AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0770360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0770360 MtrunA17_Chr5g0448071 99.494 395 2 0 1 395 1 395 0.0 815
Msa0770360 MtrunA17_Chr1g0181831 35.034 294 172 7 106 386 295 582 8.10e-51 182
Msa0770360 MtrunA17_Chr1g0213391 33.654 312 175 7 106 391 238 543 3.54e-49 177
Msa0770360 MtrunA17_Chr6g0456341 34.510 255 156 5 105 354 79 327 7.72e-39 142
Msa0770360 MtrunA17_Chr2g0329691 25.523 239 134 5 106 304 144 378 7.15e-16 79.0
Msa0770360 MtrunA17_Chr4g0033831 25.833 240 134 6 105 304 150 385 1.74e-14 74.7
Msa0770360 MtrunA17_Chr4g0064141 27.660 141 92 4 182 317 456 591 5.40e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0770360 AT3G07890.1 83.166 398 64 1 1 395 1 398 0.0 695
Msa0770360 AT3G07890.4 83.166 398 64 1 1 395 1 398 0.0 695
Msa0770360 AT3G07890.5 83.166 398 64 1 1 395 1 398 0.0 695
Msa0770360 AT3G07890.2 83.166 398 64 1 1 395 1 398 0.0 695
Msa0770360 AT3G07890.3 83.166 398 64 1 1 395 1 398 0.0 695
Msa0770360 AT2G37290.1 34.708 291 172 8 106 386 310 592 5.92e-48 175
Msa0770360 AT2G37290.3 35.052 291 171 8 106 386 310 592 6.91e-48 175
Msa0770360 AT3G55020.2 34.727 311 171 7 106 391 237 540 2.02e-44 164
Msa0770360 AT3G55020.3 34.951 309 169 7 106 389 237 538 2.11e-44 164
Msa0770360 AT2G39280.1 34.740 308 171 7 106 389 224 525 2.37e-44 164
Msa0770360 AT2G39280.2 34.740 308 171 7 106 389 252 553 2.54e-44 164
Msa0770360 AT3G55020.1 34.951 309 169 7 106 389 237 538 5.74e-44 163
Msa0770360 AT2G37290.2 31.077 325 172 9 106 386 310 626 2.80e-42 159
Msa0770360 AT5G15930.1 35.686 255 153 5 105 354 77 325 7.31e-40 145
Msa0770360 AT3G02460.3 34.118 255 157 6 105 354 80 328 3.35e-37 138
Msa0770360 AT3G02460.1 34.118 255 157 6 105 354 80 328 4.29e-37 138
Msa0770360 AT3G02460.4 35.556 225 135 5 105 324 80 299 1.91e-36 135
Msa0770360 AT3G02460.5 34.783 207 125 5 105 306 80 281 6.47e-29 114
Msa0770360 AT3G02460.2 34.804 204 123 5 105 303 80 278 2.30e-28 114
Msa0770360 AT2G30710.1 23.137 255 147 6 95 304 120 370 3.33e-12 68.2

Find 140 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATTTGTCATCCACTTTA+AGG 0.080620 5_2:+40948661 None:intergenic
GGATTCAAAATTCAAATTTA+TGG 0.111270 5_2:+40951569 None:intergenic
GTGAAATTTCAAGACCTTTA+CGG 0.248878 5_2:-40951240 Msa0770360:CDS
AAACCGAAGAAGATGCATTT+TGG 0.266291 5_2:-40949564 Msa0770360:CDS
TTCAGACAACTCTGCGAGTA+TGG 0.269992 5_2:-40949170 Msa0770360:intron
GATTCAAAATTCAAATTTAT+GGG 0.273447 5_2:+40951570 None:intergenic
TTACTTTGAAGAAGTTGATT+AGG 0.313845 5_2:-40951029 Msa0770360:CDS
TCAAGCTCCTTCATGACTTC+AGG 0.321554 5_2:+40948708 None:intergenic
ATTGGTCTATTTAGAGGAAC+TGG 0.326076 5_2:+40951465 None:intergenic
TGTAATATAGAGATAGAAAA+AGG 0.326971 5_2:+40951787 None:intergenic
ATGCAGGATTGCAACTCATT+TGG 0.330638 5_2:-40949351 Msa0770360:intron
TCAAGACCTTTACGGATTTA+CGG 0.333594 5_2:-40951232 Msa0770360:CDS
AAGGGATACCGCCGGTTCTT+AGG 0.336781 5_2:-40951005 Msa0770360:CDS
TACTTCTAACCCATCATGTT+GGG 0.337498 5_2:-40948976 Msa0770360:CDS
TGTTACACAAACAACTTATC+AGG 0.346585 5_2:-40949502 Msa0770360:CDS
TACACCAGGGCTCTCATATC+AGG 0.353913 5_2:+40948451 None:intergenic
TTGGATGCTTGCTGTCTTGT+TGG 0.355412 5_2:-40949545 Msa0770360:CDS
TTTGAAACACAACCATGAAT+TGG 0.357719 5_2:+40951447 None:intergenic
CTTACGGTTAGTAAATCATC+TGG 0.358408 5_2:+40948908 None:intergenic
CATCCAAAATGCATCTTCTT+CGG 0.364689 5_2:+40949561 None:intergenic
CTATTTGTCATCCACTTTAA+GGG 0.366536 5_2:+40948662 None:intergenic
CCATGAATTGGTCTATTTAG+AGG 0.367855 5_2:+40951459 None:intergenic
TGGTATCTTCATACAACTAT+AGG 0.368495 5_2:-40951105 Msa0770360:CDS
TCTTTCCGTGATTCTGATGT+TGG 0.376757 5_2:-40950068 Msa0770360:CDS
CTGAGGGGCATGCTGCTCTT+AGG 0.385895 5_2:-40950109 Msa0770360:CDS
TGTTGCAGCATTGTTGTTGC+TGG 0.387100 5_2:-40949593 Msa0770360:CDS
CCTCTAAATAGACCAATTCA+TGG 0.387222 5_2:-40951459 Msa0770360:five_prime_UTR
AAATCATCATAATAACTATC+AGG 0.388289 5_2:+40950931 None:intergenic
AGGCTAGTAAAGGTGCTAAT+TGG 0.395900 5_2:-40951125 Msa0770360:CDS
CTTCCCTGGTCATGCATGGC+TGG 0.407109 5_2:-40950138 Msa0770360:CDS
ATGCCCTGAGGAGGATATAA+AGG 0.408255 5_2:+40948483 None:intergenic
ATTATGAAGGGAAATCAAAA+GGG 0.415024 5_2:+40951721 None:intergenic
GCTCTTCTTGAATGAATACT+TGG 0.415367 5_2:+40951273 None:intergenic
GGTTATATTCAATGTGGCCT+TGG 0.419884 5_2:-40949121 Msa0770360:CDS
CTTTCCGTGATTCTGATGTT+GGG 0.431196 5_2:-40950067 Msa0770360:CDS
AATTATGAAGGGAAATCAAA+AGG 0.433876 5_2:+40951720 None:intergenic
AAAACTTCAATGAAGATGTA+AGG 0.440828 5_2:+40951070 None:intergenic
GTAAATCATCTGGATCAAAT+AGG 0.441554 5_2:+40948918 None:intergenic
TGAGACAACAAGGTAGAGTT+TGG 0.448600 5_2:-40951158 Msa0770360:CDS
ACGGGAGACTCTTTGAAAAC+AGG 0.449177 5_2:+40949279 None:intergenic
TCAATACTGATATTTGAGAT+TGG 0.451864 5_2:+40951298 None:intergenic
CTAAGAGCAGCATGCCCCTC+AGG 0.454012 5_2:+40950110 None:intergenic
ATCGAAAGAAAGGAAGAAAC+AGG 0.456294 5_2:-40948733 Msa0770360:CDS
CGGTTCTTAGGCCTAAGGTT+TGG 0.458166 5_2:-40950993 Msa0770360:CDS
AAAGCTAAATTCCCTTAAAG+TGG 0.461650 5_2:-40948673 Msa0770360:CDS
GACCTACCGCGAACCTTCCC+TGG 0.461802 5_2:-40950152 Msa0770360:CDS
GAATCCTTTATATCCTCCTC+AGG 0.463418 5_2:-40948487 Msa0770360:three_prime_UTR
TAGAGTTTGGTGGGCATTGG+AGG 0.465496 5_2:-40951145 Msa0770360:CDS
AGGTAGAGTTTGGTGGGCAT+TGG 0.468349 5_2:-40951148 Msa0770360:CDS
TTGAAGAAGTTGATTAGGAA+AGG 0.470950 5_2:-40951024 Msa0770360:CDS
TCAAACAGGCTCAATTGCCT+TGG 0.473488 5_2:+40948282 None:intergenic
TGATCGATCTGTCTAGTAGC+AGG 0.473866 5_2:+40950880 None:intergenic
TAAAGGATTCCACAGTTTCA+AGG 0.474893 5_2:+40948500 None:intergenic
TGAAGAAGTTGATTAGGAAA+GGG 0.478737 5_2:-40951023 Msa0770360:CDS
CAAATACAATATCGAAAGAA+AGG 0.482958 5_2:-40948743 Msa0770360:CDS
TGTCTTGTTGGAAAATGTCC+TGG 0.490418 5_2:-40949533 Msa0770360:CDS
GTGTCCAGCCATGCATGACC+AGG 0.492772 5_2:+40950134 None:intergenic
TTCTGATGTTGGGTATTGTC+AGG 0.495259 5_2:-40950057 Msa0770360:intron
GGAACTGGGTCATTAAGATT+AGG 0.496554 5_2:+40951480 None:intergenic
TCAATTGCCTTGGGAAATCA+AGG 0.500943 5_2:+40948292 None:intergenic
TGATTGCTTCCCCAACATGA+TGG 0.503130 5_2:+40948966 None:intergenic
GACAAAAGCTGTGGAGGGGA+AGG 0.510751 5_2:-40950908 Msa0770360:CDS
CAGGTGGCATTTGATAAGAT+AGG 0.515677 5_2:-40948777 Msa0770360:CDS
AAAATTAAAGACAAAATCAA+AGG 0.517955 5_2:+40948638 None:intergenic
CGTTGAAGCAGACCGTACTT+AGG 0.525171 5_2:+40948530 None:intergenic
CAAACAGGCTCAATTGCCTT+GGG 0.525194 5_2:+40948283 None:intergenic
ATGGCTTCCTTGATTTCCCA+AGG 0.525665 5_2:-40948299 Msa0770360:three_prime_UTR
TGAATGTGTTGAATGAGGTA+AGG 0.526151 5_2:-40951188 Msa0770360:CDS
ACTTTCTTAAGTATTCTCCA+TGG 0.528554 5_2:-40948318 Msa0770360:three_prime_UTR
AAGAATGAAGAAAGAAGAGG+AGG 0.531770 5_2:+40951828 None:intergenic
GATTGCTTCCCCAACATGAT+GGG 0.534270 5_2:+40948967 None:intergenic
GAACCTTCCCTGGTCATGCA+TGG 0.535148 5_2:-40950142 Msa0770360:CDS
TACTCTAACCAACCTCTGAC+GGG 0.539355 5_2:+40949261 None:intergenic
CTAAGTGATCGTCCTAAGTA+CGG 0.541595 5_2:-40948542 Msa0770360:three_prime_UTR
TTGTGTAACAGTCGCTAACC+AGG 0.544589 5_2:+40949515 None:intergenic
TTACTCTAACCAACCTCTGA+CGG 0.545573 5_2:+40949260 None:intergenic
GACTCTTTGAAAACAGGCAC+AGG 0.549621 5_2:+40949285 None:intergenic
AGAAAGAATGAAGAAAGAAG+AGG 0.550219 5_2:+40951825 None:intergenic
GGAACCACTCAGTGGTAACA+AGG 0.552412 5_2:+40949306 None:intergenic
TAAACACTCTTTGCTCAACA+TGG 0.554405 5_2:+40949476 None:intergenic
TTACTTCTAACCCATCATGT+TGG 0.558439 5_2:-40948977 Msa0770360:CDS
TCAGACAACTCTGCGAGTAT+GGG 0.558601 5_2:-40949169 Msa0770360:intron
GAGATTGGTATTCAAATGCA+AGG 0.558769 5_2:+40951313 None:intergenic
ATATCCTCCTCAGGGCATCA+TGG 0.561052 5_2:-40948478 Msa0770360:three_prime_UTR
GACAACGAAAACCAAACCTT+AGG 0.561094 5_2:+40950982 None:intergenic
GCATGACCAGGGAAGGTTCG+CGG 0.562802 5_2:+40950146 None:intergenic
CAAACCTTAGGCCTAAGAAC+CGG 0.563264 5_2:+40950994 None:intergenic
AGAATGAAGAAAGAAGAGGA+GGG 0.566558 5_2:+40951829 None:intergenic
TGCATGGCTGGACACACCTG+AGG 0.567869 5_2:-40950126 Msa0770360:CDS
AAATTAAAGACAAAATCAAA+GGG 0.568183 5_2:+40948639 None:intergenic
TTCAAAGAGTCTCCCGTCAG+AGG 0.572974 5_2:-40949273 Msa0770360:intron
CTTCCACCGTAAATCCGTAA+AGG 0.573362 5_2:+40951226 None:intergenic
TTGGGAAATCAAGGAAGCCA+TGG 0.576180 5_2:+40948301 None:intergenic
CAAACATCCTAAAATACACC+AGG 0.576600 5_2:+40948437 None:intergenic
ATTTACGGTGGAAGGGAATG+TGG 0.580573 5_2:-40951217 Msa0770360:CDS
GTTGAATGAGGTAAGGGAAA+AGG 0.582835 5_2:-40951181 Msa0770360:CDS
CAGCCATGCATGACCAGGGA+AGG 0.584769 5_2:+40950139 None:intergenic
TGGGCATTGGAGGCTAGTAA+AGG 0.588086 5_2:-40951135 Msa0770360:CDS
GATCGATCTGTCTAGTAGCA+GGG 0.591539 5_2:+40950881 None:intergenic
ACAACAAGGTAGAGTTTGGT+GGG 0.592742 5_2:-40951154 Msa0770360:CDS
GCATGGCTGGACACACCTGA+GGG 0.595690 5_2:-40950125 Msa0770360:CDS
CTTCATACAACTATAGGACA+AGG 0.596275 5_2:-40951099 Msa0770360:CDS
ACAGGAACCTGAAGTCATGA+AGG 0.596550 5_2:-40948715 Msa0770360:CDS
AAACTTCAATGAAGATGTAA+GGG 0.596630 5_2:+40951071 None:intergenic
GACAACAAGGTAGAGTTTGG+TGG 0.598220 5_2:-40951155 Msa0770360:CDS
ACTTCTAACCCATCATGTTG+GGG 0.607842 5_2:-40948975 Msa0770360:CDS
TCATGAAGGAGCTTGATCAA+AGG 0.615296 5_2:-40948701 Msa0770360:CDS
TTTACGGATTTACGGTGGAA+GGG 0.617053 5_2:-40951224 Msa0770360:CDS
TTGGTCTATTTAGAGGAACT+GGG 0.619198 5_2:+40951466 None:intergenic
GATTAGGAAAGGGATACCGC+CGG 0.624725 5_2:-40951013 Msa0770360:CDS
AGGGAAAAGGTGAGACAACA+AGG 0.626455 5_2:-40951168 Msa0770360:CDS
TGATGATTTGACAAAAGCTG+TGG 0.626507 5_2:-40950917 Msa0770360:CDS
ACGATCACTTAGATGATCGA+TGG 0.626790 5_2:+40948553 None:intergenic
GACCAGGGAAGGTTCGCGGT+AGG 0.626818 5_2:+40950150 None:intergenic
TGATTTGACAAAAGCTGTGG+AGG 0.626930 5_2:-40950914 Msa0770360:CDS
CGAGCAAAACCTTGAAACTG+TGG 0.627223 5_2:-40948509 Msa0770360:three_prime_UTR
TTATGAAGGGAAATCAAAAG+GGG 0.628075 5_2:+40951722 None:intergenic
ATCGATCTGTCTAGTAGCAG+GGG 0.629772 5_2:+40950882 None:intergenic
ATTTGACAAAAGCTGTGGAG+GGG 0.633275 5_2:-40950912 Msa0770360:CDS
TTTCCCTTGTTACCACTGAG+TGG 0.641659 5_2:-40949310 Msa0770360:CDS
AATACCCAACATCAGAATCA+CGG 0.643921 5_2:+40950063 None:intergenic
GAATGTGTTGAATGAGGTAA+GGG 0.645937 5_2:-40951187 Msa0770360:CDS
GATTTGACAAAAGCTGTGGA+GGG 0.649265 5_2:-40950913 Msa0770360:CDS
TGATGTGAATGTGTTGAATG+AGG 0.650814 5_2:-40951193 Msa0770360:CDS
TGGATCAAATAGGTGATGAG+TGG 0.652823 5_2:+40948928 None:intergenic
TATGCCTGATATGAGAGCCC+TGG 0.653344 5_2:-40948455 Msa0770360:three_prime_UTR
TTCATACAACTATAGGACAA+GGG 0.663703 5_2:-40951098 Msa0770360:CDS
GTTGTGTTTCAAATTTGACA+AGG 0.668050 5_2:-40951437 Msa0770360:five_prime_UTR
TGTCCAGCCATGCATGACCA+GGG 0.668410 5_2:+40950135 None:intergenic
ATAATAACTATCAGGAACCG+TGG 0.668857 5_2:+40950939 None:intergenic
CATACCATGATGCCCTGAGG+AGG 0.671558 5_2:+40948474 None:intergenic
GAACCACTCAGTGGTAACAA+GGG 0.675458 5_2:+40949307 None:intergenic
AATCCTTTATATCCTCCTCA+GGG 0.676018 5_2:-40948486 Msa0770360:three_prime_UTR
ACCTTAGGCCTAAGAACCGG+CGG 0.687012 5_2:+40950997 None:intergenic
AGACCTTTACGGATTTACGG+TGG 0.702102 5_2:-40951229 Msa0770360:CDS
GGCTAAGGTTATATTCAATG+TGG 0.703848 5_2:-40949127 Msa0770360:CDS
CATGGCTGGACACACCTGAG+GGG 0.717304 5_2:-40950124 Msa0770360:CDS
AGGCATACCATGATGCCCTG+AGG 0.719941 5_2:+40948471 None:intergenic
AAACATCCTAAAATACACCA+GGG 0.730245 5_2:+40948438 None:intergenic
CAGGCACAGGAACCACTCAG+TGG 0.731988 5_2:+40949298 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATGATATCAAAAAA+GGG - chr5_2:40948513-40948532 Msa0770360:three_prime_UTR 10.0%
!!! ATTTTATATATTGTACTTTA+TGG - chr5_2:40951299-40951318 Msa0770360:CDS 10.0%
!!! ATTTTTAGATGAATTATGAA+GGG + chr5_2:40948422-40948441 None:intergenic 15.0%
!!! AATTTTTAGATGAATTATGA+AGG + chr5_2:40948423-40948442 None:intergenic 15.0%
!!! CTTTTTTATGATATCAAAAA+AGG - chr5_2:40948512-40948531 Msa0770360:three_prime_UTR 15.0%
!! GATTCAAAATTCAAATTTAT+GGG + chr5_2:40948561-40948580 None:intergenic 15.0%
!! ATCAAGATTTAATCAAAAAA+GGG + chr5_2:40948587-40948606 None:intergenic 15.0%
!! AATCAAGATTTAATCAAAAA+AGG + chr5_2:40948588-40948607 None:intergenic 15.0%
!!! TTTTTATCAAAACACAAAAT+GGG + chr5_2:40948613-40948632 None:intergenic 15.0%
!!! ATTTTTATCAAAACACAAAA+TGG + chr5_2:40948614-40948633 None:intergenic 15.0%
!!! TGTTTAAAAATTTTCAAGTT+AGG - chr5_2:40950368-40950387 Msa0770360:intron 15.0%
!!! AACAATTGAAAATTTTCTTA+CGG + chr5_2:40951239-40951258 None:intergenic 15.0%
!! AAATTAAAGACAAAATCAAA+GGG + chr5_2:40951492-40951511 None:intergenic 15.0%
!! AAAATTAAAGACAAAATCAA+AGG + chr5_2:40951493-40951512 None:intergenic 15.0%
!!! TTTTTTTTTTTTGTTTCTCT+TGG - chr5_2:40951512-40951531 Msa0770360:five_prime_UTR 15.0%
!!! TTTTTTTTTTTGTTTCTCTT+GGG - chr5_2:40951513-40951532 Msa0770360:five_prime_UTR 15.0%
!!! TTATCATTAATTTTTATCAC+AGG - chr5_2:40951783-40951802 Msa0770360:five_prime_UTR 15.0%
!!! TATCATTAATTTTTATCACA+GGG - chr5_2:40951784-40951803 Msa0770360:five_prime_UTR 15.0%
!! TGTAATATAGAGATAGAAAA+AGG + chr5_2:40948344-40948363 None:intergenic 20.0%
!! GGATTCAAAATTCAAATTTA+TGG + chr5_2:40948562-40948581 None:intergenic 20.0%
!! TAAGGTAAACAAAAAATGTA+TGG - chr5_2:40948774-40948793 Msa0770360:CDS 20.0%
!! AAATCATCATAATAACTATC+AGG + chr5_2:40949200-40949219 None:intergenic 20.0%
!! ACTTTAATATCTTGATTGTT+TGG - chr5_2:40949747-40949766 Msa0770360:intron 20.0%
!! CTTTAATATCTTGATTGTTT+GGG - chr5_2:40949748-40949767 Msa0770360:intron 20.0%
!!! AATTCCATTAGTTTTGAAAA+GGG - chr5_2:40949806-40949825 Msa0770360:intron 20.0%
!! GTATCATCAATTAAAAAAAG+AGG + chr5_2:40950245-40950264 None:intergenic 20.0%
!! ACTTAAGAAAATACATTCTT+CGG + chr5_2:40950477-40950496 None:intergenic 20.0%
! GGTAAAATTGAAGAAAAAAG+GGG + chr5_2:40948388-40948407 None:intergenic 25.0%
! GGGTAAAATTGAAGAAAAAA+GGG + chr5_2:40948389-40948408 None:intergenic 25.0%
! ATTATGAAGGGAAATCAAAA+GGG + chr5_2:40948410-40948429 None:intergenic 25.0%
! AATTATGAAGGGAAATCAAA+AGG + chr5_2:40948411-40948430 None:intergenic 25.0%
! AGATTTAATCAAAAAAGGGT+TGG + chr5_2:40948583-40948602 None:intergenic 25.0%
!! GTGACAAATATTGTCTTTTT+AGG + chr5_2:40948718-40948737 None:intergenic 25.0%
!!! TGTGTTTTTTGTGTTGTTTA+AGG - chr5_2:40948756-40948775 Msa0770360:CDS 25.0%
!! TCAATACTGATATTTGAGAT+TGG + chr5_2:40948833-40948852 None:intergenic 25.0%
! AAACTTCAATGAAGATGTAA+GGG + chr5_2:40949060-40949079 None:intergenic 25.0%
! AAAACTTCAATGAAGATGTA+AGG + chr5_2:40949061-40949080 None:intergenic 25.0%
!! TACATCTTCATTGAAGTTTT+CGG - chr5_2:40949061-40949080 Msa0770360:intron 25.0%
!! TTACTTTGAAGAAGTTGATT+AGG - chr5_2:40949099-40949118 Msa0770360:intron 25.0%
! GTGATGATCATAAACAAATA+AGG + chr5_2:40949287-40949306 None:intergenic 25.0%
! TTTATGATCATCACGAAATT+GGG - chr5_2:40949293-40949312 Msa0770360:CDS 25.0%
! AAACATATGATCAACACAAA+AGG + chr5_2:40949378-40949397 None:intergenic 25.0%
! AATCACATTGTCTAGATTAA+TGG - chr5_2:40949401-40949420 Msa0770360:intron 25.0%
! TACAACCATTAGTATTATTG+TGG - chr5_2:40949570-40949589 Msa0770360:CDS 25.0%
! ACAACCATTAGTATTATTGT+GGG - chr5_2:40949571-40949590 Msa0770360:CDS 25.0%
!!! GAATTCCATTAGTTTTGAAA+AGG - chr5_2:40949805-40949824 Msa0770360:intron 25.0%
!! TTTTTCATAACCATTTCTAC+AGG - chr5_2:40949954-40949973 Msa0770360:intron 25.0%
! ATAGTAAAACTCAATTCCTT+TGG - chr5_2:40950397-40950416 Msa0770360:intron 25.0%
! TTATTGTCAACTTTAACCAA+AGG + chr5_2:40950416-40950435 None:intergenic 25.0%
! TCATCACATTAAAATACCTT+GGG + chr5_2:40950700-40950719 None:intergenic 25.0%
! TTCATCACATTAAAATACCT+TGG + chr5_2:40950701-40950720 None:intergenic 25.0%
!!! AAGGAAAAAGTATTACTAAG+GGG + chr5_2:40950936-40950955 None:intergenic 25.0%
!!! CAAGGAAAAAGTATTACTAA+GGG + chr5_2:40950937-40950956 None:intergenic 25.0%
!!! TCAAGGAAAAAGTATTACTA+AGG + chr5_2:40950938-40950957 None:intergenic 25.0%
! CAAATACAATATCGAAAGAA+AGG - chr5_2:40951385-40951404 Msa0770360:five_prime_UTR 25.0%
AGAAAGAATGAAGAAAGAAG+AGG + chr5_2:40948306-40948325 None:intergenic 30.0%
GGGGTAAAATTGAAGAAAAA+AGG + chr5_2:40948390-40948409 None:intergenic 30.0%
TTATGAAGGGAAATCAAAAG+GGG + chr5_2:40948409-40948428 None:intergenic 30.0%
! TTTGAAACACAACCATGAAT+TGG + chr5_2:40948684-40948703 None:intergenic 30.0%
GTTGTGTTTCAAATTTGACA+AGG - chr5_2:40948691-40948710 Msa0770360:CDS 30.0%
ACAACACAAAAAACACAACA+GGG + chr5_2:40948753-40948772 None:intergenic 30.0%
AACAACACAAAAAACACAAC+AGG + chr5_2:40948754-40948773 None:intergenic 30.0%
GTGAAATTTCAAGACCTTTA+CGG - chr5_2:40948888-40948907 Msa0770360:intron 30.0%
TGGTATCTTCATACAACTAT+AGG - chr5_2:40949023-40949042 Msa0770360:intron 30.0%
TTCATACAACTATAGGACAA+GGG - chr5_2:40949030-40949049 Msa0770360:intron 30.0%
! TTGAAGAAGTTGATTAGGAA+AGG - chr5_2:40949104-40949123 Msa0770360:intron 30.0%
! TGAAGAAGTTGATTAGGAAA+GGG - chr5_2:40949105-40949124 Msa0770360:intron 30.0%
GTTTATGATCATCACGAAAT+TGG - chr5_2:40949292-40949311 Msa0770360:CDS 30.0%
! CAATAAGTTTTGCTCATTAG+AGG + chr5_2:40949485-40949504 None:intergenic 30.0%
CTCTAATGAGCAAAACTTAT+TGG - chr5_2:40949483-40949502 Msa0770360:CDS 30.0%
ATGAATGTCAATGAGAGTTA+AGG - chr5_2:40949508-40949527 Msa0770360:CDS 30.0%
AGTTAAGGAAGATTCATAAG+AGG - chr5_2:40949523-40949542 Msa0770360:CDS 30.0%
AGATCCCACAATAATACTAA+TGG + chr5_2:40949578-40949597 None:intergenic 30.0%
ACTAATGGAATTCACATTGT+TGG + chr5_2:40949798-40949817 None:intergenic 30.0%
TGACACTACTTAATATCTCA+TGG - chr5_2:40950183-40950202 Msa0770360:intron 30.0%
! TACATCTATTCCTTTTCTTC+TGG - chr5_2:40950270-40950289 Msa0770360:intron 30.0%
! ACATCTATTCCTTTTCTTCT+GGG - chr5_2:40950271-40950290 Msa0770360:intron 30.0%
AGCAAATGTATGAGCATAAT+AGG + chr5_2:40950327-40950346 None:intergenic 30.0%
TATTATGCTCATACATTTGC+TGG - chr5_2:40950326-40950345 Msa0770360:intron 30.0%
!!! GTACTGACTCTACAATATTT+TGG - chr5_2:40950495-40950514 Msa0770360:intron 30.0%
TGTTACACAAACAACTTATC+AGG - chr5_2:40950626-40950645 Msa0770360:intron 30.0%
! AATTCTGAAAATTGCCGAAA+TGG - chr5_2:40950752-40950771 Msa0770360:intron 30.0%
GTAAATCATCTGGATCAAAT+AGG + chr5_2:40951213-40951232 None:intergenic 30.0%
AAAGCTAAATTCCCTTAAAG+TGG - chr5_2:40951455-40951474 Msa0770360:five_prime_UTR 30.0%
CTATTTGTCATCCACTTTAA+GGG + chr5_2:40951469-40951488 None:intergenic 30.0%
AAACATCCTAAAATACACCA+GGG + chr5_2:40951693-40951712 None:intergenic 30.0%
!!! GTGTATTTTAGGATGTTTGT+AGG - chr5_2:40951695-40951714 Msa0770360:five_prime_UTR 30.0%
ACTTTCTTAAGTATTCTCCA+TGG - chr5_2:40951810-40951829 Msa0770360:five_prime_UTR 30.0%
AGAATGAAGAAAGAAGAGGA+GGG + chr5_2:40948302-40948321 None:intergenic 35.0%
AAGAATGAAGAAAGAAGAGG+AGG + chr5_2:40948303-40948322 None:intergenic 35.0%
TTGGTCTATTTAGAGGAACT+GGG + chr5_2:40948665-40948684 None:intergenic 35.0%
! ATTGGTCTATTTAGAGGAAC+TGG + chr5_2:40948666-40948685 None:intergenic 35.0%
! CCATGAATTGGTCTATTTAG+AGG + chr5_2:40948672-40948691 None:intergenic 35.0%
CCTCTAAATAGACCAATTCA+TGG - chr5_2:40948669-40948688 Msa0770360:CDS 35.0%
CAAAAAACACAACAGGGTTA+AGG + chr5_2:40948747-40948766 None:intergenic 35.0%
GAGATTGGTATTCAAATGCA+AGG + chr5_2:40948818-40948837 None:intergenic 35.0%
GCTCTTCTTGAATGAATACT+TGG + chr5_2:40948858-40948877 None:intergenic 35.0%
TCAAGACCTTTACGGATTTA+CGG - chr5_2:40948896-40948915 Msa0770360:intron 35.0%
TGATGTGAATGTGTTGAATG+AGG - chr5_2:40948935-40948954 Msa0770360:CDS 35.0%
TGAATGTGTTGAATGAGGTA+AGG - chr5_2:40948940-40948959 Msa0770360:CDS 35.0%
GAATGTGTTGAATGAGGTAA+GGG - chr5_2:40948941-40948960 Msa0770360:CDS 35.0%
CTTCATACAACTATAGGACA+AGG - chr5_2:40949029-40949048 Msa0770360:intron 35.0%
! TTCATTGAAGTTTTCGGCAT+TGG - chr5_2:40949067-40949086 Msa0770360:intron 35.0%
ATAATAACTATCAGGAACCG+TGG + chr5_2:40949192-40949211 None:intergenic 35.0%
TGATGATTTGACAAAAGCTG+TGG - chr5_2:40949211-40949230 Msa0770360:intron 35.0%
! CAGTCCCTTTTCAAAACTAA+TGG + chr5_2:40949813-40949832 None:intergenic 35.0%
GAACTTGTCTAGATGTCAAA+AGG - chr5_2:40949903-40949922 Msa0770360:intron 35.0%
AATACCCAACATCAGAATCA+CGG + chr5_2:40950068-40950087 None:intergenic 35.0%
!!! TCTACAATATTTTGGCTCCA+GGG - chr5_2:40950503-40950522 Msa0770360:intron 35.0%
! AAACCGAAGAAGATGCATTT+TGG - chr5_2:40950564-40950583 Msa0770360:intron 35.0%
CATCCAAAATGCATCTTCTT+CGG + chr5_2:40950570-40950589 None:intergenic 35.0%
TAAACACTCTTTGCTCAACA+TGG + chr5_2:40950655-40950674 None:intergenic 35.0%
!!! ATGGGATGTTATTTTCTACG+AGG - chr5_2:40950977-40950996 Msa0770360:CDS 35.0%
!!! TGGGATGTTATTTTCTACGA+GGG - chr5_2:40950978-40950997 Msa0770360:CDS 35.0%
GGCTAAGGTTATATTCAATG+TGG - chr5_2:40951001-40951020 Msa0770360:CDS 35.0%
TGGTACCTTAAAAATTGCCA+AGG + chr5_2:40951027-40951046 None:intergenic 35.0%
TTAGACTTTCCGTTCTTTCT+TGG - chr5_2:40951052-40951071 Msa0770360:CDS 35.0%
GATCAGAAACCAAGAAAGAA+CGG + chr5_2:40951064-40951083 None:intergenic 35.0%
TTACTTCTAACCCATCATGT+TGG - chr5_2:40951151-40951170 Msa0770360:CDS 35.0%
TACTTCTAACCCATCATGTT+GGG - chr5_2:40951152-40951171 Msa0770360:CDS 35.0%
CTTACGGTTAGTAAATCATC+TGG + chr5_2:40951223-40951242 None:intergenic 35.0%
ATCGAAAGAAAGGAAGAAAC+AGG - chr5_2:40951395-40951414 Msa0770360:five_prime_UTR 35.0%
GCTATTTGTCATCCACTTTA+AGG + chr5_2:40951470-40951489 None:intergenic 35.0%
TAAAGGATTCCACAGTTTCA+AGG + chr5_2:40951631-40951650 None:intergenic 35.0%
AATCCTTTATATCCTCCTCA+GGG - chr5_2:40951642-40951661 Msa0770360:five_prime_UTR 35.0%
CAAACATCCTAAAATACACC+AGG + chr5_2:40951694-40951713 None:intergenic 35.0%
GGAACTGGGTCATTAAGATT+AGG + chr5_2:40948651-40948670 None:intergenic 40.0%
TTTACGGATTTACGGTGGAA+GGG - chr5_2:40948904-40948923 Msa0770360:intron 40.0%
GTTGAATGAGGTAAGGGAAA+AGG - chr5_2:40948947-40948966 Msa0770360:CDS 40.0%
TGAGACAACAAGGTAGAGTT+TGG - chr5_2:40948970-40948989 Msa0770360:CDS 40.0%
ACAACAAGGTAGAGTTTGGT+GGG - chr5_2:40948974-40948993 Msa0770360:CDS 40.0%
!! AGGCTAGTAAAGGTGCTAAT+TGG - chr5_2:40949003-40949022 Msa0770360:intron 40.0%
GACAACGAAAACCAAACCTT+AGG + chr5_2:40949149-40949168 None:intergenic 40.0%
!!! AAGGTTTGGTTTTCGTTGTC+CGG - chr5_2:40949149-40949168 Msa0770360:CDS 40.0%
TGATTTGACAAAAGCTGTGG+AGG - chr5_2:40949214-40949233 Msa0770360:intron 40.0%
GATTTGACAAAAGCTGTGGA+GGG - chr5_2:40949215-40949234 Msa0770360:intron 40.0%
ATTTGACAAAAGCTGTGGAG+GGG - chr5_2:40949216-40949235 Msa0770360:intron 40.0%
GAAAAACATACAAACCTGCG+TGG - chr5_2:40949688-40949707 Msa0770360:intron 40.0%
TCGATCTTTAAACTGCATCG+AGG + chr5_2:40949720-40949739 None:intergenic 40.0%
TCGATGCAGTTTAAAGATCG+AGG - chr5_2:40949719-40949738 Msa0770360:intron 40.0%
CGATGCAGTTTAAAGATCGA+GGG - chr5_2:40949720-40949739 Msa0770360:intron 40.0%
AAAAGGGACTGTTGTCATCA+GGG - chr5_2:40949822-40949841 Msa0770360:intron 40.0%
TCTTTCCGTGATTCTGATGT+TGG - chr5_2:40950060-40950079 Msa0770360:CDS 40.0%
CTTTCCGTGATTCTGATGTT+GGG - chr5_2:40950061-40950080 Msa0770360:CDS 40.0%
! TTCTGATGTTGGGTATTGTC+AGG - chr5_2:40950071-40950090 Msa0770360:CDS 40.0%
GGGAAAACTTCACAAAAGGA+AGG + chr5_2:40950115-40950134 None:intergenic 40.0%
TTCATCTGCTTGCTTAGCAA+GGG + chr5_2:40950138-40950157 None:intergenic 40.0%
ATTCATCTGCTTGCTTAGCA+AGG + chr5_2:40950139-40950158 None:intergenic 40.0%
TTGCTAAGCAAGCAGATGAA+TGG - chr5_2:40950138-40950157 Msa0770360:CDS 40.0%
CCATCTAATCCCAGAAGAAA+AGG + chr5_2:40950283-40950302 None:intergenic 40.0%
!!! CCTTTTCTTCTGGGATTAGA+TGG - chr5_2:40950280-40950299 Msa0770360:intron 40.0%
!!! CTCTACAATATTTTGGCTCC+AGG - chr5_2:40950502-40950521 Msa0770360:intron 40.0%
CTGCAACATAATTCAAACCC+TGG + chr5_2:40950523-40950542 None:intergenic 40.0%
! TGTCTTGTTGGAAAATGTCC+TGG - chr5_2:40950595-40950614 Msa0770360:intron 40.0%
AATTGCCGAAATGGAAATGC+AGG - chr5_2:40950761-40950780 Msa0770360:intron 40.0%
GCAATCCTGCATTTCCATTT+CGG + chr5_2:40950769-40950788 None:intergenic 40.0%
ATGCAGGATTGCAACTCATT+TGG - chr5_2:40950777-40950796 Msa0770360:intron 40.0%
TTACTCTAACCAACCTCTGA+CGG + chr5_2:40950871-40950890 None:intergenic 40.0%
!!! GGGATGTTATTTTCTACGAG+GGG - chr5_2:40950979-40950998 Msa0770360:CDS 40.0%
!!! GGATGTTATTTTCTACGAGG+GGG - chr5_2:40950980-40950999 Msa0770360:CDS 40.0%
GGTTATATTCAATGTGGCCT+TGG - chr5_2:40951007-40951026 Msa0770360:CDS 40.0%
!! TGTGGCCTTGGCAATTTTTA+AGG - chr5_2:40951019-40951038 Msa0770360:CDS 40.0%
TCACCTCTTATTGCAGATGA+AGG - chr5_2:40951120-40951139 Msa0770360:CDS 40.0%
CTTCCTTCATCTGCAATAAG+AGG + chr5_2:40951126-40951145 None:intergenic 40.0%
ACTTCTAACCCATCATGTTG+GGG - chr5_2:40951153-40951172 Msa0770360:CDS 40.0%
TGGATCAAATAGGTGATGAG+TGG + chr5_2:40951203-40951222 None:intergenic 40.0%
ATCATCCGTTTGATGTTTGC+AGG - chr5_2:40951332-40951351 Msa0770360:CDS 40.0%
CAGGTGGCATTTGATAAGAT+AGG - chr5_2:40951351-40951370 Msa0770360:exon 40.0%
TCATGAAGGAGCTTGATCAA+AGG - chr5_2:40951427-40951446 Msa0770360:five_prime_UTR 40.0%
ACGATCACTTAGATGATCGA+TGG + chr5_2:40951578-40951597 None:intergenic 40.0%
CTAAGTGATCGTCCTAAGTA+CGG - chr5_2:40951586-40951605 Msa0770360:five_prime_UTR 40.0%
GAATCCTTTATATCCTCCTC+AGG - chr5_2:40951641-40951660 Msa0770360:five_prime_UTR 40.0%
AGACCTTTACGGATTTACGG+TGG - chr5_2:40948899-40948918 Msa0770360:intron 45.0%
CTTCCACCGTAAATCCGTAA+AGG + chr5_2:40948905-40948924 None:intergenic 45.0%
CTTTACGGATTTACGGTGGA+AGG - chr5_2:40948903-40948922 Msa0770360:intron 45.0%
ATTTACGGTGGAAGGGAATG+TGG - chr5_2:40948911-40948930 Msa0770360:intron 45.0%
AGGGAAAAGGTGAGACAACA+AGG - chr5_2:40948960-40948979 Msa0770360:CDS 45.0%
GACAACAAGGTAGAGTTTGG+TGG - chr5_2:40948973-40948992 Msa0770360:CDS 45.0%
CAAACCTTAGGCCTAAGAAC+CGG + chr5_2:40949137-40949156 None:intergenic 45.0%
TGCTGCGAAGAAAAAGTCCA+CGG - chr5_2:40949172-40949191 Msa0770360:intron 45.0%
ATCGATCTGTCTAGTAGCAG+GGG + chr5_2:40949249-40949268 None:intergenic 45.0%
GATCGATCTGTCTAGTAGCA+GGG + chr5_2:40949250-40949269 None:intergenic 45.0%
TGATCGATCTGTCTAGTAGC+AGG + chr5_2:40949251-40949270 None:intergenic 45.0%
GAAAAGGGACTGTTGTCATC+AGG - chr5_2:40949821-40949840 Msa0770360:intron 45.0%
AGGGGGGAAAACTTCACAAA+AGG + chr5_2:40950119-40950138 None:intergenic 45.0%
TCATCTGCTTGCTTAGCAAG+GGG + chr5_2:40950137-40950156 None:intergenic 45.0%
! TGTTGCAGCATTGTTGTTGC+TGG - chr5_2:40950535-40950554 Msa0770360:intron 45.0%
!! TTGGATGCTTGCTGTCTTGT+TGG - chr5_2:40950583-40950602 Msa0770360:intron 45.0%
TTGTGTAACAGTCGCTAACC+AGG + chr5_2:40950616-40950635 None:intergenic 45.0%
!! TGCTCACTAAAAAGTGCCCA+AGG - chr5_2:40950681-40950700 Msa0770360:intron 45.0%
TTTCCCTTGTTACCACTGAG+TGG - chr5_2:40950818-40950837 Msa0770360:intron 45.0%
GAACCACTCAGTGGTAACAA+GGG + chr5_2:40950824-40950843 None:intergenic 45.0%
! GACTCTTTGAAAACAGGCAC+AGG + chr5_2:40950846-40950865 None:intergenic 45.0%
! ACGGGAGACTCTTTGAAAAC+AGG + chr5_2:40950852-40950871 None:intergenic 45.0%
TACTCTAACCAACCTCTGAC+GGG + chr5_2:40950870-40950889 None:intergenic 45.0%
TCGCAGAGTTGTCTGAATCA+AGG + chr5_2:40950955-40950974 None:intergenic 45.0%
TTCAGACAACTCTGCGAGTA+TGG - chr5_2:40950958-40950977 Msa0770360:CDS 45.0%
TCAGACAACTCTGCGAGTAT+GGG - chr5_2:40950959-40950978 Msa0770360:CDS 45.0%
! TATTTTCTACGAGGGGGCTA+AGG - chr5_2:40950986-40951005 Msa0770360:CDS 45.0%
GAACGGAAAGTCTAAGCTAG+TGG + chr5_2:40951047-40951066 None:intergenic 45.0%
GATTGCTTCCCCAACATGAT+GGG + chr5_2:40951164-40951183 None:intergenic 45.0%
TGATTGCTTCCCCAACATGA+TGG + chr5_2:40951165-40951184 None:intergenic 45.0%
ATCCGTTTGATGTTTGCAGG+TGG - chr5_2:40951335-40951354 Msa0770360:CDS 45.0%
TGCCACCTGCAAACATCAAA+CGG + chr5_2:40951340-40951359 None:intergenic 45.0%
ACAGGAACCTGAAGTCATGA+AGG - chr5_2:40951413-40951432 Msa0770360:five_prime_UTR 45.0%
TCAAGCTCCTTCATGACTTC+AGG + chr5_2:40951423-40951442 None:intergenic 45.0%
CGAGCAAAACCTTGAAACTG+TGG - chr5_2:40951619-40951638 Msa0770360:five_prime_UTR 45.0%
ATGCCCTGAGGAGGATATAA+AGG + chr5_2:40951648-40951667 None:intergenic 45.0%
! TGAGAGCCCTGGTGTATTTT+AGG - chr5_2:40951684-40951703 Msa0770360:five_prime_UTR 45.0%
TTGGGAAATCAAGGAAGCCA+TGG + chr5_2:40951830-40951849 None:intergenic 45.0%
ATGGCTTCCTTGATTTCCCA+AGG - chr5_2:40951829-40951848 Msa0770360:five_prime_UTR 45.0%
! AGGTAGAGTTTGGTGGGCAT+TGG - chr5_2:40948980-40948999 Msa0770360:CDS 50.0%
!! TAGAGTTTGGTGGGCATTGG+AGG - chr5_2:40948983-40949002 Msa0770360:CDS 50.0%
!! TGGGCATTGGAGGCTAGTAA+AGG - chr5_2:40948993-40949012 Msa0770360:CDS 50.0%
GATTAGGAAAGGGATACCGC+CGG - chr5_2:40949115-40949134 Msa0770360:CDS 50.0%
CGGTTCTTAGGCCTAAGGTT+TGG - chr5_2:40949135-40949154 Msa0770360:CDS 50.0%
!! GGACTTTTTCTTCGCAGCAC+CGG + chr5_2:40949171-40949190 None:intergenic 50.0%
! TGGGTATTGTCAGGTACGTG+TGG - chr5_2:40950080-40950099 Msa0770360:CDS 50.0%
ATCTGCTTGCTTAGCAAGGG+GGG + chr5_2:40950135-40950154 None:intergenic 50.0%
CATCTGCTTGCTTAGCAAGG+GGG + chr5_2:40950136-40950155 None:intergenic 50.0%
GGAACCACTCAGTGGTAACA+AGG + chr5_2:40950825-40950844 None:intergenic 50.0%
TTCAAAGAGTCTCCCGTCAG+AGG - chr5_2:40950855-40950874 Msa0770360:intron 50.0%
CGTTGAAGCAGACCGTACTT+AGG + chr5_2:40951601-40951620 None:intergenic 50.0%
! ATATCCTCCTCAGGGCATCA+TGG - chr5_2:40951650-40951669 Msa0770360:five_prime_UTR 50.0%
TATGCCTGATATGAGAGCCC+TGG - chr5_2:40951673-40951692 Msa0770360:five_prime_UTR 50.0%
TACACCAGGGCTCTCATATC+AGG + chr5_2:40951680-40951699 None:intergenic 50.0%
!! AAGGGATACCGCCGGTTCTT+AGG - chr5_2:40949123-40949142 Msa0770360:CDS 55.0%
ACCTTAGGCCTAAGAACCGG+CGG + chr5_2:40949134-40949153 None:intergenic 55.0%
GACAAAAGCTGTGGAGGGGA+AGG - chr5_2:40949220-40949239 Msa0770360:intron 55.0%
CGCGGTAGGTCCTGTAGAAA+TGG + chr5_2:40949967-40949986 None:intergenic 55.0%
GAACCTTCCCTGGTCATGCA+TGG - chr5_2:40949986-40950005 Msa0770360:intron 55.0%
TGTCCAGCCATGCATGACCA+GGG + chr5_2:40949996-40950015 None:intergenic 55.0%
AAGAGTCTCCCGTCAGAGGT+TGG - chr5_2:40950859-40950878 Msa0770360:intron 55.0%
CATACCATGATGCCCTGAGG+AGG + chr5_2:40951657-40951676 None:intergenic 55.0%
AGGCATACCATGATGCCCTG+AGG + chr5_2:40951660-40951679 None:intergenic 55.0%
!! ACCGCCGGTTCTTAGGCCTA+AGG - chr5_2:40949130-40949149 Msa0770360:CDS 60.0%
CATCGAGGACATGTCCACGC+AGG + chr5_2:40949705-40949724 None:intergenic 60.0%
GCATGACCAGGGAAGGTTCG+CGG + chr5_2:40949985-40950004 None:intergenic 60.0%
CAGCCATGCATGACCAGGGA+AGG + chr5_2:40949992-40950011 None:intergenic 60.0%
CTTCCCTGGTCATGCATGGC+TGG - chr5_2:40949990-40950009 Msa0770360:intron 60.0%
GTGTCCAGCCATGCATGACC+AGG + chr5_2:40949997-40950016 None:intergenic 60.0%
TGCATGGCTGGACACACCTG+AGG - chr5_2:40950002-40950021 Msa0770360:intron 60.0%
GCATGGCTGGACACACCTGA+GGG - chr5_2:40950003-40950022 Msa0770360:intron 60.0%
CATGGCTGGACACACCTGAG+GGG - chr5_2:40950004-40950023 Msa0770360:intron 60.0%
CTAAGAGCAGCATGCCCCTC+AGG + chr5_2:40950021-40950040 None:intergenic 60.0%
! CTGAGGGGCATGCTGCTCTT+AGG - chr5_2:40950019-40950038 Msa0770360:intron 60.0%
CAGGCACAGGAACCACTCAG+TGG + chr5_2:40950833-40950852 None:intergenic 60.0%
GACCTACCGCGAACCTTCCC+TGG - chr5_2:40949976-40949995 Msa0770360:intron 65.0%
GACCAGGGAAGGTTCGCGGT+AGG + chr5_2:40949981-40950000 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 40948296 40951854 40948296 ID=Msa0770360;Name=Msa0770360
chr5_2 mRNA 40948296 40951854 40948296 ID=Msa0770360-mRNA-1;Parent=Msa0770360;Name=Msa0770360-mRNA-1;_AED=0.02;_eAED=0.02;_QI=493|1|1|1|1|1|7|366|395
chr5_2 exon 40948296 40948796 40948296 ID=Msa0770360-mRNA-1:exon:12988;Parent=Msa0770360-mRNA-1
chr5_2 exon 40948913 40949014 40948913 ID=Msa0770360-mRNA-1:exon:12987;Parent=Msa0770360-mRNA-1
chr5_2 exon 40949110 40949187 40949110 ID=Msa0770360-mRNA-1:exon:12986;Parent=Msa0770360-mRNA-1
chr5_2 exon 40949274 40949367 40949274 ID=Msa0770360-mRNA-1:exon:12985;Parent=Msa0770360-mRNA-1
chr5_2 exon 40949448 40949626 40949448 ID=Msa0770360-mRNA-1:exon:12984;Parent=Msa0770360-mRNA-1
chr5_2 exon 40950058 40950174 40950058 ID=Msa0770360-mRNA-1:exon:12983;Parent=Msa0770360-mRNA-1
chr5_2 exon 40950879 40951854 40950879 ID=Msa0770360-mRNA-1:exon:12982;Parent=Msa0770360-mRNA-1
chr5_2 five_prime_UTR 40951362 40951854 40951362 ID=Msa0770360-mRNA-1:five_prime_utr;Parent=Msa0770360-mRNA-1
chr5_2 CDS 40950879 40951361 40950879 ID=Msa0770360-mRNA-1:cds;Parent=Msa0770360-mRNA-1
chr5_2 CDS 40950058 40950174 40950058 ID=Msa0770360-mRNA-1:cds;Parent=Msa0770360-mRNA-1
chr5_2 CDS 40949448 40949626 40949448 ID=Msa0770360-mRNA-1:cds;Parent=Msa0770360-mRNA-1
chr5_2 CDS 40949274 40949367 40949274 ID=Msa0770360-mRNA-1:cds;Parent=Msa0770360-mRNA-1
chr5_2 CDS 40949110 40949187 40949110 ID=Msa0770360-mRNA-1:cds;Parent=Msa0770360-mRNA-1
chr5_2 CDS 40948913 40949014 40948913 ID=Msa0770360-mRNA-1:cds;Parent=Msa0770360-mRNA-1
chr5_2 CDS 40948662 40948796 40948662 ID=Msa0770360-mRNA-1:cds;Parent=Msa0770360-mRNA-1
chr5_2 three_prime_UTR 40948296 40948661 40948296 ID=Msa0770360-mRNA-1:three_prime_utr;Parent=Msa0770360-mRNA-1
Gene Sequence

>Msa0770360

ATGTATGGAACAAAAAGCAAAATAGACCTTGCATTTGAATACCAATCTCAAATATCAGTATTGAGACCAAGTATTCATTCAAGAAGAGCAAATCTAACTGTGAAATTTCAAGACCTTTACGGATTTACGGTGGAAGGGAATGTGGATGATGTGAATGTGTTGAATGAGGTAAGGGAAAAGGTGAGACAACAAGGTAGAGTTTGGTGGGCATTGGAGGCTAGTAAAGGTGCTAATTGGTATCTTCATACAACTATAGGACAAGGGAGTGCCCTTACATCTTCATTGAAGTTTTCGGCATTGGCTAATGCTATTACTTTGAAGAAGTTGATTAGGAAAGGGATACCGCCGGTTCTTAGGCCTAAGGTTTGGTTTTCGTTGTCCGGTGCTGCGAAGAAAAAGTCCACGGTTCCTGATAGTTATTATGATGATTTGACAAAAGCTGTGGAGGGGAAGGTTACCCCTGCTACTAGACAGATCGATCATGACCTACCGCGAACCTTCCCTGGTCATGCATGGCTGGACACACCTGAGGGGCATGCTGCTCTTAGGCGTGTTCTTGTTGCATATTCTTTCCGTGATTCTGATGTTGGGTATTGTCAGGGTTTGAATTATGTTGCAGCATTGTTGTTGCTGGTCATGAAAACCGAAGAAGATGCATTTTGGATGCTTGCTGTCTTGTTGGAAAATGTCCTGGTTAGCGACTGTTACACAAACAACTTATCAGGATGCCATGTTGAGCAAAGAGTGTTTAAAGACTTGCTCACTAAAAAGTGCCCAAGGATTGCAACTCATTTGGATTCTTTAGAATTTGACGTTTCCCTTGTTACCACTGAGTGGTTCCTGTGCCTGTTTTCAAAGAGTCTCCCGTCAGAGACAACTCTGCGAGTATGGGATGTTATTTTCTACGAGGGGGCTAAGGTTATATTCAATGTGGCCTTGGCAATTTTTAAGATGAAGGAAGATCAATTACTTCTAACCCATCATGTTGGGGAAGCAATCAATATTCTGCATCAGACCACTCATCACCTATTTGATCCAGATGATTTACTAACCGTGGCATTTGATAAGATAGGTTCGATGACAACAAATACAATATCGAAAGAAAGGAAGAAACAGGAACCTGAAGTCATGAAGGAGCTTGATCAAAGGATAAGAAAGCTAAATTCCCTTAAAGTGGATGACAAATAG
Protein sequence

>Msa0770360

MYGTKSKIDLAFEYQSQISVLRPSIHSRRANLTVKFQDLYGFTVEGNVDDVNVLNEVREKVRQQGRVWWALEASKGANWYLHTTIGQGSALTSSLKFSALANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPDSYYDDLTKAVEGKVTPATRQIDHDLPRTFPGHAWLDTPEGHAALRRVLVAYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVSDCYTNNLSGCHVEQRVFKDLLTKKCPRIATHLDSLEFDVSLVTTEWFLCLFSKSLPSETTLRVWDVIFYEGAKVIFNVALAIFKMKEDQLLLTHHVGEAINILHQTTHHLFDPDDLLTVAFDKIGSMTTNTISKERKKQEPEVMKELDQRIRKLNSLKVDDK*