!! TTTAGCTCTTCCCTCAACCT+TGG - chr1_4:4852894-4852913 None:intergenic 45.0%
CACAGCTACTGTCATGACAT+GGG + chr1_4:4853262-4853281 Msa0145180:CDS 45.0%
!! CTACGGTGGATTGCTTTGAT+AGG + chr1_4:4853387-4853406 Msa0145180:intron 45.0%
TCATATGGTCCACCATGGAT+TGG - chr1_4:4853737-4853756 None:intergenic 45.0%
!! TTAGTGTCGGCATTTATGCG+CGG + chr1_4:4853976-4853995 Msa0145180:intron 45.0%
!!! CCTTTTGGGATTAGGAATCC+TGG - chr1_4:4854378-4854397 None:intergenic 45.0%
CCAGGATTCCTAATCCCAAA+AGG + chr1_4:4854375-4854394 Msa0145180:intron 45.0%
GATTCCTAATCCCAAAAGGG+TGG + chr1_4:4854379-4854398 Msa0145180:CDS 45.0%
!!! CTTTCCACCCTTTTGGGATT+AGG - chr1_4:4854386-4854405 None:intergenic 45.0%
! GCATTGCTTTCCACCCTTTT+GGG - chr1_4:4854392-4854411 None:intergenic 45.0%
GGGTTGAATTTATGAGGCTC+TGG - chr1_4:4854453-4854472 None:intergenic 45.0%
GCATGTACTCCACTACCAAA+TGG - chr1_4:4854607-4854626 None:intergenic 45.0%
AAGTGGTAGGATCACACTGT+GGG + chr1_4:4855222-4855241 Msa0145180:CDS 45.0%
! GGATTTTGTAGGATAGAGGG+GGG - chr1_4:4855471-4855490 None:intergenic 45.0%
! GGGATTTTGTAGGATAGAGG+GGG - chr1_4:4855472-4855491 None:intergenic 45.0%
!! AATTTACTTATATTAAAAAA+CGG - chr1_4:4851669-4851688 None:intergenic 5.0%
!!! GTTATTAATATATTAATTTT+AGG + chr1_4:4852156-4852175 Msa0145180:intron 5.0%
GGTCTTGGGAGTAGAGTTGA+AGG - chr1_4:4851498-4851517 None:intergenic 50.0%
GCAAATGGTACTCACCTTGG+TGG - chr1_4:4852340-4852359 None:intergenic 50.0%
CCAAGTTGCGAAGTGAATCG+AGG - chr1_4:4852394-4852413 None:intergenic 50.0%
CCTCGATTCACTTCGCAACT+TGG + chr1_4:4852391-4852410 Msa0145180:CDS 50.0%
! GCAATCTAGAGCCAAGGTTG+AGG + chr1_4:4852880-4852899 Msa0145180:CDS 50.0%
GCGAAGGCAAGAGAGAAACT+TGG + chr1_4:4853071-4853090 Msa0145180:intron 50.0%
!! TGGAGTGCTTTTTGCTGCTC+AGG + chr1_4:4853235-4853254 Msa0145180:CDS 50.0%
CCATGTCATGACAGTAGCTG+TGG - chr1_4:4853264-4853283 None:intergenic 50.0%
CCACAGCTACTGTCATGACA+TGG + chr1_4:4853261-4853280 Msa0145180:CDS 50.0%
!! CGGTGGATTGCTTTGATAGG+TGG + chr1_4:4853390-4853409 Msa0145180:intron 50.0%
! GGCATTGCTTTCCACCCTTT+TGG - chr1_4:4854393-4854412 None:intergenic 50.0%
AGTGGAGTACATGCTTGTCC+TGG + chr1_4:4854613-4854632 Msa0145180:CDS 50.0%
AGCTTAGCAAGCTCATTGCC+AGG - chr1_4:4854634-4854653 None:intergenic 50.0%
!! TGGCAATGAGCTTGCTAAGC+TGG + chr1_4:4854633-4854652 Msa0145180:CDS 50.0%
GAAGTGGTAGGATCACACTG+TGG + chr1_4:4855221-4855240 Msa0145180:CDS 50.0%
GGGAGTCCATTCAAAGGCAA+TGG - chr1_4:4855266-4855285 None:intergenic 50.0%
ATTCTCTCCAACACCTGGCT+GGG - chr1_4:4855286-4855305 None:intergenic 50.0%
GGTAGATTCTCTCCAACACC+TGG - chr1_4:4855291-4855310 None:intergenic 50.0%
! ACGCCTGCATGGGATTTTGT+AGG - chr1_4:4855482-4855501 None:intergenic 50.0%
TTCCTCCTGGTTCAATGGGG+TGG + chr1_4:4851448-4851467 Msa0145180:five_prime_UTR 55.0%
TCCTCCTGGTTCAATGGGGT+GGG + chr1_4:4851449-4851468 Msa0145180:five_prime_UTR 55.0%
GAGGCGGAGTGGAACTAGAT+AGG - chr1_4:4851564-4851583 None:intergenic 55.0%
AGAGAAACATGGAGGCGGAG+TGG - chr1_4:4851575-4851594 None:intergenic 55.0%
CTGGCTGGGAGTCCATTCAA+AGG - chr1_4:4855272-4855291 None:intergenic 55.0%
! CTTTGAATGGACTCCCAGCC+AGG + chr1_4:4855270-4855289 Msa0145180:CDS 55.0%
GATTCTCTCCAACACCTGGC+TGG - chr1_4:4855287-4855306 None:intergenic 55.0%
TCCTGGTTCAATGGGGTGGG+CGG + chr1_4:4851452-4851471 Msa0145180:five_prime_UTR 60.0%
! GTGTCGGCATTTATGCGCGG+AGG + chr1_4:4853979-4853998 Msa0145180:intron 60.0%
ATGGACTCCCAGCCAGGTGT+TGG + chr1_4:4855276-4855295 Msa0145180:CDS 60.0%
GCCCACCCCATTGAACCAGG+AGG - chr1_4:4851453-4851472 None:intergenic 65.0%
ACCGCCCACCCCATTGAACC+AGG - chr1_4:4851456-4851475 None:intergenic 65.0%
TGGTTCAATGGGGTGGGCGG+TGG + chr1_4:4851455-4851474 Msa0145180:five_prime_UTR 65.0%
! GGTGGGCGGTGGCCTTACAT+AGG + chr1_4:4851466-4851485 Msa0145180:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 4851254 4855608 4851254 ID=Msa0145180;Name=Msa0145180
chr1_4 mRNA 4851254 4855608 4851254 ID=Msa0145180-mRNA-1;Parent=Msa0145180;Name=Msa0145180-mRNA-1;_AED=0.15;_eAED=0.15;_QI=341|1|1|1|0.87|0.88|9|262|401
chr1_4 exon 4851254 4851548 4851254 ID=Msa0145180-mRNA-1:exon:2025;Parent=Msa0145180-mRNA-1
chr1_4 exon 4852178 4852502 4852178 ID=Msa0145180-mRNA-1:exon:2026;Parent=Msa0145180-mRNA-1
chr1_4 exon 4852846 4852995 4852846 ID=Msa0145180-mRNA-1:exon:2027;Parent=Msa0145180-mRNA-1
chr1_4 exon 4853077 4853331 4853077 ID=Msa0145180-mRNA-1:exon:2028;Parent=Msa0145180-mRNA-1
chr1_4 exon 4853828 4853914 4853828 ID=Msa0145180-mRNA-1:exon:2029;Parent=Msa0145180-mRNA-1
chr1_4 exon 4854092 4854170 4854092 ID=Msa0145180-mRNA-1:exon:2030;Parent=Msa0145180-mRNA-1
chr1_4 exon 4854379 4854485 4854379 ID=Msa0145180-mRNA-1:exon:2031;Parent=Msa0145180-mRNA-1
chr1_4 exon 4854577 4854695 4854577 ID=Msa0145180-mRNA-1:exon:2032;Parent=Msa0145180-mRNA-1
chr1_4 exon 4855217 4855608 4855217 ID=Msa0145180-mRNA-1:exon:2033;Parent=Msa0145180-mRNA-1
chr1_4 five_prime_UTR 4851254 4851548 4851254 ID=Msa0145180-mRNA-1:five_prime_utr;Parent=Msa0145180-mRNA-1
chr1_4 five_prime_UTR 4852178 4852223 4852178 ID=Msa0145180-mRNA-1:five_prime_utr;Parent=Msa0145180-mRNA-1
chr1_4 CDS 4852224 4852502 4852224 ID=Msa0145180-mRNA-1:cds;Parent=Msa0145180-mRNA-1
chr1_4 CDS 4852846 4852995 4852846 ID=Msa0145180-mRNA-1:cds;Parent=Msa0145180-mRNA-1
chr1_4 CDS 4853077 4853331 4853077 ID=Msa0145180-mRNA-1:cds;Parent=Msa0145180-mRNA-1
chr1_4 CDS 4853828 4853914 4853828 ID=Msa0145180-mRNA-1:cds;Parent=Msa0145180-mRNA-1
chr1_4 CDS 4854092 4854170 4854092 ID=Msa0145180-mRNA-1:cds;Parent=Msa0145180-mRNA-1
chr1_4 CDS 4854379 4854485 4854379 ID=Msa0145180-mRNA-1:cds;Parent=Msa0145180-mRNA-1
chr1_4 CDS 4854577 4854695 4854577 ID=Msa0145180-mRNA-1:cds;Parent=Msa0145180-mRNA-1
chr1_4 CDS 4855217 4855346 4855217 ID=Msa0145180-mRNA-1:cds;Parent=Msa0145180-mRNA-1
chr1_4 three_prime_UTR 4855347 4855608 4855347 ID=Msa0145180-mRNA-1:three_prime_utr;Parent=Msa0145180-mRNA-1
Gene Sequence

>Msa0145180

ATGTTGGCAAGTCCTGAAGCTGCACGTTTTGTGTTGGTGACACAATCTCACTTATTTAAACCAACATATCCTAAAAGCAAAGAACGTTTGATTGGTCCTTGTGCTTTGTTTTTCCACCAAGGTGAGTACCATTTGCGTTTGAGGAAGCTTATTCAGAGGTCTCTCTCCCTCGATTCACTTCGCAACTTGGTTCCTGAAATTGAAGCCTTAGCCCTTTCCACCATCAAATCTTGGGGTGATGATGGATGCATAATTAACACTTTTAAGGAAATGAAAAAATTTTCTTTTGAAGTTGGTATTCTCAAAGTTTTTGGCAATCTAGAGCCAAGGTTGAGGGAAGAGCTAAAGAAGAATTATTGGATTGTTGACAATGGTTACAATTCATTTCCAACTCAAATTCCTGGTACACAATACAAAAAAGCACTCTTGGCAAGAGAGAAACTTGGAAGTATTTTGAAGGAAATAATTAGTGAGAGGAAGGAGAAGAAGTTGCTTGAAAGTGAAAGAGATCTTTTGAGCTGTTTCTTGAATTGGAAAGGAGAAGGAGGAGAAATATTATCTGATGATGAAATTGGAGATAACATTATTGGAGTGCTTTTTGCTGCTCAGGATACCACAGCTACTGTCATGACATGGGTGATCAAGTACTTGCATGATGAACCGAAACTTCTCGAATGTGTAAAGGCTGAGCAGAAGACAATTCACATGGAAAATGATGGTAAACTACAGCTGAATTGGAATCAGACTAGAAACATGCCAATTACCTATAAGGTTGTGTTGGAGAGCATGAGAATAGCAAGTGTTATATCATTTCCATTTAGAGAAGCAGTAGCTGATGTAGAGTACAAAGGATTCCTAATCCCAAAAGGGTGGAAAGCAATGCCACTGTTCAGAAACATTCATCATAATCCTGAATTTTTTCCAGAGCCTCATAAATTCAACCCTTCAAGATTTGAGGTTTCACCAAAACCAAATACTTTCATGCCATTTGGTAGTGGAGTACATGCTTGTCCTGGCAATGAGCTTGCTAAGCTGGAGACCCTTATTATGATCCATCATTTGGTCGTCAAGTTTAGGTTGGAAGTGGTAGGATCACACTGTGGGATTCAATATGGCCCATTTCCATTGCCTTTGAATGGACTCCCAGCCAGGTGTTGGAGAGAATCTACCAGCATGCTAGAAAAAGATTCATTGGGGAAGAAATGA
Protein sequence

>Msa0145180

MLASPEAARFVLVTQSHLFKPTYPKSKERLIGPCALFFHQGEYHLRLRKLIQRSLSLDSLRNLVPEIEALALSTIKSWGDDGCIINTFKEMKKFSFEVGILKVFGNLEPRLREELKKNYWIVDNGYNSFPTQIPGTQYKKALLAREKLGSILKEIISERKEKKLLESERDLLSCFLNWKGEGGEILSDDEIGDNIIGVLFAAQDTTATVMTWVIKYLHDEPKLLECVKAEQKTIHMENDGKLQLNWNQTRNMPITYKVVLESMRIASVISFPFREAVADVEYKGFLIPKGWKAMPLFRNIHHNPEFFPEPHKFNPSRFEVSPKPNTFMPFGSGVHACPGNELAKLETLIMIHHLVVKFRLEVVGSHCGIQYGPFPLPLNGLPARCWRESTSMLEKDSLGKK*