AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1353760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353760 MtrunA17_Chr1g0153371 96.266 482 18 0 1 482 1 482 0.0 964
Msa1353760 MtrunA17_Chr4g0044851 68.000 450 139 3 22 468 22 469 0.0 647
Msa1353760 MtrunA17_Chr4g0044841 66.960 454 145 4 19 469 21 472 0.0 638
Msa1353760 MtrunA17_Chr8g0369791 55.054 465 193 6 6 467 12 463 0.0 535
Msa1353760 MtrunA17_Chr5g0408181 54.915 468 197 6 5 467 3 461 0.0 528
Msa1353760 MtrunA17_Chr1g0164371 51.812 469 214 5 1 465 12 472 7.82e-165 474
Msa1353760 MtrunA17_Chr2g0293421 31.656 477 309 10 8 472 20 491 3.16e-81 260
Msa1353760 MtrunA17_Chr2g0293411 32.231 484 306 12 6 471 10 489 2.79e-78 252
Msa1353760 MtrunA17_Chr7g0226771 33.860 443 275 9 9 440 7 442 3.43e-78 252
Msa1353760 MtrunA17_Chr6g0455461 32.110 436 283 9 35 465 33 460 2.35e-76 246
Msa1353760 MtrunA17_Chr8g0341951 32.009 453 287 12 1 440 1 445 2.23e-74 242
Msa1353760 MtrunA17_Chr7g0219961 30.805 435 291 7 35 466 33 460 5.16e-74 240
Msa1353760 MtrunA17_Chr8g0381541 31.667 480 312 8 6 472 16 492 7.17e-74 241
Msa1353760 MtrunA17_Chr3g0078411 31.034 435 289 8 35 465 33 460 1.74e-73 239
Msa1353760 MtrunA17_Chr5g0443401 32.500 480 302 11 1 465 1 473 4.88e-73 238
Msa1353760 MtrunA17_Chr3g0113321 32.536 418 262 7 34 438 28 438 7.39e-73 238
Msa1353760 MtrunA17_Chr8g0388921 30.737 475 312 8 3 467 8 475 1.08e-71 235
Msa1353760 MtrunA17_Chr5g0403931 31.743 482 313 9 2 470 3 481 2.55e-71 234
Msa1353760 MtrunA17_Chr8g0381571 32.366 448 287 8 6 440 16 460 9.77e-71 232
Msa1353760 MtrunA17_Chr3g0089361 32.018 456 293 10 23 468 28 476 3.89e-70 231
Msa1353760 MtrunA17_Chr5g0443731 31.473 448 291 6 27 462 21 464 1.96e-68 226
Msa1353760 MtrunA17_Chr3g0107511 30.655 473 311 7 9 466 8 478 2.03e-68 226
Msa1353760 MtrunA17_Chr5g0400421 31.198 484 313 11 1 465 4 486 1.09e-66 222
Msa1353760 MtrunA17_Chr3g0107501 30.512 449 300 6 28 465 26 473 7.33e-66 219
Msa1353760 MtrunA17_Chr3g0141801 31.130 469 307 8 9 465 16 480 1.01e-64 217
Msa1353760 MtrunA17_Chr8g0372711 30.682 440 296 5 7 439 17 454 2.63e-64 216
Msa1353760 MtrunA17_Chr5g0400411 31.546 485 309 12 1 465 4 485 7.74e-63 212
Msa1353760 MtrunA17_Chr8g0373441 32.151 423 258 12 4 411 7 415 1.26e-62 209
Msa1353760 MtrunA17_Chr5g0397971 29.882 425 286 7 25 440 21 442 2.27e-61 208
Msa1353760 MtrunA17_Chr8g0339861 30.390 487 314 14 1 472 13 489 7.81e-61 206
Msa1353760 MtrunA17_Chr8g0372411 29.808 416 277 8 36 440 40 451 1.15e-60 206
Msa1353760 MtrunA17_Chr3g0089351 30.402 398 268 8 70 465 1 391 1.39e-60 203
Msa1353760 MtrunA17_Chr8g0380471 28.238 471 323 7 4 465 8 472 6.71e-60 204
Msa1353760 MtrunA17_Chr8g0380931 29.374 463 302 8 19 465 48 501 3.31e-58 200
Msa1353760 MtrunA17_Chr6g0478161 28.256 453 304 8 2 440 17 462 1.53e-55 192
Msa1353760 MtrunA17_Chr8g0381551 28.931 318 212 6 6 312 16 330 1.59e-34 132
Msa1353760 MtrunA17_Chr8g0334891 25.885 452 292 16 26 456 32 461 2.70e-32 129
Msa1353760 MtrunA17_Chr1g0161671 29.333 300 199 6 21 310 17 313 2.71e-32 125
Msa1353760 MtrunA17_Chr4g0000151 37.324 142 87 2 332 472 5 145 6.82e-29 111
Msa1353760 MtrunA17_Chr5g0404861 42.975 121 66 1 326 443 15 135 9.67e-29 111
Msa1353760 MtrunA17_Chr1g0162811 27.594 453 287 17 1 420 1 445 9.88e-28 115
Msa1353760 MtrunA17_Chr8g0381561 44.231 104 57 1 338 440 8 111 5.87e-26 102
Msa1353760 MtrunA17_Chr6g0463551 29.444 180 118 3 193 365 12 189 9.42e-26 104
Msa1353760 MtrunA17_Chr8g0334941 29.615 260 155 8 210 456 62 306 2.29e-25 106
Msa1353760 MtrunA17_Chr8g0361471 25.586 469 298 18 10 435 5 465 3.12e-24 105
Msa1353760 MtrunA17_Chr4g0013471 26.282 312 206 8 27 327 35 333 7.07e-24 103
Msa1353760 MtrunA17_Chr4g0000161 28.475 295 195 7 29 312 37 326 1.03e-23 102
Msa1353760 MtrunA17_Chr4g0004601 24.221 417 269 14 65 448 107 509 1.41e-23 103
Msa1353760 MtrunA17_Chr7g0235261 23.684 418 272 14 64 448 85 488 5.63e-23 101
Msa1353760 MtrunA17_Chr2g0310391 24.153 472 310 15 8 443 2 461 7.66e-23 101
Msa1353760 MtrunA17_Chr2g0310381 24.286 490 310 16 9 464 6 468 1.21e-22 100
Msa1353760 MtrunA17_Chr5g0437001 41.667 108 59 1 333 436 1 108 1.27e-22 94.4
Msa1353760 MtrunA17_Chr4g0000171 27.273 297 200 7 27 312 35 326 1.79e-22 98.2
Msa1353760 MtrunA17_Chr6g0465511 24.839 467 304 18 10 435 5 465 2.17e-22 100
Msa1353760 MtrunA17_Chr5g0436981 33.537 164 103 3 28 185 21 184 2.83e-22 94.4
Msa1353760 MtrunA17_Chr6g0466331 24.839 467 304 18 10 435 5 465 3.34e-22 99.4
Msa1353760 MtrunA17_Chr3g0101671 25.109 458 288 18 7 420 4 450 7.54e-22 98.6
Msa1353760 MtrunA17_Chr4g0035921 25.100 502 296 19 1 443 1 481 1.58e-21 97.4
Msa1353760 MtrunA17_Chr5g0404881 29.464 224 149 5 6 223 7 227 1.90e-21 93.2
Msa1353760 MtrunA17_Chr1g0160851 24.580 476 304 16 9 445 8 467 2.70e-21 96.7
Msa1353760 MtrunA17_Chr3g0089381 33.750 160 105 1 206 365 34 192 7.49e-21 90.9
Msa1353760 MtrunA17_Chr2g0286091 24.370 476 305 15 35 468 41 503 8.95e-21 95.1
Msa1353760 MtrunA17_Chr5g0405001 23.617 470 307 14 10 443 28 481 1.05e-20 95.1
Msa1353760 MtrunA17_Chr5g0403351 23.591 479 322 16 1 443 1 471 1.59e-20 94.4
Msa1353760 MtrunA17_Chr6g0463561 31.875 160 100 3 5 159 12 167 2.18e-20 89.0
Msa1353760 MtrunA17_Chr6g0463541 39.423 104 63 0 361 464 2 105 2.19e-20 86.3
Msa1353760 MtrunA17_Chr1g0162801 24.641 487 295 18 1 435 1 467 3.76e-20 93.2
Msa1353760 MtrunA17_Chr6g0458561 23.279 494 297 19 8 443 28 497 5.48e-20 92.8
Msa1353760 MtrunA17_Chr8g0362731 25.907 386 240 15 95 448 15 386 5.56e-20 92.0
Msa1353760 MtrunA17_Chr8g0336361 23.266 447 276 13 64 448 95 536 5.70e-20 92.8
Msa1353760 MtrunA17_Chr4g0020041 23.711 485 305 16 1 439 1 466 6.48e-20 92.4
Msa1353760 MtrunA17_Chr3g0101631 24.342 456 294 17 1 420 1 441 6.71e-20 92.4
Msa1353760 MtrunA17_Chr5g0445421 23.908 435 287 13 11 424 91 502 1.29e-19 91.7
Msa1353760 MtrunA17_Chr3g0101751 25.607 453 290 20 8 421 10 454 2.11e-19 90.9
Msa1353760 MtrunA17_Chr3g0101701 24.318 440 300 14 11 420 14 450 2.25e-19 90.9
Msa1353760 MtrunA17_Chr5g0403321 24.520 469 282 17 27 443 26 474 4.09e-19 90.1
Msa1353760 MtrunA17_Chr5g0431511 24.888 446 290 16 35 443 33 470 4.71e-19 89.7
Msa1353760 MtrunA17_Chr8g0382901 22.926 458 305 16 4 436 2 436 6.01e-19 90.5
Msa1353760 MtrunA17_Chr8g0382901 22.323 439 303 15 28 436 485 915 6.53e-15 77.8
Msa1353760 MtrunA17_Chr3g0089291 27.615 239 165 7 70 306 1 233 7.62e-19 85.5
Msa1353760 MtrunA17_Chr3g0101621 23.947 451 288 17 8 420 3 436 8.19e-19 89.0
Msa1353760 MtrunA17_Chr3g0135841 30.738 244 141 7 213 439 271 503 8.49e-19 89.4
Msa1353760 MtrunA17_Chr3g0101611 24.017 458 299 17 24 444 27 472 1.58e-18 88.2
Msa1353760 MtrunA17_Chr3g0101581 23.799 437 294 15 16 420 18 447 1.83e-18 88.2
Msa1353760 MtrunA17_Chr1g0174451 23.093 472 300 13 1 424 1 457 2.02e-18 87.8
Msa1353760 MtrunA17_Chr8g0377341 25.546 458 284 20 7 424 38 478 2.35e-18 87.8
Msa1353760 MtrunA17_Chr3g0101711 21.854 453 317 16 1 420 1 449 4.29e-18 87.0
Msa1353760 MtrunA17_Chr5g0446151 24.779 452 294 17 21 439 27 465 4.70e-18 86.7
Msa1353760 MtrunA17_Chr3g0116741 23.701 481 302 18 1 439 22 479 7.73e-18 86.3
Msa1353760 MtrunA17_Chr1g0167321 25.664 452 297 17 1 420 1 445 8.69e-18 85.9
Msa1353760 MtrunA17_Chr7g0246221 22.432 477 309 16 10 439 5 467 1.83e-17 85.1
Msa1353760 MtrunA17_Chr3g0101801 23.868 486 305 21 1 435 1 472 2.02e-17 84.7
Msa1353760 MtrunA17_Chr3g0101831 24.558 452 293 18 10 421 5 448 2.14e-17 84.7
Msa1353760 MtrunA17_Chr4g0046351 26.210 248 158 8 227 455 245 486 2.50e-17 84.7
Msa1353760 MtrunA17_Chr5g0431501 24.887 442 295 14 35 443 33 470 2.54e-17 84.3
Msa1353760 MtrunA17_Chr5g0431461 24.887 442 295 14 35 443 33 470 2.54e-17 84.3
Msa1353760 MtrunA17_Chr3g0101821 21.983 464 326 15 7 439 7 465 3.13e-17 84.3
Msa1353760 MtrunA17_Chr8g0355961 23.480 477 282 19 3 424 7 455 3.42e-17 84.0
Msa1353760 MtrunA17_Chr3g0101761 22.766 470 314 18 8 435 3 465 4.40e-17 84.0
Msa1353760 MtrunA17_Chr5g0446161 23.617 470 312 15 3 439 9 464 5.51e-17 83.6
Msa1353760 MtrunA17_Chr6g0457421 28.099 242 157 6 214 443 244 480 6.16e-17 83.2
Msa1353760 MtrunA17_Chr4g0024771 22.426 437 304 16 11 420 17 445 6.36e-17 83.2
Msa1353760 MtrunA17_Chr3g0101651 22.973 444 301 15 11 420 14 450 6.62e-17 83.2
Msa1353760 MtrunA17_Chr3g0101601 23.282 451 297 16 8 420 3 442 7.27e-17 83.2
Msa1353760 MtrunA17_Chr8g0372251 22.482 427 283 11 33 420 33 450 1.25e-16 82.4
Msa1353760 MtrunA17_Chr5g0395381 21.627 467 294 16 5 439 10 436 1.37e-16 82.0
Msa1353760 MtrunA17_Chr6g0463801 24.419 430 273 15 27 420 29 442 1.66e-16 82.0
Msa1353760 MtrunA17_Chr4g0058191 22.822 482 317 16 9 451 1 466 1.76e-16 82.0
Msa1353760 MtrunA17_Chr8g0364081 21.961 510 329 16 4 450 20 523 2.09e-16 81.6
Msa1353760 MtrunA17_Chr8g0339331 24.464 466 298 19 24 443 27 484 2.13e-16 81.6
Msa1353760 MtrunA17_Chr1g0161641 40.789 76 44 1 366 440 13 88 2.26e-16 74.3
Msa1353760 MtrunA17_Chr3g0101661 23.348 454 309 15 1 420 1 449 2.64e-16 81.3
Msa1353760 MtrunA17_Chr1g0160861 25.000 228 158 5 228 446 86 309 3.41e-16 79.7
Msa1353760 MtrunA17_Chr7g0218611 23.568 454 304 13 25 443 23 468 3.43e-16 80.9
Msa1353760 MtrunA17_Chr1g0207841 27.132 258 152 8 220 450 241 489 4.19e-16 80.9
Msa1353760 MtrunA17_Chr5g0445441 23.362 458 299 15 3 424 49 490 4.91e-16 80.5
Msa1353760 MtrunA17_Chr3g0101691 22.500 440 308 13 11 420 14 450 5.90e-16 80.1
Msa1353760 MtrunA17_Chr5g0400391 36.667 90 56 1 384 472 2 91 6.25e-16 73.6
Msa1353760 MtrunA17_Chr3g0101571 23.266 447 297 17 11 420 7 444 6.53e-16 80.1
Msa1353760 MtrunA17_Chr2g0314721 24.752 505 317 19 6 469 15 497 6.68e-16 80.1
Msa1353760 MtrunA17_Chr5g0401681 22.727 484 305 15 5 445 6 463 6.78e-16 80.1
Msa1353760 MtrunA17_Chr2g0280261 24.424 434 284 14 24 425 23 444 7.78e-16 79.7
Msa1353760 MtrunA17_Chr7g0258221 23.377 462 294 14 9 424 8 455 9.50e-16 79.7
Msa1353760 MtrunA17_Chr5g0445381 23.620 453 287 16 11 424 48 480 1.19e-15 79.3
Msa1353760 MtrunA17_Chr4g0058201 22.517 453 309 17 32 451 25 468 1.92e-15 78.6
Msa1353760 MtrunA17_Chr3g0128461 22.673 419 285 14 59 447 92 501 2.37e-15 78.6
Msa1353760 MtrunA17_Chr4g0046321 25.306 245 160 8 227 453 245 484 2.58e-15 78.2
Msa1353760 MtrunA17_Chr4g0046331 25.403 248 158 8 227 453 245 486 2.95e-15 78.2
Msa1353760 MtrunA17_Chr3g0116681 23.355 471 326 16 1 443 8 471 3.23e-15 78.2
Msa1353760 MtrunA17_Chr4g0058281 21.915 470 321 15 4 439 20 477 3.40e-15 77.8
Msa1353760 MtrunA17_Chr2g0296651 22.826 460 293 16 5 424 5 442 6.30e-15 77.0
Msa1353760 MtrunA17_Chr3g0101721 23.176 466 320 15 12 445 14 473 9.79e-15 76.6
Msa1353760 MtrunA17_Chr8g0390881 21.121 464 317 15 10 436 14 465 1.33e-14 76.3
Msa1353760 MtrunA17_Chr4g0039901 22.494 449 294 15 30 439 30 463 1.71e-14 75.9
Msa1353760 MtrunA17_Chr1g0161661 39.759 83 49 1 384 465 14 96 3.79e-14 68.2
Msa1353760 MtrunA17_Chr5g0401691 21.766 487 303 16 5 445 26 480 5.60e-14 74.3
Msa1353760 MtrunA17_Chr7g0215181 27.572 243 156 7 215 443 246 482 1.15e-13 73.2
Msa1353760 MtrunA17_Chr5g0436991 29.661 118 78 2 194 310 43 156 1.24e-13 68.6
Msa1353760 MtrunA17_Chr2g0288661 21.739 437 286 13 43 448 85 496 2.15e-13 72.4
Msa1353760 MtrunA17_Chr5g0396521 23.963 217 127 5 264 446 333 545 2.48e-13 72.4
Msa1353760 MtrunA17_Chr1g0176831 23.307 502 322 17 6 466 34 513 2.96e-13 72.0
Msa1353760 MtrunA17_Chr0c19g0493771 22.467 227 157 5 229 444 403 621 3.24e-13 72.0
Msa1353760 MtrunA17_Chr1g0200951 21.465 396 268 12 80 440 109 496 5.95e-13 70.9
Msa1353760 MtrunA17_Chr8g0344191 23.011 465 287 19 10 424 44 487 6.02e-13 70.9
Msa1353760 MtrunA17_Chr4g0030711 26.275 255 160 8 220 450 240 490 6.85e-13 70.9
Msa1353760 MtrunA17_Chr2g0313831 23.333 360 244 9 112 443 134 489 8.80e-13 70.5
Msa1353760 MtrunA17_Chr8g0370641 26.606 218 146 6 232 439 272 485 1.58e-12 69.7
Msa1353760 MtrunA17_Chr8g0354531 23.214 392 259 13 104 461 254 637 1.63e-12 69.7
Msa1353760 MtrunA17_Chr5g0431641 23.007 439 298 15 13 420 16 445 2.10e-12 69.3
Msa1353760 MtrunA17_Chr5g0395321 26.126 222 148 6 228 439 246 461 2.50e-12 68.9
Msa1353760 MtrunA17_Chr8g0387101 23.239 426 281 13 59 444 58 477 2.53e-12 68.9
Msa1353760 MtrunA17_Chr7g0218601 25.571 219 150 4 232 443 255 467 2.65e-12 68.9
Msa1353760 MtrunA17_Chr2g0313761 21.429 434 291 12 43 448 78 489 2.92e-12 68.9
Msa1353760 MtrunA17_Chr5g0419451 22.803 421 286 15 51 440 73 485 3.06e-12 68.6
Msa1353760 MtrunA17_Chr1g0193811 21.698 424 272 13 81 463 106 510 3.55e-12 68.6
Msa1353760 MtrunA17_Chr1g0179811 22.348 443 293 14 60 462 101 532 3.60e-12 68.6
Msa1353760 MtrunA17_Chr3g0089371 26.316 152 100 5 23 165 28 176 3.63e-12 65.9
Msa1353760 MtrunA17_Chr7g0246181 24.528 477 311 17 1 439 1 466 4.07e-12 68.2
Msa1353760 MtrunA17_Chr8g0370651 26.606 218 146 6 232 439 276 489 4.41e-12 68.2
Msa1353760 MtrunA17_Chr6g0484811 21.941 474 320 17 8 443 12 473 4.53e-12 68.2
Msa1353760 MtrunA17_Chr1g0161651 23.390 295 165 7 27 267 35 322 5.04e-12 67.0
Msa1353760 MtrunA17_Chr4g0058211 25.532 188 131 3 270 451 10 194 5.73e-12 65.1
Msa1353760 MtrunA17_Chr4g0039391 24.229 227 161 6 227 446 251 473 7.57e-12 67.4
Msa1353760 MtrunA17_Chr5g0431671 21.429 420 295 13 30 420 33 446 7.68e-12 67.4
Msa1353760 MtrunA17_Chr7g0262111 24.814 403 271 14 67 447 90 482 7.95e-12 67.4
Msa1353760 MtrunA17_Chr2g0313801 22.102 371 248 11 110 448 133 494 8.05e-12 67.4
Msa1353760 MtrunA17_Chr5g0446131 23.529 425 268 14 43 433 81 482 8.68e-12 67.4
Msa1353760 MtrunA17_Chr4g0017411 26.425 193 136 4 233 424 243 430 8.86e-12 67.0
Msa1353760 MtrunA17_Chr4g0076161 21.250 480 316 15 6 443 12 471 1.25e-11 66.6
Msa1353760 MtrunA17_Chr1g0164211 24.454 229 158 7 228 446 242 465 1.60e-11 66.2
Msa1353760 MtrunA17_Chr2g0280011 29.348 184 115 5 280 450 9 190 1.81e-11 63.5
Msa1353760 MtrunA17_Chr1g0184461 21.756 501 293 21 8 441 5 473 2.18e-11 65.9
Msa1353760 MtrunA17_Chr4g0063221 22.145 429 297 13 59 459 86 505 2.22e-11 65.9
Msa1353760 MtrunA17_Chr7g0246151 26.244 221 151 6 227 439 250 466 2.25e-11 65.9
Msa1353760 MtrunA17_Chr2g0296661 26.020 196 141 3 231 425 256 448 2.39e-11 65.9
Msa1353760 MtrunA17_Chr3g0086691 27.642 246 158 8 213 443 234 474 3.84e-11 65.1
Msa1353760 MtrunA17_Chr4g0053621 22.059 476 280 20 7 425 6 447 3.89e-11 65.1
Msa1353760 MtrunA17_Chr4g0030701 25.896 251 159 7 220 447 238 484 5.55e-11 64.7
Msa1353760 MtrunA17_Chr4g0046631 23.007 439 287 22 25 420 35 465 5.60e-11 64.7
Msa1353760 MtrunA17_Chr3g0086661 28.745 247 154 9 213 443 234 474 6.17e-11 64.7
Msa1353760 MtrunA17_Chr4g0052881 23.116 199 145 4 228 424 251 443 8.00e-11 64.3
Msa1353760 MtrunA17_Chr3g0086651 28.049 246 157 8 213 443 234 474 9.83e-11 63.9
Msa1353760 MtrunA17_Chr2g0313791 21.884 361 237 9 120 448 142 489 9.86e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353760 AT3G19270.2 66.517 445 145 3 27 470 26 467 0.0 627
Msa1353760 AT3G19270.1 66.988 415 133 3 27 440 26 437 0.0 594
Msa1353760 AT4G19230.1 55.342 468 194 5 9 469 3 462 0.0 554
Msa1353760 AT5G45340.1 56.208 443 186 3 27 469 28 462 0.0 550
Msa1353760 AT4G19230.2 53.533 467 200 7 9 467 3 460 0.0 526
Msa1353760 AT5G45340.2 56.386 415 173 3 27 441 28 434 0.0 522
Msa1353760 AT2G29090.2 54.628 443 190 5 29 466 43 479 7.30e-174 498
Msa1353760 AT2G29090.1 54.628 443 190 5 29 466 43 479 7.30e-174 498
Msa1353760 AT2G29090.3 53.590 390 170 5 82 466 1 384 1.95e-146 424
Msa1353760 AT2G29090.4 51.237 283 134 3 29 310 43 322 1.98e-92 285
Msa1353760 AT1G05160.2 33.559 444 280 8 35 465 45 486 3.81e-84 268
Msa1353760 AT1G05160.1 33.559 444 280 8 35 465 45 486 3.81e-84 268
Msa1353760 AT2G32440.2 32.143 476 303 8 11 468 13 486 2.45e-80 258
Msa1353760 AT2G32440.1 32.143 476 303 8 11 468 13 486 2.45e-80 258
Msa1353760 AT5G05690.1 33.184 446 280 7 5 439 1 439 1.42e-72 237
Msa1353760 AT1G19630.1 33.053 475 301 10 5 468 6 474 4.70e-71 233
Msa1353760 AT5G38970.1 29.412 442 300 8 9 446 10 443 2.02e-70 231
Msa1353760 AT1G19630.3 33.184 446 282 9 5 440 6 445 6.88e-69 227
Msa1353760 AT3G30180.1 31.643 414 275 7 35 445 34 442 2.21e-68 226
Msa1353760 AT5G36110.1 33.259 451 279 10 35 470 34 477 1.15e-66 222
Msa1353760 AT3G50660.1 31.048 496 273 13 27 468 31 511 3.79e-65 219
Msa1353760 AT3G13730.2 31.591 421 268 10 34 440 50 464 3.01e-64 215
Msa1353760 AT1G12740.1 28.571 448 299 7 9 444 8 446 4.94e-64 215
Msa1353760 AT3G13730.1 31.591 421 268 10 34 440 50 464 5.68e-64 215
Msa1353760 AT5G38970.3 29.723 397 269 7 9 403 10 398 2.38e-63 212
Msa1353760 AT4G36380.1 31.829 421 266 11 35 439 69 484 2.27e-62 212
Msa1353760 AT1G12740.2 28.194 454 299 8 9 444 8 452 2.85e-62 210
Msa1353760 AT5G05690.2 32.258 403 259 5 5 400 1 396 3.68e-62 208
Msa1353760 AT1G12740.4 28.414 454 298 8 9 444 8 452 5.13e-62 210
Msa1353760 AT1G19630.2 33.088 408 257 9 5 402 6 407 1.25e-58 199
Msa1353760 AT2G42850.1 30.000 480 310 13 4 465 8 479 6.78e-58 199
Msa1353760 AT1G55940.1 28.982 452 300 12 4 439 17 463 2.30e-56 194
Msa1353760 AT5G14400.3 30.769 416 247 13 40 441 1 389 5.15e-56 191
Msa1353760 AT1G55940.2 28.446 457 306 12 4 444 17 468 6.40e-56 194
Msa1353760 AT5G14400.2 30.695 417 250 12 40 443 1 391 1.32e-55 191
Msa1353760 AT5G38970.2 28.650 363 250 6 87 445 4 361 1.48e-52 182
Msa1353760 AT5G38970.4 28.650 363 250 6 87 445 4 361 1.48e-52 182
Msa1353760 AT1G78490.1 29.551 423 284 8 33 444 33 452 7.91e-52 182
Msa1353760 AT5G48000.2 28.477 453 297 12 30 465 30 472 2.11e-51 181
Msa1353760 AT5G48000.4 28.477 453 297 12 30 465 30 472 2.11e-51 181
Msa1353760 AT5G48000.7 28.477 453 297 12 30 465 30 472 2.11e-51 181
Msa1353760 AT5G48000.6 28.477 453 297 12 30 465 30 472 2.11e-51 181
Msa1353760 AT5G48000.5 28.477 453 297 12 30 465 30 472 2.11e-51 181
Msa1353760 AT5G48000.3 28.477 453 297 12 30 465 30 472 2.11e-51 181
Msa1353760 AT1G65670.1 29.864 442 284 11 5 435 8 434 2.92e-51 181
Msa1353760 AT5G48000.1 28.667 450 300 12 30 465 71 513 5.93e-51 181
Msa1353760 AT1G73340.1 26.786 448 300 7 5 440 21 452 2.55e-50 179
Msa1353760 AT3G44970.1 28.873 426 287 9 30 443 30 451 5.75e-50 177
Msa1353760 AT3G50660.2 29.782 413 243 10 25 400 29 431 1.08e-49 176
Msa1353760 AT4G15393.2 29.120 443 287 13 6 435 9 437 1.66e-49 176
Msa1353760 AT5G05690.3 32.515 326 206 6 121 439 2 320 2.20e-49 173
Msa1353760 AT4G15300.2 29.241 448 283 16 5 435 8 438 6.97e-47 169
Msa1353760 AT4G15300.3 29.213 445 281 16 8 435 1 428 1.78e-46 168
Msa1353760 AT4G15396.3 27.149 442 299 11 6 435 9 439 6.80e-44 160
Msa1353760 AT4G15396.1 27.149 442 299 11 6 435 9 439 7.61e-44 161
Msa1353760 AT1G12740.3 26.087 368 254 6 9 367 8 366 1.08e-42 155
Msa1353760 AT1G78490.2 29.134 381 251 8 33 401 33 406 2.43e-42 155
Msa1353760 AT5G14400.1 29.380 371 227 11 91 452 2 346 7.58e-42 153
Msa1353760 AT4G15300.1 27.837 467 281 18 8 435 1 450 1.65e-40 152
Msa1353760 AT4G15393.1 27.901 405 269 12 6 401 9 399 1.03e-39 148
Msa1353760 AT4G36380.2 30.029 343 223 9 35 365 69 406 3.07e-39 147
Msa1353760 AT5G14400.4 29.204 339 218 11 40 365 1 330 1.95e-38 143
Msa1353760 AT5G36110.2 29.745 353 228 8 35 374 34 379 1.70e-37 142
Msa1353760 AT4G15396.2 25.901 444 281 12 6 435 9 418 2.32e-36 140
Msa1353760 AT4G15396.4 25.990 404 280 10 6 401 9 401 2.25e-35 136
Msa1353760 AT2G42850.2 28.792 389 251 12 4 374 8 388 5.27e-35 135
Msa1353760 AT4G15310.1 27.171 449 304 12 4 440 8 445 1.20e-34 135
Msa1353760 AT5G36130.1 46.429 140 73 2 333 470 1 140 3.45e-32 120
Msa1353760 AT1G11680.1 23.950 476 325 15 8 461 16 476 4.26e-30 123
Msa1353760 AT4G15393.3 25.310 403 247 11 6 400 9 365 4.57e-30 120
Msa1353760 AT3G30290.1 25.269 372 263 8 71 435 5 368 2.30e-29 119
Msa1353760 AT4G13770.1 25.684 475 313 14 1 443 1 467 4.66e-28 117
Msa1353760 AT5G36140.1 27.465 284 189 9 35 308 33 309 1.18e-24 104
Msa1353760 AT5G25120.1 26.810 511 303 23 4 464 2 491 7.48e-22 98.6
Msa1353760 AT3G44970.2 25.150 334 237 8 30 354 30 359 9.95e-22 97.1
Msa1353760 AT2G45560.1 22.803 478 308 16 8 439 9 471 9.64e-21 95.5
Msa1353760 AT5G67310.1 25.474 475 308 21 1 442 8 469 1.58e-20 94.7
Msa1353760 AT5G25140.1 26.522 460 272 19 4 420 2 438 5.48e-20 93.2
Msa1353760 AT5G57220.1 24.160 476 308 14 1 444 1 455 6.78e-20 92.8
Msa1353760 AT5G25130.1 26.695 472 294 19 4 439 2 457 2.19e-19 91.3
Msa1353760 AT5G04330.1 23.982 442 286 14 36 436 33 465 7.46e-19 89.7
Msa1353760 AT4G37370.1 25.000 228 163 5 228 453 247 468 1.49e-17 85.5
Msa1353760 AT5G24910.1 20.968 434 297 12 44 439 76 501 4.99e-17 84.3
Msa1353760 AT4G37320.1 25.000 220 159 3 228 446 248 462 6.56e-17 83.6
Msa1353760 AT4G37340.1 26.250 240 161 6 212 445 232 461 9.46e-17 83.2
Msa1353760 AT1G50520.1 23.434 495 325 17 1 451 6 490 1.28e-16 82.8
Msa1353760 AT2G45570.1 25.424 472 294 19 12 439 15 472 1.48e-16 82.8
Msa1353760 AT2G34490.1 22.090 421 288 15 43 437 45 451 1.58e-16 82.4
Msa1353760 AT4G37400.1 26.872 227 151 5 207 425 223 442 2.08e-16 82.0
Msa1353760 AT1G74110.1 22.041 490 320 16 9 445 31 511 2.22e-16 82.0
Msa1353760 AT4G36220.1 23.125 480 307 11 2 436 14 476 3.17e-16 81.6
Msa1353760 AT2G45580.1 23.272 434 270 16 45 432 48 464 5.30e-16 80.9
Msa1353760 AT2G45580.2 26.180 233 154 6 213 432 83 310 5.44e-16 79.7
Msa1353760 AT4G37430.1 23.044 473 309 18 10 444 9 464 6.18e-16 80.5
Msa1353760 AT2G26170.2 29.707 239 142 7 213 435 173 401 7.10e-16 80.1
Msa1353760 AT3G20940.1 22.086 489 330 13 19 466 26 504 7.26e-16 80.5
Msa1353760 AT2G26170.1 29.707 239 142 7 213 435 256 484 1.12e-15 80.1
Msa1353760 AT4G37410.1 26.872 227 151 7 213 431 230 449 1.71e-15 79.3
Msa1353760 AT4G27710.1 26.494 385 232 15 116 464 143 512 2.60e-15 79.0
Msa1353760 AT2G28850.1 22.190 347 239 8 109 437 114 447 2.85e-15 78.6
Msa1353760 AT2G34500.1 22.626 358 224 14 109 437 113 446 4.69e-15 77.8
Msa1353760 AT2G24180.1 23.585 424 285 13 30 420 31 448 5.47e-15 77.8
Msa1353760 AT1G66540.2 25.112 223 154 5 228 445 75 289 7.72e-15 75.9
Msa1353760 AT4G37310.1 25.207 242 174 4 220 454 242 483 8.33e-15 77.0
Msa1353760 AT1G66540.1 25.112 223 154 5 228 445 134 348 1.19e-14 75.9
Msa1353760 AT3G28740.1 25.514 243 172 5 205 444 232 468 2.16e-14 75.9
Msa1353760 AT4G37360.1 27.322 183 127 3 265 445 283 461 2.37e-14 75.9
Msa1353760 AT2G45550.1 26.638 229 144 7 219 439 259 471 2.40e-14 75.9
Msa1353760 AT3G53130.1 21.981 414 279 13 67 444 108 513 1.17e-13 73.6
Msa1353760 AT5G57260.1 21.882 425 298 12 28 420 23 445 1.62e-13 73.2
Msa1353760 AT4G15110.1 23.502 217 128 3 264 446 341 553 2.30e-13 72.8
Msa1353760 AT3G52970.2 24.167 480 304 13 13 439 19 491 2.75e-13 72.4
Msa1353760 AT4G37330.1 24.658 219 159 4 228 445 245 458 6.82e-13 71.2
Msa1353760 AT2G22330.1 26.180 233 151 9 232 451 288 512 9.03e-13 70.9
Msa1353760 AT2G22330.2 26.180 233 151 9 232 451 311 535 9.30e-13 70.9
Msa1353760 AT3G52970.1 23.820 466 309 13 13 439 19 477 1.02e-12 70.5
Msa1353760 AT3G53300.1 22.851 442 269 16 34 424 27 447 2.12e-12 69.7
Msa1353760 AT3G26160.1 23.944 213 150 4 218 420 236 446 2.53e-12 69.3
Msa1353760 AT1G64940.1 28.191 188 126 3 267 447 298 483 3.45e-12 68.9
Msa1353760 AT2G23190.1 23.171 246 180 5 203 445 266 505 4.52e-12 68.6
Msa1353760 AT5G07990.1 21.532 483 322 17 7 446 5 473 5.89e-12 68.2
Msa1353760 AT3G26290.2 23.009 452 265 18 22 420 34 455 6.32e-12 68.2
Msa1353760 AT3G26290.1 24.027 437 279 17 22 420 21 442 7.67e-12 67.8
Msa1353760 AT2G46950.1 23.077 416 274 13 64 447 146 547 1.13e-11 67.4
Msa1353760 AT2G23220.1 21.818 220 164 4 228 445 263 476 1.14e-11 67.4
Msa1353760 AT5G36220.2 23.423 222 162 5 227 446 107 322 1.37e-11 66.2
Msa1353760 AT5G36220.1 23.423 222 162 5 227 446 253 468 1.94e-11 66.6
Msa1353760 AT5G42580.1 22.273 440 282 14 66 466 70 488 4.91e-11 65.5
Msa1353760 AT3G48520.1 21.907 493 302 19 5 441 5 470 6.26e-11 65.1

Find 122 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAATGGCATGAAAGTATT+TGG 0.142965 tig0014001:-9796 Msa1353760:intergenic
GGCATTGCTTTCCACCCTTT+TGG 0.171251 tig0014001:-9597 Msa1353760:intergenic
AGGGCTAAGGCTTCAATTTC+AGG 0.177274 tig0014001:-7632 Msa1353760:intergenic
GCTTATACCTTATAGGTAAT+TGG 0.207342 tig0014001:-9107 Msa1353760:intergenic
ATTAACTGCTTATACCTTAT+AGG 0.209223 tig0014001:-9114 Msa1353760:intergenic
AAGAGCTAAAGAAGAATTAT+TGG 0.218720 tig0014001:+8113 Msa1353760:CDS
CCAAATGATGGATCATAATA+AGG 0.218766 tig0014001:-9867 Msa1353760:intergenic
AGCCAAAGTTGAATCCATTT+TGG 0.251756 tig0014001:-6696 Msa1353760:intergenic
TCAGCTACTGCTTCTCTAAA+TGG 0.254249 tig0014001:-9341 Msa1353760:intergenic
GAAATTGGAGATAACATTAT+TGG 0.259111 tig0014001:+8424 Msa1353760:CDS
TTGGAGAAGAAGAAAAGATT+TGG 0.286221 tig0014001:-6866 Msa1353760:intergenic
AGAAGAAAAGATTTGGGTCT+TGG 0.292356 tig0014001:-6859 Msa1353760:intergenic
ATATTATCTGATGATGAAAT+TGG 0.294172 tig0014001:+8409 Msa1353760:CDS
TTTACACATTCGAGAAGTTT+TGG 0.312887 tig0014001:-8517 Msa1353760:intergenic
CCCTTTCCACCATCAAATCT+TGG 0.312974 tig0014001:+7651 Msa1353760:CDS
ATGGTAAACTACAGCTGAAT+TGG 0.316888 tig0014001:+9066 Msa1353760:CDS
GTTCTAATAATACACCAAAA+TGG 0.319205 tig0014001:+6682 Msa1353760:exon
TAAATAGAGTCAAGGGGATT+TGG 0.319677 tig0014001:+10790 Msa1353760:three_prime_UTR
ATTAGAACAAGAATCTAATA+AGG 0.320066 tig0014001:-6667 Msa1353760:intergenic
AAAGAACATAAATGAAAATA+AGG 0.325706 tig0014001:-6744 Msa1353760:intergenic
CCTTATTATGATCCATCATT+TGG 0.343940 tig0014001:+9867 Msa1353760:CDS
ATATTCAAGACGAACATTCT+TGG 0.346956 tig0014001:+7404 Msa1353760:CDS
AAACATGCCAATTACCTATA+AGG 0.352173 tig0014001:+9100 Msa1353760:CDS
GGCATGAAAGTATTTGGTTT+TGG 0.356492 tig0014001:-9790 Msa1353760:intergenic
CCAAATACTTTCATGCCATT+TGG 0.359912 tig0014001:+9796 Msa1353760:CDS
CCATTCAAAGGCAATGGAAA+TGG 0.361111 tig0014001:-10464 Msa1353760:intergenic
CCTTTCCACCATCAAATCTT+GGG 0.366162 tig0014001:+7652 Msa1353760:CDS
ATCATTTGGTCGTCAAGTTT+AGG 0.368718 tig0014001:+9881 Msa1353760:CDS
CTTGAAGGGTTGAATTTATG+AGG 0.372482 tig0014001:-9663 Msa1353760:intergenic
CACCAAAATGGATTCAACTT+TGG 0.379629 tig0014001:+6694 Msa1353760:exon
CCTCGATTCACTTCGCAACT+TGG 0.379709 tig0014001:+7607 Msa1353760:CDS
TCATTTCCAACTCAAATTCC+TGG 0.382346 tig0014001:+8157 Msa1353760:CDS
CCATTTCCATTGCCTTTGAA+TGG 0.384022 tig0014001:+10464 Msa1353760:CDS
TCACACTGTGGGATTCAATA+TGG 0.388946 tig0014001:+10440 Msa1353760:CDS
AAACTTCCTCCTGGTTCAAT+GGG 0.390178 tig0014001:+6800 Msa1353760:CDS
AAGATTGGAAAAGCCTCAAC+AGG 0.394952 tig0014001:+10716 Msa1353760:three_prime_UTR
TGGAGAAGAAGAAAAGATTT+GGG 0.403165 tig0014001:-6865 Msa1353760:intergenic
GAAGAAAAGATTTGGGTCTT+GGG 0.404022 tig0014001:-6858 Msa1353760:intergenic
AAAAGCAAAGAACGTTTGAT+TGG 0.407013 tig0014001:+7512 Msa1353760:CDS
AAAACTTCCTCCTGGTTCAA+TGG 0.407546 tig0014001:+6799 Msa1353760:CDS
ATTCAACCCTTCAAGATTTG+AGG 0.408792 tig0014001:+9671 Msa1353760:CDS
AAAAGATTAATTTATGGCTA+TGG 0.410298 tig0014001:-10586 Msa1353760:intergenic
CTTTGAATGGACTCCCAGCC+AGG 0.412377 tig0014001:+10477 Msa1353760:CDS
TGGCAATGAGCTTGCTAAGC+TGG 0.415341 tig0014001:+9840 Msa1353760:CDS
GGTCTTGGGAGTAGAGTTGA+AGG 0.415849 tig0014001:-6844 Msa1353760:intergenic
GGAAATAATTAGTGAGAGGA+AGG 0.418556 tig0014001:+8315 Msa1353760:CDS
ATCATCACCCCAAGATTTGA+TGG 0.427411 tig0014001:-7660 Msa1353760:intergenic
GTGAGTACCATTTGCGTTTG+AGG 0.428828 tig0014001:+7561 Msa1353760:CDS
ATTCGTACCTCAAATCTTGA+AGG 0.438046 tig0014001:-9678 Msa1353760:intergenic
TTTAGCTCTTCCCTCAACCT+TGG 0.449838 tig0014001:-8100 Msa1353760:intergenic
CAAATGATGGATCATAATAA+GGG 0.450882 tig0014001:-9866 Msa1353760:intergenic
GATTCTCTCCAACACCTGGC+TGG 0.454938 tig0014001:-10491 Msa1353760:intergenic
TAATTTATGGCTATGGAAAG+TGG 0.458488 tig0014001:-10579 Msa1353760:intergenic
TGAAGGGTTTGTCCTATGTA+AGG 0.459592 tig0014001:-6827 Msa1353760:intergenic
GGGTTGAATTTATGAGGCTC+TGG 0.474079 tig0014001:-9657 Msa1353760:intergenic
CCAGGATTCCTAATCCCAAA+AGG 0.474118 tig0014001:+9582 Msa1353760:intron
CATTCAAAGGCAATGGAAAT+GGG 0.474896 tig0014001:-10463 Msa1353760:intergenic
TGTGTACCAGGAATTTGAGT+TGG 0.476181 tig0014001:-8163 Msa1353760:intergenic
CCAAGATTTGATGGTGGAAA+GGG 0.481164 tig0014001:-7651 Msa1353760:intergenic
AACACAAAACGTGCAGCTTC+AGG 0.483985 tig0014001:-7452 Msa1353760:intergenic
ATCAAATCTTGGGGTGATGA+TGG 0.495039 tig0014001:+7662 Msa1353760:CDS
ACTTTCATGCCATTTGGTAG+TGG 0.497443 tig0014001:+9802 Msa1353760:CDS
AGCTGTTTCTTGAATTGGAA+AGG 0.501218 tig0014001:+8373 Msa1353760:CDS
TTCCTCCTGGTTCAATGGGG+TGG 0.506411 tig0014001:+6804 Msa1353760:CDS
GCAATCTAGAGCCAAGGTTG+AGG 0.509932 tig0014001:+8089 Msa1353760:CDS
AGCTTAGCAAGCTCATTGCC+AGG 0.510940 tig0014001:-9838 Msa1353760:intergenic
TAAGCTTCCTCAAACGCAAA+TGG 0.513067 tig0014001:-7568 Msa1353760:intergenic
ATGGACTCCCAGCCAGGTGT+TGG 0.513265 tig0014001:+10483 Msa1353760:CDS
TAAACTTGACGACCAAATGA+TGG 0.513374 tig0014001:-9879 Msa1353760:intergenic
TTGAATTGGAAAGGAGAAGG+AGG 0.514480 tig0014001:+8382 Msa1353760:CDS
CAATCTAGAGCCAAGGTTGA+GGG 0.517826 tig0014001:+8090 Msa1353760:CDS
AAAATAAGGTAAGAAGAAAG+AGG 0.522546 tig0014001:-6730 Msa1353760:intergenic
ATTCTCTCCAACACCTGGCT+GGG 0.529923 tig0014001:-10490 Msa1353760:intergenic
CCCAAGATTTGATGGTGGAA+AGG 0.538660 tig0014001:-7652 Msa1353760:intergenic
TTCTTGAATTGGAAAGGAGA+AGG 0.539562 tig0014001:+8379 Msa1353760:CDS
TTTGATGGTGGAAAGGGCTA+AGG 0.541061 tig0014001:-7645 Msa1353760:intergenic
GCAAATGGTACTCACCTTGG+TGG 0.541284 tig0014001:-7553 Msa1353760:intergenic
TTTGATATAAATAGAGTCAA+GGG 0.543565 tig0014001:+10783 Msa1353760:three_prime_UTR
GTCTTGGGAGTAGAGTTGAA+GGG 0.543626 tig0014001:-6843 Msa1353760:intergenic
GTGAAGGCAAGAGAGAAACT+TGG 0.544371 tig0014001:+8280 Msa1353760:intron
GGGAGTCCATTCAAAGGCAA+TGG 0.544618 tig0014001:-10470 Msa1353760:intergenic
TGCTTTGTAGGCTGAGCAGA+AGG 0.545509 tig0014001:+9025 Msa1353760:intron
TGAAGGAAATAATTAGTGAG+AGG 0.545555 tig0014001:+8311 Msa1353760:CDS
TTTGGTATATAGGTTGGAAG+TGG 0.546819 tig0014001:+10412 Msa1353760:intron
CCACAGCTACTGTCATGACA+TGG 0.547135 tig0014001:+8470 Msa1353760:CDS
GCAATTCACAAGGAAAATGA+TGG 0.548553 tig0014001:+9047 Msa1353760:CDS
AAAACTTCTCGAATGTGTAA+AGG 0.553456 tig0014001:+8519 Msa1353760:CDS
GCATGTACTCCACTACCAAA+TGG 0.553843 tig0014001:-9811 None:intergenic
TGATAACTCCAGATTAACAC+TGG 0.555592 tig0014001:+6596 None:intergenic
GGTAGATTCTCTCCAACACC+TGG 0.557087 tig0014001:-10495 Msa1353760:intergenic
ACAAGTGCAAAACTTCCTCC+TGG 0.564113 tig0014001:+6791 Msa1353760:CDS
TTCGTACCTCAAATCTTGAA+GGG 0.564125 tig0014001:-9677 Msa1353760:intergenic
AACGCAAATGGTACTCACCT+TGG 0.565917 tig0014001:-7556 Msa1353760:intergenic
TAAGGCCACCCCATTGAACC+AGG 0.567074 tig0014001:-6809 Msa1353760:intergenic
AATTATTGGATTGTTGACAA+TGG 0.572734 tig0014001:+8127 Msa1353760:CDS
TCAATGGGGTGGCCTTACAT+AGG 0.572822 tig0014001:+6815 Msa1353760:CDS
TGGATGTAAGTGTGTGATGT+TGG 0.574017 tig0014001:+7424 Msa1353760:CDS
CAGGATTCCTAATCCCAAAA+GGG 0.575886 tig0014001:+9583 Msa1353760:intron
GAAAGATACATCCCCTGTTG+AGG 0.578717 tig0014001:-10729 Msa1353760:intergenic
ATTTGATATAAATAGAGTCA+AGG 0.579853 tig0014001:+10782 Msa1353760:three_prime_UTR
GTATATAGGTTGGAAGTGGT+AGG 0.592193 tig0014001:+10416 Msa1353760:intron
CAAGTTGCGAAGTGAATCGA+GGG 0.600200 tig0014001:-7606 Msa1353760:intergenic
TGTGTTGGAGAGCATGAGAA+TGG 0.607491 tig0014001:+9301 Msa1353760:CDS
TTGATATAAATAGAGTCAAG+GGG 0.607883 tig0014001:+10784 Msa1353760:three_prime_UTR
CTTTCCACCATCAAATCTTG+GGG 0.609532 tig0014001:+7653 Msa1353760:CDS
TGATGAATATTTCTGAACAG+TGG 0.615557 tig0014001:-9618 Msa1353760:intergenic
AGTGGAGTACATGCTTGTCC+TGG 0.616452 tig0014001:+9820 Msa1353760:CDS
CCAAGTTGCGAAGTGAATCG+AGG 0.629437 tig0014001:-7607 Msa1353760:intergenic
CTGGCTGGGAGTCCATTCAA+AGG 0.643521 tig0014001:-10476 Msa1353760:intergenic
GATTCCTAATCCCAAAAGGG+TGG 0.645660 tig0014001:+9586 Msa1353760:CDS
CCATGTCATGACAGTAGCTG+TGG 0.646176 tig0014001:-8470 Msa1353760:intergenic
TGAGCAGAAGGCAATTCACA+AGG 0.649363 tig0014001:+9037 Msa1353760:CDS
GTTTGAGGAAGCTTATTCAG+AGG 0.650161 tig0014001:+7576 Msa1353760:CDS
CACAGCTACTGTCATGACAT+GGG 0.650868 tig0014001:+8471 Msa1353760:CDS
AAGTGGTAGGATCACACTGT+GGG 0.657629 tig0014001:+10429 Msa1353760:CDS
AGATTGGAAAAGCCTCAACA+GGG 0.658055 tig0014001:+10717 Msa1353760:three_prime_UTR
GTAGCTGATGTAGAGTACAA+AGG 0.662288 tig0014001:+9356 Msa1353760:CDS
ATCACCCCAAGATTTGATGG+TGG 0.682987 tig0014001:-7657 Msa1353760:intergenic
AACTTCCTCCTGGTTCAATG+GGG 0.687690 tig0014001:+6801 Msa1353760:CDS
GATTGGAAAAGCCTCAACAG+GGG 0.706428 tig0014001:+10718 Msa1353760:three_prime_UTR
GAAGTGGTAGGATCACACTG+TGG 0.723901 tig0014001:+10428 Msa1353760:CDS
GGCCACCCCATTGAACCAGG+AGG 0.736013 tig0014001:-6806 Msa1353750:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTGCTTATATTAAAAAA+CGG + tig0014001:7125-7144 Msa1353760:intron 10.0%
!!! TAATATATTAATTTTAGGTA+CGG + tig0014001:7377-7396 Msa1353760:intron 10.0%
!!! ATTTAACTTAGTTTAATTTT+TGG + tig0014001:8567-8586 Msa1353760:intron 10.0%
!! CATTTAATTAAAAAAATGTA+TGG - tig0014001:10246-10265 Msa1353760:intergenic 10.0%
!! AAAGAAAAAAGATTAATTTA+TGG - tig0014001:10595-10614 Msa1353760:intergenic 10.0%
!!! TCAACAATTGTTTTTATATT+AGG + tig0014001:6634-6653 Msa1353760:five_prime_UTR 15.0%
!! AAAGAACATAAATGAAAATA+AGG - tig0014001:6747-6766 Msa1353760:intergenic 15.0%
!!! ATAAGTAAATTTTGACTTTT+AGG + tig0014001:7027-7046 Msa1353760:intron 15.0%
!! AATTAAAATGTGTCTTATAT+AGG - tig0014001:7327-7346 Msa1353760:intergenic 15.0%
!! AATGTAACTAAAAAACATTA+TGG + tig0014001:7350-7369 Msa1353760:intron 15.0%
!! ATAATAATCAATTCAATCAT+TGG - tig0014001:7893-7912 Msa1353760:intergenic 15.0%
!!! CTAAAAAATCTTTTATCATA+TGG - tig0014001:8959-8978 Msa1353760:intergenic 15.0%
!! AATAAAATGTTAGAAACAAA+AGG + tig0014001:9986-10005 Msa1353760:intron 15.0%
!!! CATTTGGTTTATTATTTATA+AGG - tig0014001:10193-10212 Msa1353760:intergenic 15.0%
!!! AATAAATGAATTTTTGCATT+TGG - tig0014001:10209-10228 Msa1353760:intergenic 15.0%
!!! AACTATGTAATTTTTTTCAT+AGG + tig0014001:10633-10652 Msa1353760:three_prime_UTR 15.0%
!! ATTAGAACAAGAATCTAATA+AGG - tig0014001:6670-6689 Msa1353760:intergenic 20.0%
!! TACTTATATTAAAAAACGGA+GGG - tig0014001:7014-7033 Msa1353760:intergenic 20.0%
!! TTACTTATATTAAAAAACGG+AGG - tig0014001:7015-7034 Msa1353760:intergenic 20.0%
!! TATTCAATTAATGATGTATG+TGG + tig0014001:7052-7071 Msa1353760:intron 20.0%
!! CATTCAATTAATTATGTATG+TGG - tig0014001:7091-7110 Msa1353760:intergenic 20.0%
!!! ATAAGCAAATTTTGACTTTT+AGG - tig0014001:7116-7135 Msa1353760:intergenic 20.0%
!!! ATGCATAATTAACACTTTTA+AGG + tig0014001:7685-7704 Msa1353760:CDS 20.0%
!! TTTAAGGAAATGAAAAAAGT+AGG + tig0014001:7701-7720 Msa1353760:intron 20.0%
!!! TTTACTAAATTGTTGTTATG+TGG + tig0014001:7966-7985 Msa1353760:intron 20.0%
!!! TTTTACTATACTTTTTGTGA+AGG + tig0014001:8264-8283 Msa1353760:intron 20.0%
!!! ATATTATCTGATGATGAAAT+TGG + tig0014001:8409-8428 Msa1353760:CDS 20.0%
!!! TAACTTAGTTTAATTTTTGG+TGG + tig0014001:8570-8589 Msa1353760:intron 20.0%
!!! TTTTTTTAAATACCAATCCA+TGG + tig0014001:8929-8948 Msa1353760:intron 20.0%
!! TAATAAACACAACAAGAATA+AGG - tig0014001:9241-9260 Msa1353760:intergenic 20.0%
!!! AATCTAAGAATTGAATTTTG+TGG + tig0014001:9266-9285 Msa1353760:intron 20.0%
!!! AAAATGGGAAATTTTTTCTA+GGG + tig0014001:9414-9433 Msa1353760:intron 20.0%
!! TCAATTATAATGGTAATACA+TGG + tig0014001:9704-9723 Msa1353760:intron 20.0%
!!! ATTTTGTTATTTGTTGATAC+AGG + tig0014001:9762-9781 Msa1353760:intron 20.0%
!! TTAAATGCACAAATTCATTT+AGG + tig0014001:10259-10278 Msa1353760:intron 20.0%
!! AAAAGATTAATTTATGGCTA+TGG - tig0014001:10589-10608 Msa1353760:intergenic 20.0%
!!! TATGTAATTTTTTTCATAGG+TGG + tig0014001:10636-10655 Msa1353760:three_prime_UTR 20.0%
!!! ATGTAATTTTTTTCATAGGT+GGG + tig0014001:10637-10656 Msa1353760:three_prime_UTR 20.0%
!! ATTTGATATAAATAGAGTCA+AGG + tig0014001:10782-10801 Msa1353760:three_prime_UTR 20.0%
!! TTTGATATAAATAGAGTCAA+GGG + tig0014001:10783-10802 Msa1353760:three_prime_UTR 20.0%
! GTTCTAATAATACACCAAAA+TGG + tig0014001:6682-6701 Msa1353760:exon 25.0%
! AAAATAAGGTAAGAAGAAAG+AGG - tig0014001:6733-6752 Msa1353760:intergenic 25.0%
! TAAAAATGATGAGAGAAACA+TGG - tig0014001:6935-6954 Msa1353760:intergenic 25.0%
!!! TGTTTCTCTCATCATTTTTA+TGG + tig0014001:6935-6954 Msa1353760:intron 25.0%
! GTATAAATTTAATGACTCTG+CGG - tig0014001:6990-7009 Msa1353760:intergenic 25.0%
! TTGCTTATATTAAAAAACGG+AGG + tig0014001:7128-7147 Msa1353760:intron 25.0%
! TGCTTATATTAAAAAACGGA+GGG + tig0014001:7129-7148 Msa1353760:intron 25.0%
!! AATTTAAAATCACGCGATAT+AGG - tig0014001:7769-7788 Msa1353760:intergenic 25.0%
!! CAATTTAAAACCACAATGAT+TGG + tig0014001:7866-7885 Msa1353760:intron 25.0%
!! TTCTGGCATTAATTTTTGTA+TGG + tig0014001:7942-7961 Msa1353760:intron 25.0%
! AGGGTCAATAATTAATTAAG+TGG + tig0014001:8011-8030 Msa1353760:intron 25.0%
! AAGAGCTAAAGAAGAATTAT+TGG + tig0014001:8113-8132 Msa1353760:CDS 25.0%
! AATTATTGGATTGTTGACAA+TGG + tig0014001:8127-8146 Msa1353760:CDS 25.0%
! GAAATTGGAGATAACATTAT+TGG + tig0014001:8424-8443 Msa1353760:CDS 25.0%
!!! TTAATTTTTGGTGGTTTCTA+CGG + tig0014001:8579-8598 Msa1353760:intron 25.0%
! ATTAACTGCTTATACCTTAT+AGG - tig0014001:9117-9136 Msa1353760:intergenic 25.0%
!!! TCAAACTTTGTTATTAGTCT+CGG + tig0014001:9170-9189 Msa1353760:intron 25.0%
!! TGAATTTTGTGGAATTTTTC+AGG + tig0014001:9277-9296 Msa1353760:intron 25.0%
!!! ATTTGCAAAAGCATTCAAAA+TGG + tig0014001:9398-9417 Msa1353760:intron 25.0%
!!! TTTGCAAAAGCATTCAAAAT+GGG + tig0014001:9399-9418 Msa1353760:intron 25.0%
!!! CAAAATGGGAAATTTTTTCT+AGG + tig0014001:9413-9432 Msa1353760:intron 25.0%
! TTCAGCATAGTATAATAGTA+TGG - tig0014001:9479-9498 Msa1353760:intergenic 25.0%
!! AAATGAACGTTTTTCACATT+GGG - tig0014001:9506-9525 Msa1353760:intergenic 25.0%
!! AAAATGAACGTTTTTCACAT+TGG - tig0014001:9507-9526 Msa1353760:intergenic 25.0%
! TACGAATGAGTCAATTATAA+TGG + tig0014001:9694-9713 Msa1353760:intron 25.0%
! ATAATGGTAATACATGGTTA+AGG + tig0014001:9710-9729 Msa1353760:intron 25.0%
!!! CAAATGATGGATCATAATAA+GGG - tig0014001:9869-9888 Msa1353760:intergenic 25.0%
! AATAAAAAGAGATCAACGAA+TGG + tig0014001:9943-9962 Msa1353760:intron 25.0%
!! ATTTTATAACAAGTGCTCTT+AGG - tig0014001:10080-10099 Msa1353760:intergenic 25.0%
! AGAGATATTTGATCAGTTAT+TGG - tig0014001:10341-10360 Msa1353760:intergenic 25.0%
!! TATGTGAAAGATTTTGCTTT+TGG + tig0014001:10394-10413 Msa1353760:intron 25.0%
!!! AGATTTTGCTTTTGGTATAT+AGG + tig0014001:10402-10421 Msa1353760:intron 25.0%
! ATGCTAGAAAAAGATTCATT+GGG + tig0014001:10521-10540 Msa1353760:CDS 25.0%
!!! GCTTTTCCAATCTTTTTTTA+AGG - tig0014001:10710-10729 Msa1353760:intergenic 25.0%
! TTGATATAAATAGAGTCAAG+GGG + tig0014001:10784-10803 Msa1353760:three_prime_UTR 25.0%
TGGAGAAGAAGAAAAGATTT+GGG - tig0014001:6868-6887 Msa1353760:intergenic 30.0%
TTGGAGAAGAAGAAAAGATT+TGG - tig0014001:6869-6888 Msa1353760:intergenic 30.0%
TCTTCTTCTCCAAACAAAAA+AGG + tig0014001:6876-6895 Msa1353760:CDS 30.0%
GCAGAATTATTAGATGAGTA+TGG - tig0014001:7181-7200 Msa1353760:intergenic 30.0%
ATTTGATTCTCTGCATGAAT+TGG - tig0014001:7214-7233 Msa1353760:intergenic 30.0%
CTAAAGTAGTCTTTATTGTG+TGG + tig0014001:7241-7260 Msa1353760:intron 30.0%
ATATTCAAGACGAACATTCT+TGG + tig0014001:7404-7423 Msa1353760:CDS 30.0%
!!! TCTTTGCTTTTAGGATATGT+TGG - tig0014001:7503-7522 Msa1353760:intergenic 30.0%
!! ATCAAACGTTCTTTGCTTTT+AGG - tig0014001:7512-7531 Msa1353760:intergenic 30.0%
AAAAGCAAAGAACGTTTGAT+TGG + tig0014001:7512-7531 Msa1353760:CDS 30.0%
! TATCGCGTGATTTTAAATTG+CGG + tig0014001:7770-7789 Msa1353760:intron 30.0%
ACTTGAATCACATTTGAGTA+AGG - tig0014001:7837-7856 Msa1353760:intergenic 30.0%
! ATATTGAAGTGTCACATTTC+TGG + tig0014001:7925-7944 Msa1353760:intron 30.0%
AAACTGCAAAAGATCAAAGA+TGG - tig0014001:8038-8057 Msa1353760:intergenic 30.0%
!!! TTGCAGTTTTCTTTTGAAGT+TGG + tig0014001:8049-8068 Msa1353760:intron 30.0%
! GTTGGTATTCTCAAAGTTTT+TGG + tig0014001:8067-8086 Msa1353760:CDS 30.0%
!! ACAATACAAAAAAGCACTCT+TGG + tig0014001:8183-8202 Msa1353760:CDS 30.0%
!!! GAAACTTGGAAGTATTTTGA+AGG + tig0014001:8294-8313 Msa1353760:CDS 30.0%
TGAAGGAAATAATTAGTGAG+AGG + tig0014001:8311-8330 Msa1353760:CDS 30.0%
!!! TTTTGAGCTGTTTCTTGAAT+TGG + tig0014001:8368-8387 Msa1353760:CDS 30.0%
! TTTACACATTCGAGAAGTTT+TGG - tig0014001:8520-8539 Msa1353760:intergenic 30.0%
AAAACTTCTCGAATGTGTAA+AGG + tig0014001:8519-8538 Msa1353760:CDS 30.0%
! TTTGAGTGAACTTTAACTTC+TGG - tig0014001:8636-8655 Msa1353760:intergenic 30.0%
!!! TTCGTTTTTTACTGTTGAGT+CGG + tig0014001:8707-8726 Msa1353760:intron 30.0%
TGAGAACTTCTACTTATGTA+TGG + tig0014001:8875-8894 Msa1353760:intron 30.0%
! TTTTAAATACCAATCCATGG+TGG + tig0014001:8932-8951 Msa1353760:intron 30.0%
TCAAGTGACACTATAATTTG+TGG + tig0014001:8995-9014 Msa1353760:intron 30.0%
AAACATGCCAATTACCTATA+AGG + tig0014001:9100-9119 Msa1353760:CDS 30.0%
GCTTATACCTTATAGGTAAT+TGG - tig0014001:9110-9129 Msa1353760:intergenic 30.0%
ACATGAGAATATTATGAACC+AGG + tig0014001:9564-9583 Msa1353760:intron 30.0%
! TGATGAATATTTCTGAACAG+TGG - tig0014001:9621-9640 Msa1353760:intergenic 30.0%
!! CCAAATGATGGATCATAATA+AGG - tig0014001:9870-9889 Msa1353760:intergenic 30.0%
CCTTATTATGATCCATCATT+TGG + tig0014001:9867-9886 Msa1353760:CDS 30.0%
AACAAAAGGAGATCAATGAA+TGG + tig0014001:10000-10019 Msa1353760:intron 30.0%
! TTTCTTTTTCTTCCTTAGAG+TGG + tig0014001:10156-10175 Msa1353760:intron 30.0%
!! TTTGCTTTTGGTATATAGGT+TGG + tig0014001:10406-10425 Msa1353760:intron 30.0%
CATGCTAGAAAAAGATTCAT+TGG + tig0014001:10520-10539 Msa1353760:CDS 30.0%
TGCTAGAAAAAGATTCATTG+GGG + tig0014001:10522-10541 Msa1353760:CDS 30.0%
TAATTTATGGCTATGGAAAG+TGG - tig0014001:10582-10601 Msa1353760:intergenic 30.0%
AAGCGTCCTTAAAAAAAGAT+TGG + tig0014001:10701-10720 Msa1353760:three_prime_UTR 30.0%
! CACCAAAATGGATTCAACTT+TGG + tig0014001:6694-6713 Msa1353760:exon 35.0%
! AGCCAAAGTTGAATCCATTT+TGG - tig0014001:6699-6718 Msa1353760:intergenic 35.0%
!! TGTTTTGTTCTAGGTCGTTT+TGG - tig0014001:6770-6789 Msa1353760:intergenic 35.0%
!!! GCACTTGTTTGTTTTGTTCT+AGG - tig0014001:6779-6798 Msa1353760:intergenic 35.0%
GAAGAAAAGATTTGGGTCTT+GGG - tig0014001:6861-6880 Msa1353760:intergenic 35.0%
AGAAGAAAAGATTTGGGTCT+TGG - tig0014001:6862-6881 Msa1353760:intergenic 35.0%
!!! GCATAGCAACCTTTTTTGTT+TGG - tig0014001:6888-6907 Msa1353760:intergenic 35.0%
AAATGATGAGAGAAACATGG+AGG - tig0014001:6932-6951 Msa1353760:intergenic 35.0%
TAAATTTAATGACTCTGCGG+TGG - tig0014001:6987-7006 Msa1353760:intergenic 35.0%
! TGCATGAATTGGTTTAGTCA+CGG - tig0014001:7203-7222 Msa1353760:intergenic 35.0%
AATCATTGGTCCAATCATTG+TGG - tig0014001:7879-7898 Msa1353760:intergenic 35.0%
TGTGATGTGTGGAACAATAA+AGG + tig0014001:7991-8010 Msa1353760:intron 35.0%
GTGATGTGTGGAACAATAAA+GGG + tig0014001:7992-8011 Msa1353760:intron 35.0%
TCATTTCCAACTCAAATTCC+TGG + tig0014001:8157-8176 Msa1353760:CDS 35.0%
!!! GCTTTTTTGTATTGTGTACC+AGG - tig0014001:8178-8197 Msa1353760:intergenic 35.0%
GGAAATAATTAGTGAGAGGA+AGG + tig0014001:8315-8334 Msa1353760:CDS 35.0%
!! AGCTGTTTCTTGAATTGGAA+AGG + tig0014001:8373-8392 Msa1353760:CDS 35.0%
TTCTTGAATTGGAAAGGAGA+AGG + tig0014001:8379-8398 Msa1353760:CDS 35.0%
CTCAACAGTAAAAAACGAAG+AGG - tig0014001:8706-8725 Msa1353760:intergenic 35.0%
TGTTGAGTCGGTAATCTAAT+TGG + tig0014001:8719-8738 Msa1353760:intron 35.0%
! CGAATATGTGTTGAGTTTTG+AGG + tig0014001:8772-8791 Msa1353760:intron 35.0%
! TTTTATCATATGGTCCACCA+TGG - tig0014001:8949-8968 Msa1353760:intergenic 35.0%
GCAATTCACAAGGAAAATGA+TGG + tig0014001:9047-9066 Msa1353760:CDS 35.0%
ATGGTAAACTACAGCTGAAT+TGG + tig0014001:9066-9085 Msa1353760:CDS 35.0%
!!! TGGAATTTTTCAGGTTGTGT+TGG + tig0014001:9286-9305 Msa1353760:intron 35.0%
ATAGCTGTGACATTACATAG+TGG - tig0014001:9449-9468 Msa1353760:intergenic 35.0%
CTTGAAGGGTTGAATTTATG+AGG - tig0014001:9666-9685 Msa1353760:intergenic 35.0%
ATTCAACCCTTCAAGATTTG+AGG + tig0014001:9671-9690 Msa1353760:CDS 35.0%
TTCGTACCTCAAATCTTGAA+GGG - tig0014001:9680-9699 Msa1353760:intergenic 35.0%
ATTCGTACCTCAAATCTTGA+AGG - tig0014001:9681-9700 Msa1353760:intergenic 35.0%
!!! GGCATGAAAGTATTTGGTTT+TGG - tig0014001:9793-9812 Msa1353760:intergenic 35.0%
!! CCAAATGGCATGAAAGTATT+TGG - tig0014001:9799-9818 Msa1353760:intergenic 35.0%
CCAAATACTTTCATGCCATT+TGG + tig0014001:9796-9815 Msa1353760:CDS 35.0%
TAAACTTGACGACCAAATGA+TGG - tig0014001:9882-9901 Msa1353760:intergenic 35.0%
ATCATTTGGTCGTCAAGTTT+AGG + tig0014001:9881-9900 Msa1353760:CDS 35.0%
GTATATAGTTGTCCACTCTA+AGG - tig0014001:10171-10190 Msa1353760:intergenic 35.0%
! TTTGGTATATAGGTTGGAAG+TGG + tig0014001:10412-10431 Msa1353760:intron 35.0%
CATTCAAAGGCAATGGAAAT+GGG - tig0014001:10466-10485 Msa1353760:intergenic 35.0%
!! TGAATCTTTTTCTAGCATGC+TGG - tig0014001:10519-10538 Msa1353760:intergenic 35.0%
! ATGGGATTTTGTAGGATAGA+GGG - tig0014001:10679-10698 Msa1353760:intergenic 35.0%
!!! TTTTTTAAGGACGCTTGCAT+GGG - tig0014001:10697-10716 Msa1353760:intergenic 35.0%
!!! TTTTTTTAAGGACGCTTGCA+TGG - tig0014001:10698-10717 Msa1353760:intergenic 35.0%
TAAATAGAGTCAAGGGGATT+TGG + tig0014001:10790-10809 Msa1353760:three_prime_UTR 35.0%
AAAACTTCCTCCTGGTTCAA+TGG + tig0014001:6799-6818 Msa1353760:CDS 40.0%
AAACTTCCTCCTGGTTCAAT+GGG + tig0014001:6800-6819 Msa1353760:CDS 40.0%
TGAAGGGTTTGTCCTATGTA+AGG - tig0014001:6830-6849 Msa1353760:intergenic 40.0%
GGTCGATTGTAGATGATATG+AGG + tig0014001:7262-7281 Msa1353760:intron 40.0%
TGGATGTAAGTGTGTGATGT+TGG + tig0014001:7424-7443 Msa1353760:CDS 40.0%
TGGTGGAAAAACAAAGCACA+AGG - tig0014001:7539-7558 Msa1353760:intergenic 40.0%
!!! TGTGCTTTGTTTTTCCACCA+AGG + tig0014001:7539-7558 Msa1353760:CDS 40.0%
TAAGCTTCCTCAAACGCAAA+TGG - tig0014001:7571-7590 Msa1353760:intergenic 40.0%
GTTTGAGGAAGCTTATTCAG+AGG + tig0014001:7576-7595 Msa1353760:CDS 40.0%
!! CCAAGATTTGATGGTGGAAA+GGG - tig0014001:7654-7673 Msa1353760:intergenic 40.0%
CCTTTCCACCATCAAATCTT+GGG + tig0014001:7652-7671 Msa1353760:CDS 40.0%
CTTTCCACCATCAAATCTTG+GGG + tig0014001:7653-7672 Msa1353760:CDS 40.0%
ATCATCACCCCAAGATTTGA+TGG - tig0014001:7663-7682 Msa1353760:intergenic 40.0%
ATCAAATCTTGGGGTGATGA+TGG + tig0014001:7662-7681 Msa1353760:CDS 40.0%
GTTATGTGGAATGTGATGTG+TGG + tig0014001:7980-7999 Msa1353760:intron 40.0%
!! TTTTTGGCAATCTAGAGCCA+AGG + tig0014001:8083-8102 Msa1353760:CDS 40.0%
TGTGTACCAGGAATTTGAGT+TGG - tig0014001:8166-8185 Msa1353760:intergenic 40.0%
TTGAATTGGAAAGGAGAAGG+AGG + tig0014001:8382-8401 Msa1353760:CDS 40.0%
!!! ATTTTTGGTGGTTTCTACGG+TGG + tig0014001:8582-8601 Msa1353760:intron 40.0%
!! GACACTGACTTCATTGATGT+CGG - tig0014001:8832-8851 Msa1353760:intergenic 40.0%
CTCAATTCTCTTCGTCTTCA+TGG - tig0014001:8859-8878 Msa1353760:intergenic 40.0%
! TGTGGTAATGCTTGCTTTGT+AGG + tig0014001:9013-9032 Msa1353760:intron 40.0%
TCAGCTACTGCTTCTCTAAA+TGG - tig0014001:9344-9363 Msa1353760:intergenic 40.0%
GTAGCTGATGTAGAGTACAA+AGG + tig0014001:9356-9375 Msa1353760:CDS 40.0%
CAGGATTCCTAATCCCAAAA+GGG + tig0014001:9583-9602 Msa1353760:intron 40.0%
!! TGAGGCTCTGGAAAAAATTC+AGG - tig0014001:9648-9667 Msa1353760:intergenic 40.0%
! ACTTTCATGCCATTTGGTAG+TGG + tig0014001:9802-9821 Msa1353760:CDS 40.0%
! GTATATAGGTTGGAAGTGGT+AGG + tig0014001:10416-10435 Msa1353760:intron 40.0%
TCACACTGTGGGATTCAATA+TGG + tig0014001:10440-10459 Msa1353760:CDS 40.0%
CCATTCAAAGGCAATGGAAA+TGG - tig0014001:10467-10486 Msa1353760:intergenic 40.0%
CCATTTCCATTGCCTTTGAA+TGG + tig0014001:10464-10483 Msa1353760:CDS 40.0%
! TGGGATTTTGTAGGATAGAG+GGG - tig0014001:10678-10697 Msa1353760:intergenic 40.0%
! CATGGGATTTTGTAGGATAG+AGG - tig0014001:10680-10699 Msa1353760:intergenic 40.0%
AAGATTGGAAAAGCCTCAAC+AGG + tig0014001:10716-10735 Msa1353760:three_prime_UTR 40.0%
AGATTGGAAAAGCCTCAACA+GGG + tig0014001:10717-10736 Msa1353760:three_prime_UTR 40.0%
ACAAGTGCAAAACTTCCTCC+TGG + tig0014001:6791-6810 Msa1353760:CDS 45.0%
AACTTCCTCCTGGTTCAATG+GGG + tig0014001:6801-6820 Msa1353760:CDS 45.0%
GTCTTGGGAGTAGAGTTGAA+GGG - tig0014001:6846-6865 Msa1353760:intergenic 45.0%
TGATGAGAGAAACATGGAGG+TGG - tig0014001:6929-6948 Msa1353760:intergenic 45.0%
AACACAAAACGTGCAGCTTC+AGG - tig0014001:7455-7474 Msa1353760:intergenic 45.0%
! TGAAGCTGCACGTTTTGTGT+TGG + tig0014001:7454-7473 Msa1353760:CDS 45.0%
AACGCAAATGGTACTCACCT+TGG - tig0014001:7559-7578 Msa1353760:intergenic 45.0%
GTGAGTACCATTTGCGTTTG+AGG + tig0014001:7561-7580 Msa1353760:CDS 45.0%
CAAGTTGCGAAGTGAATCGA+GGG - tig0014001:7609-7628 Msa1353760:intergenic 45.0%
AGGGCTAAGGCTTCAATTTC+AGG - tig0014001:7635-7654 Msa1353760:intergenic 45.0%
!! TTTGATGGTGGAAAGGGCTA+AGG - tig0014001:7648-7667 Msa1353760:intergenic 45.0%
CCCTTTCCACCATCAAATCT+TGG + tig0014001:7651-7670 Msa1353760:CDS 45.0%
!! CCCAAGATTTGATGGTGGAA+AGG - tig0014001:7655-7674 Msa1353760:intergenic 45.0%
ATCACCCCAAGATTTGATGG+TGG - tig0014001:7660-7679 Msa1353760:intergenic 45.0%
AATTGCGGCTGTAGTCACAT+TGG + tig0014001:7785-7804 Msa1353760:intron 45.0%
! CAATCTAGAGCCAAGGTTGA+GGG + tig0014001:8090-8109 Msa1353760:CDS 45.0%
!! TTTAGCTCTTCCCTCAACCT+TGG - tig0014001:8103-8122 Msa1353760:intergenic 45.0%
GTGAAGGCAAGAGAGAAACT+TGG + tig0014001:8280-8299 Msa1353760:intron 45.0%
CACAGCTACTGTCATGACAT+GGG + tig0014001:8471-8490 Msa1353760:CDS 45.0%
!! CTACGGTGGATTGCTTTGAT+AGG + tig0014001:8596-8615 Msa1353760:intron 45.0%
TCATATGGTCCACCATGGAT+TGG - tig0014001:8944-8963 Msa1353760:intergenic 45.0%
TGAGCAGAAGGCAATTCACA+AGG + tig0014001:9037-9056 Msa1353760:CDS 45.0%
TTAGTCTCGGCATTTATGCG+CGG + tig0014001:9183-9202 Msa1353760:intron 45.0%
! TGTGTTGGAGAGCATGAGAA+TGG + tig0014001:9301-9320 Msa1353760:CDS 45.0%
!!! CCTTTTGGGATTAGGAATCC+TGG - tig0014001:9585-9604 Msa1353760:intergenic 45.0%
CCAGGATTCCTAATCCCAAA+AGG + tig0014001:9582-9601 Msa1353760:intron 45.0%
GATTCCTAATCCCAAAAGGG+TGG + tig0014001:9586-9605 Msa1353760:CDS 45.0%
!!! CTTTCCACCCTTTTGGGATT+AGG - tig0014001:9593-9612 Msa1353760:intergenic 45.0%
! GCATTGCTTTCCACCCTTTT+GGG - tig0014001:9599-9618 Msa1353760:intergenic 45.0%
GGGTTGAATTTATGAGGCTC+TGG - tig0014001:9660-9679 Msa1353760:intergenic 45.0%
GCATGTACTCCACTACCAAA+TGG - tig0014001:9814-9833 Msa1353760:intergenic 45.0%
AAGTGGTAGGATCACACTGT+GGG + tig0014001:10429-10448 Msa1353760:CDS 45.0%
! GGGATTTTGTAGGATAGAGG+GGG - tig0014001:10677-10696 Msa1353760:intergenic 45.0%
! ACGCTTGCATGGGATTTTGT+AGG - tig0014001:10687-10706 Msa1353760:intergenic 45.0%
GATTGGAAAAGCCTCAACAG+GGG + tig0014001:10718-10737 Msa1353760:three_prime_UTR 45.0%
GAAAGATACATCCCCTGTTG+AGG - tig0014001:10732-10751 Msa1353760:intergenic 45.0%
!! AATTTACTTATATTAAAAAA+CGG - tig0014001:7018-7037 Msa1353760:intergenic 5.0%
!!! GTTATTAATATATTAATTTT+AGG + tig0014001:7372-7391 Msa1353760:intron 5.0%
! TCAATGGGGTGGCCTTACAT+AGG + tig0014001:6815-6834 Msa1353760:CDS 50.0%
GGTCTTGGGAGTAGAGTTGA+AGG - tig0014001:6847-6866 Msa1353760:intergenic 50.0%
GAGGTGGAGTGGAACTAGAT+AGG - tig0014001:6913-6932 Msa1353760:intergenic 50.0%
AGAGAAACATGGAGGTGGAG+TGG - tig0014001:6924-6943 Msa1353760:intergenic 50.0%
GCAAATGGTACTCACCTTGG+TGG - tig0014001:7556-7575 Msa1353760:intergenic 50.0%
CCAAGTTGCGAAGTGAATCG+AGG - tig0014001:7610-7629 Msa1353760:intergenic 50.0%
CCTCGATTCACTTCGCAACT+TGG + tig0014001:7607-7626 Msa1353760:CDS 50.0%
! GCAATCTAGAGCCAAGGTTG+AGG + tig0014001:8089-8108 Msa1353760:CDS 50.0%
!! TGGAGTGCTTTTTGCTGCTC+AGG + tig0014001:8444-8463 Msa1353760:CDS 50.0%
CCATGTCATGACAGTAGCTG+TGG - tig0014001:8473-8492 Msa1353760:intergenic 50.0%
CCACAGCTACTGTCATGACA+TGG + tig0014001:8470-8489 Msa1353760:CDS 50.0%
!! CGGTGGATTGCTTTGATAGG+TGG + tig0014001:8599-8618 Msa1353760:intron 50.0%
TGCTTTGTAGGCTGAGCAGA+AGG + tig0014001:9025-9044 Msa1353760:intron 50.0%
! GGCATTGCTTTCCACCCTTT+TGG - tig0014001:9600-9619 Msa1353760:intergenic 50.0%
AGTGGAGTACATGCTTGTCC+TGG + tig0014001:9820-9839 Msa1353760:CDS 50.0%
AGCTTAGCAAGCTCATTGCC+AGG - tig0014001:9841-9860 Msa1353760:intergenic 50.0%
!! TGGCAATGAGCTTGCTAAGC+TGG + tig0014001:9840-9859 Msa1353760:CDS 50.0%
GAAGTGGTAGGATCACACTG+TGG + tig0014001:10428-10447 Msa1353760:CDS 50.0%
GGGAGTCCATTCAAAGGCAA+TGG - tig0014001:10473-10492 Msa1353760:intergenic 50.0%
ATTCTCTCCAACACCTGGCT+GGG - tig0014001:10493-10512 Msa1353760:intergenic 50.0%
GGTAGATTCTCTCCAACACC+TGG - tig0014001:10498-10517 Msa1353760:intergenic 50.0%
TTCCTCCTGGTTCAATGGGG+TGG + tig0014001:6804-6823 Msa1353760:CDS 55.0%
TAAGGCCACCCCATTGAACC+AGG - tig0014001:6812-6831 Msa1353760:intergenic 55.0%
CTGGCTGGGAGTCCATTCAA+AGG - tig0014001:10479-10498 Msa1353760:intergenic 55.0%
! CTTTGAATGGACTCCCAGCC+AGG + tig0014001:10477-10496 Msa1353760:CDS 55.0%
GATTCTCTCCAACACCTGGC+TGG - tig0014001:10494-10513 Msa1353760:intergenic 55.0%
GTCTCGGCATTTATGCGCGG+AGG + tig0014001:9186-9205 Msa1353760:intron 60.0%
ATGGACTCCCAGCCAGGTGT+TGG + tig0014001:10483-10502 Msa1353760:CDS 60.0%
GGCCACCCCATTGAACCAGG+AGG - tig0014001:6809-6828 Msa1353760:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0014001 gene 6610 10813 6610 ID=Msa1353760;Name=Msa1353760
tig0014001 mRNA 6610 10813 6610 ID=Msa1353760-mRNA-1;Parent=Msa1353760;Name=Msa1353760-mRNA-1;_AED=0.15;_eAED=0.15;_QI=91|1|1|1|1|1|9|260|482
tig0014001 exon 6610 6897 6610 ID=Msa1353760-mRNA-1:exon:8792;Parent=Msa1353760-mRNA-1
tig0014001 exon 7394 7718 7394 ID=Msa1353760-mRNA-1:exon:8793;Parent=Msa1353760-mRNA-1
tig0014001 exon 8055 8204 8055 ID=Msa1353760-mRNA-1:exon:8794;Parent=Msa1353760-mRNA-1
tig0014001 exon 8286 8540 8286 ID=Msa1353760-mRNA-1:exon:8795;Parent=Msa1353760-mRNA-1
tig0014001 exon 9035 9121 9035 ID=Msa1353760-mRNA-1:exon:8796;Parent=Msa1353760-mRNA-1
tig0014001 exon 9299 9377 9299 ID=Msa1353760-mRNA-1:exon:8797;Parent=Msa1353760-mRNA-1
tig0014001 exon 9586 9692 9586 ID=Msa1353760-mRNA-1:exon:8798;Parent=Msa1353760-mRNA-1
tig0014001 exon 9784 9902 9784 ID=Msa1353760-mRNA-1:exon:8799;Parent=Msa1353760-mRNA-1
tig0014001 exon 10424 10813 10424 ID=Msa1353760-mRNA-1:exon:8800;Parent=Msa1353760-mRNA-1
tig0014001 five_prime_UTR 6610 6700 6610 ID=Msa1353760-mRNA-1:five_prime_utr;Parent=Msa1353760-mRNA-1
tig0014001 CDS 6701 6897 6701 ID=Msa1353760-mRNA-1:cds;Parent=Msa1353760-mRNA-1
tig0014001 CDS 7394 7718 7394 ID=Msa1353760-mRNA-1:cds;Parent=Msa1353760-mRNA-1
tig0014001 CDS 8055 8204 8055 ID=Msa1353760-mRNA-1:cds;Parent=Msa1353760-mRNA-1
tig0014001 CDS 8286 8540 8286 ID=Msa1353760-mRNA-1:cds;Parent=Msa1353760-mRNA-1
tig0014001 CDS 9035 9121 9035 ID=Msa1353760-mRNA-1:cds;Parent=Msa1353760-mRNA-1
tig0014001 CDS 9299 9377 9299 ID=Msa1353760-mRNA-1:cds;Parent=Msa1353760-mRNA-1
tig0014001 CDS 9586 9692 9586 ID=Msa1353760-mRNA-1:cds;Parent=Msa1353760-mRNA-1
tig0014001 CDS 9784 9902 9784 ID=Msa1353760-mRNA-1:cds;Parent=Msa1353760-mRNA-1
tig0014001 CDS 10424 10553 10424 ID=Msa1353760-mRNA-1:cds;Parent=Msa1353760-mRNA-1
tig0014001 three_prime_UTR 10554 10813 10554 ID=Msa1353760-mRNA-1:three_prime_utr;Parent=Msa1353760-mRNA-1
Gene Sequence

>Msa1353760

ATGGATTCAACTTTGGCTTACATCATTGTCCTCTTTCTTCTTACCTTATTTTCATTTATGTTCTTTCCAAAACGACCTAGAACAAAACAAACAAGTGCAAAACTTCCTCCTGGTTCAATGGGGTGGCCTTACATAGGACAAACCCTTCAACTCTACTCCCAAGACCCAAATCTTTTCTTCTTCTCCAAACAAAAAAGGTACGGAGAAATATTCAAGACGAACATTCTTGGATGTAAGTGTGTGATGTTGGCAAGTCCTGAAGCTGCACGTTTTGTGTTGGTGACACAATCTCACTTATTTAAACCAACATATCCTAAAAGCAAAGAACGTTTGATTGGTCCTTGTGCTTTGTTTTTCCACCAAGGTGAGTACCATTTGCGTTTGAGGAAGCTTATTCAGAGGTCTCTCTCCCTCGATTCACTTCGCAACTTGGTTCCTGAAATTGAAGCCTTAGCCCTTTCCACCATCAAATCTTGGGGTGATGATGGATGCATAATTAACACTTTTAAGGAAATGAAAAAATTTTCTTTTGAAGTTGGTATTCTCAAAGTTTTTGGCAATCTAGAGCCAAGGTTGAGGGAAGAGCTAAAGAAGAATTATTGGATTGTTGACAATGGTTACAATTCATTTCCAACTCAAATTCCTGGTACACAATACAAAAAAGCACTCTTGGCAAGAGAGAAACTTGGAAGTATTTTGAAGGAAATAATTAGTGAGAGGAAGGAGAAGAAGTTGCTTGAAAGTGAAAGAGATCTTTTGAGCTGTTTCTTGAATTGGAAAGGAGAAGGAGGAGAAATATTATCTGATGATGAAATTGGAGATAACATTATTGGAGTGCTTTTTGCTGCTCAGGATACCACAGCTACTGTCATGACATGGGTGATCAAGTACTTGCATGATGAACCAAAACTTCTCGAATGTGTAAAGGCTGAGCAGAAGGCAATTCACAAGGAAAATGATGGTAAACTACAGCTGAATTGGAATCAGACTAGAAACATGCCAATTACCTATAAGGTTGTGTTGGAGAGCATGAGAATGGCAAGTGTTATATCATTTCCATTTAGAGAAGCAGTAGCTGATGTAGAGTACAAAGGATTCCTAATCCCAAAAGGGTGGAAAGCAATGCCACTGTTCAGAAATATTCATCATAATCCTGAATTTTTTCCAGAGCCTCATAAATTCAACCCTTCAAGATTTGAGGTTTCACCAAAACCAAATACTTTCATGCCATTTGGTAGTGGAGTACATGCTTGTCCTGGCAATGAGCTTGCTAAGCTGGAGACCCTTATTATGATCCATCATTTGGTCGTCAAGTTTAGGTTGGAAGTGGTAGGATCACACTGTGGGATTCAATATGGCCCATTTCCATTGCCTTTGAATGGACTCCCAGCCAGGTGTTGGAGAGAATCTACCAGCATGCTAGAAAAAGATTCATTGGGGAAGAAATGA
Protein sequence

>Msa1353760

MDSTLAYIIVLFLLTLFSFMFFPKRPRTKQTSAKLPPGSMGWPYIGQTLQLYSQDPNLFFFSKQKRYGEIFKTNILGCKCVMLASPEAARFVLVTQSHLFKPTYPKSKERLIGPCALFFHQGEYHLRLRKLIQRSLSLDSLRNLVPEIEALALSTIKSWGDDGCIINTFKEMKKFSFEVGILKVFGNLEPRLREELKKNYWIVDNGYNSFPTQIPGTQYKKALLAREKLGSILKEIISERKEKKLLESERDLLSCFLNWKGEGGEILSDDEIGDNIIGVLFAAQDTTATVMTWVIKYLHDEPKLLECVKAEQKAIHKENDGKLQLNWNQTRNMPITYKVVLESMRMASVISFPFREAVADVEYKGFLIPKGWKAMPLFRNIHHNPEFFPEPHKFNPSRFEVSPKPNTFMPFGSGVHACPGNELAKLETLIMIHHLVVKFRLEVVGSHCGIQYGPFPLPLNGLPARCWRESTSMLEKDSLGKK*