AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0064550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064550 MtrunA17_Chr1g0166371 95.440 307 13 1 1 307 1 306 0.0 575
Msa0064550 MtrunA17_Chr1g0166361 81.405 242 45 0 66 307 1 242 3.74e-148 416
Msa0064550 MtrunA17_Chr6g0483681 45.307 309 150 6 6 306 15 312 1.35e-82 252
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064550 AT5G43860.1 60.194 309 114 3 3 302 4 312 1.01e-136 390
Msa0064550 AT1G19670.1 44.863 292 155 5 8 296 18 306 1.32e-82 253

Find 56 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGCTAACTTGTCAAAATT+TGG 0.166079 1_2:+25799387 None:intergenic
GTTGCAATCAAGAGAGATTT+TGG 0.211333 1_2:+25800907 None:intergenic
GATATGGCAACATTGGTTAT+TGG 0.240114 1_2:-25799189 Msa0064550:CDS
GCAACATTGGTTATTGGTTC+TGG 0.258641 1_2:-25799183 Msa0064550:CDS
TCCTCATGATTGACACCTTT+TGG 0.268999 1_2:+25799117 None:intergenic
AACTGGATCAACTCCTATTA+TGG 0.288193 1_2:+25799281 None:intergenic
TCATTCATTTGATTATGATA+TGG 0.288728 1_2:-25799205 Msa0064550:CDS
TTTCCTCTCTTAGTTGTATA+CGG 0.291769 1_2:-25799508 Msa0064550:intron
CTGTAGCTGCAATAACAAAT+TGG 0.301199 1_2:-25799452 Msa0064550:CDS
TTGGTTATTGGTTCTGGTTT+AGG 0.306609 1_2:-25799177 Msa0064550:CDS
CCTTTATCCATTCCATCAAC+TGG 0.334016 1_2:+25799264 None:intergenic
GCGAATGTGAGAAACCTTCT+TGG 0.345248 1_2:-25799086 Msa0064550:CDS
TGTTCACGTACACAACAATA+TGG 0.376449 1_2:-25801019 Msa0064550:intron
TAAATCTCTTCAGTTATATC+AGG 0.384754 1_2:+25799477 None:intergenic
GATGATACTAAAGGAGTTAG+AGG 0.384847 1_2:-25799021 Msa0064550:CDS
CCAGTTGATGGAATGGATAA+AGG 0.394237 1_2:-25799264 Msa0064550:CDS
ATTGAGCATGTTGCTTCTCA+TGG 0.404351 1_2:-25800805 Msa0064550:CDS
CTTCATTGTCATTGCTCCTC+AGG 0.404622 1_2:-25800782 Msa0064550:intron
ACTATACCACTAAGCTACTA+AGG 0.427307 1_2:-25801051 Msa0064550:CDS
GGGAAATCTCCACCTTCAAT+AGG 0.443716 1_2:+25800883 None:intergenic
TTGATTGCAACTCCTATTGA+AGG 0.448310 1_2:-25800895 Msa0064550:CDS
TTTCCTCCTTGTGCACCAAA+AGG 0.448584 1_2:-25799132 Msa0064550:CDS
ATCAACCCTTAGTAGCTTAG+TGG 0.451335 1_2:+25801045 None:intergenic
CCTCCAACAAACATCCTCAT+AGG 0.452224 1_2:+25798955 None:intergenic
AGTTATTGTTTATGTAAGAA+TGG 0.459976 1_2:-25798991 Msa0064550:CDS
TGAGGAACATAGGTGAGAAT+TGG 0.464534 1_2:+25799225 None:intergenic
ATAGGAGTTGATCCAGTTGA+TGG 0.466790 1_2:-25799276 Msa0064550:CDS
CACATGTAATTCAACTAATG+AGG 0.475882 1_2:-25798781 Msa0064550:three_prime_UTR
TGATTATGATATGGCAACAT+TGG 0.479916 1_2:-25799196 Msa0064550:CDS
GATGTTTGTTGGAGGAGTTA+TGG 0.484500 1_2:-25798947 Msa0064550:CDS
TTATGGTCATGTTGATATGT+TGG 0.487257 1_2:-25799046 Msa0064550:CDS
TCTTAGTTGTATACGGTGGC+TGG 0.500060 1_2:-25799501 Msa0064550:intron
ATAACAAATTGGCTATCTAA+AGG 0.506043 1_2:-25799441 Msa0064550:CDS
AAACCTATGAGGATGTTTGT+TGG 0.507798 1_2:-25798958 Msa0064550:CDS
TTTGACAAGTTAGCACTTGG+TGG 0.520012 1_2:-25799381 Msa0064550:CDS
TATGTAAGAATGGAGAATCA+AGG 0.525010 1_2:-25798981 Msa0064550:CDS
AGTTGATCCAGTTGATGGAA+TGG 0.545451 1_2:-25799271 Msa0064550:CDS
TTCTTGAAAGCTTATTTGCA+TGG 0.546906 1_2:-25798919 Msa0064550:CDS
ATCAAATGAATGAGGAACAT+AGG 0.554355 1_2:+25799215 None:intergenic
TAATCAAATTTCATCTCAAG+AGG 0.556121 1_2:+25798850 None:intergenic
CCTATGAGGATGTTTGTTGG+AGG 0.568018 1_2:-25798955 Msa0064550:CDS
ATATCATAATCAAATGAATG+AGG 0.572080 1_2:+25799207 None:intergenic
GAGAATCAAGGAAACCTATG+AGG 0.583866 1_2:-25798969 Msa0064550:CDS
GGAACATAGGTGAGAATTGG+TGG 0.587964 1_2:+25799228 None:intergenic
TTAGCCACAAAATACCAAGA+AGG 0.593683 1_2:+25799072 None:intergenic
TTGGTGGTCATAGTCGCGGC+GGG 0.594950 1_2:-25799365 Msa0064550:CDS
ATTGCAACTCCTATTGAAGG+TGG 0.601589 1_2:-25800892 Msa0064550:CDS
CTATACCACTAAGCTACTAA+GGG 0.617726 1_2:-25801050 Msa0064550:CDS
ATGATACTAAAGGAGTTAGA+GGG 0.619958 1_2:-25799020 Msa0064550:CDS
CACATAACTGATGATAGTTG+AGG 0.622996 1_2:+25801106 None:intergenic
TTATTTGCATGGTGATAATG+TGG 0.630656 1_2:-25798908 Msa0064550:CDS
CCTCTCTTAGTTGTATACGG+TGG 0.634151 1_2:-25799505 Msa0064550:intron
ACCAAAAGGTGTCAATCATG+AGG 0.655110 1_2:-25799118 Msa0064550:CDS
CTTGGTGGTCATAGTCGCGG+CGG 0.660141 1_2:-25799366 Msa0064550:CDS
GCACTTGGTGGTCATAGTCG+CGG 0.661508 1_2:-25799369 Msa0064550:CDS
ATGTTGGATGATGATACTAA+AGG 0.689048 1_2:-25799030 Msa0064550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATCATTAAAAACATTATT+AGG - chr1_2:25799233-25799252 Msa0064550:CDS 10.0%
!! ATATTATAACATAAGAAAAT+TGG - chr1_2:25799708-25799727 Msa0064550:intron 10.0%
!! AATTTCTTATAAAATCATAA+GGG + chr1_2:25799824-25799843 None:intergenic 10.0%
!! AAATTTCTTATAAAATCATA+AGG + chr1_2:25799825-25799844 None:intergenic 10.0%
!! TAATCATTAAAAACATTATT+AGG - chr1_2:25799233-25799252 Msa0064550:CDS 10.0%
!! ATATTATAACATAAGAAAAT+TGG - chr1_2:25799708-25799727 Msa0064550:intron 10.0%
!! AATTTCTTATAAAATCATAA+GGG + chr1_2:25799824-25799843 None:intergenic 10.0%
!! AAATTTCTTATAAAATCATA+AGG + chr1_2:25799825-25799844 None:intergenic 10.0%
!! TACATATTAAAATGTCAAAT+AGG + chr1_2:25799100-25799119 None:intergenic 15.0%
!!! TTTTAATGATTATGTGAAAT+TGG + chr1_2:25799225-25799244 None:intergenic 15.0%
!! AACAATAAAATGTTTATTTG+GGG + chr1_2:25799662-25799681 None:intergenic 15.0%
!! CAACAATAAAATGTTTATTT+GGG + chr1_2:25799663-25799682 None:intergenic 15.0%
!! ACAACAATAAAATGTTTATT+TGG + chr1_2:25799664-25799683 None:intergenic 15.0%
!! ATTTCTTATAAAATCATAAG+GGG + chr1_2:25799823-25799842 None:intergenic 15.0%
!! TACATATTAAAATGTCAAAT+AGG + chr1_2:25799100-25799119 None:intergenic 15.0%
!!! TTTTAATGATTATGTGAAAT+TGG + chr1_2:25799225-25799244 None:intergenic 15.0%
!! AACAATAAAATGTTTATTTG+GGG + chr1_2:25799662-25799681 None:intergenic 15.0%
!! CAACAATAAAATGTTTATTT+GGG + chr1_2:25799663-25799682 None:intergenic 15.0%
!! ACAACAATAAAATGTTTATT+TGG + chr1_2:25799664-25799683 None:intergenic 15.0%
!! ATTTCTTATAAAATCATAAG+GGG + chr1_2:25799823-25799842 None:intergenic 15.0%
!! ACATTATTAGGAGAATATAA+TGG - chr1_2:25799245-25799264 Msa0064550:CDS 20.0%
!! TAGAAAATTGTAGAATCATA+GGG - chr1_2:25799352-25799371 Msa0064550:CDS 20.0%
!!! TCCTTATTTATAAGACTTAA+TGG - chr1_2:25799495-25799514 Msa0064550:CDS 20.0%
!!! TCCATTAAGTCTTATAAATA+AGG + chr1_2:25799499-25799518 None:intergenic 20.0%
!! ACAATAAAATGTTTATTTGG+GGG + chr1_2:25799661-25799680 None:intergenic 20.0%
!! AAATTGAAATTTGAAGATGT+TGG + chr1_2:25799754-25799773 None:intergenic 20.0%
!! ACAAGAATTGAAATGAAATA+TGG + chr1_2:25799908-25799927 None:intergenic 20.0%
!!! TAAATTGTGAGTTTTTTAAG+TGG + chr1_2:25799942-25799961 None:intergenic 20.0%
!! CACTTTAAATACACAAAATA+AGG - chr1_2:25800006-25800025 Msa0064550:intron 20.0%
!!! TTTCTTTTTTGTTTTTTGTC+AGG + chr1_2:25800201-25800220 None:intergenic 20.0%
!!! TCAAAATTTGGTTTTATGTT+TGG + chr1_2:25800454-25800473 None:intergenic 20.0%
!! ATATCATAATCAAATGAATG+AGG + chr1_2:25800646-25800665 None:intergenic 20.0%
!! TCATTCATTTGATTATGATA+TGG - chr1_2:25800645-25800664 Msa0064550:intron 20.0%
!! AGTTATTGTTTATGTAAGAA+TGG - chr1_2:25800859-25800878 Msa0064550:CDS 20.0%
!! GTATAAAAATTAGAGAAGAT+AGG - chr1_2:25801027-25801046 Msa0064550:CDS 20.0%
!!! TTTATGTTTTAAGATATGCA+TGG - chr1_2:25801129-25801148 Msa0064550:five_prime_UTR 20.0%
!! ACATTATTAGGAGAATATAA+TGG - chr1_2:25799245-25799264 Msa0064550:CDS 20.0%
!! TAGAAAATTGTAGAATCATA+GGG - chr1_2:25799352-25799371 Msa0064550:CDS 20.0%
!!! TCCTTATTTATAAGACTTAA+TGG - chr1_2:25799495-25799514 Msa0064550:CDS 20.0%
!!! TCCATTAAGTCTTATAAATA+AGG + chr1_2:25799499-25799518 None:intergenic 20.0%
!! ACAATAAAATGTTTATTTGG+GGG + chr1_2:25799661-25799680 None:intergenic 20.0%
!! AAATTGAAATTTGAAGATGT+TGG + chr1_2:25799754-25799773 None:intergenic 20.0%
!! ACAAGAATTGAAATGAAATA+TGG + chr1_2:25799908-25799927 None:intergenic 20.0%
!!! TAAATTGTGAGTTTTTTAAG+TGG + chr1_2:25799942-25799961 None:intergenic 20.0%
!! CACTTTAAATACACAAAATA+AGG - chr1_2:25800006-25800025 Msa0064550:intron 20.0%
!!! TTTCTTTTTTGTTTTTTGTC+AGG + chr1_2:25800201-25800220 None:intergenic 20.0%
!!! TCAAAATTTGGTTTTATGTT+TGG + chr1_2:25800454-25800473 None:intergenic 20.0%
!! ATATCATAATCAAATGAATG+AGG + chr1_2:25800646-25800665 None:intergenic 20.0%
!! TCATTCATTTGATTATGATA+TGG - chr1_2:25800645-25800664 Msa0064550:intron 20.0%
!! AGTTATTGTTTATGTAAGAA+TGG - chr1_2:25800859-25800878 Msa0064550:CDS 20.0%
!! GTATAAAAATTAGAGAAGAT+AGG - chr1_2:25801027-25801046 Msa0064550:CDS 20.0%
!!! TTTATGTTTTAAGATATGCA+TGG - chr1_2:25801129-25801148 Msa0064550:five_prime_UTR 20.0%
!!! GTTAGTAATGTTTTTGAAAC+TGG - chr1_2:25798774-25798793 Msa0064550:three_prime_UTR 25.0%
! GTAGAAAATTGTAGAATCAT+AGG - chr1_2:25799351-25799370 Msa0064550:CDS 25.0%
!!! TAGGATTAGTTAATAGTTAG+TGG + chr1_2:25799551-25799570 None:intergenic 25.0%
!!! TAGGATTTTGTTGGTTAATT+AGG + chr1_2:25799570-25799589 None:intergenic 25.0%
!! TAAGATTCTTAGGATTTTGT+TGG + chr1_2:25799579-25799598 None:intergenic 25.0%
! CAATAAAATGTTTATTTGGG+GGG + chr1_2:25799660-25799679 None:intergenic 25.0%
! TGTTGTTAGAAAATTTGAGT+TGG - chr1_2:25799678-25799697 Msa0064550:intron 25.0%
! AATTCGTTGTAGTGAAAAAA+TGG + chr1_2:25799796-25799815 None:intergenic 25.0%
! TTATAAGAAATTTCAGTGCT+AGG - chr1_2:25799832-25799851 Msa0064550:intron 25.0%
! ATCTTAGAAAACATGTCTAA+TGG - chr1_2:25800037-25800056 Msa0064550:intron 25.0%
! TAAATCTCTTCAGTTATATC+AGG + chr1_2:25800376-25800395 None:intergenic 25.0%
! ATAACAAATTGGCTATCTAA+AGG - chr1_2:25800409-25800428 Msa0064550:intron 25.0%
!!! AAATTTGGTTTTATGTTTGG+TGG + chr1_2:25800451-25800470 None:intergenic 25.0%
!! CTAAAATTTTCAGCCATAAT+AGG - chr1_2:25800556-25800575 Msa0064550:intron 25.0%
! TAATCAAATTTCATCTCAAG+AGG + chr1_2:25801003-25801022 None:intergenic 25.0%
!! ACTTTTTGCTTAAGAATTTG+TGG + chr1_2:25798716-25798735 None:intergenic 25.0%
!!! GTTAGTAATGTTTTTGAAAC+TGG - chr1_2:25798774-25798793 Msa0064550:three_prime_UTR 25.0%
! GTAGAAAATTGTAGAATCAT+AGG - chr1_2:25799351-25799370 Msa0064550:CDS 25.0%
!!! TAGGATTAGTTAATAGTTAG+TGG + chr1_2:25799551-25799570 None:intergenic 25.0%
!!! TAGGATTTTGTTGGTTAATT+AGG + chr1_2:25799570-25799589 None:intergenic 25.0%
!! TAAGATTCTTAGGATTTTGT+TGG + chr1_2:25799579-25799598 None:intergenic 25.0%
! CAATAAAATGTTTATTTGGG+GGG + chr1_2:25799660-25799679 None:intergenic 25.0%
! TGTTGTTAGAAAATTTGAGT+TGG - chr1_2:25799678-25799697 Msa0064550:intron 25.0%
! AATTCGTTGTAGTGAAAAAA+TGG + chr1_2:25799796-25799815 None:intergenic 25.0%
! TTATAAGAAATTTCAGTGCT+AGG - chr1_2:25799832-25799851 Msa0064550:intron 25.0%
! ATCTTAGAAAACATGTCTAA+TGG - chr1_2:25800037-25800056 Msa0064550:intron 25.0%
! TAAATCTCTTCAGTTATATC+AGG + chr1_2:25800376-25800395 None:intergenic 25.0%
! ATAACAAATTGGCTATCTAA+AGG - chr1_2:25800409-25800428 Msa0064550:intron 25.0%
!!! AAATTTGGTTTTATGTTTGG+TGG + chr1_2:25800451-25800470 None:intergenic 25.0%
!! CTAAAATTTTCAGCCATAAT+AGG - chr1_2:25800556-25800575 Msa0064550:intron 25.0%
! TAATCAAATTTCATCTCAAG+AGG + chr1_2:25801003-25801022 None:intergenic 25.0%
TTAGCACACATGAACTATAT+AGG + chr1_2:25798891-25798910 None:intergenic 30.0%
CATGTAGAAAAAGTAGAAGT+GGG + chr1_2:25798990-25799009 None:intergenic 30.0%
TAGTTAATAGTTAGTGGAGT+TGG + chr1_2:25799545-25799564 None:intergenic 30.0%
ATCCTAAGAATCTTAACACA+TGG - chr1_2:25799584-25799603 Msa0064550:intron 30.0%
AAAAAATGGTGCAATGTCTA+TGG + chr1_2:25799782-25799801 None:intergenic 30.0%
TATAGGTCAATCAAACACAT+GGG - chr1_2:25799865-25799884 Msa0064550:intron 30.0%
GGAAAAAATTGGTTGCAATT+TGG + chr1_2:25800292-25800311 None:intergenic 30.0%
TAGAACTGTTGGGAAAAAAT+TGG + chr1_2:25800303-25800322 None:intergenic 30.0%
! TTTTCCCAACAGTTCTATTT+TGG - chr1_2:25800306-25800325 Msa0064550:intron 30.0%
TTCACCAAAATAGAACTGTT+GGG + chr1_2:25800313-25800332 None:intergenic 30.0%
TTTCACCAAAATAGAACTGT+TGG + chr1_2:25800314-25800333 None:intergenic 30.0%
TTTCCTCTCTTAGTTGTATA+CGG - chr1_2:25800342-25800361 Msa0064550:intron 30.0%
! AGTGCTAACTTGTCAAAATT+TGG + chr1_2:25800466-25800485 None:intergenic 30.0%
!! AATTTTGACAAGTTAGCACT+TGG - chr1_2:25800466-25800485 Msa0064550:intron 30.0%
ATCAAATGAATGAGGAACAT+AGG + chr1_2:25800638-25800657 None:intergenic 30.0%
TGATTATGATATGGCAACAT+TGG - chr1_2:25800654-25800673 Msa0064550:intron 30.0%
! TATTTTGTGGCTAAGGATTA+TGG - chr1_2:25800787-25800806 Msa0064550:CDS 30.0%
TTATGGTCATGTTGATATGT+TGG - chr1_2:25800804-25800823 Msa0064550:CDS 30.0%
ATGTTGGATGATGATACTAA+AGG - chr1_2:25800820-25800839 Msa0064550:CDS 30.0%
ATGATACTAAAGGAGTTAGA+GGG - chr1_2:25800830-25800849 Msa0064550:CDS 30.0%
TATGTAAGAATGGAGAATCA+AGG - chr1_2:25800869-25800888 Msa0064550:CDS 30.0%
TTCTTGAAAGCTTATTTGCA+TGG - chr1_2:25800931-25800950 Msa0064550:intron 30.0%
! TTATTTGCATGGTGATAATG+TGG - chr1_2:25800942-25800961 Msa0064550:intron 30.0%
CACATGTAATTCAACTAATG+AGG - chr1_2:25801069-25801088 Msa0064550:CDS 30.0%
TTAGCACACATGAACTATAT+AGG + chr1_2:25798891-25798910 None:intergenic 30.0%
CATGTAGAAAAAGTAGAAGT+GGG + chr1_2:25798990-25799009 None:intergenic 30.0%
TAGTTAATAGTTAGTGGAGT+TGG + chr1_2:25799545-25799564 None:intergenic 30.0%
ATCCTAAGAATCTTAACACA+TGG - chr1_2:25799584-25799603 Msa0064550:intron 30.0%
AAAAAATGGTGCAATGTCTA+TGG + chr1_2:25799782-25799801 None:intergenic 30.0%
TATAGGTCAATCAAACACAT+GGG - chr1_2:25799865-25799884 Msa0064550:intron 30.0%
GGAAAAAATTGGTTGCAATT+TGG + chr1_2:25800292-25800311 None:intergenic 30.0%
TAGAACTGTTGGGAAAAAAT+TGG + chr1_2:25800303-25800322 None:intergenic 30.0%
! TTTTCCCAACAGTTCTATTT+TGG - chr1_2:25800306-25800325 Msa0064550:intron 30.0%
TTCACCAAAATAGAACTGTT+GGG + chr1_2:25800313-25800332 None:intergenic 30.0%
TTTCACCAAAATAGAACTGT+TGG + chr1_2:25800314-25800333 None:intergenic 30.0%
TTTCCTCTCTTAGTTGTATA+CGG - chr1_2:25800342-25800361 Msa0064550:intron 30.0%
! AGTGCTAACTTGTCAAAATT+TGG + chr1_2:25800466-25800485 None:intergenic 30.0%
!! AATTTTGACAAGTTAGCACT+TGG - chr1_2:25800466-25800485 Msa0064550:intron 30.0%
ATCAAATGAATGAGGAACAT+AGG + chr1_2:25800638-25800657 None:intergenic 30.0%
TGATTATGATATGGCAACAT+TGG - chr1_2:25800654-25800673 Msa0064550:intron 30.0%
! TATTTTGTGGCTAAGGATTA+TGG - chr1_2:25800787-25800806 Msa0064550:CDS 30.0%
TTATGGTCATGTTGATATGT+TGG - chr1_2:25800804-25800823 Msa0064550:CDS 30.0%
ATGTTGGATGATGATACTAA+AGG - chr1_2:25800820-25800839 Msa0064550:CDS 30.0%
ATGATACTAAAGGAGTTAGA+GGG - chr1_2:25800830-25800849 Msa0064550:CDS 30.0%
TATGTAAGAATGGAGAATCA+AGG - chr1_2:25800869-25800888 Msa0064550:CDS 30.0%
TTCTTGAAAGCTTATTTGCA+TGG - chr1_2:25800931-25800950 Msa0064550:intron 30.0%
! TTATTTGCATGGTGATAATG+TGG - chr1_2:25800942-25800961 Msa0064550:intron 30.0%
CACATGTAATTCAACTAATG+AGG - chr1_2:25801069-25801088 Msa0064550:CDS 30.0%
CACATAACTGATGATAGTTG+AGG + chr1_2:25798747-25798766 None:intergenic 35.0%
ACTATACCACTAAGCTACTA+AGG - chr1_2:25798799-25798818 Msa0064550:three_prime_UTR 35.0%
CTATACCACTAAGCTACTAA+GGG - chr1_2:25798800-25798819 Msa0064550:three_prime_UTR 35.0%
TGTTCACGTACACAACAATA+TGG - chr1_2:25798831-25798850 Msa0064550:exon 35.0%
! GTTGCAATCAAGAGAGATTT+TGG + chr1_2:25798946-25798965 None:intergenic 35.0%
TTGATTGCAACTCCTATTGA+AGG - chr1_2:25798955-25798974 Msa0064550:CDS 35.0%
CCATGTAGAAAAAGTAGAAG+TGG + chr1_2:25798991-25799010 None:intergenic 35.0%
!!! CCACTTCTACTTTTTCTACA+TGG - chr1_2:25798988-25799007 Msa0064550:CDS 35.0%
! ACAATTTTCTACACTGTGCA+AGG + chr1_2:25799343-25799362 None:intergenic 35.0%
AGCCATGTGTTAAGATTCTT+AGG + chr1_2:25799589-25799608 None:intergenic 35.0%
AAATGTTTATTTGGGGGGTT+TGG + chr1_2:25799655-25799674 None:intergenic 35.0%
GTATAGGTCAATCAAACACA+TGG - chr1_2:25799864-25799883 Msa0064550:intron 35.0%
AGATTCACACACATAATGTG+TGG + chr1_2:25800165-25800184 None:intergenic 35.0%
!!! TTTTTTGTCAGGTAGCCTAT+TGG + chr1_2:25800190-25800209 None:intergenic 35.0%
CTGTAGCTGCAATAACAAAT+TGG - chr1_2:25800398-25800417 Msa0064550:intron 35.0%
AACTGGATCAACTCCTATTA+TGG + chr1_2:25800572-25800591 None:intergenic 35.0%
! GATATGGCAACATTGGTTAT+TGG - chr1_2:25800661-25800680 Msa0064550:intron 35.0%
!! TTGGTTATTGGTTCTGGTTT+AGG - chr1_2:25800673-25800692 Msa0064550:intron 35.0%
! GAAACCTTCTTGGTATTTTG+TGG - chr1_2:25800774-25800793 Msa0064550:intron 35.0%
TTAGCCACAAAATACCAAGA+AGG + chr1_2:25800781-25800800 None:intergenic 35.0%
! TTCTTGGTATTTTGTGGCTA+AGG - chr1_2:25800780-25800799 Msa0064550:intron 35.0%
GATGATACTAAAGGAGTTAG+AGG - chr1_2:25800829-25800848 Msa0064550:CDS 35.0%
AAACCTATGAGGATGTTTGT+TGG - chr1_2:25800892-25800911 Msa0064550:CDS 35.0%
CACATAACTGATGATAGTTG+AGG + chr1_2:25798747-25798766 None:intergenic 35.0%
ACTATACCACTAAGCTACTA+AGG - chr1_2:25798799-25798818 Msa0064550:three_prime_UTR 35.0%
CTATACCACTAAGCTACTAA+GGG - chr1_2:25798800-25798819 Msa0064550:three_prime_UTR 35.0%
TGTTCACGTACACAACAATA+TGG - chr1_2:25798831-25798850 Msa0064550:exon 35.0%
! GTTGCAATCAAGAGAGATTT+TGG + chr1_2:25798946-25798965 None:intergenic 35.0%
TTGATTGCAACTCCTATTGA+AGG - chr1_2:25798955-25798974 Msa0064550:CDS 35.0%
CCATGTAGAAAAAGTAGAAG+TGG + chr1_2:25798991-25799010 None:intergenic 35.0%
!!! CCACTTCTACTTTTTCTACA+TGG - chr1_2:25798988-25799007 Msa0064550:CDS 35.0%
! ACAATTTTCTACACTGTGCA+AGG + chr1_2:25799343-25799362 None:intergenic 35.0%
AGCCATGTGTTAAGATTCTT+AGG + chr1_2:25799589-25799608 None:intergenic 35.0%
AAATGTTTATTTGGGGGGTT+TGG + chr1_2:25799655-25799674 None:intergenic 35.0%
GTATAGGTCAATCAAACACA+TGG - chr1_2:25799864-25799883 Msa0064550:intron 35.0%
AGATTCACACACATAATGTG+TGG + chr1_2:25800165-25800184 None:intergenic 35.0%
!!! TTTTTTGTCAGGTAGCCTAT+TGG + chr1_2:25800190-25800209 None:intergenic 35.0%
CTGTAGCTGCAATAACAAAT+TGG - chr1_2:25800398-25800417 Msa0064550:intron 35.0%
AACTGGATCAACTCCTATTA+TGG + chr1_2:25800572-25800591 None:intergenic 35.0%
! GATATGGCAACATTGGTTAT+TGG - chr1_2:25800661-25800680 Msa0064550:intron 35.0%
!! TTGGTTATTGGTTCTGGTTT+AGG - chr1_2:25800673-25800692 Msa0064550:intron 35.0%
! GAAACCTTCTTGGTATTTTG+TGG - chr1_2:25800774-25800793 Msa0064550:intron 35.0%
TTAGCCACAAAATACCAAGA+AGG + chr1_2:25800781-25800800 None:intergenic 35.0%
! TTCTTGGTATTTTGTGGCTA+AGG - chr1_2:25800780-25800799 Msa0064550:intron 35.0%
GATGATACTAAAGGAGTTAG+AGG - chr1_2:25800829-25800848 Msa0064550:CDS 35.0%
AAACCTATGAGGATGTTTGT+TGG - chr1_2:25800892-25800911 Msa0064550:CDS 35.0%
ATCAACCCTTAGTAGCTTAG+TGG + chr1_2:25798808-25798827 None:intergenic 40.0%
!! ATCAAGAGAGATTTTGGTGG+TGG + chr1_2:25798940-25798959 None:intergenic 40.0%
! GCAATCAAGAGAGATTTTGG+TGG + chr1_2:25798943-25798962 None:intergenic 40.0%
ATTGCAACTCCTATTGAAGG+TGG - chr1_2:25798958-25798977 Msa0064550:CDS 40.0%
! ATTGAGCATGTTGCTTCTCA+TGG - chr1_2:25799045-25799064 Msa0064550:CDS 40.0%
GTCAAATAGGAACTAACCTG+AGG + chr1_2:25799087-25799106 None:intergenic 40.0%
!! TGTTTGCAAGAAGCACTTCT+AGG - chr1_2:25799135-25799154 Msa0064550:CDS 40.0%
!! GTTTGCAAGAAGCACTTCTA+GGG - chr1_2:25799136-25799155 Msa0064550:CDS 40.0%
! ATTTTCTACACTGTGCAAGG+AGG + chr1_2:25799340-25799359 None:intergenic 40.0%
! TGCTAGGACTATGAGAGTAT+AGG - chr1_2:25799848-25799867 Msa0064550:intron 40.0%
TACCAACTGGCTACAATTAC+GGG + chr1_2:25800085-25800104 None:intergenic 40.0%
CTACCAACTGGCTACAATTA+CGG + chr1_2:25800086-25800105 None:intergenic 40.0%
TATCACGGACATTATGTGCA+GGG - chr1_2:25800107-25800126 Msa0064550:intron 40.0%
TGTGTGTGAATCTAGCCAAT+AGG - chr1_2:25800172-25800191 Msa0064550:intron 40.0%
TTTGACAAGTTAGCACTTGG+TGG - chr1_2:25800469-25800488 Msa0064550:intron 40.0%
! ATAGGAGTTGATCCAGTTGA+TGG - chr1_2:25800574-25800593 Msa0064550:intron 40.0%
!! AGTTGATCCAGTTGATGGAA+TGG - chr1_2:25800579-25800598 Msa0064550:intron 40.0%
CCTTTATCCATTCCATCAAC+TGG + chr1_2:25800589-25800608 None:intergenic 40.0%
!! CCAGTTGATGGAATGGATAA+AGG - chr1_2:25800586-25800605 Msa0064550:intron 40.0%
TGAGGAACATAGGTGAGAAT+TGG + chr1_2:25800628-25800647 None:intergenic 40.0%
!! GCAACATTGGTTATTGGTTC+TGG - chr1_2:25800667-25800686 Msa0064550:intron 40.0%
!! ACCAAAAGGTGTCAATCATG+AGG - chr1_2:25800732-25800751 Msa0064550:intron 40.0%
! TCCTCATGATTGACACCTTT+TGG + chr1_2:25800736-25800755 None:intergenic 40.0%
GAGAATCAAGGAAACCTATG+AGG - chr1_2:25800881-25800900 Msa0064550:CDS 40.0%
! GATGTTTGTTGGAGGAGTTA+TGG - chr1_2:25800903-25800922 Msa0064550:CDS 40.0%
ATCAACCCTTAGTAGCTTAG+TGG + chr1_2:25798808-25798827 None:intergenic 40.0%
!! ATCAAGAGAGATTTTGGTGG+TGG + chr1_2:25798940-25798959 None:intergenic 40.0%
! GCAATCAAGAGAGATTTTGG+TGG + chr1_2:25798943-25798962 None:intergenic 40.0%
ATTGCAACTCCTATTGAAGG+TGG - chr1_2:25798958-25798977 Msa0064550:CDS 40.0%
! ATTGAGCATGTTGCTTCTCA+TGG - chr1_2:25799045-25799064 Msa0064550:CDS 40.0%
GTCAAATAGGAACTAACCTG+AGG + chr1_2:25799087-25799106 None:intergenic 40.0%
!! TGTTTGCAAGAAGCACTTCT+AGG - chr1_2:25799135-25799154 Msa0064550:CDS 40.0%
!! GTTTGCAAGAAGCACTTCTA+GGG - chr1_2:25799136-25799155 Msa0064550:CDS 40.0%
! ATTTTCTACACTGTGCAAGG+AGG + chr1_2:25799340-25799359 None:intergenic 40.0%
! TGCTAGGACTATGAGAGTAT+AGG - chr1_2:25799848-25799867 Msa0064550:intron 40.0%
TACCAACTGGCTACAATTAC+GGG + chr1_2:25800085-25800104 None:intergenic 40.0%
CTACCAACTGGCTACAATTA+CGG + chr1_2:25800086-25800105 None:intergenic 40.0%
TATCACGGACATTATGTGCA+GGG - chr1_2:25800107-25800126 Msa0064550:intron 40.0%
TGTGTGTGAATCTAGCCAAT+AGG - chr1_2:25800172-25800191 Msa0064550:intron 40.0%
TTTGACAAGTTAGCACTTGG+TGG - chr1_2:25800469-25800488 Msa0064550:intron 40.0%
! ATAGGAGTTGATCCAGTTGA+TGG - chr1_2:25800574-25800593 Msa0064550:intron 40.0%
!! AGTTGATCCAGTTGATGGAA+TGG - chr1_2:25800579-25800598 Msa0064550:intron 40.0%
CCTTTATCCATTCCATCAAC+TGG + chr1_2:25800589-25800608 None:intergenic 40.0%
!! CCAGTTGATGGAATGGATAA+AGG - chr1_2:25800586-25800605 Msa0064550:intron 40.0%
TGAGGAACATAGGTGAGAAT+TGG + chr1_2:25800628-25800647 None:intergenic 40.0%
!! GCAACATTGGTTATTGGTTC+TGG - chr1_2:25800667-25800686 Msa0064550:intron 40.0%
!! ACCAAAAGGTGTCAATCATG+AGG - chr1_2:25800732-25800751 Msa0064550:intron 40.0%
! TCCTCATGATTGACACCTTT+TGG + chr1_2:25800736-25800755 None:intergenic 40.0%
GAGAATCAAGGAAACCTATG+AGG - chr1_2:25800881-25800900 Msa0064550:CDS 40.0%
! GATGTTTGTTGGAGGAGTTA+TGG - chr1_2:25800903-25800922 Msa0064550:CDS 40.0%
GGGAAATCTCCACCTTCAAT+AGG + chr1_2:25798970-25798989 None:intergenic 45.0%
CTTCATTGTCATTGCTCCTC+AGG - chr1_2:25799068-25799087 Msa0064550:CDS 45.0%
AACCCTATACCTCTAACCTC+TGG - chr1_2:25799611-25799630 Msa0064550:intron 45.0%
! AGCCAGAGGTTAGAGGTATA+GGG + chr1_2:25799616-25799635 None:intergenic 45.0%
!! TAGCCAGTTGGTAGCTATCA+CGG - chr1_2:25800092-25800111 Msa0064550:intron 45.0%
CTATCACGGACATTATGTGC+AGG - chr1_2:25800106-25800125 Msa0064550:intron 45.0%
ATCACGGACATTATGTGCAG+GGG - chr1_2:25800108-25800127 Msa0064550:intron 45.0%
ACACATAATGTGTGGAGAGG+TGG + chr1_2:25800157-25800176 None:intergenic 45.0%
CACACACATAATGTGTGGAG+AGG + chr1_2:25800160-25800179 None:intergenic 45.0%
CCACCGTATACAACTAAGAG+AGG + chr1_2:25800348-25800367 None:intergenic 45.0%
CCTCTCTTAGTTGTATACGG+TGG - chr1_2:25800345-25800364 Msa0064550:intron 45.0%
TCTTAGTTGTATACGGTGGC+TGG - chr1_2:25800349-25800368 Msa0064550:intron 45.0%
GGAACATAGGTGAGAATTGG+TGG + chr1_2:25800625-25800644 None:intergenic 45.0%
TTTCCTCCTTGTGCACCAAA+AGG - chr1_2:25800718-25800737 Msa0064550:intron 45.0%
!! TTGACACCTTTTGGTGCACA+AGG + chr1_2:25800727-25800746 None:intergenic 45.0%
GCGAATGTGAGAAACCTTCT+TGG - chr1_2:25800764-25800783 Msa0064550:intron 45.0%
CCTCCAACAAACATCCTCAT+AGG + chr1_2:25800898-25800917 None:intergenic 45.0%
! CCTATGAGGATGTTTGTTGG+AGG - chr1_2:25800895-25800914 Msa0064550:CDS 45.0%
GGGAAATCTCCACCTTCAAT+AGG + chr1_2:25798970-25798989 None:intergenic 45.0%
CTTCATTGTCATTGCTCCTC+AGG - chr1_2:25799068-25799087 Msa0064550:CDS 45.0%
AACCCTATACCTCTAACCTC+TGG - chr1_2:25799611-25799630 Msa0064550:intron 45.0%
! AGCCAGAGGTTAGAGGTATA+GGG + chr1_2:25799616-25799635 None:intergenic 45.0%
!! TAGCCAGTTGGTAGCTATCA+CGG - chr1_2:25800092-25800111 Msa0064550:intron 45.0%
CTATCACGGACATTATGTGC+AGG - chr1_2:25800106-25800125 Msa0064550:intron 45.0%
ATCACGGACATTATGTGCAG+GGG - chr1_2:25800108-25800127 Msa0064550:intron 45.0%
ACACATAATGTGTGGAGAGG+TGG + chr1_2:25800157-25800176 None:intergenic 45.0%
CACACACATAATGTGTGGAG+AGG + chr1_2:25800160-25800179 None:intergenic 45.0%
CCACCGTATACAACTAAGAG+AGG + chr1_2:25800348-25800367 None:intergenic 45.0%
CCTCTCTTAGTTGTATACGG+TGG - chr1_2:25800345-25800364 Msa0064550:intron 45.0%
TCTTAGTTGTATACGGTGGC+TGG - chr1_2:25800349-25800368 Msa0064550:intron 45.0%
GGAACATAGGTGAGAATTGG+TGG + chr1_2:25800625-25800644 None:intergenic 45.0%
TTTCCTCCTTGTGCACCAAA+AGG - chr1_2:25800718-25800737 Msa0064550:intron 45.0%
!! TTGACACCTTTTGGTGCACA+AGG + chr1_2:25800727-25800746 None:intergenic 45.0%
GCGAATGTGAGAAACCTTCT+TGG - chr1_2:25800764-25800783 Msa0064550:intron 45.0%
CCTCCAACAAACATCCTCAT+AGG + chr1_2:25800898-25800917 None:intergenic 45.0%
! CCTATGAGGATGTTTGTTGG+AGG - chr1_2:25800895-25800914 Msa0064550:CDS 45.0%
! GAGCCAGAGGTTAGAGGTAT+AGG + chr1_2:25799617-25799636 None:intergenic 50.0%
TGGTTTGAGCCAGAGGTTAG+AGG + chr1_2:25799623-25799642 None:intergenic 50.0%
GTCCCGTAATTGTAGCCAGT+TGG - chr1_2:25800080-25800099 Msa0064550:intron 50.0%
TGTCCGTGATAGCTACCAAC+TGG + chr1_2:25800098-25800117 None:intergenic 50.0%
! AGAATCTGAGGTTCGAACCC+CGG + chr1_2:25800134-25800153 None:intergenic 50.0%
!! ACACCTTTTGGTGCACAAGG+AGG + chr1_2:25800724-25800743 None:intergenic 50.0%
! GAGCCAGAGGTTAGAGGTAT+AGG + chr1_2:25799617-25799636 None:intergenic 50.0%
TGGTTTGAGCCAGAGGTTAG+AGG + chr1_2:25799623-25799642 None:intergenic 50.0%
GTCCCGTAATTGTAGCCAGT+TGG - chr1_2:25800080-25800099 Msa0064550:intron 50.0%
TGTCCGTGATAGCTACCAAC+TGG + chr1_2:25800098-25800117 None:intergenic 50.0%
! AGAATCTGAGGTTCGAACCC+CGG + chr1_2:25800134-25800153 None:intergenic 50.0%
!! ACACCTTTTGGTGCACAAGG+AGG + chr1_2:25800724-25800743 None:intergenic 50.0%
!! GCTCAACTGGTTTGAGCCAG+AGG + chr1_2:25799630-25799649 None:intergenic 55.0%
GTGGAGAGGTGGAGAATCTG+AGG + chr1_2:25800146-25800165 None:intergenic 55.0%
! GCACTTGGTGGTCATAGTCG+CGG - chr1_2:25800481-25800500 Msa0064550:intron 55.0%
!! GCTCAACTGGTTTGAGCCAG+AGG + chr1_2:25799630-25799649 None:intergenic 55.0%
GTGGAGAGGTGGAGAATCTG+AGG + chr1_2:25800146-25800165 None:intergenic 55.0%
! GCACTTGGTGGTCATAGTCG+CGG - chr1_2:25800481-25800500 Msa0064550:intron 55.0%
! GGGGGGTTTGGTAGCTCAAC+TGG + chr1_2:25799643-25799662 None:intergenic 60.0%
CGGACATTATGTGCAGGGGC+CGG - chr1_2:25800112-25800131 Msa0064550:intron 60.0%
GGACATTATGTGCAGGGGCC+GGG - chr1_2:25800113-25800132 Msa0064550:intron 60.0%
GACATTATGTGCAGGGGCCG+GGG - chr1_2:25800114-25800133 Msa0064550:intron 60.0%
! CTTGGTGGTCATAGTCGCGG+CGG - chr1_2:25800484-25800503 Msa0064550:intron 60.0%
! TTGGTGGTCATAGTCGCGGC+GGG - chr1_2:25800485-25800504 Msa0064550:intron 60.0%
! GGGGGGTTTGGTAGCTCAAC+TGG + chr1_2:25799643-25799662 None:intergenic 60.0%
CGGACATTATGTGCAGGGGC+CGG - chr1_2:25800112-25800131 Msa0064550:intron 60.0%
GGACATTATGTGCAGGGGCC+GGG - chr1_2:25800113-25800132 Msa0064550:intron 60.0%
GACATTATGTGCAGGGGCCG+GGG - chr1_2:25800114-25800133 Msa0064550:intron 60.0%
! CTTGGTGGTCATAGTCGCGG+CGG - chr1_2:25800484-25800503 Msa0064550:intron 60.0%
! TTGGTGGTCATAGTCGCGGC+GGG - chr1_2:25800485-25800504 Msa0064550:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 25798716 25801156 25798716 ID=Msa0064550;Name=Msa0064550
chr1_2 mRNA 25798716 25801156 25798716 ID=Msa0064550-mRNA-1;Parent=Msa0064550;Name=Msa0064550-mRNA-1;_AED=0.24;_eAED=0.24;_QI=46|1|1|1|1|1|3|124|307
chr1_2 exon 25798716 25799517 25798716 ID=Msa0064550-mRNA-1:exon:9210;Parent=Msa0064550-mRNA-1
chr1_2 exon 25800783 25800937 25800783 ID=Msa0064550-mRNA-1:exon:9209;Parent=Msa0064550-mRNA-1
chr1_2 exon 25801020 25801156 25801020 ID=Msa0064550-mRNA-1:exon:9208;Parent=Msa0064550-mRNA-1
chr1_2 five_prime_UTR 25801111 25801156 25801111 ID=Msa0064550-mRNA-1:five_prime_utr;Parent=Msa0064550-mRNA-1
chr1_2 CDS 25801020 25801110 25801020 ID=Msa0064550-mRNA-1:cds;Parent=Msa0064550-mRNA-1
chr1_2 CDS 25800783 25800937 25800783 ID=Msa0064550-mRNA-1:cds;Parent=Msa0064550-mRNA-1
chr1_2 CDS 25798840 25799517 25798840 ID=Msa0064550-mRNA-1:cds;Parent=Msa0064550-mRNA-1
chr1_2 three_prime_UTR 25798716 25798839 25798716 ID=Msa0064550-mRNA-1:three_prime_utr;Parent=Msa0064550-mRNA-1
Gene Sequence

>Msa0064550

ATGTGTTCTTCTGTTAGTAATGTTTTTGAAACTGGTAACTATACCACTAAGCTACTAAGGGTTGATTCTTGTTCACGTACACAACAATATGTTCCACCACCAAAATCTCTCTTGATTGCAACTCCTATTGAAGGTGGAGATTTCCCACTTCTACTTTTTCTACATGGCTATCTTCTTTTGAACTCATTTTATTCTCAGCTTATTGAGCATGTTGCTTCTCATGGCTTCATTGTCATTGCTCCTCAGTTGTATACGGTGGCTGGACCTGATATAACTGAAGAGATTTACTCTGTAGCTGCAATAACAAATTGGCTATCTAAAGGACTTAGCAAGATTCTTCCACCAAACATAAAACCAAATTTTGACAAGTTAGCACTTGGTGGTCATAGTCGCGGCGGGAAAACATCATTTGCTATTGCTCTAAGAAAATTAAACATCACAACTGATCTAAAATTTTCAGCCATAATAGGAGTTGATCCAGTTGATGGAATGGATAAAGGAAAGCAAACATCACCACCAATTCTCACCTATGTTCCTCATTCATTTGATTATGATATGGCAACATTGGTTATTGGTTCTGGTTTAGGTGATGTGAAAAAGAACTCTTTGTTTCCTCCTTGTGCACCAAAAGGTGTCAATCATGAGGATTTTTTTAGCGAATGTGAGAAACCTTCTTGGTATTTTGTGGCTAAGGATTATGGTCATGTTGATATGTTGGATGATGATACTAAAGGAGTTAGAGGGAAAGTTAGTTATTGTTTATGTAAGAATGGAGAATCAAGGAAACCTATGAGGATGTTTGTTGGAGGAGTTATGGTTGCATTCTTGAAAGCTTATTTGCATGGTGATAATGTGGACTTATTAGCTATAAGAGACAAGAGTGTGAGTGTTCCTCTTGAGATGAAATTTGATTATTTTGTATAA

Protein sequence

>Msa0064550

MCSSVSNVFETGNYTTKLLRVDSCSRTQQYVPPPKSLLIATPIEGGDFPLLLFLHGYLLLNSFYSQLIEHVASHGFIVIAPQLYTVAGPDITEEIYSVAAITNWLSKGLSKILPPNIKPNFDKLALGGHSRGGKTSFAIALRKLNITTDLKFSAIIGVDPVDGMDKGKQTSPPILTYVPHSFDYDMATLVIGSGLGDVKKNSLFPPCAPKGVNHEDFFSECEKPSWYFVAKDYGHVDMLDDDTKGVRGKVSYCLCKNGESRKPMRMFVGGVMVAFLKAYLHGDNVDLLAIRDKSVSVPLEMKFDYFV*