Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835920 | XP_003611669.1 | 99.451 | 182 | 1 | 0 | 1 | 182 | 1 | 182 | 1.08e-130 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835920 | sp|P51823|ARF2_ORYSJ | 88.333 | 180 | 21 | 0 | 1 | 180 | 1 | 180 | 1.50e-120 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835920 | G7K590 | 99.451 | 182 | 1 | 0 | 1 | 182 | 1 | 182 | 5.17e-131 | 374 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa0835920 | 0.817674 | 2.916758e-52 | -8.615850e-47 |
| Msa0011720 | Msa0835920 | 0.831425 | 1.681735e-55 | -8.615850e-47 |
| Msa0044710 | Msa0835920 | 0.807553 | 4.777406e-50 | -8.615850e-47 |
| Msa0050730 | Msa0835920 | 0.816157 | 6.390323e-52 | -8.615850e-47 |
| Msa0050760 | Msa0835920 | 0.834322 | 3.205897e-56 | -8.615850e-47 |
| Msa0060600 | Msa0835920 | 0.817662 | 2.935821e-52 | -8.615850e-47 |
| Msa0071550 | Msa0835920 | 0.814650 | 1.382595e-51 | -8.615850e-47 |
| Msa0071910 | Msa0835920 | -0.822761 | 1.992082e-53 | -8.615850e-47 |
| Msa0077390 | Msa0835920 | 0.834045 | 3.760677e-56 | -8.615850e-47 |
| Msa0094100 | Msa0835920 | 0.809256 | 2.069766e-50 | -8.615850e-47 |
| Msa0105340 | Msa0835920 | 0.835516 | 1.603628e-56 | -8.615850e-47 |
| Msa0617370 | Msa0835920 | 0.824133 | 9.519501e-54 | -8.615850e-47 |
| Msa0640380 | Msa0835920 | 0.862238 | 5.840105e-64 | -8.615850e-47 |
| Msa0647000 | Msa0835920 | 0.804562 | 2.035043e-49 | -8.615850e-47 |
| Msa0647830 | Msa0835920 | 0.800334 | 1.513131e-48 | -8.615850e-47 |
| Msa0649970 | Msa0835920 | 0.810757 | 9.833240e-51 | -8.615850e-47 |
| Msa0651190 | Msa0835920 | 0.806650 | 7.419900e-50 | -8.615850e-47 |
| Msa0667890 | Msa0835920 | 0.803806 | 2.923644e-49 | -8.615850e-47 |
| Msa0678820 | Msa0835920 | 0.862175 | 6.104343e-64 | -8.615850e-47 |
| Msa0690440 | Msa0835920 | 0.809707 | 1.656168e-50 | -8.615850e-47 |
| Msa0697140 | Msa0835920 | 0.827552 | 1.468631e-54 | -8.615850e-47 |
| Msa0700070 | Msa0835920 | 0.802310 | 5.960337e-49 | -8.615850e-47 |
| Msa0714340 | Msa0835920 | 0.802874 | 4.560987e-49 | -8.615850e-47 |
| Msa0714380 | Msa0835920 | 0.802375 | 5.780777e-49 | -8.615850e-47 |
| Msa0714600 | Msa0835920 | 0.814845 | 1.251851e-51 | -8.615850e-47 |
| Msa0715310 | Msa0835920 | 0.812400 | 4.322020e-51 | -8.615850e-47 |
| Msa0722930 | Msa0835920 | 0.855638 | 5.516360e-62 | -8.615850e-47 |
| Msa0723140 | Msa0835920 | 0.856921 | 2.320159e-62 | -8.615850e-47 |
| Msa0726610 | Msa0835920 | 0.807116 | 5.913955e-50 | -8.615850e-47 |
| Msa0755740 | Msa0835920 | 0.843928 | 1.036333e-58 | -8.615850e-47 |
| Msa0756310 | Msa0835920 | 0.816506 | 5.338162e-52 | -8.615850e-47 |
| Msa0773610 | Msa0835920 | 0.805564 | 1.256324e-49 | -8.615850e-47 |
| Msa0792510 | Msa0835920 | 0.813928 | 1.996246e-51 | -8.615850e-47 |
| Msa0806210 | Msa0835920 | 0.822425 | 2.385589e-53 | -8.615850e-47 |
| Msa0812760 | Msa0835920 | 0.831794 | 1.364065e-55 | -8.615850e-47 |
| Msa0828570 | Msa0835920 | 0.808634 | 2.813186e-50 | -8.615850e-47 |
| Msa0835730 | Msa0835920 | 0.810241 | 1.270909e-50 | -8.615850e-47 |
| Msa0835920 | Msa0839330 | 0.814206 | 1.734044e-51 | -8.615850e-47 |
| Msa0835920 | Msa0843280 | 0.862384 | 5.264746e-64 | -8.615850e-47 |
| Msa0835920 | Msa0846810 | 0.835629 | 1.501371e-56 | -8.615850e-47 |
| Msa0835920 | Msa0847200 | 0.837794 | 4.212477e-57 | -8.615850e-47 |
| Msa0835920 | Msa0870330 | 0.817860 | 2.649292e-52 | -8.615850e-47 |
| Msa0835920 | Msa0896210 | 0.839018 | 2.036738e-57 | -8.615850e-47 |
| Msa0835920 | Msa0896220 | 0.811768 | 5.934132e-51 | -8.615850e-47 |
| Msa0835920 | Msa0900200 | 0.822192 | 2.701713e-53 | -8.615850e-47 |
| Msa0835920 | Msa0902980 | 0.811526 | 6.699910e-51 | -8.615850e-47 |
| Msa0835920 | Msa0903730 | 0.823282 | 1.506630e-53 | -8.615850e-47 |
| Msa0835920 | Msa0910980 | -0.810572 | 1.078576e-50 | -8.615850e-47 |
| Msa0835920 | Msa0927670 | 0.804940 | 1.697398e-49 | -8.615850e-47 |
| Msa0835920 | Msa0944770 | 0.811857 | 5.676336e-51 | -8.615850e-47 |
| Msa0835920 | Msa0951720 | 0.844073 | 9.472089e-59 | -8.615850e-47 |
| Msa0835920 | Msa0961420 | -0.814974 | 1.171978e-51 | -8.615850e-47 |
| Msa0835920 | Msa0964680 | 0.807483 | 4.943734e-50 | -8.615850e-47 |
| Msa0835920 | Msa0965520 | 0.814523 | 1.475244e-51 | -8.615850e-47 |
| Msa0835920 | Msa0980440 | 0.800503 | 1.398175e-48 | -8.615850e-47 |
| Msa0835920 | Msa0988500 | 0.845909 | 3.025253e-59 | -8.615850e-47 |
| Msa0835920 | Msa0999040 | 0.807175 | 5.747541e-50 | -8.615850e-47 |
| Msa0835920 | Msa1008490 | 0.810858 | 9.353933e-51 | -8.615850e-47 |
| Msa0835920 | Msa1009000 | 0.803720 | 3.046867e-49 | -8.615850e-47 |
| Msa0835920 | Msa1036390 | 0.837512 | 4.976804e-57 | -8.615850e-47 |
| Msa0835920 | Msa1046610 | 0.803273 | 3.772156e-49 | -8.615850e-47 |
| Msa0835920 | Msa1054410 | 0.809766 | 1.608469e-50 | -8.615850e-47 |
| Msa0835920 | Msa1076680 | 0.836121 | 1.126496e-56 | -8.615850e-47 |
| Msa0835920 | Msa1080790 | 0.828085 | 1.093481e-54 | -8.615850e-47 |
| Msa0835920 | Msa1081600 | 0.816757 | 4.691651e-52 | -8.615850e-47 |
| Msa0835920 | Msa1083410 | 0.803230 | 3.848764e-49 | -8.615850e-47 |
| Msa0835920 | Msa1098560 | 0.813488 | 2.495108e-51 | -8.615850e-47 |
| Msa0835920 | Msa1108780 | 0.804020 | 2.639671e-49 | -8.615850e-47 |
| Msa0835920 | Msa1118930 | 0.826393 | 2.780612e-54 | -8.615850e-47 |
| Msa0835920 | Msa1131940 | -0.807663 | 4.527530e-50 | -8.615850e-47 |
| Msa0835920 | Msa1133660 | 0.804743 | 1.865426e-49 | -8.615850e-47 |
| Msa0835920 | Msa1141250 | -0.818392 | 2.008224e-52 | -8.615850e-47 |
| Msa0835920 | Msa1166370 | 0.826423 | 2.735685e-54 | -8.615850e-47 |
| Msa0835920 | Msa1182830 | 0.810546 | 1.092388e-50 | -8.615850e-47 |
| Msa0835920 | Msa1184050 | 0.833641 | 4.745885e-56 | -8.615850e-47 |
| Msa0835920 | Msa1204980 | -0.848289 | 6.738372e-60 | -8.615850e-47 |
| Msa0835920 | Msa1205010 | -0.849196 | 3.775350e-60 | -8.615850e-47 |
| Msa0835920 | Msa1208710 | 0.810989 | 8.762328e-51 | -8.615850e-47 |
| Msa0835920 | Msa1208760 | 0.822808 | 1.943492e-53 | -8.615850e-47 |
| Msa0835920 | Msa1217810 | 0.823623 | 1.253650e-53 | -8.615850e-47 |
| Msa0835920 | Msa1221200 | -0.803931 | 2.754292e-49 | -8.615850e-47 |
| Msa0835920 | Msa1228210 | 0.836614 | 8.438101e-57 | -8.615850e-47 |
| Msa0835920 | Msa1244830 | 0.839430 | 1.592478e-57 | -8.615850e-47 |
| Msa0835920 | Msa1252070 | 0.833158 | 6.263311e-56 | -8.615850e-47 |
| Msa0835920 | Msa1256540 | -0.853229 | 2.743897e-61 | -8.615850e-47 |
| Msa0835920 | Msa1257870 | -0.817639 | 2.970542e-52 | -8.615850e-47 |
| Msa0835920 | Msa1258950 | 0.812469 | 4.173429e-51 | -8.615850e-47 |
| Msa0835920 | Msa1271280 | 0.836399 | 9.575510e-57 | -8.615850e-47 |
| Msa0835920 | Msa1271300 | 0.848132 | 7.445400e-60 | -8.615850e-47 |
| Msa0835920 | Msa1279650 | 0.835345 | 1.770893e-56 | -8.615850e-47 |
| Msa0835920 | Msa1282920 | 0.805950 | 1.041979e-49 | -8.615850e-47 |
| Msa0835920 | Msa1292730 | 0.850874 | 1.280745e-60 | -8.615850e-47 |
| Msa0835920 | Msa1296960 | -0.854126 | 1.514914e-61 | -8.615850e-47 |
| Msa0835920 | Msa1297090 | 0.816626 | 5.017961e-52 | -8.615850e-47 |
| Msa0835920 | Msa1322190 | 0.820478 | 6.714350e-53 | -8.615850e-47 |
| Msa0835920 | Msa1335770 | 0.803655 | 3.142608e-49 | -8.615850e-47 |
| Msa0835920 | Msa1343820 | 0.805962 | 1.036125e-49 | -8.615850e-47 |
| Msa0835920 | Msa1347620 | 0.800267 | 1.561525e-48 | -8.615850e-47 |
| Msa0835920 | Msa1355260 | 0.808193 | 3.493503e-50 | -8.615850e-47 |
| Msa0835920 | Msa1358870 | -0.800126 | 1.668438e-48 | -8.615850e-47 |
| Msa0835920 | Msa1363890 | 0.813586 | 2.374214e-51 | -8.615850e-47 |
| Msa0835920 | Msa1365040 | -0.810309 | 1.228677e-50 | -8.615850e-47 |
| Msa0835920 | Msa1373950 | 0.817591 | 3.045610e-52 | -8.615850e-47 |
| Msa0835920 | Msa1386520 | 0.803747 | 3.007755e-49 | -8.615850e-47 |
| Msa0835920 | Msa1418580 | 0.802521 | 5.394412e-49 | -8.615850e-47 |
| Msa0835920 | Msa1423450 | 0.819958 | 8.835964e-53 | -8.615850e-47 |
| Msa0835920 | Msa1440600 | 0.834381 | 3.097110e-56 | -8.615850e-47 |
| Msa0835920 | Msa1444060 | -0.818237 | 2.177241e-52 | -8.615850e-47 |
| Msa0835920 | Msa1450020 | 0.813588 | 2.372466e-51 | -8.615850e-47 |
| Msa0835920 | Msa1453710 | 0.824077 | 9.811637e-54 | -8.615850e-47 |
| Msa0835920 | Msa1457670 | -0.822448 | 2.356537e-53 | -8.615850e-47 |
| Msa0835920 | Msa1461250 | -0.800225 | 1.592435e-48 | -8.615850e-47 |
| Msa0140910 | Msa0835920 | 0.840635 | 7.724102e-58 | -8.615850e-47 |
| Msa0151690 | Msa0835920 | 0.827888 | 1.219558e-54 | -8.615850e-47 |
| Msa0160520 | Msa0835920 | 0.814957 | 1.182126e-51 | -8.615850e-47 |
| Msa0164360 | Msa0835920 | 0.832421 | 9.544248e-56 | -8.615850e-47 |
| Msa0165430 | Msa0835920 | 0.808668 | 2.765956e-50 | -8.615850e-47 |
| Msa0178350 | Msa0835920 | 0.812681 | 3.751220e-51 | -8.615850e-47 |
| Msa0185480 | Msa0835920 | 0.829656 | 4.556910e-55 | -8.615850e-47 |
| Msa0185640 | Msa0835920 | -0.857197 | 1.923629e-62 | -8.615850e-47 |
| Msa0198440 | Msa0835920 | 0.800480 | 1.413303e-48 | -8.615850e-47 |
| Msa0203640 | Msa0835920 | 0.809056 | 2.284878e-50 | -8.615850e-47 |
| Msa0211010 | Msa0835920 | 0.827196 | 1.788291e-54 | -8.615850e-47 |
| Msa0217400 | Msa0835920 | 0.810404 | 1.172064e-50 | -8.615850e-47 |
| Msa0371420 | Msa0835920 | -0.809632 | 1.719471e-50 | -8.615850e-47 |
| Msa0371540 | Msa0835920 | 0.831807 | 1.353976e-55 | -8.615850e-47 |
| Msa0411000 | Msa0835920 | 0.850280 | 1.880013e-60 | -8.615850e-47 |
| Msa0414070 | Msa0835920 | 0.819460 | 1.148166e-52 | -8.615850e-47 |
| Msa0418000 | Msa0835920 | 0.805101 | 1.570357e-49 | -8.615850e-47 |
| Msa0419620 | Msa0835920 | -0.819773 | 9.741243e-53 | -8.615850e-47 |
| Msa0419970 | Msa0835920 | 0.846503 | 2.085697e-59 | -8.615850e-47 |
| Msa0419990 | Msa0835920 | 0.803739 | 3.018692e-49 | -8.615850e-47 |
| Msa0437710 | Msa0835920 | 0.800994 | 1.109704e-48 | -8.615850e-47 |
| Msa0449760 | Msa0835920 | 0.832644 | 8.403222e-56 | -8.615850e-47 |
| Msa0455230 | Msa0835920 | 0.864368 | 1.278664e-64 | -8.615850e-47 |
| Msa0457370 | Msa0835920 | 0.809038 | 2.305668e-50 | -8.615850e-47 |
| Msa0462590 | Msa0835920 | 0.806512 | 7.936908e-50 | -8.615850e-47 |
| Msa0465680 | Msa0835920 | -0.841068 | 5.946121e-58 | -8.615850e-47 |
| Msa0466060 | Msa0835920 | 0.843056 | 1.771217e-58 | -8.615850e-47 |
| Msa0240780 | Msa0835920 | 0.815800 | 7.678793e-52 | -8.615850e-47 |
| Msa0251670 | Msa0835920 | 0.808579 | 2.889153e-50 | -8.615850e-47 |
| Msa0257250 | Msa0835920 | 0.838103 | 3.508178e-57 | -8.615850e-47 |
| Msa0258760 | Msa0835920 | 0.808568 | 2.904876e-50 | -8.615850e-47 |
| Msa0265820 | Msa0835920 | 0.812453 | 4.206961e-51 | -8.615850e-47 |
| Msa0270270 | Msa0835920 | 0.805099 | 1.571904e-49 | -8.615850e-47 |
| Msa0270440 | Msa0835920 | -0.810875 | 9.272052e-51 | -8.615850e-47 |
| Msa0278670 | Msa0835920 | 0.803062 | 4.171140e-49 | -8.615850e-47 |
| Msa0282170 | Msa0835920 | 0.805452 | 1.325930e-49 | -8.615850e-47 |
| Msa0290650 | Msa0835920 | 0.833955 | 3.961753e-56 | -8.615850e-47 |
| Msa0296560 | Msa0835920 | 0.803656 | 3.141115e-49 | -8.615850e-47 |
| Msa0309080 | Msa0835920 | -0.805373 | 1.377740e-49 | -8.615850e-47 |
| Msa0309550 | Msa0835920 | 0.816410 | 5.610337e-52 | -8.615850e-47 |
| Msa0323630 | Msa0835920 | 0.801279 | 9.703291e-49 | -8.615850e-47 |
| Msa0326670 | Msa0835920 | 0.815812 | 7.630292e-52 | -8.615850e-47 |
| Msa0342340 | Msa0835920 | -0.852935 | 3.329797e-61 | -8.615850e-47 |
| Msa0356960 | Msa0835920 | 0.823660 | 1.229297e-53 | -8.615850e-47 |
| Msa0362740 | Msa0835920 | 0.817668 | 2.926714e-52 | -8.615850e-47 |
| Msa0363460 | Msa0835920 | 0.860529 | 1.939195e-63 | -8.615850e-47 |
| Msa0505660 | Msa0835920 | 0.807779 | 4.278300e-50 | -8.615850e-47 |
| Msa0511720 | Msa0835920 | -0.814448 | 1.533160e-51 | -8.615850e-47 |
| Msa0517340 | Msa0835920 | 0.839025 | 2.028030e-57 | -8.615850e-47 |
| Msa0524890 | Msa0835920 | -0.819499 | 1.124700e-52 | -8.615850e-47 |
| Msa0528970 | Msa0835920 | 0.835725 | 1.419768e-56 | -8.615850e-47 |
| Msa0533050 | Msa0835920 | 0.805731 | 1.158528e-49 | -8.615850e-47 |
| Msa0536220 | Msa0835920 | 0.812387 | 4.350237e-51 | -8.615850e-47 |
| Msa0540070 | Msa0835920 | 0.856212 | 3.746446e-62 | -8.615850e-47 |
| Msa0543900 | Msa0835920 | 0.868207 | 7.748984e-66 | -8.615850e-47 |
| Msa0549740 | Msa0835920 | 0.805481 | 1.307524e-49 | -8.615850e-47 |
| Msa0557680 | Msa0835920 | 0.805714 | 1.168272e-49 | -8.615850e-47 |
| Msa0563140 | Msa0835920 | 0.815368 | 9.580222e-52 | -8.615850e-47 |
| Msa0564510 | Msa0835920 | 0.827165 | 1.818773e-54 | -8.615850e-47 |
| Msa0576990 | Msa0835920 | -0.821724 | 3.466833e-53 | -8.615850e-47 |
| Msa0578970 | Msa0835920 | 0.802185 | 6.326394e-49 | -8.615850e-47 |
| Msa0584070 | Msa0835920 | 0.809630 | 1.720747e-50 | -8.615850e-47 |
| Msa0591780 | Msa0835920 | 0.817968 | 2.503806e-52 | -8.615850e-47 |
| Msa0599770 | Msa0835920 | 0.871416 | 6.951806e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835920 | MtrunA17_Chr5g0401761 | 99.451 | 182 | 1 | 0 | 1 | 182 | 1 | 182 | 9.95e-135 | 374 |
| Msa0835920 | MtrunA17_Chr5g0413451 | 87.778 | 180 | 22 | 0 | 1 | 180 | 1 | 180 | 4.36e-121 | 339 |
| Msa0835920 | MtrunA17_Chr5g0413441 | 87.778 | 180 | 22 | 0 | 1 | 180 | 1 | 180 | 4.36e-121 | 339 |
| Msa0835920 | MtrunA17_Chr1g0194261 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 1.59e-120 | 338 |
| Msa0835920 | MtrunA17_Chr6g0450081 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 2.64e-120 | 337 |
| Msa0835920 | MtrunA17_Chr7g0270301 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 6.56e-120 | 336 |
| Msa0835920 | MtrunA17_Chr5g0395631 | 59.887 | 177 | 71 | 0 | 1 | 177 | 1 | 177 | 1.60e-80 | 237 |
| Msa0835920 | MtrunA17_Chr4g0039591 | 58.757 | 177 | 73 | 0 | 1 | 177 | 1 | 177 | 1.33e-77 | 230 |
| Msa0835920 | MtrunA17_Chr4g0072861 | 56.983 | 179 | 77 | 0 | 1 | 179 | 1 | 179 | 4.88e-77 | 228 |
| Msa0835920 | MtrunA17_Chr5g0395641 | 53.297 | 182 | 83 | 1 | 1 | 180 | 1 | 182 | 1.59e-72 | 217 |
| Msa0835920 | MtrunA17_Chr1g0188111 | 50.556 | 180 | 89 | 0 | 1 | 180 | 1 | 180 | 6.15e-66 | 200 |
| Msa0835920 | MtrunA17_Chr8g0373271 | 47.590 | 166 | 84 | 3 | 18 | 181 | 17 | 181 | 2.68e-49 | 157 |
| Msa0835920 | MtrunA17_Chr2g0287721 | 34.682 | 173 | 102 | 2 | 10 | 173 | 10 | 180 | 3.17e-36 | 125 |
| Msa0835920 | MtrunA17_Chr5g0434561 | 34.337 | 166 | 108 | 1 | 9 | 173 | 11 | 176 | 1.15e-30 | 110 |
| Msa0835920 | MtrunA17_Chr5g0401071 | 33.735 | 166 | 109 | 1 | 9 | 173 | 11 | 176 | 1.05e-29 | 107 |
| Msa0835920 | MtrunA17_Chr5g0395651 | 56.962 | 79 | 32 | 1 | 1 | 77 | 1 | 79 | 6.55e-27 | 97.4 |
| Msa0835920 | MtrunA17_Chr4g0012371 | 33.121 | 157 | 104 | 1 | 18 | 173 | 1 | 157 | 1.74e-26 | 99.0 |
| Msa0835920 | MtrunA17_Chr2g0294701 | 32.768 | 177 | 103 | 2 | 15 | 177 | 18 | 192 | 6.94e-26 | 98.2 |
| Msa0835920 | MtrunA17_Chr7g0271761 | 32.203 | 177 | 104 | 2 | 15 | 177 | 18 | 192 | 1.60e-25 | 97.4 |
| Msa0835920 | MtrunA17_Chr4g0068171 | 32.203 | 177 | 104 | 2 | 15 | 177 | 18 | 192 | 5.83e-24 | 93.2 |
| Msa0835920 | MtrunA17_Chr5g0395671 | 51.020 | 49 | 24 | 0 | 132 | 180 | 44 | 92 | 7.02e-14 | 64.3 |
| Msa0835920 | MtrunA17_Chr1g0180291 | 35.294 | 85 | 51 | 1 | 18 | 98 | 15 | 99 | 1.71e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835920 | AT3G62290.3 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 3.23e-120 | 337 |
| Msa0835920 | AT3G62290.1 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 3.23e-120 | 337 |
| Msa0835920 | AT3G62290.2 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 3.23e-120 | 337 |
| Msa0835920 | AT1G10630.1 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 8.29e-120 | 336 |
| Msa0835920 | AT1G10630.2 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 8.29e-120 | 336 |
| Msa0835920 | AT5G14670.1 | 86.188 | 181 | 25 | 0 | 1 | 181 | 1 | 181 | 1.77e-119 | 336 |
| Msa0835920 | AT1G23490.1 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0835920 | AT1G70490.2 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0835920 | AT1G70490.7 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0835920 | AT1G70490.4 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0835920 | AT1G70490.3 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0835920 | AT1G70490.1 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0835920 | AT1G70490.6 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0835920 | AT1G70490.5 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0835920 | AT2G47170.2 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.68e-119 | 335 |
| Msa0835920 | AT2G47170.1 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.68e-119 | 335 |
| Msa0835920 | AT2G47170.3 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.68e-119 | 335 |
| Msa0835920 | AT5G14670.2 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.90e-119 | 335 |
| Msa0835920 | AT5G14670.3 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.90e-119 | 335 |
| Msa0835920 | AT2G15310.1 | 70.556 | 180 | 53 | 0 | 1 | 180 | 1 | 180 | 1.31e-93 | 271 |
| Msa0835920 | AT5G17060.2 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 6.77e-80 | 236 |
| Msa0835920 | AT5G17060.1 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 6.77e-80 | 236 |
| Msa0835920 | AT3G03120.1 | 59.322 | 177 | 72 | 0 | 1 | 177 | 1 | 177 | 3.06e-79 | 234 |
| Msa0835920 | AT2G24765.1 | 57.542 | 179 | 76 | 0 | 1 | 179 | 1 | 179 | 3.14e-78 | 231 |
| Msa0835920 | AT3G22950.1 | 51.667 | 180 | 87 | 0 | 1 | 180 | 1 | 180 | 4.30e-69 | 208 |
| Msa0835920 | AT3G22950.2 | 51.667 | 180 | 87 | 0 | 1 | 180 | 1 | 180 | 4.30e-69 | 208 |
| Msa0835920 | AT3G03120.2 | 61.538 | 130 | 50 | 0 | 1 | 130 | 1 | 130 | 3.59e-58 | 179 |
| Msa0835920 | AT2G24765.2 | 60.156 | 128 | 51 | 0 | 1 | 128 | 1 | 128 | 1.50e-55 | 172 |
| Msa0835920 | AT1G02430.1 | 46.774 | 186 | 89 | 4 | 1 | 176 | 1 | 186 | 4.16e-54 | 170 |
| Msa0835920 | AT1G02440.1 | 44.624 | 186 | 93 | 4 | 1 | 176 | 1 | 186 | 1.57e-53 | 169 |
| Msa0835920 | AT2G18390.1 | 47.590 | 166 | 84 | 3 | 18 | 181 | 17 | 181 | 2.59e-48 | 155 |
| Msa0835920 | AT1G02430.2 | 44.654 | 159 | 82 | 3 | 1 | 153 | 1 | 159 | 1.26e-42 | 140 |
| Msa0835920 | AT5G52210.1 | 32.955 | 176 | 111 | 1 | 5 | 173 | 5 | 180 | 2.02e-34 | 120 |
| Msa0835920 | AT5G52210.2 | 32.955 | 176 | 111 | 1 | 5 | 173 | 5 | 180 | 2.02e-34 | 120 |
| Msa0835920 | AT3G49870.1 | 34.940 | 166 | 107 | 1 | 9 | 173 | 11 | 176 | 3.99e-32 | 114 |
| Msa0835920 | AT5G67560.1 | 34.337 | 166 | 108 | 1 | 9 | 173 | 11 | 176 | 1.01e-31 | 113 |
| Msa0835920 | AT3G49870.2 | 35.032 | 157 | 101 | 1 | 18 | 173 | 1 | 157 | 6.75e-30 | 108 |
| Msa0835920 | AT5G37680.1 | 33.133 | 166 | 110 | 1 | 9 | 173 | 11 | 176 | 7.43e-30 | 108 |
| Msa0835920 | AT3G49860.1 | 34.940 | 166 | 107 | 1 | 16 | 180 | 10 | 175 | 2.01e-29 | 107 |
| Msa0835920 | AT3G62560.1 | 32.768 | 177 | 103 | 2 | 15 | 177 | 18 | 192 | 1.32e-25 | 97.8 |
| Msa0835920 | AT4G02080.1 | 32.000 | 175 | 107 | 2 | 15 | 177 | 18 | 192 | 4.61e-25 | 96.3 |
| Msa0835920 | AT1G56330.1 | 32.584 | 178 | 104 | 2 | 15 | 178 | 18 | 193 | 5.65e-25 | 96.3 |
| Msa0835920 | AT1G02440.2 | 31.818 | 154 | 69 | 2 | 1 | 153 | 1 | 119 | 1.01e-24 | 93.6 |
| Msa0835920 | AT1G09180.1 | 32.584 | 178 | 104 | 2 | 14 | 177 | 17 | 192 | 1.17e-24 | 95.5 |
| Msa0835920 | AT5G37680.2 | 33.594 | 128 | 85 | 0 | 46 | 173 | 2 | 129 | 4.16e-24 | 92.4 |
Find 42 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGAAGGTCTTGCTTAT+TGG | 0.247726 | 5_4:-9314284 | None:intergenic |
| AAAATGTCAGCTTCACTGTC+TGG | 0.376569 | 5_4:+9313744 | Msa0835920:CDS |
| TCTGCAACGCTCAAAGCATT+TGG | 0.394687 | 5_4:-9314301 | None:intergenic |
| TGTATTGTTTGCTTATATAC+TGG | 0.402519 | 5_4:+9314632 | Msa0835920:three_prime_UTR |
| AGCTTCACTGTCTGGGATGT+TGG | 0.414580 | 5_4:+9313752 | Msa0835920:CDS |
| GACTCTATGAAGGCCTTGAT+TGG | 0.421761 | 5_4:+9314520 | Msa0835920:CDS |
| CAGTCAACTTGTGCCACGTC+TGG | 0.434429 | 5_4:+9314492 | Msa0835920:CDS |
| ACAGTGATTGATATTATAGT+TGG | 0.434458 | 5_4:-9314693 | None:intergenic |
| TTGTTATGATTTATGAAAGA+AGG | 0.446024 | 5_4:-9313363 | None:intergenic |
| TGTTATGATTTATGAAAGAA+GGG | 0.456184 | 5_4:-9313362 | None:intergenic |
| TACACAAGGTCTTATCTTTG+TGG | 0.464373 | 5_4:+9314056 | Msa0835920:CDS |
| CAGACGTGGCACAAGTTGAC+TGG | 0.490705 | 5_4:-9314491 | None:intergenic |
| CATTCTATGAAGTTCATCTC+TGG | 0.495248 | 5_4:-9314112 | None:intergenic |
| TTTGGAACCTATGGTTGGTA+TGG | 0.503874 | 5_4:-9313586 | None:intergenic |
| TTTATGCAAAGAAAGAAATG+AGG | 0.508896 | 5_4:+9313487 | Msa0835920:CDS |
| GCAGAAATTACTGATAAACT+TGG | 0.510496 | 5_4:+9314319 | Msa0835920:CDS |
| ATTCACTTCGCCAGCGTCGT+TGG | 0.511745 | 5_4:+9314347 | Msa0835920:CDS |
| ATACTCTACAAACTGAAGCT+TGG | 0.516539 | 5_4:+9313549 | Msa0835920:CDS |
| AAATGTCAGCTTCACTGTCT+GGG | 0.518950 | 5_4:+9313745 | Msa0835920:CDS |
| ATGGTAGGTCTTGATGCTGC+TGG | 0.522575 | 5_4:+9313516 | Msa0835920:CDS |
| TTCACTGTCTGGGATGTTGG+AGG | 0.531178 | 5_4:+9313755 | Msa0835920:CDS |
| TGTTACTTGATAACCAATCA+AGG | 0.534396 | 5_4:-9314533 | None:intergenic |
| ATTGGCAAATACAAGTAAAG+TGG | 0.538360 | 5_4:-9314266 | None:intergenic |
| GACTATTTGGAACCTATGGT+TGG | 0.543143 | 5_4:-9313591 | None:intergenic |
| GTACACTCTTTAACAGTGAA+GGG | 0.554920 | 5_4:+9314716 | Msa0835920:three_prime_UTR |
| TGTACACTCTTTAACAGTGA+AGG | 0.568226 | 5_4:+9314715 | Msa0835920:three_prime_UTR |
| GAAAGAAATGAGGATTCTGA+TGG | 0.583316 | 5_4:+9313497 | Msa0835920:CDS |
| GAAATGAGGATTCTGATGGT+AGG | 0.584694 | 5_4:+9313501 | Msa0835920:CDS |
| ACTTGTGCCACGTCTGGACA+AGG | 0.593035 | 5_4:+9314498 | Msa0835920:CDS |
| TCGTGTAGATTCGACCATTG+TGG | 0.593428 | 5_4:+9314016 | Msa0835920:intron |
| TCTGGACAAGGACTCTATGA+AGG | 0.595755 | 5_4:+9314510 | Msa0835920:CDS |
| CAACGCTCAAAGCATTTGGA+AGG | 0.597973 | 5_4:-9314297 | None:intergenic |
| TGATTTATGAAAGAAGGGGA+AGG | 0.605479 | 5_4:-9313357 | None:intergenic |
| TGAAAATAGTGTCTCCACAA+TGG | 0.619967 | 5_4:-9314030 | None:intergenic |
| TACACTCTTTAACAGTGAAG+GGG | 0.620779 | 5_4:+9314717 | Msa0835920:three_prime_UTR |
| ATAGAGTCCTTGTCCAGACG+TGG | 0.637305 | 5_4:-9314505 | None:intergenic |
| GGATGTTGGAGGACAAGACA+AGG | 0.648549 | 5_4:+9313766 | Msa0835920:CDS |
| AAATGGGGTTGACAGTGTCA+CGG | 0.652051 | 5_4:+9313451 | Msa0835920:exon |
| GTCACTACCATACCAACCAT+AGG | 0.654409 | 5_4:+9313579 | Msa0835920:CDS |
| GTTATGATTTATGAAAGAAG+GGG | 0.657634 | 5_4:-9313361 | None:intergenic |
| ACACTCTTTAACAGTGAAGG+GGG | 0.670716 | 5_4:+9314718 | Msa0835920:three_prime_UTR |
| ACTTCATAGAATGCTTAGTG+AGG | 0.676324 | 5_4:+9314122 | Msa0835920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAGATATTATTTTTCAA+TGG | - | chr5_4:9313616-9313635 | None:intergenic | 10.0% |
| !!! | AAATAGATATTATTTTTCAA+TGG | - | chr5_4:9313616-9313635 | None:intergenic | 10.0% |
| !!! | ATTCAAGTTTTATACTTTTT+AGG | + | chr5_4:9313401-9313420 | Msa0835920:five_prime_UTR | 15.0% |
| !!! | TTCAAGTTTTATACTTTTTA+GGG | + | chr5_4:9313402-9313421 | Msa0835920:five_prime_UTR | 15.0% |
| !! | CTTGTTTAATAATAATAATG+AGG | + | chr5_4:9313852-9313871 | Msa0835920:intron | 15.0% |
| !!! | ATTCAAGTTTTATACTTTTT+AGG | + | chr5_4:9313401-9313420 | Msa0835920:five_prime_UTR | 15.0% |
| !!! | TTCAAGTTTTATACTTTTTA+GGG | + | chr5_4:9313402-9313421 | Msa0835920:five_prime_UTR | 15.0% |
| !! | CTTGTTTAATAATAATAATG+AGG | + | chr5_4:9313852-9313871 | Msa0835920:intron | 15.0% |
| !! | TGTTATGATTTATGAAAGAA+GGG | - | chr5_4:9313365-9313384 | None:intergenic | 20.0% |
| !! | TTGTTATGATTTATGAAAGA+AGG | - | chr5_4:9313366-9313385 | None:intergenic | 20.0% |
| !!! | CTAAATTTTGATTGAAACTA+AGG | + | chr5_4:9313425-9313444 | Msa0835920:five_prime_UTR | 20.0% |
| !! | ATTGAAACTAAGGTAAAAAT+GGG | + | chr5_4:9313435-9313454 | Msa0835920:exon | 20.0% |
| !!! | TTATTTTTCAATGGACTATT+TGG | - | chr5_4:9313607-9313626 | None:intergenic | 20.0% |
| !!! | TATTTCACTTTTATGTTGAA+AGG | - | chr5_4:9314194-9314213 | None:intergenic | 20.0% |
| !! | TTAATAAGCATTTACATTGT+AGG | + | chr5_4:9314228-9314247 | Msa0835920:intron | 20.0% |
| !! | TGTTATGATTTATGAAAGAA+GGG | - | chr5_4:9313365-9313384 | None:intergenic | 20.0% |
| !! | TTGTTATGATTTATGAAAGA+AGG | - | chr5_4:9313366-9313385 | None:intergenic | 20.0% |
| !!! | CTAAATTTTGATTGAAACTA+AGG | + | chr5_4:9313425-9313444 | Msa0835920:five_prime_UTR | 20.0% |
| !! | ATTGAAACTAAGGTAAAAAT+GGG | + | chr5_4:9313435-9313454 | Msa0835920:exon | 20.0% |
| !!! | TTATTTTTCAATGGACTATT+TGG | - | chr5_4:9313607-9313626 | None:intergenic | 20.0% |
| !!! | TATTTCACTTTTATGTTGAA+AGG | - | chr5_4:9314194-9314213 | None:intergenic | 20.0% |
| !! | TTAATAAGCATTTACATTGT+AGG | + | chr5_4:9314228-9314247 | Msa0835920:intron | 20.0% |
| ! | GTTATGATTTATGAAAGAAG+GGG | - | chr5_4:9313364-9313383 | None:intergenic | 25.0% |
| ! | GATTGAAACTAAGGTAAAAA+TGG | + | chr5_4:9313434-9313453 | Msa0835920:exon | 25.0% |
| ! | TTGAAACTAAGGTAAAAATG+GGG | + | chr5_4:9313436-9313455 | Msa0835920:exon | 25.0% |
| ! | TTTATGCAAAGAAAGAAATG+AGG | + | chr5_4:9313487-9313506 | Msa0835920:CDS | 25.0% |
| ! | TTAAAATGATCATAGGGAAT+AGG | - | chr5_4:9313648-9313667 | None:intergenic | 25.0% |
| ! | TTTCGCTTAAAATGATCATA+GGG | - | chr5_4:9313654-9313673 | None:intergenic | 25.0% |
| !! | TTTTCGCTTAAAATGATCAT+AGG | - | chr5_4:9313655-9313674 | None:intergenic | 25.0% |
| ! | TTTAATGTCTCAAATGAATC+AGG | + | chr5_4:9313695-9313714 | Msa0835920:intron | 25.0% |
| !! | ACTTGTTAGAACATATAAGA+AGG | - | chr5_4:9313944-9313963 | None:intergenic | 25.0% |
| ! | ATAATTCAAAGTTGAGTTCA+GGG | + | chr5_4:9314444-9314463 | Msa0835920:intron | 25.0% |
| ! | TGTATTGTTTGCTTATATAC+TGG | + | chr5_4:9314632-9314651 | Msa0835920:three_prime_UTR | 25.0% |
| ! | ACAGTGATTGATATTATAGT+TGG | - | chr5_4:9314696-9314715 | None:intergenic | 25.0% |
| ! | GTTATGATTTATGAAAGAAG+GGG | - | chr5_4:9313364-9313383 | None:intergenic | 25.0% |
| ! | GATTGAAACTAAGGTAAAAA+TGG | + | chr5_4:9313434-9313453 | Msa0835920:exon | 25.0% |
| ! | TTGAAACTAAGGTAAAAATG+GGG | + | chr5_4:9313436-9313455 | Msa0835920:exon | 25.0% |
| ! | TTTATGCAAAGAAAGAAATG+AGG | + | chr5_4:9313487-9313506 | Msa0835920:CDS | 25.0% |
| ! | TTAAAATGATCATAGGGAAT+AGG | - | chr5_4:9313648-9313667 | None:intergenic | 25.0% |
| ! | TTTCGCTTAAAATGATCATA+GGG | - | chr5_4:9313654-9313673 | None:intergenic | 25.0% |
| !! | TTTTCGCTTAAAATGATCAT+AGG | - | chr5_4:9313655-9313674 | None:intergenic | 25.0% |
| ! | TTTAATGTCTCAAATGAATC+AGG | + | chr5_4:9313695-9313714 | Msa0835920:intron | 25.0% |
| !! | ACTTGTTAGAACATATAAGA+AGG | - | chr5_4:9313944-9313963 | None:intergenic | 25.0% |
| ! | ATAATTCAAAGTTGAGTTCA+GGG | + | chr5_4:9314444-9314463 | Msa0835920:intron | 25.0% |
| ! | TGTATTGTTTGCTTATATAC+TGG | + | chr5_4:9314632-9314651 | Msa0835920:three_prime_UTR | 25.0% |
| ! | ACAGTGATTGATATTATAGT+TGG | - | chr5_4:9314696-9314715 | None:intergenic | 25.0% |
| ! | TCTAGTTTGCAATATGAACA+TGG | - | chr5_4:9313824-9313843 | None:intergenic | 30.0% |
| AGGTAATTCAGTTTGAACAT+CGG | + | chr5_4:9313872-9313891 | Msa0835920:intron | 30.0% | |
| CATAGTTCAATCAAGTGAAA+GGG | - | chr5_4:9313905-9313924 | None:intergenic | 30.0% | |
| TCATAGTTCAATCAAGTGAA+AGG | - | chr5_4:9313906-9313925 | None:intergenic | 30.0% | |
| GTTAGAACATATAAGAAGGT+TGG | - | chr5_4:9313940-9313959 | None:intergenic | 30.0% | |
| ! | CACTATTTTCAGAATACACA+AGG | + | chr5_4:9314042-9314061 | Msa0835920:CDS | 30.0% |
| ATTGGCAAATACAAGTAAAG+TGG | - | chr5_4:9314269-9314288 | None:intergenic | 30.0% | |
| GCAGAAATTACTGATAAACT+TGG | + | chr5_4:9314319-9314338 | Msa0835920:CDS | 30.0% | |
| CATAATTCAAAGTTGAGTTC+AGG | + | chr5_4:9314443-9314462 | Msa0835920:intron | 30.0% | |
| ! | TGTTACTTGATAACCAATCA+AGG | - | chr5_4:9314536-9314555 | None:intergenic | 30.0% |
| ! | TCTAGTTTGCAATATGAACA+TGG | - | chr5_4:9313824-9313843 | None:intergenic | 30.0% |
| AGGTAATTCAGTTTGAACAT+CGG | + | chr5_4:9313872-9313891 | Msa0835920:intron | 30.0% | |
| CATAGTTCAATCAAGTGAAA+GGG | - | chr5_4:9313905-9313924 | None:intergenic | 30.0% | |
| TCATAGTTCAATCAAGTGAA+AGG | - | chr5_4:9313906-9313925 | None:intergenic | 30.0% | |
| GTTAGAACATATAAGAAGGT+TGG | - | chr5_4:9313940-9313959 | None:intergenic | 30.0% | |
| ! | CACTATTTTCAGAATACACA+AGG | + | chr5_4:9314042-9314061 | Msa0835920:CDS | 30.0% |
| ATTGGCAAATACAAGTAAAG+TGG | - | chr5_4:9314269-9314288 | None:intergenic | 30.0% | |
| GCAGAAATTACTGATAAACT+TGG | + | chr5_4:9314319-9314338 | Msa0835920:CDS | 30.0% | |
| CATAATTCAAAGTTGAGTTC+AGG | + | chr5_4:9314443-9314462 | Msa0835920:intron | 30.0% | |
| ! | TGTTACTTGATAACCAATCA+AGG | - | chr5_4:9314536-9314555 | None:intergenic | 30.0% |
| TGATTTATGAAAGAAGGGGA+AGG | - | chr5_4:9313360-9313379 | None:intergenic | 35.0% | |
| GAAAGAAATGAGGATTCTGA+TGG | + | chr5_4:9313497-9313516 | Msa0835920:CDS | 35.0% | |
| ATACTCTACAAACTGAAGCT+TGG | + | chr5_4:9313549-9313568 | Msa0835920:CDS | 35.0% | |
| !! | AATGGACTATTTGGAACCTA+TGG | - | chr5_4:9313598-9313617 | None:intergenic | 35.0% |
| TGAAAATAGTGTCTCCACAA+TGG | - | chr5_4:9314033-9314052 | None:intergenic | 35.0% | |
| ! | TACACAAGGTCTTATCTTTG+TGG | + | chr5_4:9314056-9314075 | Msa0835920:CDS | 35.0% |
| CATTCTATGAAGTTCATCTC+TGG | - | chr5_4:9314115-9314134 | None:intergenic | 35.0% | |
| ACTTCATAGAATGCTTAGTG+AGG | + | chr5_4:9314122-9314141 | Msa0835920:CDS | 35.0% | |
| ATTTGGAAGGTCTTGCTTAT+TGG | - | chr5_4:9314287-9314306 | None:intergenic | 35.0% | |
| TGTACACTCTTTAACAGTGA+AGG | + | chr5_4:9314715-9314734 | Msa0835920:three_prime_UTR | 35.0% | |
| GTACACTCTTTAACAGTGAA+GGG | + | chr5_4:9314716-9314735 | Msa0835920:three_prime_UTR | 35.0% | |
| TACACTCTTTAACAGTGAAG+GGG | + | chr5_4:9314717-9314736 | Msa0835920:three_prime_UTR | 35.0% | |
| GATTTATGAAAGAAGGGGAA+GGG | - | chr5_4:9313359-9313378 | None:intergenic | 35.0% | |
| TGATTTATGAAAGAAGGGGA+AGG | - | chr5_4:9313360-9313379 | None:intergenic | 35.0% | |
| GAAAGAAATGAGGATTCTGA+TGG | + | chr5_4:9313497-9313516 | Msa0835920:CDS | 35.0% | |
| ATACTCTACAAACTGAAGCT+TGG | + | chr5_4:9313549-9313568 | Msa0835920:CDS | 35.0% | |
| !! | AATGGACTATTTGGAACCTA+TGG | - | chr5_4:9313598-9313617 | None:intergenic | 35.0% |
| TGAAAATAGTGTCTCCACAA+TGG | - | chr5_4:9314033-9314052 | None:intergenic | 35.0% | |
| ! | TACACAAGGTCTTATCTTTG+TGG | + | chr5_4:9314056-9314075 | Msa0835920:CDS | 35.0% |
| CATTCTATGAAGTTCATCTC+TGG | - | chr5_4:9314115-9314134 | None:intergenic | 35.0% | |
| ACTTCATAGAATGCTTAGTG+AGG | + | chr5_4:9314122-9314141 | Msa0835920:CDS | 35.0% | |
| ATTTGGAAGGTCTTGCTTAT+TGG | - | chr5_4:9314287-9314306 | None:intergenic | 35.0% | |
| TGTACACTCTTTAACAGTGA+AGG | + | chr5_4:9314715-9314734 | Msa0835920:three_prime_UTR | 35.0% | |
| GTACACTCTTTAACAGTGAA+GGG | + | chr5_4:9314716-9314735 | Msa0835920:three_prime_UTR | 35.0% | |
| TACACTCTTTAACAGTGAAG+GGG | + | chr5_4:9314717-9314736 | Msa0835920:three_prime_UTR | 35.0% | |
| GAAATGAGGATTCTGATGGT+AGG | + | chr5_4:9313501-9313520 | Msa0835920:CDS | 40.0% | |
| ! | TTTGGAACCTATGGTTGGTA+TGG | - | chr5_4:9313589-9313608 | None:intergenic | 40.0% |
| ! | GACTATTTGGAACCTATGGT+TGG | - | chr5_4:9313594-9313613 | None:intergenic | 40.0% |
| AAAATGTCAGCTTCACTGTC+TGG | + | chr5_4:9313744-9313763 | Msa0835920:CDS | 40.0% | |
| AAATGTCAGCTTCACTGTCT+GGG | + | chr5_4:9313745-9313764 | Msa0835920:CDS | 40.0% | |
| ACACTCTTTAACAGTGAAGG+GGG | + | chr5_4:9314718-9314737 | Msa0835920:three_prime_UTR | 40.0% | |
| GAAATGAGGATTCTGATGGT+AGG | + | chr5_4:9313501-9313520 | Msa0835920:CDS | 40.0% | |
| ! | TTTGGAACCTATGGTTGGTA+TGG | - | chr5_4:9313589-9313608 | None:intergenic | 40.0% |
| ! | GACTATTTGGAACCTATGGT+TGG | - | chr5_4:9313594-9313613 | None:intergenic | 40.0% |
| AAAATGTCAGCTTCACTGTC+TGG | + | chr5_4:9313744-9313763 | Msa0835920:CDS | 40.0% | |
| AAATGTCAGCTTCACTGTCT+GGG | + | chr5_4:9313745-9313764 | Msa0835920:CDS | 40.0% | |
| ACACTCTTTAACAGTGAAGG+GGG | + | chr5_4:9314718-9314737 | Msa0835920:three_prime_UTR | 40.0% | |
| AAATGGGGTTGACAGTGTCA+CGG | + | chr5_4:9313451-9313470 | Msa0835920:exon | 45.0% | |
| GTCACTACCATACCAACCAT+AGG | + | chr5_4:9313579-9313598 | Msa0835920:CDS | 45.0% | |
| TCGTGTAGATTCGACCATTG+TGG | + | chr5_4:9314016-9314035 | Msa0835920:intron | 45.0% | |
| ! | CAACGCTCAAAGCATTTGGA+AGG | - | chr5_4:9314300-9314319 | None:intergenic | 45.0% |
| ! | TCTGCAACGCTCAAAGCATT+TGG | - | chr5_4:9314304-9314323 | None:intergenic | 45.0% |
| !! | AGGGTGTTTTTGATCCGTTC+AGG | + | chr5_4:9314463-9314482 | Msa0835920:intron | 45.0% |
| GTTGACTGGATGTACCTGAA+CGG | - | chr5_4:9314480-9314499 | None:intergenic | 45.0% | |
| TCTGGACAAGGACTCTATGA+AGG | + | chr5_4:9314510-9314529 | Msa0835920:CDS | 45.0% | |
| GACTCTATGAAGGCCTTGAT+TGG | + | chr5_4:9314520-9314539 | Msa0835920:CDS | 45.0% | |
| AAATGGGGTTGACAGTGTCA+CGG | + | chr5_4:9313451-9313470 | Msa0835920:exon | 45.0% | |
| GTCACTACCATACCAACCAT+AGG | + | chr5_4:9313579-9313598 | Msa0835920:CDS | 45.0% | |
| TCGTGTAGATTCGACCATTG+TGG | + | chr5_4:9314016-9314035 | Msa0835920:intron | 45.0% | |
| ! | CAACGCTCAAAGCATTTGGA+AGG | - | chr5_4:9314300-9314319 | None:intergenic | 45.0% |
| ! | TCTGCAACGCTCAAAGCATT+TGG | - | chr5_4:9314304-9314323 | None:intergenic | 45.0% |
| !! | AGGGTGTTTTTGATCCGTTC+AGG | + | chr5_4:9314463-9314482 | Msa0835920:intron | 45.0% |
| GTTGACTGGATGTACCTGAA+CGG | - | chr5_4:9314480-9314499 | None:intergenic | 45.0% | |
| TCTGGACAAGGACTCTATGA+AGG | + | chr5_4:9314510-9314529 | Msa0835920:CDS | 45.0% | |
| GACTCTATGAAGGCCTTGAT+TGG | + | chr5_4:9314520-9314539 | Msa0835920:CDS | 45.0% | |
| ATGGTAGGTCTTGATGCTGC+TGG | + | chr5_4:9313516-9313535 | Msa0835920:CDS | 50.0% | |
| ! | AGCTTCACTGTCTGGGATGT+TGG | + | chr5_4:9313752-9313771 | Msa0835920:CDS | 50.0% |
| ! | TTCACTGTCTGGGATGTTGG+AGG | + | chr5_4:9313755-9313774 | Msa0835920:CDS | 50.0% |
| GGATGTTGGAGGACAAGACA+AGG | + | chr5_4:9313766-9313785 | Msa0835920:CDS | 50.0% | |
| ATAGAGTCCTTGTCCAGACG+TGG | - | chr5_4:9314508-9314527 | None:intergenic | 50.0% | |
| ATGGTAGGTCTTGATGCTGC+TGG | + | chr5_4:9313516-9313535 | Msa0835920:CDS | 50.0% | |
| ! | AGCTTCACTGTCTGGGATGT+TGG | + | chr5_4:9313752-9313771 | Msa0835920:CDS | 50.0% |
| ! | TTCACTGTCTGGGATGTTGG+AGG | + | chr5_4:9313755-9313774 | Msa0835920:CDS | 50.0% |
| GGATGTTGGAGGACAAGACA+AGG | + | chr5_4:9313766-9313785 | Msa0835920:CDS | 50.0% | |
| ATAGAGTCCTTGTCCAGACG+TGG | - | chr5_4:9314508-9314527 | None:intergenic | 50.0% | |
| ATTCACTTCGCCAGCGTCGT+TGG | + | chr5_4:9314347-9314366 | Msa0835920:CDS | 55.0% | |
| ACGTGACTTACCAACGACGC+TGG | - | chr5_4:9314360-9314379 | None:intergenic | 55.0% | |
| ! | CAGACGTGGCACAAGTTGAC+TGG | - | chr5_4:9314494-9314513 | None:intergenic | 55.0% |
| CAGTCAACTTGTGCCACGTC+TGG | + | chr5_4:9314492-9314511 | Msa0835920:CDS | 55.0% | |
| ACTTGTGCCACGTCTGGACA+AGG | + | chr5_4:9314498-9314517 | Msa0835920:CDS | 55.0% | |
| ATTCACTTCGCCAGCGTCGT+TGG | + | chr5_4:9314347-9314366 | Msa0835920:CDS | 55.0% | |
| ACGTGACTTACCAACGACGC+TGG | - | chr5_4:9314360-9314379 | None:intergenic | 55.0% | |
| ! | CAGACGTGGCACAAGTTGAC+TGG | - | chr5_4:9314494-9314513 | None:intergenic | 55.0% |
| CAGTCAACTTGTGCCACGTC+TGG | + | chr5_4:9314492-9314511 | Msa0835920:CDS | 55.0% | |
| ACTTGTGCCACGTCTGGACA+AGG | + | chr5_4:9314498-9314517 | Msa0835920:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 9313357 | 9314777 | 9313357 | ID=Msa0835920;Name=Msa0835920 |
| chr5_4 | mRNA | 9313357 | 9314777 | 9313357 | ID=Msa0835920-mRNA-1;Parent=Msa0835920;Name=Msa0835920-mRNA-1;_AED=0.15;_eAED=0.15;_QI=96|1|1|1|1|1|5|202|182 |
| chr5_4 | exon | 9313357 | 9313600 | 9313357 | ID=Msa0835920-mRNA-1:exon:4089;Parent=Msa0835920-mRNA-1 |
| chr5_4 | exon | 9313717 | 9313787 | 9313717 | ID=Msa0835920-mRNA-1:exon:4090;Parent=Msa0835920-mRNA-1 |
| chr5_4 | exon | 9314024 | 9314143 | 9314024 | ID=Msa0835920-mRNA-1:exon:4091;Parent=Msa0835920-mRNA-1 |
| chr5_4 | exon | 9314250 | 9314368 | 9314250 | ID=Msa0835920-mRNA-1:exon:4092;Parent=Msa0835920-mRNA-1 |
| chr5_4 | exon | 9314485 | 9314777 | 9314485 | ID=Msa0835920-mRNA-1:exon:4093;Parent=Msa0835920-mRNA-1 |
| chr5_4 | five_prime_UTR | 9313357 | 9313452 | 9313357 | ID=Msa0835920-mRNA-1:five_prime_utr;Parent=Msa0835920-mRNA-1 |
| chr5_4 | CDS | 9313453 | 9313600 | 9313453 | ID=Msa0835920-mRNA-1:cds;Parent=Msa0835920-mRNA-1 |
| chr5_4 | CDS | 9313717 | 9313787 | 9313717 | ID=Msa0835920-mRNA-1:cds;Parent=Msa0835920-mRNA-1 |
| chr5_4 | CDS | 9314024 | 9314143 | 9314024 | ID=Msa0835920-mRNA-1:cds;Parent=Msa0835920-mRNA-1 |
| chr5_4 | CDS | 9314250 | 9314368 | 9314250 | ID=Msa0835920-mRNA-1:cds;Parent=Msa0835920-mRNA-1 |
| chr5_4 | CDS | 9314485 | 9314575 | 9314485 | ID=Msa0835920-mRNA-1:cds;Parent=Msa0835920-mRNA-1 |
| chr5_4 | three_prime_UTR | 9314576 | 9314777 | 9314576 | ID=Msa0835920-mRNA-1:three_prime_utr;Parent=Msa0835920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
